Citrus Sinensis ID: 001189
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1128 | 2.2.26 [Sep-21-2011] | |||||||
| Q42093 | 1623 | ABC transporter C family | yes | no | 0.969 | 0.674 | 0.814 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.968 | 0.673 | 0.786 | 0.0 | |
| Q9C8H0 | 1495 | ABC transporter C family | no | no | 0.850 | 0.641 | 0.752 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.850 | 0.641 | 0.739 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | yes | no | 0.826 | 0.595 | 0.425 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | yes | no | 0.836 | 0.612 | 0.419 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.832 | 0.607 | 0.419 | 0.0 | |
| Q8VI47 | 1543 | Canalicular multispecific | yes | no | 0.836 | 0.611 | 0.424 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.829 | 0.613 | 0.417 | 0.0 | |
| Q8ST87 | 1334 | ABC transporter C family | yes | no | 0.838 | 0.709 | 0.411 | 0.0 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1807 bits (4681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1103 (81%), Positives = 997/1103 (90%), Gaps = 9/1103 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNAN
Sbjct: 525 NMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSL
Sbjct: 585 VSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNILFGS F
Sbjct: 645 VAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 705 DREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD +K+KEG
Sbjct: 825 LSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDDKKSKEG 883
Query: 391 -----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS 445
KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+SSTWLS
Sbjct: 884 NKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLS 943
Query: 446 YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505
WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRA
Sbjct: 944 EWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRA 1003
Query: 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 565
PM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAI
Sbjct: 1004 PMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAI 1063
Query: 566 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625
MPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING
Sbjct: 1064 MPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADING 1123
Query: 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 685
+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLL
Sbjct: 1124 RSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLL 1183
Query: 686 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIK 745
SYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWPSSGSIK
Sbjct: 1184 SYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIK 1243
Query: 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
FEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID
Sbjct: 1244 FEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILID 1303
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRR
Sbjct: 1304 DCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRR 1363
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
N LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE
Sbjct: 1364 NPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1423
Query: 926 EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
EFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA
Sbjct: 1424 EFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANA 1483
Query: 986 QYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVE 1045
+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SLTSSHNDLQ LE+E
Sbjct: 1484 EYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIE 1540
Query: 1046 DQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLA 1105
D ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+VMSRLA
Sbjct: 1541 DDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLA 1600
Query: 1106 RNRLHQSDYDLEERSIDWDHVEM 1128
RNR+ Q DY+ E + DWD+VEM
Sbjct: 1601 RNRMQQPDYNFEGNTFDWDNVEM 1623
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1760 bits (4559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1103 (78%), Positives = 991/1103 (89%), Gaps = 10/1103 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFPLFMLPN+ITQ+VNAN
Sbjct: 525 NMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLDIP+GSL
Sbjct: 585 VSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNILFG+ F
Sbjct: 645 VAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV I D
Sbjct: 705 DQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L K+ +T+ +KEG
Sbjct: 825 LCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIETKNSKEG 883
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ 450
SVL+K+EERETGVVS+KVL RY++ALGG WVV++L++CY LT+ RVSSSTWLS WTD
Sbjct: 884 NSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEWTDS 943
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
+ KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILRAPMVFF
Sbjct: 944 GTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILRAPMVFF 1003
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 570
TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWAIMPLL+
Sbjct: 1004 QTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWAIMPLLV 1063
Query: 571 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
+FY AYLYYQ+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+ING+SMD
Sbjct: 1064 VFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDN 1123
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLLLSYAL+
Sbjct: 1124 NIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALS 1183
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSIKFEDVV
Sbjct: 1184 ITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVV 1243
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILID DI
Sbjct: 1244 LRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIG 1303
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
+FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IRRN LGL
Sbjct: 1304 RFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGL 1363
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+V+EAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD LIQKTIREEFKSC
Sbjct: 1364 DAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIREEFKSC 1423
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG ANA+YLRS
Sbjct: 1424 TMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTANAEYLRS 1483
Query: 991 LVLGGEAENK-LREEN----KQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVE 1045
+ L ENK RE N + ++GQR+W ASSRWAAAAQ+ALAVSLTSSHNDLQ LE+E
Sbjct: 1484 ITL----ENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDLQSLEIE 1539
Query: 1046 DQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLA 1105
D N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+VMSRLA
Sbjct: 1540 DDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLAVMSRLA 1599
Query: 1106 RNRLHQSDYDLEERSIDWDHVEM 1128
RNR+ DY+LE +S DWD+VEM
Sbjct: 1600 RNRMQHPDYNLEGKSFDWDNVEM 1622
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1442 bits (3734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/963 (75%), Positives = 828/963 (85%), Gaps = 4/963 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
NSFILNSIPV+VTVVSFG+F LLGGDLTPARAFTSLSLFAVLRFPL MLPN+++QVVNAN
Sbjct: 526 NSFILNSIPVVVTVVSFGVFVLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNAN 585
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVG+L
Sbjct: 586 VSLQRIEELLLSEERILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLEIPVGTL 645
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSLISAMLGEL S VIRG+VAYVPQVSWIFNATVR+NILFGS F
Sbjct: 646 VAIVGGTGEGKTSLISAMLGELSHAETTSVVIRGSVAYVPQVSWIFNATVRENILFGSDF 705
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E RY +AID T+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 706 ESERYWRAIDATALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 765
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +D+IILV EGM+KEEGTF +
Sbjct: 766 DPLSALDAHVAHQVFDSCMKDELRGKTRVLVTNQLHFLPLMDKIILVSEGMIKEEGTFVE 825
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS +G LF+KLMENAGKM+ E + E + + + +L T++ K
Sbjct: 826 LSKSGILFKKLMENAGKMDATQEVNTNDENILKLGPTVTVDVSERNL----GSTKQGKRR 881
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ 450
+SVLIKQEERETG++S+ VL RYK+A+GGLWVV+ILL CY TE LRVSSSTWLS WTDQ
Sbjct: 882 RSVLIKQEERETGIISWNVLMRYKEAVGGLWVVMILLACYLATEVLRVSSSTWLSIWTDQ 941
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
S+ K + P FY +Y+LL FGQV VT NS+WLI SSL+AA+RLHDAML SILRAPM+FF
Sbjct: 942 STSKNYSPGFYIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLHDAMLSSILRAPMLFF 1001
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 570
HTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWAIMPLL+
Sbjct: 1002 HTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLI 1061
Query: 571 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA INGKSMD
Sbjct: 1062 LFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIR+TL N +NRWL IRLE +GG+MIWLTATFAV+QNG+ NQ FASTMGLLLSY LN
Sbjct: 1122 NIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLLLSYTLN 1181
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
ITSLL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSIKFEDV
Sbjct: 1182 ITSLLSGVLRQASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSIKFEDVH 1241
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRP LPPVLHGL+F + PS+KVG+VGRTGAGKSSMLN LFRIVE+E+GRI+ID D+A
Sbjct: 1242 LRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRIMIDDCDVA 1301
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
KFGL D+R++L IIPQSPVLFSGTVRFN+DPFSEH+DA LWEAL RAH+KD I RN GL
Sbjct: 1302 KFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALHRAHIKDVISRNPFGL 1361
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+V E GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIREEFKSC
Sbjct: 1362 DAEVCEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV STG ANAQYL +
Sbjct: 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481
Query: 991 LVL 993
LV
Sbjct: 1482 LVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1437 bits (3719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/963 (73%), Positives = 820/963 (85%), Gaps = 4/963 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR PL LPN+I+Q VNAN
Sbjct: 526 NSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNAN 585
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVGSL
Sbjct: 586 VSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSL 645
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NILFGS F
Sbjct: 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDF 705
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNSD++IFD
Sbjct: 706 ESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD 765
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEEG F +
Sbjct: 766 DPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGNFAE 825
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS +G LF+KLMENAGKM+ ++ T D SK + + ++ K G
Sbjct: 826 LSKSGTLFKKLMENAGKMDA----TQEVNTNDENISKLGPTVTIDVSERSLGSIQQGKWG 881
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ 450
+S+L+KQEERETG++S+ V+ RY A+GGLWVV+ILL+CY TE LRV SSTWLS WTDQ
Sbjct: 882 RSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTDQ 941
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
S+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRAPM+FF
Sbjct: 942 STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFF 1001
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 570
TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWAIMPLL+
Sbjct: 1002 ETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLI 1061
Query: 571 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
LFYA Y+YYQST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA INGKSMD
Sbjct: 1062 LFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLLLSY LN
Sbjct: 1122 NIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLLLSYTLN 1181
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
IT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI+FEDV
Sbjct: 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIQFEDVH 1241
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILID +D+A
Sbjct: 1242 LRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILIDDYDVA 1301
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
KFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I RN GL
Sbjct: 1302 KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGL 1361
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+VSE GENFSVGQRQLLSL+RALLRRSKIL LDEATA+VDVRTD+LIQ+TIREEFKSC
Sbjct: 1362 DAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSC 1421
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N QYL +
Sbjct: 1422 TMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPENGQYLSN 1481
Query: 991 LVL 993
LV
Sbjct: 1482 LVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1014 (42%), Positives = 626/1014 (61%), Gaps = 82/1014 (8%)
Query: 33 FILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
F+L PVLV+V +F ++ L+ + L +AFTS++LF +LRFP+ MLPN+I+ ++ A+
Sbjct: 546 FLLYLTPVLVSVTTFSVYVLVDSNNILDAEKAFTSITLFNILRFPMSMLPNVISAMLQAS 605
Query: 91 VSLKRMEEFLLAEE---KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPV 147
VS+ R+E++L ++ + +P A+ F+WD E PT+ N+NLDI
Sbjct: 606 VSVDRLEKYLSGDDLDTSAIQRDPNFDK---AVQFSEASFTWDRNLE-PTIRNVNLDIMP 661
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 207
G LVA+VG G GK+SL+SAMLGE+ V I+GT AYVPQ SWI N T++DNILFG
Sbjct: 662 GQLVAVVGTVGSGKSSLMSAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIKDNILFG 720
Query: 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
+ F+ RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y NSD++
Sbjct: 721 AEFDERRYQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQNSDIY 780
Query: 268 IFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325
I DDPLSA+DAHVG+ +F++ + G L+GKTR+LVT+ LHFL QVD I++V G + E+
Sbjct: 781 ILDDPLSAVDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENGTILEK 840
Query: 326 GTFEDL-------SNNGELFQKLMENAGK--------------------MEEYVEE---- 354
G++ L + N ++F K ++ G+ +EE+ E+
Sbjct: 841 GSYSSLLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISL 900
Query: 355 ---KEDG-----------ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 400
+E+ K+ K + + PKE + K LIK+E
Sbjct: 901 TLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-----LIKKEFM 955
Query: 401 ETGVVSFKVLSRYKDALGGLWVVLI-LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL 459
ETG V F + +Y A+G W ++ ++ Y L + S+ WLS WT S+ T+
Sbjct: 956 ETGKVKFSIYLKYLQAIG--WCSIVGIIFAYVLNSVAFIGSNLWLSAWTSDSN--TYNGT 1011
Query: 460 FYNT--------IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH 511
Y I+ +L Q L L S+W +A+ LH +L++ILRAPM FF+
Sbjct: 1012 NYPASQRDLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFN 1071
Query: 512 TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 571
T P+GRI+NRFA D+ +D + + +M ++ST ++I + + + I+PL ++
Sbjct: 1072 TTPIGRIVNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAII 1131
Query: 572 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 631
+ A ++Y +T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D N
Sbjct: 1132 YVAVQVFYVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTN 1191
Query: 632 IRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 691
+ + +NRWLA RLE+VG L+++ +A V+ + +G +LS ALNI
Sbjct: 1192 QKCVSSWITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLS-----GDVVGFVLSNALNI 1246
Query: 692 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 751
T L ++R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F + +
Sbjct: 1247 TQTLNWLVRMTSETETNIVAVERITEYIKVENEAPWVTD-KRPPAGWPHKGEIQFSNYQV 1305
Query: 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811
RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG DIA
Sbjct: 1306 RYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIAS 1365
Query: 812 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
GL DLR L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK + GL
Sbjct: 1366 IGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLS 1425
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 931
+VSEA +N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ TIR EF CT
Sbjct: 1426 REVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCT 1485
Query: 932 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
++ IAHRL+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1486 VITIAHRLHTIMDSDKIMVLDNGNIVEYGSPEELLESAG-PFSLMAKESGIENV 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1006 (41%), Positives = 627/1006 (62%), Gaps = 62/1006 (6%)
Query: 33 FILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
FIL P+LV+VV+F ++ L+ L +AFTS++LF +LRFPL MLP + + ++ A+
Sbjct: 544 FILQITPILVSVVTFSVYVLVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQAS 603
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VS+ R+E +L ++ +++ A+ F+WD E T+ ++NLDI G L
Sbjct: 604 VSVDRLERYLGGDDLDTSAIRRVSNFDKAVKFSEASFTWDPDLE-ATIQDVNLDIKPGQL 662
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG G GK+SL+SAMLGE+ V I+G+ AYVPQ SWI N T++DNILFGS +
Sbjct: 663 VAVVGTVGSGKSSLVSAMLGEMENV-HGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEY 721
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+Y++ + +L DL++LPGGD+ EIGE+G+N+SGGQKQRVS+ARA Y ++D++I D
Sbjct: 722 NEKKYQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILD 781
Query: 271 DPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 328
DPLSA+DAHVG+ +F++ + G L+GKTR+ VT+ +HFL QVD I+++ +G + E+G++
Sbjct: 782 DPLSAVDAHVGKHIFNKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSY 841
Query: 329 EDLSNNGELFQK----LMENAGKMEEYV-------EEKEDG-----ETVDNKTSKPA--- 369
DL + +F + M+++G E E+ +DG E + + A
Sbjct: 842 RDLLDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRR 901
Query: 370 ------------------ANGVDNDLPKEASDTRKTKEGK---SVLIKQEERETGVVSFK 408
+ N L + + K KE + LIK+E ETG V F
Sbjct: 902 ENSLRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEVEGQKLIKKEFVETGKVKFS 961
Query: 409 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-------SLKTHGPLFY 461
+ +Y A+ G W +L ++L Y L + S+ WLS WT S + +H +
Sbjct: 962 IYLKYLQAV-GWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMRI 1020
Query: 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 521
++ L Q + L ++ W I + A+K LH +L +ILRAPM FF T P GRI+NR
Sbjct: 1021 G-VFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 522 FAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581
F+ D+ +D + + +M + T V+I + + + I+PL +L+ + ++Y +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 641
T+R+++RLDS+T+SP+Y+ F E + GL IRA++ R N K +D N + + +
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 642 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701
NRWLAIRLE+VG L+++ +A V+ + +G +LS ALNIT L ++R+
Sbjct: 1200 NRWLAIRLELVGNLVVFCSALLLVIYRKTLT-----GDVVGFVLSNALNITQTLNWLVRM 1254
Query: 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 761
S AE ++ AVER+ YI + +EAP V + RPP WP G I+F + +RYRPEL VL
Sbjct: 1255 TSEAETNIVAVERISEYINVENEAPWVTD-KRPPADWPRHGEIQFNNYQVRYRPELDLVL 1313
Query: 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821
G++ I +KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG D+A GL DLR+ L
Sbjct: 1314 KGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERL 1373
Query: 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881
IIPQ P+LFSG++R NLDPF+++SD ++W ALE AHL+ + LGL ++V+E G+N
Sbjct: 1374 TIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNL 1433
Query: 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941
S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR+EF CT++ IAHRL+T
Sbjct: 1434 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHT 1493
Query: 942 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 987
I+D D+I++LD+G+++EY +PEELLSN G SF M + G N +
Sbjct: 1494 IMDSDKIMVLDNGKIVEYGSPEELLSNRG-SFYLMAKEAGIENVNH 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/1016 (41%), Positives = 626/1016 (61%), Gaps = 77/1016 (7%)
Query: 28 LQCNS-FILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMIT 84
LQC F+ PVLV+VV+F ++ L+ + L +AFTS++LF +LRFPL MLP MI+
Sbjct: 542 LQCVVIFVFQLTPVLVSVVTFSVYVLVDSNNILDAQKAFTSITLFNILRFPLSMLPMMIS 601
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL---PAISIRNGYFSWDSKAERPTLLNI 141
++ A+VS +R+E++L ++ L + A+ F+W+ +E T+ ++
Sbjct: 602 SMLQASVSTERLEKYLGGDD---LDTSAIRHDCNFDKAMQFSEASFTWEHDSE-ATVRDV 657
Query: 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVR 201
NLDI G LVA++G G GK+SLISAMLGE+ V I+GT AYVPQ SWI N T++
Sbjct: 658 NLDIMAGQLVAVIGPVGSGKSSLISAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIK 716
Query: 202 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261
DNILFG+ F RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y
Sbjct: 717 DNILFGTEFNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATY 776
Query: 262 SNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHE 319
N D+++ DDPLSA+DAHVG+ +F++ + G L GKTR+LVT+ +HFL QVD I+++
Sbjct: 777 QNLDIYLLDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGN 836
Query: 320 GMVKEEGTFEDL-SNNGELFQKL---MENAGKMEEYV------EEKEDGETVDNKTSKP- 368
G + E+G++ L + GE + L + + G EE EE +D + + P
Sbjct: 837 GTIVEKGSYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDDDYGLISSVEEIPE 896
Query: 369 ---------------------AANG-----VDNDLPKEASDTRKTKE----GKSVLIKQE 398
+NG + N L ++ K E G+ LIK+E
Sbjct: 897 DAASITMRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQK-LIKKE 955
Query: 399 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTH 456
ETG V F + Y A+G L+ + ++L + + + S+ WLS WT S + T
Sbjct: 956 FIETGKVKFSIYLEYLQAIG-LFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTD 1014
Query: 457 GPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 512
P +Y L Q + +W ++A+ LH +L++ILRAPM FF T
Sbjct: 1015 YPASQRDMRVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDT 1074
Query: 513 NPLGRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL 568
P GRI+NRFA D+ +D +++ ++ F+G ++ST V+I + + + ++PL
Sbjct: 1075 TPTGRIVNRFAGDISTVDDTLPQSLRSWITCFLG----IISTLVMICMATPVFTIIVIPL 1130
Query: 569 LLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSM 628
+++ + ++Y ST+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +
Sbjct: 1131 GIIYVSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRI 1190
Query: 629 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYA 688
D N + + +NRWLAIRLE+VG L ++ +A V+ + T+G +LS A
Sbjct: 1191 DTNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMVIYRDTLS-----GDTVGFVLSNA 1245
Query: 689 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 748
LNIT L ++R+ S E ++ AVER+ Y ++ +EAP V + RPPP WPS G I+F +
Sbjct: 1246 LNITQTLNWLVRMTSEIETNIVAVERITEYTKVENEAPWVTD-KRPPPDWPSKGKIQFNN 1304
Query: 749 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 808
+RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G+I+IDG D
Sbjct: 1305 YQVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVD 1364
Query: 809 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL 868
IA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE AHLK + L
Sbjct: 1365 IASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQL 1424
Query: 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 928
GL +V+EAG N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ TI+ EF
Sbjct: 1425 GLSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFA 1484
Query: 929 SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 984
CT++ IAHRL+TI+D D++++LD+G+++E +PEELL G F M + G N
Sbjct: 1485 HCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPG-PFYFMAKEAGIEN 1539
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q8VI47|MRP2_MOUSE Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1006 (42%), Positives = 635/1006 (63%), Gaps = 62/1006 (6%)
Query: 33 FILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
FIL+ P LV+V++F ++ L+ L +AFTS++LF +LRFPL MLP +I+ V+ A+
Sbjct: 546 FILHLTPTLVSVITFSVYVLVDSQNVLNAEKAFTSITLFNILRFPLAMLPMVISSVIQAS 605
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VS+ R+E++L +++ L + A+ F+WD E T+ ++NLDI G L
Sbjct: 606 VSVDRLEQYLGSDDLDLSAIRHVCHFDKAVQFSEASFTWDRDLE-ATIQDVNLDIKPGQL 664
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG G GK+SLISAMLGE+ V I+G++AYVPQ +WI N T++DNILFGS +
Sbjct: 665 VAVVGTVGSGKSSLISAMLGEMENV-HGHITIKGSIAYVPQQAWIQNGTIKDNILFGSEY 723
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +Y++ I+ +L DL++LPGGD+ EIGE+G+N+SGGQK RVS+ARA Y ++D++I D
Sbjct: 724 DEKKYQRVIEACALLPDLEMLPGGDMAEIGEKGINLSGGQKHRVSLARATYQDADIYILD 783
Query: 271 DPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 328
DPLSA+D HVG+ +F++ + G LSGKTR+LVT+ +HFL QVD I+++ +G + E+G++
Sbjct: 784 DPLSAVDTHVGKHIFNKVVGPNGLLSGKTRILVTHGIHFLPQVDEIVVLGKGTILEKGSY 843
Query: 329 EDLSNNGELFQK----LMENAGKMEEYV----EEKEDGE-----TVDNKTSKPAA----- 370
DL + +F K M+++G E E+EDG+ TV+ A+
Sbjct: 844 SDLMDKKGVFAKNWKTFMKHSGPEGEATVDNDSEEEDGDCGLIPTVEEIPDDAASLTMRR 903
Query: 371 -------------------NGVDNDLPKEASDTRKTKE----GKSVLIKQEERETGVVSF 407
+ + L ++ + KE G+ LIK+E ETG V F
Sbjct: 904 ENSLRRTLSRSSRSGSRRGKSLKSSLKIKSVNALNKKEEVVKGQK-LIKKEFVETGKVKF 962
Query: 408 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNT- 463
+ +Y A+G W +L +++ Y L + ++ WLS WT S + + P +
Sbjct: 963 SIYLKYLQAVG-WWSLLFIVIFYVLNYVAFIGTNLWLSAWTSDSEKQNGTDNSPSQRDMR 1021
Query: 464 --IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 521
++ L Q + L++S W I + A+K LH +L +ILRAPM FF T P GRI+NR
Sbjct: 1022 IGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPMSFFDTTPTGRIVNR 1081
Query: 522 FAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581
FA D+ +D + + ++ ++ST V+I + + + + I+PL +L+ + ++Y +
Sbjct: 1082 FAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIPLSILYVSVQVFYVA 1141
Query: 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 641
T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K +D N + + +
Sbjct: 1142 TSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQIDTNQKCVFSWITS 1201
Query: 642 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701
NRWLAIRLE+VG L+++ +A V+ S T+G +LS ALNIT L ++R+
Sbjct: 1202 NRWLAIRLELVGNLIVFCSALLLVIYKNSLT-----GDTVGFVLSNALNITQTLNWLVRM 1256
Query: 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 761
S E ++ AVER+ YI + +EAP V + +PP WP G I+F + +RYRPEL VL
Sbjct: 1257 TSEVETNIVAVERINEYINVDNEAPWVTD-KKPPADWPKKGEIQFNNYQVRYRPELDLVL 1315
Query: 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821
G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG DIA GL DLR L
Sbjct: 1316 KGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDIASIGLHDLRGRL 1375
Query: 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881
IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK + LGL +V+E G+N
Sbjct: 1376 TIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQLGLLHEVTEGGDNL 1435
Query: 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941
S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR EF CT++ IAHRL+T
Sbjct: 1436 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFSQCTVITIAHRLHT 1495
Query: 942 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 987
I+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1496 IMDSDKIMVLDSGKIVEYGSPEELLSNMG-PFYLMAKEAGIESVNH 1540
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Mus musculus (taxid: 10090) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/993 (41%), Positives = 611/993 (61%), Gaps = 57/993 (5%)
Query: 32 SFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNA 89
+F P LV + +F ++ + + L +AF SL+LF +LRFPL +LP +I+ +V A
Sbjct: 549 TFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNILPMVISSIVEA 608
Query: 90 NVSLKRMEEFLLAEEKILLPNP----PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDI 145
+VSLKR+ FL EE L P+ P+T+ +I ++N FSW SK + P+L +IN +
Sbjct: 609 SVSLKRLRVFLSHEE--LDPDSIIRGPITNAEGSIVVKNATFSW-SKTDPPSLNSINFTV 665
Query: 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL 205
P GSL+A+VG G GK+SL+SA+LGE+ + V++G++AYVPQ +WI NAT+ DNI+
Sbjct: 666 PEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKGSIAYVPQQAWIQNATLEDNII 724
Query: 206 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265
FG +RY++ I+ +L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAVY N+D
Sbjct: 725 FGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQKQRVSLARAVYCNAD 784
Query: 266 VFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323
++FDDPLSA+DAHVG+ +F++ I +G L KTRVLVT+ +++L Q+D I+++ +G +
Sbjct: 785 TYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVTHAVNYLPQMDTILVMTDGEIS 844
Query: 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGV---------- 373
E G++++L F + + E+ +E D + K KP NGV
Sbjct: 845 EMGSYQELLKQDGAFAEFLRTYANAEQSMES-SDASSPSGKEGKPVENGVLVNDATGKLM 903
Query: 374 DNDLPKEASDTRKTKEGKS-------------------VLIKQEERETGVVSFKVLSRYK 414
L ++ +R+T GKS L + + +TG V V Y
Sbjct: 904 HRQLSNSSTYSRET--GKSQHQSSTAELQKPLAEKNSWKLTEADTAKTGRVKATVYWEYM 961
Query: 415 DALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI----YSLLSF 470
A+G L++ + + + ++S+ WLS WTD + +G Y + Y L
Sbjct: 962 KAIG-LYISFLSVFLFMCNHIASLASNYWLSLWTDDPVV--NGTQQYTNVRLGVYGALGI 1018
Query: 471 GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDID 530
Q + S + I ++A++ LH +LH++LR+PM FF P G +++RF+K++ ID
Sbjct: 1019 SQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFERTPSGNLVSRFSKEIDTID 1078
Query: 531 RNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 590
+ + MFMG ++ ++I + + ++ I PL L++ +Y +T+R++KRL+
Sbjct: 1079 STIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLVYLLVQRFYVATSRQLKRLE 1138
Query: 591 SITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 650
S++RSPVY+ F E L G+S IRA++ R N +D+N + ++ ANRWLA+RLE
Sbjct: 1139 SVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYYPSIVANRWLAVRLE 1198
Query: 651 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLN 710
VG ++ A FAV+ A N+ + +GL +SY+L IT+ L ++R+ S E ++
Sbjct: 1199 FVGNCIVLFAALFAVI----ARNKLS-PGLIGLSVSYSLQITAYLNWLVRMTSDLETNIV 1253
Query: 711 AVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPP 770
AVERV Y E+ EA IE P WP G ++F LRYR +L VL ++ TI
Sbjct: 1254 AVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGLRYREDLDLVLKNINITING 1313
Query: 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 830
+KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR + IIPQ P+L
Sbjct: 1314 GEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAKIGLHDLRFKITIIPQDPIL 1373
Query: 831 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890
FSG++R NLDPF +HSD D+W +LE AHLK+ + L+ + SE GEN SVGQRQL+
Sbjct: 1374 FSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSEGGENLSVGQRQLVC 1433
Query: 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950
L+RALLR+SKILVLDEATAAVD+ TD LIQ TI+ +F+ CT+L IAHRLNTI+D R+L+
Sbjct: 1434 LARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECTVLTIAHRLNTIMDYTRVLV 1493
Query: 951 LDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 983
LD G V+E D+P+ LL +G +S M + +G A
Sbjct: 1494 LDRGEVVECDSPDNLLQAKGLFYS-MAKDSGLA 1525
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|Q8ST87|ABCCA_DICDI ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/976 (41%), Positives = 601/976 (61%), Gaps = 30/976 (3%)
Query: 34 ILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSL 93
I++++P ++ + L +R F++LS +LR PL LP +I + ++
Sbjct: 337 IISALPTAAAILVISSYYGHEKSLDASRIFSALSYLNLLRLPLGFLPIIIALGIQMQIAG 396
Query: 94 KRMEEFLLAEEKI---LLPNPPLTSGLPAISIRNGYFSWDS-KAERPTLLNINLDIPVGS 149
KR+ +FLL E + NP L +G + ++N +W+ K + L NIN + S
Sbjct: 397 KRVTDFLLLPEMKDIQQIDNPSLPNG---VYMKNSTTTWNKLKEDSFGLKNINFEATGTS 453
Query: 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSA 209
L +VG G GK++L+ AMLGEL + D I+G++AYVPQ +WI NAT+++NI+FG
Sbjct: 454 LTMVVGSVGSGKSTLVQAMLGELE-IIDGEIGIKGSIAYVPQQAWIINATLKENIIFGKE 512
Query: 210 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269
+ RY+K ++V +L+ D++L P GD EIGERG+N+SGGQKQRVS+ARAVYS++DV+I
Sbjct: 513 LDEERYQKVLEVCALKRDIELFPQGDSVEIGERGINLSGGQKQRVSIARAVYSDADVYIL 572
Query: 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE 329
DDPLSA+D+HVG+ +F +C +G LS KT +LV NQL++L D +++ G + E GT+
Sbjct: 573 DDPLSAVDSHVGKHLFHKCFKGILSSKTVILVANQLNYLPFADNTVVLKSGEIVERGTYY 632
Query: 330 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKE 389
+L N+ F ++E G ++E V K+D D + V+ DL K+ K+K
Sbjct: 633 ELINSKLEFSSILEKYG-VDENVISKKDDIDEDEDEDQDTIEKVEIDLNKDEKSQPKSKS 691
Query: 390 GKS--VLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET-LRVSSSTWLSY 446
+ LI +EE E G V+ KV +Y A GGL + ++ + +FL ET + S WLS+
Sbjct: 692 SNTDGTLISEEESEQGAVAGKVYWKYVTAGGGL--LFLVSMIFFLLETGSKTFSDWWLSH 749
Query: 447 WTDQSSLKTHGPLFYNT-----------IYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 495
W +SS + L IY L V +++ ++ S+YA++ +H
Sbjct: 750 WQTESSERMESILLGEEPTGLTDDQNLGIYIGLGMAAVFISVCKNFIYYEYSVYASRAIH 809
Query: 496 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 555
+ +++L+ PM FF P+GRIINRF +DL ID +A ++ F+ + +++T +L+
Sbjct: 810 HELFNALLKKPMYFFDQTPIGRIINRFTRDLDGIDNLIATSISTFLTLMLTVIATIILVS 869
Query: 556 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 615
I+ L + P+ ++F+ +Y+ T+R ++R+++ITRSP++ F E LNG+ +IRAYK
Sbjct: 870 IIVPFLLIPLAPISIIFFFLQYFYRYTSRGLQRIEAITRSPIFNHFSETLNGVVSIRAYK 929
Query: 616 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 675
IN K +D N L NRWL +RL+ + L+ + F + +
Sbjct: 930 KQQENILINQKRLDDNNNCYLTLQAMNRWLGLRLDFLANLITFFACIFITIDKDTIS--- 986
Query: 676 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 735
+ +GL L YAL++T L A+ E +N+VER+ YI EAP +I+ RP
Sbjct: 987 --PANVGLALGYALSLTGNLNYAALQAADTETKMNSVERISQYIRGAVEAPQIIDDCRPS 1044
Query: 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795
P WP +GSIKF+++V+RYR L PVL G++ I +K+GIVGRTGAGKSS++ LFR++
Sbjct: 1045 PDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLI 1104
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 855
E G I IDG +IAKFGL DLR+ L IIPQ PVLFSGT+R NLDPF+E S+ DL+ +E
Sbjct: 1105 EASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNERSEEDLFSTIE 1164
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
+ ++ GLD++V+E GENFSVGQRQL+ L+RALLR+ KILVLDEATA+VD ++
Sbjct: 1165 DIQMSAVVKSLEGGLDSKVTENGENFSVGQRQLIVLARALLRKPKILVLDEATASVDGQS 1224
Query: 916 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
D+LIQ TIR +F +CT+L IAHRLNTI+D DRI++LD+G++ E+D P LL N+ +
Sbjct: 1225 DSLIQATIRNKFSNCTILTIAHRLNTIMDSDRIMVLDAGKISEFDEPWTLLQNQNGLLTW 1284
Query: 976 MVQSTGAANAQYLRSL 991
+V TG NA YLR L
Sbjct: 1285 LVDETGPQNAIYLRKL 1300
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1128 | ||||||
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.972 | 0.675 | 0.877 | 0.0 | |
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.972 | 0.678 | 0.877 | 0.0 | |
| 224116630 | 1617 | multidrug resistance protein ABC transpo | 0.977 | 0.682 | 0.863 | 0.0 | |
| 255571320 | 1569 | mgatp-energized glutathione s-conjugate | 0.978 | 0.703 | 0.862 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.974 | 0.678 | 0.838 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.974 | 0.678 | 0.835 | 0.0 | |
| 357447229 | 1712 | ABC transporter C family member [Medicag | 0.974 | 0.641 | 0.840 | 0.0 | |
| 171854661 | 1617 | putative multidrug resistance-associated | 0.967 | 0.674 | 0.823 | 0.0 | |
| 297823253 | 1623 | multidrug resistance-associated protein | 0.969 | 0.674 | 0.814 | 0.0 | |
| 15226801 | 1623 | ABC transporter C family member 2 [Arabi | 0.969 | 0.674 | 0.814 | 0.0 |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1956 bits (5066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1099 (87%), Positives = 1038/1099 (94%), Gaps = 2/1099 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNAN
Sbjct: 526 NVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNAN 585
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLDIPVG L
Sbjct: 586 VSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGL 645
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NILFGS F
Sbjct: 646 VAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPF 705
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 706 EAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 765
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+
Sbjct: 766 DPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEE 825
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP +S+T K KEG
Sbjct: 826 LSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNTSKPKEG 885
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ 450
KSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWLS WTDQ
Sbjct: 886 KSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQ 945
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
+THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILRAPM+FF
Sbjct: 946 GGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFF 1005
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 570
HTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWAIMPLL+
Sbjct: 1006 HTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLV 1065
Query: 571 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD
Sbjct: 1066 LFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDN 1125
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLLLSYALN
Sbjct: 1126 NIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALN 1185
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
ITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSIKFEDVV
Sbjct: 1186 ITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVV 1245
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID DI+
Sbjct: 1246 LRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIS 1305
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGL
Sbjct: 1306 KFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGL 1365
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC
Sbjct: 1366 DAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1425
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAANA+YLRS
Sbjct: 1426 TMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAANAEYLRS 1485
Query: 991 LVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1049
LVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE+ED+N+
Sbjct: 1486 LVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLEIEDENS 1545
Query: 1050 ILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRL 1109
ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSRLARNRL
Sbjct: 1546 ILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSRLARNRL 1605
Query: 1110 HQSDYDLEERSIDWDHVEM 1128
QS+ E+RSIDWD +EM
Sbjct: 1606 -QSENGFEDRSIDWDRIEM 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1955 bits (5064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1099 (87%), Positives = 1038/1099 (94%), Gaps = 2/1099 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNAN
Sbjct: 519 NVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNAN 578
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLDIPVG L
Sbjct: 579 VSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGL 638
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NILFGS F
Sbjct: 639 VAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPF 698
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 699 EAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 758
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+
Sbjct: 759 DPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEE 818
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP +S+T K KEG
Sbjct: 819 LSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNTSKPKEG 878
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ 450
KSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWLS WTDQ
Sbjct: 879 KSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQ 938
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
+THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILRAPM+FF
Sbjct: 939 GGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFF 998
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 570
HTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWAIMPLL+
Sbjct: 999 HTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLV 1058
Query: 571 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD
Sbjct: 1059 LFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDN 1118
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLLLSYALN
Sbjct: 1119 NIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALN 1178
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
ITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSIKFEDVV
Sbjct: 1179 ITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVV 1238
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID DI+
Sbjct: 1239 LRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIS 1298
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGL
Sbjct: 1299 KFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGL 1358
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC
Sbjct: 1359 DAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1418
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAANA+YLRS
Sbjct: 1419 TMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAANAEYLRS 1478
Query: 991 LVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1049
LVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE+ED+N+
Sbjct: 1479 LVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLEIEDENS 1538
Query: 1050 ILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRL 1109
ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSRLARNRL
Sbjct: 1539 ILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSRLARNRL 1598
Query: 1110 HQSDYDLEERSIDWDHVEM 1128
QS+ E+RSIDWD +EM
Sbjct: 1599 -QSENGFEDRSIDWDRIEM 1616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116630|ref|XP_002317351.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222860416|gb|EEE97963.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1914 bits (4958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1106 (86%), Positives = 1038/1106 (93%), Gaps = 3/1106 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
SL+ CNSFILNSIPV+VTV+SFGM+TLLGG+LTPARAFTSLSLFAVLRFPLFMLPNMIT
Sbjct: 513 SLLGACNSFILNSIPVMVTVISFGMYTLLGGNLTPARAFTSLSLFAVLRFPLFMLPNMIT 572
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
QVVNANVSLKR+EE LAEE+ILLPNP L LPA+SI+NGYFSWDSKAERPTL NINLD
Sbjct: 573 QVVNANVSLKRLEELFLAEERILLPNPLLDPCLPAVSIKNGYFSWDSKAERPTLSNINLD 632
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 204
+P+GSLVA+VG TGEGKTSL+SAMLGELP SDAS VIRGTVAYVPQVSWIFNATVRDNI
Sbjct: 633 VPIGSLVAVVGSTGEGKTSLVSAMLGELPATSDASVVIRGTVAYVPQVSWIFNATVRDNI 692
Query: 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264
LFGS F+ ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 693 LFGSPFDSARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 752
Query: 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
DV+IFDDPLSALDA VGRQVFD+CI+GELS KTR+LVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 753 DVYIFDDPLSALDAQVGRQVFDKCIKGELSKKTRILVTNQLHFLSQVDRIILVHEGMVKE 812
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEASD 383
EGTFEDLSNNG LFQKLMENAGKMEEY E++ + E VD+KTS K ANGV N+LPK S
Sbjct: 813 EGTFEDLSNNGMLFQKLMENAGKMEEYEEQENN-EIVDHKTSSKQVANGVMNNLPKNVSG 871
Query: 384 TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 443
T+K KEGKSVLIKQEERETGVV+ KVL RYK+ALGG WVV++L +CY +TE LRVSSSTW
Sbjct: 872 TKKPKEGKSVLIKQEERETGVVNLKVLIRYKNALGGAWVVMVLFMCYLMTEVLRVSSSTW 931
Query: 444 LSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503
LS WT+Q + K HGPL+YN IYS LS GQV VTL NSYWLI SSLYAAKRLHDAML+SIL
Sbjct: 932 LSNWTNQGTSKRHGPLYYNLIYSFLSIGQVSVTLLNSYWLITSSLYAAKRLHDAMLNSIL 991
Query: 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563
RAPMVFFHTNPLGRIINRFAKDLGDIDRNVA+FVNMFMGQ+SQLLSTFVLIGIVSTMSLW
Sbjct: 992 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAIFVNMFMGQISQLLSTFVLIGIVSTMSLW 1051
Query: 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 623
AIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA I
Sbjct: 1052 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMASI 1111
Query: 624 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL 683
NGKSMD N+RYTLVNMGANRWLAIRLE +GG+MIW TATFAV+QNG A+NQ+AFASTMGL
Sbjct: 1112 NGKSMDNNVRYTLVNMGANRWLAIRLETLGGIMIWFTATFAVMQNGRADNQQAFASTMGL 1171
Query: 684 LLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 743
LLSYALNITSLLTAVLRLASLAENSLN+VERVG YIELPSEAPLVIESNRPPPGWPSSG+
Sbjct: 1172 LLSYALNITSLLTAVLRLASLAENSLNSVERVGTYIELPSEAPLVIESNRPPPGWPSSGA 1231
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
IKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRIL
Sbjct: 1232 IKFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1291
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
ID DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWEALERAHLKD I
Sbjct: 1292 IDDCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDVI 1351
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
RRNSLGLD++V+EAG+NFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTI
Sbjct: 1352 RRNSLGLDSEVTEAGDNFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1411
Query: 924 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 983
REEF+SCTMLIIAHRLNTIIDCDR++LLDSGRVLEYDTPEELLSNE S+FSKMVQSTGAA
Sbjct: 1412 REEFRSCTMLIIAHRLNTIIDCDRVILLDSGRVLEYDTPEELLSNENSAFSKMVQSTGAA 1471
Query: 984 NAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 1042
NAQYLRSLV+GGE E++L REENKQ+DG RRWLASSRWAAAAQ+ALAVSLTSS NDLQ+L
Sbjct: 1472 NAQYLRSLVMGGERESRLGREENKQLDGPRRWLASSRWAAAAQFALAVSLTSSQNDLQQL 1531
Query: 1043 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1102
E+ED+N++LKKTKDAVVTLQ VLEGKHDK I+ESLNQ+++S DGWWSALY+M+EGL++MS
Sbjct: 1532 EIEDENSVLKKTKDAVVTLQRVLEGKHDKVIDESLNQYQISRDGWWSALYKMVEGLAMMS 1591
Query: 1103 RLARNRLHQSDYDLEERSIDWDHVEM 1128
RL R+RLHQSDY LE+++IDW+HVEM
Sbjct: 1592 RLGRHRLHQSDYGLEDKTIDWNHVEM 1617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571320|ref|XP_002526609.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534049|gb|EEF35768.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1904 bits (4933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1107 (86%), Positives = 1039/1107 (93%), Gaps = 3/1107 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
SL+ CN FILNSIPV+VTV+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+IT
Sbjct: 463 SLLGACNGFILNSIPVVVTVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIIT 522
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
Q VNANVSLKR+EE LLAEE+ILLPNPPL PAISI+NGYFSWDSKAE PTL NIN+D
Sbjct: 523 QAVNANVSLKRLEELLLAEERILLPNPPLDPVQPAISIKNGYFSWDSKAEMPTLSNINVD 582
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-SAVIRGTVAYVPQVSWIFNATVRDN 203
IP GSLVAIVG TGEGKTSLISAMLGELP +SD SAVIRGTVAYVPQVSWIFNATVRDN
Sbjct: 583 IPTGSLVAIVGSTGEGKTSLISAMLGELPAMSDTTSAVIRGTVAYVPQVSWIFNATVRDN 642
Query: 204 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263
ILFGS F+ RYEKAIDVTSLQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSN
Sbjct: 643 ILFGSTFDSTRYEKAIDVTSLQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 702
Query: 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323
SDV+IFDDPLSALDAHV RQVFD+CI+GEL KTRVLVTNQLHFLSQVDRIILVHEGMVK
Sbjct: 703 SDVYIFDDPLSALDAHVARQVFDKCIKGELGRKTRVLVTNQLHFLSQVDRIILVHEGMVK 762
Query: 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEAS 382
EEGTFE+LSNNG +FQKLMENAGKMEEYVEEKE+GET D KTS KP ANGV ND K +
Sbjct: 763 EEGTFEELSNNGMMFQKLMENAGKMEEYVEEKENGETEDQKTSSKPVANGVANDFSKNVN 822
Query: 383 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 442
+T+ KEGKSVLIK+EERETGVVS++VL RYK+ALGG WVV+IL +CY LTE LRVSSST
Sbjct: 823 ETKNRKEGKSVLIKKEERETGVVSWRVLMRYKNALGGAWVVMILFMCYILTEVLRVSSST 882
Query: 443 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502
WLS WTD+ + K+HGPL+YN +YS+LS GQV+VTL NSYWLIISSLYAA+RLHDAML+SI
Sbjct: 883 WLSNWTDRGTTKSHGPLYYNLVYSILSVGQVMVTLLNSYWLIISSLYAARRLHDAMLNSI 942
Query: 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 562
LRAPMVFFHTNPLGRIINRFAKDLGDIDR+VA+FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 943 LRAPMVFFHTNPLGRIINRFAKDLGDIDRSVAIFVNMFLGQVSQLLSTFILIGIVSTMSL 1002
Query: 563 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 622
W+IMPLL+LFY AYLYYQSTAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1003 WSIMPLLVLFYGAYLYYQSTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1062
Query: 623 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 682
ING+SMD NIR+TLVNM ANRWLAIRLE +GG+MIWLTATFAV+QNG AENQ+AFASTMG
Sbjct: 1063 INGRSMDNNIRFTLVNMSANRWLAIRLETLGGIMIWLTATFAVMQNGRAENQQAFASTMG 1122
Query: 683 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 742
LLLSYALNIT LLT VLRLASLAENSLNAVERVG YI+LPSEAP VIE NRPPPGWPSSG
Sbjct: 1123 LLLSYALNITGLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPPVIEGNRPPPGWPSSG 1182
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
SIKFEDVVLRYRPELPPVLHGLSFT+ PSDKVGIVGRTGAGKSSMLN LFRIVELERGRI
Sbjct: 1183 SIKFEDVVLRYRPELPPVLHGLSFTVSPSDKVGIVGRTGAGKSSMLNALFRIVELERGRI 1242
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 862
LIDG+DIAKFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1243 LIDGYDIAKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1302
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
IRRNSLGL+A+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1303 IRRNSLGLNAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1362
Query: 923 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 982
IREEF+SCTMLIIAHRLNTIIDCDRILLLDSG VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1363 IREEFRSCTMLIIAHRLNTIIDCDRILLLDSGEVLEYDTPEELLSNEGSAFSKMVQSTGA 1422
Query: 983 ANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQR 1041
ANAQYLR LVLGGE E++ REENK++DGQR+W+ASSRWAAAAQ+ALAVSLTSSHNDLQR
Sbjct: 1423 ANAQYLRGLVLGGEGESRFGREENKRLDGQRKWMASSRWAAAAQFALAVSLTSSHNDLQR 1482
Query: 1042 LEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVM 1101
LE++D+N+IL+KTKDAV+TLQGVLEGKHDK IEESLNQH++S DGWWSALY+M+EGL++M
Sbjct: 1483 LEIDDENSILEKTKDAVITLQGVLEGKHDKVIEESLNQHQISKDGWWSALYKMVEGLAMM 1542
Query: 1102 SRLARNRLHQSDYDLEERSIDWDHVEM 1128
SRL RNRLHQSDY ++RSI+WD+VEM
Sbjct: 1543 SRLGRNRLHQSDYGFDDRSINWDNVEM 1569
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1858 bits (4812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 927/1106 (83%), Positives = 1016/1106 (91%), Gaps = 7/1106 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
SL+ CN FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFPLFMLPN IT
Sbjct: 520 SLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTIT 579
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
QVVNANVSLKR+E+ LLAEE++LLPNPP+ GLPAISI+NGYFSWD+KAER +L NINLD
Sbjct: 580 QVVNANVSLKRLEDLLLAEERVLLPNPPIEPGLPAISIKNGYFSWDAKAERASLSNINLD 639
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 204
IPVG LVA+VG TGEGKTSL+SAMLGELPP++D+S V+RGTVAYVPQVSWIFNATVRDNI
Sbjct: 640 IPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSSVVLRGTVAYVPQVSWIFNATVRDNI 699
Query: 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264
LFGS F+PARY++AI+VT LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSVFDPARYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
DV+IFDDPLSALDAHV RQVFD+CI+G+L GKTRVLVTNQLHFLSQV+RIILVHEGMVKE
Sbjct: 760 DVYIFDDPLSALDAHVARQVFDKCIKGDLRGKTRVLVTNQLHFLSQVNRIILVHEGMVKE 819
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDNK-TSKPAANGVDNDLPKEAS 382
EGTFE+LSN+G LFQKLMENAGKMEEY EE K D ET D K +SKP ANG ND K S
Sbjct: 820 EGTFEELSNHGPLFQKLMENAGKMEEYEEEEKVDTETTDQKPSSKPVANGAINDHAKSGS 879
Query: 383 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 442
K KEGKSVLIKQEER TGVVS VL+RYK ALGG WVV +L CY TETLR+SSST
Sbjct: 880 ---KPKEGKSVLIKQEERATGVVSLNVLTRYKSALGGFWVVFVLFACYVSTETLRISSST 936
Query: 443 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502
WLS+WTDQS+ + + P+FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SI
Sbjct: 937 WLSHWTDQSATEGYNPVFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSI 996
Query: 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 562
LRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 997 LRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSL 1056
Query: 563 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 622
WAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1057 WAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1116
Query: 623 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 682
INGKSMD NIR+TLVNM NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMG
Sbjct: 1117 INGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMG 1176
Query: 683 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 742
LLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP VI++NRPPPGWPS G
Sbjct: 1177 LLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIDNNRPPPGWPSLG 1236
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
SI+FEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE+GRI
Sbjct: 1237 SIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEQGRI 1296
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 862
LID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1297 LIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1356
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 923 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 982
IREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1417 IREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGA 1476
Query: 983 ANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 1042
AN+QYLRSL LGG+ REENK +D +R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRL
Sbjct: 1477 ANSQYLRSLALGGDKSE--REENKHLDARRKWLASSRWAAAAQFALAVSLTSSHNDLQRL 1534
Query: 1043 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1102
EVED+N+ILKKTKDA++TLQGVLE KHDKEIEESL Q ++S DGWWS+LY+MIEGL++MS
Sbjct: 1535 EVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPDGWWSSLYKMIEGLAIMS 1594
Query: 1103 RLARNRLHQSDYDLEERSIDWDHVEM 1128
RL NR HQSD+ E+RSI++D V+M
Sbjct: 1595 RLTVNRFHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1845 bits (4780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 924/1106 (83%), Positives = 1016/1106 (91%), Gaps = 7/1106 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
SL+ CN+FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFPLFMLPN IT
Sbjct: 520 SLLGACNAFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTIT 579
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
QVVNANVSLKR+E+ LLAEE+ILL NPPL GLPAISI+NGYFSWD+KAER TL NINLD
Sbjct: 580 QVVNANVSLKRLEDLLLAEERILLSNPPLEPGLPAISIKNGYFSWDTKAERATLSNINLD 639
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 204
IPVG LVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFNATVRDN+
Sbjct: 640 IPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVLRGTVAYVPQVSWIFNATVRDNV 699
Query: 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264
LFGS F+P RYE+AI+VT LQHDL+LLPGGD TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSVFDPTRYERAINVTELQHDLELLPGGDHTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
DV+IFDDPLSALDAHV RQVFD+CI+G+L KTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 760 DVYIFDDPLSALDAHVARQVFDKCIKGDLREKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNK--TSKPAANGVDNDLPKEAS 382
EGTFE+LSN+G LFQKLMENAGKMEEY EE++ ++ +S+P ANG ND K S
Sbjct: 820 EGTFEELSNHGLLFQKLMENAGKMEEYEEEEKVVTETTDQKPSSEPVANGSVNDHAKSGS 879
Query: 383 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 442
K KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV +L CY TETLR+SSST
Sbjct: 880 ---KPKEGKSVLIKQEERETGVVSWNVLLRYKNALGGFWVVFVLFACYVSTETLRISSST 936
Query: 443 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502
WLS+WTDQS+ K + P FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SI
Sbjct: 937 WLSHWTDQSATKGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSI 996
Query: 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 562
LRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 997 LRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSL 1056
Query: 563 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 622
WAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1057 WAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1116
Query: 623 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 682
INGKSMD NIR+TLVN+ NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMG
Sbjct: 1117 INGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMG 1176
Query: 683 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 742
LLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP +I+ NRPPPGWPSSG
Sbjct: 1177 LLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSG 1236
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
SI+FEDVVLRYR ELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRI
Sbjct: 1237 SIRFEDVVLRYRAELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 862
LID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1297 LIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1356
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 923 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 982
IREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1417 IREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGA 1476
Query: 983 ANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 1042
ANAQYLRSL LGG+ REEN+ +DG+R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRL
Sbjct: 1477 ANAQYLRSLALGGDKSE--REENEHLDGKRKWLASSRWAAAAQFALAVSLTSSHNDLQRL 1534
Query: 1043 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1102
EVED+N+ILKKTKDA++TLQGVLE K+DKEIEESLNQ +VS +GWWS+LY+MIEGL++MS
Sbjct: 1535 EVEDENSILKKTKDALITLQGVLERKYDKEIEESLNQRQVSPEGWWSSLYKMIEGLAMMS 1594
Query: 1103 RLARNRLHQSDYDLEERSIDWDHVEM 1128
RLA+NRLHQSD+ E+RSI++D V+M
Sbjct: 1595 RLAKNRLHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447229|ref|XP_003593890.1| ABC transporter C family member [Medicago truncatula] gi|355482938|gb|AES64141.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1845 bits (4779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 929/1105 (84%), Positives = 1018/1105 (92%), Gaps = 6/1105 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
SL+ CNSFILNSIPV VTV+SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+IT
Sbjct: 613 SLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIIT 672
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
QVVNANVSLKR+EE LLAEE+ILLPNPPL GLPAISIRNGYFSWD+KAER TL NINLD
Sbjct: 673 QVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIRNGYFSWDAKAERATLSNINLD 732
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 204
IPVGSLVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFNATVRDN+
Sbjct: 733 IPVGSLVAVVGSTGEGKTSLVSAMLGELPPIADSTVVLRGTVAYVPQVSWIFNATVRDNV 792
Query: 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264
LFGS F+P RYE+AI+VT L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 793 LFGSVFDPIRYERAINVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 852
Query: 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
DV +FDDPLSALDAHV RQVFD+CI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 853 DVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 912
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEASD 383
EGTFE+LS+ G LFQKLMENAGKMEEY EEK D E D K+S KP NG ND K S
Sbjct: 913 EGTFEELSSQGLLFQKLMENAGKMEEYEEEKVDIEATDQKSSSKPVVNGAVNDNAKSES- 971
Query: 384 TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 443
K K GKS+LIKQEERETGVVS VL RYK+ALGG WV+L+L CYF TE LRVSSSTW
Sbjct: 972 --KPKGGKSILIKQEERETGVVSLNVLIRYKNALGGTWVILVLFACYFSTEALRVSSSTW 1029
Query: 444 LSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503
LS+WTDQS++ + P FYN +Y+ LSFGQV V+L NSYWLIISSLYAA+RLH+AMLHSIL
Sbjct: 1030 LSHWTDQSAVDGYNPAFYNLVYAALSFGQVFVSLINSYWLIISSLYAARRLHEAMLHSIL 1089
Query: 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563
RAPMVFFHTNPLGR+INRFAKDLGDIDRNVA FV+MF+GQ+SQLLSTF+LIGIVSTMSLW
Sbjct: 1090 RAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTFILIGIVSTMSLW 1149
Query: 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 623
AIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADI
Sbjct: 1150 AIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADI 1209
Query: 624 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL 683
NG+SMD NIRYTLVN+ ANRWLAIRLE +GGLMIW TATFAV+QNG AENQ+ FASTMGL
Sbjct: 1210 NGRSMDNNIRYTLVNISANRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQEFASTMGL 1269
Query: 684 LLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 743
LLSYALNITSLLT VLRLASLAENSLN+VERVG YI+LPSEAP VI+ NRPPPGWPSSGS
Sbjct: 1270 LLSYALNITSLLTGVLRLASLAENSLNSVERVGTYIDLPSEAPSVIDDNRPPPGWPSSGS 1329
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
IKF++VVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE+GRIL
Sbjct: 1330 IKFDEVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEKGRIL 1389
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
ID DIAKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD I
Sbjct: 1390 IDDRDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVI 1449
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
RRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTI
Sbjct: 1450 RRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1509
Query: 924 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 983
REEFKSCTMLIIAHRLNTIIDCDR+LLLD G+VLEY+TPEELLSNEGS+FSKMVQSTGAA
Sbjct: 1510 REEFKSCTMLIIAHRLNTIIDCDRVLLLDGGKVLEYNTPEELLSNEGSAFSKMVQSTGAA 1569
Query: 984 NAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLE 1043
NAQYLRSLV GG+ REEN+ +DGQR+WLASSRWAAAAQYALAVSLTSS NDLQRLE
Sbjct: 1570 NAQYLRSLVHGGDKTE--REENQHLDGQRKWLASSRWAAAAQYALAVSLTSSQNDLQRLE 1627
Query: 1044 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1103
VED+N+ILKKTKDA++TLQGVLE KHDKEIEESLNQ ++S++GWWS+LY+MIEGL++MSR
Sbjct: 1628 VEDENSILKKTKDALITLQGVLERKHDKEIEESLNQRQISSEGWWSSLYKMIEGLAMMSR 1687
Query: 1104 LARNRLHQSDYDLEERSIDWDHVEM 1128
LARNRLHQSD+ E+ SI++D ++M
Sbjct: 1688 LARNRLHQSDFGFEDTSINFDQIDM 1712
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854661|dbj|BAG16520.1| putative multidrug resistance-associated protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 1812 bits (4694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1099 (82%), Positives = 1006/1099 (91%), Gaps = 8/1099 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
NSFILNSIPV+V V+SFG+F+LLGGDLTPARAFT+LSLFAVLRFPLFMLPN+ITQVVNAN
Sbjct: 526 NSFILNSIPVVVIVISFGVFSLLGGDLTPARAFTALSLFAVLRFPLFMLPNIITQVVNAN 585
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+E+ LLAEE+ILLPNPPL GLPAISI+NG FSW+SKAE+PTL NINLDIP+GSL
Sbjct: 586 VSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGCFSWESKAEKPTLSNINLDIPIGSL 645
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSLISAMLGELP SD+ VIRGTVAYVPQVSWIFNATVR+NILFGSA
Sbjct: 646 VAIVGGTGEGKTSLISAMLGELPSFSDSVVVIRGTVAYVPQVSWIFNATVRENILFGSAI 705
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ ARY +AIDVT+L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV IFD
Sbjct: 706 DAARYNRAIDVTALRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCIFD 765
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDA VGRQVF+RCIR EL GKTRVLVTNQLHFLSQVD+IILVH+GMVKEEGTFE
Sbjct: 766 DPLSALDADVGRQVFERCIREELKGKTRVLVTNQLHFLSQVDKIILVHDGMVKEEGTFEY 825
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKE-DGETVDNKTSKPAANGVDNDLPKEASDTRKTKE 389
LSNNG LFQKLMENAGKMEEY EEKE DG ++K+SKP NG N + KE + KE
Sbjct: 826 LSNNGVLFQKLMENAGKMEEYTEEKENDG---NDKSSKPVVNGEANGVAKEVG--KDKKE 880
Query: 390 GKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 449
GKSVLIKQEERETGVVS+ VL RYK+ALGG WVV+IL +CYFL E LRV SSTWLS+WTD
Sbjct: 881 GKSVLIKQEERETGVVSWNVLMRYKNALGGSWVVIILFVCYFLIEALRVGSSTWLSFWTD 940
Query: 450 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVF 509
QSS + FYN IYSLLS GQV+VTL NS+WLI SSLYAAK LHDAML SILRAPMVF
Sbjct: 941 QSSSTRYSAGFYNLIYSLLSLGQVMVTLMNSFWLITSSLYAAKMLHDAMLGSILRAPMVF 1000
Query: 510 FHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 569
FHTNPLGRIINRFAKDLGDIDRNVA FV+MF+GQV QL+STFVLIGIVSTMSLWAIMPLL
Sbjct: 1001 FHTNPLGRIINRFAKDLGDIDRNVAPFVSMFLGQVFQLISTFVLIGIVSTMSLWAIMPLL 1060
Query: 570 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 629
+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGL+TIRAYKAYDRMA+INGKS+D
Sbjct: 1061 VLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLATIRAYKAYDRMANINGKSVD 1120
Query: 630 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYAL 689
NIR+TLVNM NRWLAIRLE VGG+MIWLTATFAVVQNG AENQ+AFASTMGLLLSYAL
Sbjct: 1121 NNIRFTLVNMSGNRWLAIRLETVGGVMIWLTATFAVVQNGRAENQQAFASTMGLLLSYAL 1180
Query: 690 NITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDV 749
NITSLLTAVLRLASLAENSLNAVERVG YIELPSE P +IE +RPPPGWPS+GSI+FE+V
Sbjct: 1181 NITSLLTAVLRLASLAENSLNAVERVGTYIELPSEGPSIIEGSRPPPGWPSAGSIRFENV 1240
Query: 750 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809
VLRYRPELPPVLHG+SFTI PSDKVG+VGRTGAGKSSM N LFR+VE ERGRILID D+
Sbjct: 1241 VLRYRPELPPVLHGISFTISPSDKVGVVGRTGAGKSSMFNALFRLVEPERGRILIDDCDV 1300
Query: 810 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 869
+KFGL DLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD IRRNSLG
Sbjct: 1301 SKFGLTDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLG 1360
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
LDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS
Sbjct: 1361 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1420
Query: 930 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLR 989
CTMLIIAHRLNTIIDCDRILLL+SG++LEYDTPE LL EGS+FS+MVQSTGAANAQYLR
Sbjct: 1421 CTMLIIAHRLNTIIDCDRILLLESGQLLEYDTPEVLLQKEGSAFSRMVQSTGAANAQYLR 1480
Query: 990 SLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1049
SLV GGE N + +KQ+DGQRRWLAS+RWAAAAQ+ALAV+LTSS NDL +LE+ED++N
Sbjct: 1481 SLVFGGEEGNSI-ARDKQLDGQRRWLASTRWAAAAQFALAVTLTSSQNDLVQLEIEDEDN 1539
Query: 1050 ILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRL 1109
ILKKTK+AV+TLQGVLEGKHDK+IEE+L+Q++VS D WWS+LY+MIEGL++MS+LARNRL
Sbjct: 1540 ILKKTKNAVITLQGVLEGKHDKDIEETLDQYQVSRDRWWSSLYKMIEGLAMMSKLARNRL 1599
Query: 1110 HQSDYDLEERSIDWDHVEM 1128
Q++++ ++++I+WD EM
Sbjct: 1600 -QAEFEFDDKTINWDRAEM 1617
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823253|ref|XP_002879509.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297325348|gb|EFH55768.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1808 bits (4682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1103 (81%), Positives = 999/1103 (90%), Gaps = 9/1103 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNAN
Sbjct: 525 NMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSL
Sbjct: 585 VSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVR+NILFGS F
Sbjct: 645 VAVVGSTGEGKTSLISAILGELPATSDAMVTLRGSVAYVPQVSWIFNATVRENILFGSPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+ IDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYS+SDV+IFD
Sbjct: 705 DREKYERVIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL+ KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELAQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LSNNG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD +K+KEG
Sbjct: 825 LSNNGPLFQRLMENAGKVEEYSEENGEAEA-DQAVVQPVANGNTNGLQMDGSDDKKSKEG 883
Query: 391 -----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS 445
KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+SSTWLS
Sbjct: 884 NKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLS 943
Query: 446 YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505
WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRA
Sbjct: 944 EWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRA 1003
Query: 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 565
PM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAI
Sbjct: 1004 PMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAI 1063
Query: 566 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625
MPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING
Sbjct: 1064 MPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADING 1123
Query: 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 685
+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLL
Sbjct: 1124 RSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLL 1183
Query: 686 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIK 745
SYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAPLVIE+NRPPPGWPSSGSIK
Sbjct: 1184 SYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPLVIENNRPPPGWPSSGSIK 1243
Query: 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
FEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID
Sbjct: 1244 FEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILID 1303
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRR
Sbjct: 1304 ECDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRR 1363
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
N LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE
Sbjct: 1364 NPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1423
Query: 926 EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
EFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA
Sbjct: 1424 EFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANA 1483
Query: 986 QYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVE 1045
+YLRSLVL + + R++++ + GQR+WLASSRWAAAAQ+ALAVSLTSSHNDLQ LE+E
Sbjct: 1484 EYLRSLVLDNK---RARDDSQHLQGQRKWLASSRWAAAAQFALAVSLTSSHNDLQSLEIE 1540
Query: 1046 DQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLA 1105
D ++ILK+T DAVVTL+ VLEGKHDKEI ESL + +S +GW S+LYRM+EGL+VMSRLA
Sbjct: 1541 DDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEERNISKEGWLSSLYRMVEGLAVMSRLA 1600
Query: 1106 RNRLHQSDYDLEERSIDWDHVEM 1128
RNR+ Q DY+ E + DWD+VEM
Sbjct: 1601 RNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226801|ref|NP_181013.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|334184682|ref|NP_001189675.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|90103509|sp|Q42093.2|AB2C_ARATH RecName: Full=ABC transporter C family member 2; Short=ABC transporter ABCC.2; Short=AtABCC2; AltName: Full=ATP-energized glutathione S-conjugate pump 2; AltName: Full=Glutathione S-conjugate-transporting ATPase 2; AltName: Full=Multidrug resistance-associated protein 2 gi|3132479|gb|AAC16268.1| ABC transporter (AtMRP2) [Arabidopsis thaliana] gi|330253911|gb|AEC09005.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|330253912|gb|AEC09006.1| ABC transporter C family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1807 bits (4681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1103 (81%), Positives = 997/1103 (90%), Gaps = 9/1103 (0%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNAN
Sbjct: 525 NMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSL
Sbjct: 585 VSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNILFGS F
Sbjct: 645 VAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 705 DREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD +K+KEG
Sbjct: 825 LSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDDKKSKEG 883
Query: 391 -----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS 445
KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+SSTWLS
Sbjct: 884 NKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLS 943
Query: 446 YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505
WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRA
Sbjct: 944 EWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRA 1003
Query: 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 565
PM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAI
Sbjct: 1004 PMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAI 1063
Query: 566 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625
MPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING
Sbjct: 1064 MPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADING 1123
Query: 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 685
+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLL
Sbjct: 1124 RSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLL 1183
Query: 686 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIK 745
SYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWPSSGSIK
Sbjct: 1184 SYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIK 1243
Query: 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
FEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID
Sbjct: 1244 FEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILID 1303
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRR
Sbjct: 1304 DCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRR 1363
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
N LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE
Sbjct: 1364 NPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1423
Query: 926 EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
EFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA
Sbjct: 1424 EFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANA 1483
Query: 986 QYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVE 1045
+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SLTSSHNDLQ LE+E
Sbjct: 1484 EYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIE 1540
Query: 1046 DQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLA 1105
D ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+VMSRLA
Sbjct: 1541 DDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLA 1600
Query: 1106 RNRLHQSDYDLEERSIDWDHVEM 1128
RNR+ Q DY+ E + DWD+VEM
Sbjct: 1601 RNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1128 | ||||||
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.969 | 0.674 | 0.770 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.972 | 0.676 | 0.746 | 0.0 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.849 | 0.640 | 0.709 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.518 | 0.373 | 0.443 | 6.3e-203 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.531 | 0.388 | 0.415 | 4.6e-198 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.519 | 0.379 | 0.423 | 5.3e-197 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.585 | 0.427 | 0.384 | 6.7e-197 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.516 | 0.377 | 0.413 | 1.4e-194 | |
| RGD|2366 | 1541 | Abcc2 "ATP-binding cassette, s | 0.528 | 0.386 | 0.420 | 3e-194 | |
| UNIPROTKB|Q92887 | 1545 | ABCC2 "Canalicular multispecif | 0.580 | 0.423 | 0.384 | 1.9e-192 |
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4322 (1526.5 bits), Expect = 0., P = 0.
Identities = 850/1103 (77%), Positives = 944/1103 (85%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNAN
Sbjct: 525 NMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSL
Sbjct: 585 VSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNILFGS F
Sbjct: 645 VAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFD
Sbjct: 705 DREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD +K+KEG
Sbjct: 825 LSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDDKKSKEG 883
Query: 391 -----KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLS 445
KSVLIKQEERETGVVS++VL RY+DA CY LTE RV+SSTWLS
Sbjct: 884 NKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLS 943
Query: 446 YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505
WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRA
Sbjct: 944 EWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRA 1003
Query: 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 565
PM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAI
Sbjct: 1004 PMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAI 1063
Query: 566 MPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625
MP Q+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING
Sbjct: 1064 MPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADING 1123
Query: 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 685
+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLL
Sbjct: 1124 RSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLL 1183
Query: 686 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIK 745
SYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWPSSGSIK
Sbjct: 1184 SYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIK 1243
Query: 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
FEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID
Sbjct: 1244 FEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILID 1303
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRR
Sbjct: 1304 DCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRR 1363
Query: 866 NSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE 925
N LGLDA+VSEAGENFSVGQRQ KILVLDEATAAVDVRTDALIQKTIRE
Sbjct: 1364 NPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1423
Query: 926 EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
EFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA
Sbjct: 1424 EFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANA 1483
Query: 986 QYLRSLVLGGEAENKLREENKQIDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDLQRLEVE 1045
+YLRSLVL + + ++++ + G SLTSSHNDLQ LE+E
Sbjct: 1484 EYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIE 1540
Query: 1046 DQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLA 1105
D ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+VMSRLA
Sbjct: 1541 DDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLA 1600
Query: 1106 RNRLHQSDYDLEERSIDWDHVEM 1128
RNR+ Q DY+ E + DWD+VEM
Sbjct: 1601 RNRMQQPDYNFEGNTFDWDNVEM 1623
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4224 (1492.0 bits), Expect = 0., P = 0.
Identities = 820/1099 (74%), Positives = 937/1099 (85%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFPLFMLPN+ITQ+VNAN
Sbjct: 525 NMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNAN 584
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLDIP+GSL
Sbjct: 585 VSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSL 644
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNILFG+ F
Sbjct: 645 VAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPF 704
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV I D
Sbjct: 705 DQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILD 764
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKEEGT+E+
Sbjct: 765 DPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTYEE 824
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L K+ +T+ +KEG
Sbjct: 825 LCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIETKNSKEG 883
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQ 450
SVL+K+EERETGVVS+KVL RY++A CY LT+ RVSSSTWLS WTD
Sbjct: 884 NSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEWTDS 943
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
+ KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILRAPMVFF
Sbjct: 944 GTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILRAPMVFF 1003
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXX 570
TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWAIMP
Sbjct: 1004 QTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWAIMPLLV 1063
Query: 571 XXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
Q+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+ING+SMD
Sbjct: 1064 VFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDN 1123
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLLLSYAL+
Sbjct: 1124 NIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALS 1183
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSIKFEDVV
Sbjct: 1184 ITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVV 1243
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILID DI
Sbjct: 1244 LRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIG 1303
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
+FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IRRN LGL
Sbjct: 1304 RFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGL 1363
Query: 871 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+V+EAGENFSVGQRQ KILVLDEATAAVDVRTD LIQKTIREEFKSC
Sbjct: 1364 DAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIREEFKSC 1423
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG ANA+YLRS
Sbjct: 1424 TMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTANAEYLRS 1483
Query: 991 LVLGGEAENKLREENKQ-IDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDLQRLEVEDQNN 1049
+ L + + ++ Q ++G VSLTSSHNDLQ LE+ED N+
Sbjct: 1484 ITLENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDLQSLEIEDDNS 1543
Query: 1050 ILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRL 1109
ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+VMSRLARNR+
Sbjct: 1544 ILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLAVMSRLARNRM 1603
Query: 1110 HQSDYDLEERSIDWDHVEM 1128
DY+LE +S DWD+VEM
Sbjct: 1604 QHPDYNLEGKSFDWDNVEM 1622
|
|
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3455 (1221.3 bits), Expect = 0., P = 0.
Identities = 683/962 (70%), Positives = 785/962 (81%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR PL LPN+I+Q VNAN
Sbjct: 526 NSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNAN 585
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
VSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVGSL
Sbjct: 586 VSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSL 645
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
VAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NILFGS F
Sbjct: 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDF 705
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNSD++IFD
Sbjct: 706 ESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD 765
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
DP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEEG F +
Sbjct: 766 DPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGNFAE 825
Query: 331 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG 390
LS +G LF+KLMENAGKM+ E + E + +K V + ++ K G
Sbjct: 826 LSKSGTLFKKLMENAGKMDATQEVNTNDENI-SKLGPTVTIDVSE---RSLGSIQQGKWG 881
Query: 391 KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQ 450
+S+L+KQEERETG++S+ V+ RY A CY TE LRV SSTWLS WTDQ
Sbjct: 882 RSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTDQ 941
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
S+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRAPM+FF
Sbjct: 942 STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFF 1001
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXX 570
TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWAIMP
Sbjct: 1002 ETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLI 1061
Query: 571 XXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK 630
QST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA INGKSMD
Sbjct: 1062 LFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLLLSY LN
Sbjct: 1122 NIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLLLSYTLN 1181
Query: 691 ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 750
IT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI+FEDV
Sbjct: 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIQFEDVH 1241
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILID +D+A
Sbjct: 1242 LRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILIDDYDVA 1301
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
KFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I RN GL
Sbjct: 1302 KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGL 1361
Query: 871 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
DA+VSE GENFSVGQRQ KIL LDEATA+VDVRTD+LIQ+TIREEFKSC
Sbjct: 1362 DAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSC 1421
Query: 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 990
TMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N QYL +
Sbjct: 1422 TMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPENGQYLSN 1481
Query: 991 LV 992
LV
Sbjct: 1482 LV 1483
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 266/600 (44%), Positives = 371/600 (61%)
Query: 388 KEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYW 447
K+G+ LI++E ETG V F V +Y A YF+ + + WLS W
Sbjct: 964 KKGQR-LIEKEMMETGRVKFSVYLQYLSAMGWWYVGFSFVF-YFIQNVAVIGQNLWLSDW 1021
Query: 448 TDQSSL---KTHGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501
TD S +T+ +T ++ L Q + + L S+ A++ LH ++L +
Sbjct: 1022 TDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTN 1081
Query: 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 561
IL+ PM+FF T P GRI+NRFAKD+ +D + + ++ + +L T +I + + +
Sbjct: 1082 ILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIF 1141
Query: 562 LWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 621
++P +T+R+++RLDS++RSP+Y+ FGE ++GLS IRAY DR
Sbjct: 1142 TAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFL 1201
Query: 622 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTM 681
N ++D+N++ + +NRWLA+RLE +G L+++ A FAV+ S + +
Sbjct: 1202 KHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNS-----GLV 1256
Query: 682 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 741
GL +SYALN+T L ++R+ S E ++ AVERV Y E+ +EAP V S RPP WPS+
Sbjct: 1257 GLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPSA 1315
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G+I+FED +RYRPEL VLHG++ I ++K+GIVGRTGAGKSS+ N LFRIVE GR
Sbjct: 1316 GNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGR 1375
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 861
ILID DIA GL DLR L IIPQ PVLFSGT+R NLDPF SDA++W LE AHLK+
Sbjct: 1376 ILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKE 1435
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQK 921
+R GL+ +VSE GEN S+GQRQ +IL+LDEATAAVD+ TD LIQ
Sbjct: 1436 YVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQS 1495
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981
TIR EF CT+L IAHRLNTI+D R+++LDSG+++E+D+P ELLS G FS M + G
Sbjct: 1496 TIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPGH-FSSMAEDAG 1554
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 258/621 (41%), Positives = 374/621 (60%)
Query: 375 NDLPKEASDTRKTKE----GKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 430
N L +T K +E G+ LIK+E +TG V F + +Y A Y
Sbjct: 928 NSLKTRNVNTLKEEEEPVKGQK-LIKKEFIQTGKVKFSIYLKYLRAIGWYLIFLIIFA-Y 985
Query: 431 FLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ-VLVTLANSYWL 483
+ + S+ WLS WT+ S T+ P +Y +L Q V V +AN
Sbjct: 986 VINSVAYIGSNLWLSAWTNDSKAFNGTNYPASQRDMRIGVYGVLGLAQGVFVLMANLL-S 1044
Query: 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 543
S +A+ LH +L++IL+APM FF T P GRI+NRFA D+ +D + + ++
Sbjct: 1045 AHGSTHASNILHRQLLNNILQAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWILC 1104
Query: 544 VSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGE 603
++ST V+I + + + I+P +T+R++KRLDS+TRSP+Y+ F E
Sbjct: 1105 FLGIISTLVMICTATPVFIIVIIPLSIIYVSIQIFYVATSRQLKRLDSVTRSPIYSHFSE 1164
Query: 604 ALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 663
++GLS IRA++ R N +D N + + +NRWLA+RLE++G L+++ ++
Sbjct: 1165 TVSGLSVIRAFEHQQRFLKHNEVGIDTNQKCVFSWIVSNRWLAVRLELIGNLIVFFSSLM 1224
Query: 664 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 723
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +
Sbjct: 1225 MVIYKATLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIKVEN 1279
Query: 724 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 783
EAP V + RPPPGWPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAG
Sbjct: 1280 EAPWVTDK-RPPPGWPSKGEIRFNNYQVRYRPELDLVLRGITCDIRSMEKIGVVGRTGAG 1338
Query: 784 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 843
KSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+
Sbjct: 1339 KSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFN 1398
Query: 844 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILV 903
+SD ++W+ALE AHLK + LGL +V+EAG+N S+GQRQ KIL+
Sbjct: 1399 HYSDEEIWKALELAHLKTFVAGLQLGLSHEVAEAGDNLSIGQRQLLCLARALLRKSKILI 1458
Query: 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 963
+DEATAAVD+ TD LIQ TI++EF CT + IAHRL+TI+D D+I++LD+G+++EY +P+
Sbjct: 1459 MDEATAAVDLETDHLIQMTIQKEFSHCTTITIAHRLHTIMDSDKIIVLDNGKIVEYGSPQ 1518
Query: 964 ELLSNEGSSFSKMVQSTGAAN 984
ELL N G F M + G N
Sbjct: 1519 ELLRNSGP-FYLMAKEAGIEN 1538
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 5.3e-197, Sum P(2) = 5.3e-197
Identities = 254/600 (42%), Positives = 363/600 (60%)
Query: 394 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 453
LIK+E ETG V F + +Y A Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVGWWSLLFIVIF-YVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 454 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 507
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 508 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 567
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 568 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 627
+T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 628 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 687
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGD-----TVGFVLSN 1242
Query: 688 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 747
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFN 1301
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 807
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 808 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 867
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 868 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 927
LGL +V+E G+N S+GQRQ KILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 928 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 987
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGP-FYLMAKEAGIESVNH 1540
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 6.7e-197, Sum P(2) = 6.7e-197
Identities = 262/682 (38%), Positives = 390/682 (57%)
Query: 317 VHEGMVKEEGTF-EDLSNNG-ELFQKLMENAGKMEEYVEEKEDGETVD--NKTSKPAANG 372
V E ++E T ED + EL + EN E +T+ +++S
Sbjct: 865 VKEAGPEDEATVNEDSEEDACELMPSVEENPEDAASLKRENSLRQTLSRSSRSSSRRLKS 924
Query: 373 VDNDLPKEASDTRKTKEGKSV----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXX 428
+ + L + K +E + V LIK+E +TG V F + +Y A
Sbjct: 925 LKDSLKTRKGNILKEEETEPVKGQKLIKKEFLQTGKVKFSIYLKYLQAIGWCSIVFIVLG 984
Query: 429 CYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYW 482
+ L + S+ WLS WT S + T+ P ++ L Q + L +
Sbjct: 985 -FMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQGIFVLIATLC 1043
Query: 483 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 542
+ +A+ LH +L +ILRAPM FF T P+GRI+NRFA D+ +D + + + ++
Sbjct: 1044 SVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDTLPMSLRSWLM 1103
Query: 543 QVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFG 602
++ST V+I + + + + I+P +T+R+++RLDS+TRSP+Y+ F
Sbjct: 1104 CFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSVTRSPIYSHFS 1163
Query: 603 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTAT 662
E ++GL IRA++ R N ++D N + + +NRWLA+RLE +G ++++ ++
Sbjct: 1164 ETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFIGNMIVFCSSL 1223
Query: 663 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI +
Sbjct: 1224 MMVIYRNTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIHVE 1278
Query: 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 782
+EAP V + RPP GWPS G I+F + +RYRPEL VL G++ I ++K+G+VGRTGA
Sbjct: 1279 NEAPWVTDK-RPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGA 1337
Query: 783 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 842
GKSS+ N+LFRI+E G+I IDG DIA GL DLR+ L IIPQ P+LFSGT+R NLDPF
Sbjct: 1338 GKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLRMNLDPF 1397
Query: 843 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKIL 902
+ +SD +LW+ALE AHLK + LGL +V+E G+N S+GQRQ KIL
Sbjct: 1398 NSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKIL 1457
Query: 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962
++DEATAAVD+ TD LIQ TI+ EF CT + IAHRL+TI+D D++++LD+G +++YD+P
Sbjct: 1458 IMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNIVQYDSP 1517
Query: 963 EELLSNEGSSFSKMVQSTGAAN 984
EELL G F M Q G N
Sbjct: 1518 EELLKTPGP-FYYMAQEAGIEN 1538
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 247/597 (41%), Positives = 360/597 (60%)
Query: 394 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 453
LIK+E +TG V F + +Y A + + + S+ WLS WT S +
Sbjct: 949 LIKKEFVQTGKVKFSIYLKYLQAIGWCSIVFILLG-FVIYYVAFIGSNLWLSAWTSDSKI 1007
Query: 454 K--THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 507
T+ P +Y L Q L + W + +A+ LH +L++ILRAPM
Sbjct: 1008 YNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPM 1067
Query: 508 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 567
FF T P+GRI+NRFA DL +D + + + + ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVIIP 1127
Query: 568 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 627
+T+R+++RLDS+TRSP+Y+ F E ++GLS IRA++ R + +
Sbjct: 1128 LGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETA 1187
Query: 628 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 687
+D N + + +NRWLA+RLE++G L+++ + V+ + T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNLSGD-----TVGFVLSN 1242
Query: 688 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 747
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + RPP GWPS G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDK-RPPEGWPSKGEIQFS 1301
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 807
+ +RYRPEL VL G++ I ++K+G+VGRTGAGKSS+ N LFRI+E G+I IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGV 1361
Query: 808 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 867
DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE +HLK +
Sbjct: 1362 DIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQ 1421
Query: 868 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 927
GL +V+E G+N S+GQRQ KIL++DEATAAVD+ TD LIQ TI+ EF
Sbjct: 1422 AGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEF 1481
Query: 928 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 984
CT + IAHRL+TI+D D++++LDSG+++EYD+PEELL N G F M Q G N
Sbjct: 1482 SHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLKNPGP-FYFMAQEAGIEN 1537
|
|
| RGD|2366 Abcc2 "ATP-binding cassette, subfamily C (CFTR/MRP), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 3.0e-194, Sum P(2) = 3.0e-194
Identities = 257/611 (42%), Positives = 368/611 (60%)
Query: 383 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSST 442
+ K EG+ LIK+E ETG V F + +Y A Y L + S+
Sbjct: 937 EKEKEVEGQK-LIKKEFVETGKVKFSIYLKYLQAVGWWSILFIILF-YGLNNVAFIGSNL 994
Query: 443 WLSYWT-DQSSLK-THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 496
WLS WT D +L T+ + ++ L Q + L ++ W I + A+K LH
Sbjct: 995 WLSAWTSDSDNLNGTNNSSSHRDMRIGVFGALGLAQGICLLISTLWSIYACRNASKALHG 1054
Query: 497 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 556
+L +ILRAPM FF T P GRI+NRF+ D+ +D + + +M + T V+I +
Sbjct: 1055 QLLTNILRAPMRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICM 1114
Query: 557 VSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 616
+ + I+P +T+R+++RLDS+T+SP+Y+ F E + GL IRA++
Sbjct: 1115 ATPVFAIIIIPLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEH 1174
Query: 617 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 676
R N K +D N + + +NRWLAIRLE+VG L+++ +A V+ +
Sbjct: 1175 QQRFLAWNEKQIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLTGD-- 1232
Query: 677 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 736
+G +LS ALNIT L ++R+ S AE ++ AVER+ YI + +EAP V + RPP
Sbjct: 1233 ---VVGFVLSNALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTDK-RPPA 1288
Query: 737 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796
WP G I+F + +RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E
Sbjct: 1289 DWPRHGEIQFNNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILE 1348
Query: 797 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 856
G+I+IDG D+A GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE
Sbjct: 1349 SAGGQIIIDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALEL 1408
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTD 916
AHL+ + LGL ++V+E G+N S+GQRQ KILVLDEATAAVD+ TD
Sbjct: 1409 AHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETD 1468
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+LIQ TIR+EF CT++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN GS F M
Sbjct: 1469 SLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRGS-FYLM 1527
Query: 977 VQSTGAANAQY 987
+ G N +
Sbjct: 1528 AKEAGIENVNH 1538
|
|
| UNIPROTKB|Q92887 ABCC2 "Canalicular multispecific organic anion transporter 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 1.9e-192, Sum P(2) = 1.9e-192
Identities = 261/679 (38%), Positives = 384/679 (56%)
Query: 317 VHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-KTSKPAANGVDN 375
VH+G +E+ + +S+ E+ + + E + N + K N +
Sbjct: 874 VHDGSEEEDDDYGLISSVEEIPEDAASITMRRENSFRRTLSRSSRSNGRHLKSLRNSLKT 933
Query: 376 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTET 435
+ + +G+ LIK+E ETG V F + Y A + +
Sbjct: 934 RNVNSLKEDEELVKGQK-LIKKEFIETGKVKFSIYLEYLQAIGLFSIFFIILA-FVMNSV 991
Query: 436 LRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLY 489
+ S+ WLS WT S + T P +Y L Q + +W ++
Sbjct: 992 AFIGSNLWLSAWTSDSKIFNSTDYPASQRDMRVGVYGALGLAQGIFVFIAHFWSAFGFVH 1051
Query: 490 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDID----RNVAVFVNMFMGQVS 545
A+ LH +L++ILRAPM FF T P GRI+NRFA D+ +D +++ ++ F+G
Sbjct: 1052 ASNILHKQLLNNILRAPMRFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWITCFLG--- 1108
Query: 546 QLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEAL 605
++ST V+I + + + ++P ST+R+++RLDS+TRSP+Y+ F E +
Sbjct: 1109 -IISTLVMICMATPVFTIIVIPLGIIYVSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETV 1167
Query: 606 NGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 665
+GL IRA++ R N +D N + + +NRWLAIRLE+VG L ++ +A V
Sbjct: 1168 SGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMV 1227
Query: 666 VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEA 725
+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ Y ++ +EA
Sbjct: 1228 IYRDTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYTKVENEA 1282
Query: 726 PLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 785
P V + RPPP WPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAGKS
Sbjct: 1283 PWVTDK-RPPPDWPSKGKIQFNNYQVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKS 1341
Query: 786 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845
S+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +
Sbjct: 1342 SLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNY 1401
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLD 905
SD ++W+ALE AHLK + LGL +V+EAG N S+GQRQ KILVLD
Sbjct: 1402 SDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLD 1461
Query: 906 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965
EATAAVD+ TD LIQ TI+ EF CT++ IAHRL+TI+D D++++LD+G+++E +PEEL
Sbjct: 1462 EATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEEL 1521
Query: 966 LSNEGSSFSKMVQSTGAAN 984
L G F M + G N
Sbjct: 1522 LQIPGP-FYFMAKEAGIEN 1539
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q42093 | AB2C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.8141 | 0.9698 | 0.6740 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00028389001 | SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1135 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1128 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.0 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-129 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-102 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-97 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-79 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-78 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-76 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-74 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-64 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-64 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-59 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-57 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-56 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-55 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-55 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-55 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-55 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-53 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-53 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-51 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-51 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-50 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-49 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-49 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-49 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-49 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-47 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-47 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-46 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-43 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-42 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-42 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-41 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-40 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-39 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-39 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-39 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-38 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-37 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-36 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-36 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-35 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 9e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-31 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-30 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-30 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-28 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-28 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-28 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-27 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-26 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-25 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-24 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-24 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-24 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-23 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-23 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-23 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-23 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-22 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-22 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-22 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-22 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-22 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-21 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-21 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 9e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-19 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-15 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-15 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-13 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-11 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-11 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-10 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 6e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 7e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.004 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2299 bits (5959), Expect = 0.0
Identities = 953/1104 (86%), Positives = 1031/1104 (93%), Gaps = 1/1104 (0%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 84
L+ NSFILNSIPVLVTVVSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+IT
Sbjct: 520 QLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579
Query: 85 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
Q VNANVSLKR+EE LLAEE++LLPNPPL GLPAISI+NGYFSWDSKAERPTL NINLD
Sbjct: 580 QAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLD 639
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 204
+PVGSLVAIVG TGEGKTSLISAMLGELPP SDAS VIRGTVAYVPQVSWIFNATVRDNI
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNI 699
Query: 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264
LFGS F+P RYE+AIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
DV+IFDDPLSALDAHVGRQVFD+CI+ EL GKTRVLVTNQLHFLSQVDRIILVHEGM+KE
Sbjct: 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 384
EGT+E+LSNNG LFQKLMENAGKMEEYVEE E D +SKP ANG N+L K++S
Sbjct: 820 EGTYEELSNNGPLFQKLMENAGKMEEYVEE-NGEEEDDQTSSKPVANGNANNLKKDSSSK 878
Query: 385 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 444
+K+KEGKSVLIKQEERETGVVS+KVL RYK+ALGG WVV+IL LCY LTE RVSSSTWL
Sbjct: 879 KKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWL 938
Query: 445 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 504
S WTDQ + KTHGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAKRLHDAML SILR
Sbjct: 939 SEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 505 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 564
APM FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF+GQ+ QLLSTFVLIGIVST+SLWA
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 565 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 624
IMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA+IN
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEIN 1118
Query: 625 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 684
G+SMD NIR+TLVNM +NRWLAIRLE +GGLMIWLTA+FAV+QNG AENQ AFASTMGLL
Sbjct: 1119 GRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLL 1178
Query: 685 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 744
LSYALNITSLLTAVLRLASLAENSLNAVERVG YI+LPSEAPLVIE+NRPPPGWPSSGSI
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804
KFEDVVLRYRPELPPVLHGLSF I PS+KVGIVGRTGAGKSSMLN LFRIVELERGRILI
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 805 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864
DG DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD IR
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR 1358
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
RNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIR
Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418
Query: 925 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 984
EEFKSCTMLIIAHRLNTIIDCDRIL+LD+GRV+E+DTPE LLSNEGS+FSKMVQSTGAAN
Sbjct: 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAAN 1478
Query: 985 AQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEV 1044
AQYLRSLV GG+ + REE+K +DGQR+WLASSRWAAAAQ+ALAVSLTSS NDLQ LE+
Sbjct: 1479 AQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEI 1538
Query: 1045 EDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRL 1104
ED+N+IL+KTKDAV+TLQ VLEGKHDKEI+ESLNQ +V DGWWS+LYRM+EGL+VMSRL
Sbjct: 1539 EDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRL 1598
Query: 1105 ARNRLHQSDYDLEERSIDWDHVEM 1128
ARNR+ QSD++ E +SIDWD+VEM
Sbjct: 1599 ARNRMQQSDHNFEGKSIDWDNVEM 1622
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 1657 bits (4293), Expect = 0.0
Identities = 732/968 (75%), Positives = 837/968 (86%), Gaps = 4/968 (0%)
Query: 26 LILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQ 85
L+ NSFILNSIPV+VT+VSFG+F LLGGDLTPARAFTSLSLFAVLR PL MLPN+++Q
Sbjct: 521 LLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580
Query: 86 VVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDI 145
VVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+I
Sbjct: 581 VVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEI 640
Query: 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL 205
PVGSLVAIVGGTGEGKTSLISAMLGEL +S VIRG+VAYVPQVSWIFNATVR+NIL
Sbjct: 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENIL 700
Query: 206 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265
FGS FE RY +AIDVT+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNSD
Sbjct: 701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760
Query: 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325
++IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEE
Sbjct: 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820
Query: 326 GTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTR 385
GTF +LS +G LF+KLMENAGKM+ E + E + + V + T+
Sbjct: 821 GTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTID-VSE---RNLGSTK 876
Query: 386 KTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS 445
+ K G+SVL+KQEERETG++S+ VL RY A+GGLWVV+ILL+CY TE LRVSSSTWLS
Sbjct: 877 QGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLS 936
Query: 446 YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505
WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRA
Sbjct: 937 IWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRA 996
Query: 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 565
PM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWAI
Sbjct: 997 PMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAI 1056
Query: 566 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625
MPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA ING
Sbjct: 1057 MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKING 1116
Query: 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 685
KSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV++NG+AENQ FASTMGLLL
Sbjct: 1117 KSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLL 1176
Query: 686 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIK 745
SY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSIK
Sbjct: 1177 SYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIK 1236
Query: 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN LFRIVELE+GRI+ID
Sbjct: 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMID 1296
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I R
Sbjct: 1297 DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR 1356
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
N GLDA+VSE GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIRE
Sbjct: 1357 NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416
Query: 926 EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 985
EFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV STG ANA
Sbjct: 1417 EFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANA 1476
Query: 986 QYLRSLVL 993
QYL +LV
Sbjct: 1477 QYLSNLVF 1484
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 817 bits (2111), Expect = 0.0
Identities = 401/982 (40%), Positives = 593/982 (60%), Gaps = 50/982 (5%)
Query: 39 PVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRM 96
P LV +++F ++ + + L +AF SL+LF +LRFPL +LP +I+ +V A+VSLKR+
Sbjct: 551 PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRL 610
Query: 97 EEFLLAEEKILLPNP----PLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 151
FL EE L P+ + G +I++ N F+W ++ PTL I IP G+LV
Sbjct: 611 RIFLSHEE--LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALV 667
Query: 152 AIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFE 211
A+VG G GK+SL+SA+L E+ V + ++G+VAYVPQ +WI N ++R+NILFG A
Sbjct: 668 AVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALN 726
Query: 212 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
Y++ ++ +L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDD
Sbjct: 727 EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 786
Query: 272 PLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE 329
PLSA+DAHVG+ +F+ I G L KTR+LVT+ + +L QVD II++ G + E G+++
Sbjct: 787 PLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQ 846
Query: 330 DLSNNGELFQKLMENAGKMEEYVEEKEDG---ETVDNKTSKPAANG------VDNDLPKE 380
+L F + + E+ ++ + + K +K NG V L ++
Sbjct: 847 ELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQ 906
Query: 381 ASDTRKTKEGKS-------------------VLIKQEERETGVVSFKVLSRYKDALGGLW 421
S + +S L++ ++ +TG V V Y A+G L+
Sbjct: 907 LSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LF 965
Query: 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLAN 479
+ + + + ++S+ WLS WTD + + ++Y L Q
Sbjct: 966 ITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGY 1025
Query: 480 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539
S + I + A++ LH +LH+ LR+PM FF P G ++NRF+K+L +D + + M
Sbjct: 1026 SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKM 1085
Query: 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 599
FMG + ++ ++I + + ++ I PL LL++ +Y +++R++KRL+S++RSPVY+
Sbjct: 1086 FMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYS 1145
Query: 600 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 659
F E L G+S IRA++ +R + +D+N + ++ ANRWLA+RLE VG ++
Sbjct: 1146 HFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLF 1205
Query: 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 719
A FAV+ S A +GL +SY+L +T L ++R++S E ++ AVER+ Y
Sbjct: 1206 AALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYS 1260
Query: 720 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 779
E EAP I+ PP GWP G ++F + LRYR +L VL ++ TI +KVGIVGR
Sbjct: 1261 ETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGR 1320
Query: 780 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839
TGAGKSS+ LFRI E G I+IDG +IAK GL DLR + IIPQ PVLFSG++R NL
Sbjct: 1321 TGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380
Query: 840 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899
DPFS++SD ++W ALE AHLK + LD + +E GEN SVGQRQL+ L+RALLR++
Sbjct: 1381 DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440
Query: 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959
KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHRLNTI+D R+++LD G V E+
Sbjct: 1441 KILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500
Query: 960 DTPEELLSNEGSSFSKMVQSTG 981
P LL G F M + G
Sbjct: 1501 GAPSNLLQQRG-IFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 638 bits (1647), Expect = 0.0
Identities = 323/900 (35%), Positives = 493/900 (54%), Gaps = 58/900 (6%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197
L ++++ +P G L ++G TG GK++L+ ++L + +S+ ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257
ATVR NILF + AR A+ V+ L+ DL L GG TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 317
RAVY+N DV++ DDPLSALDAHVG +V + C G L+GKTRVL T+Q+H + + D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 318 HEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTSKPAANGV 373
+G V+ G+ D S L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 374 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 433
+ E D L+ +EE+ +G V + Y GGL +L + +T
Sbjct: 915 KQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVT 974
Query: 434 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 493
E + VSS WLS W+ +S + Y + G VL+ + S A +R
Sbjct: 975 ELVTVSSGVWLSMWSTRSFKLS------AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRR 1028
Query: 494 ----LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 549
+H +L S+ R M FF T PLGRI+NRF++D+ +D + M + Q L
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT----LPMSYLYLLQCLF 1084
Query: 550 TFVLIGIVSTMS----LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 605
+ +V++ S L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 606 NGLSTIRAYKAYDRMADINGKSMDK-NIRYTLVNM--GANRWLAIRLEIVGGLMIWLTAT 662
G +TI AY + + +++ + ++ Y+ + ANRWL +R+E + +++ + A
Sbjct: 1145 QGSATI---TAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 663 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI-EL 721
V+ + + L L+ A+ T+ L ++R + E +N+VER+ Y E+
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 722 PSEA-----------------------PLVIESNRPPPGWP---SSGSIKFEDVVLRYRP 755
P E +VIE P P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 756 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815
LP VL G+SF I P +KVGIVGRTG+GKS++L T R+VE+ G I ++G +I +GL
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380
Query: 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 875
+LR+ +IPQ PVLF GTVR N+DPF E S A++W ALE L++ + S G+D++V
Sbjct: 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 876 EAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934
E G N+SVGQRQL+ ++RALL++ S +++DEATA +D D IQ T+ F + T++
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 935 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLG 994
IAHRL+T+ D+I+++D G V E +P EL+ N S F MV++ G + A+ LV
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-129
Identities = 152/221 (68%), Positives = 178/221 (80%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G I+F++V LRYRP LPPVL +SF+I P +KVGIVGRTG+GKSS+L LFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 861
ILIDG DI+K GL DLR + IIPQ PVLFSGT+R NLDPF E+SD +LW+ALER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ GLD V E GEN SVGQRQLL L+RALLR+SKILVLDEATA+VD TDALIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962
TIRE FK CT+L IAHRL+TIID DRIL+LD GRV+E+D+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 172/565 (30%), Positives = 280/565 (49%), Gaps = 13/565 (2%)
Query: 421 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 480
++L+ +L L+ L + + D L + LL+ ++ S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 481 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 540
Y L + +LR P+ FF G +I+R D+ + V+ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 541 MGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 599
+ L+ + VL+ +S ++L ++ L LL +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 600 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 659
+ E+L+G+ I+A+ A DR ++ ++ R L LA + ++ L L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 719
+ + + Y L + + + + + SL + + A ER+
Sbjct: 253 VLALGGFL---VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL---F 306
Query: 720 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 779
EL E P V + P + GSI+FE+V Y + PVL +SF+I P +KV IVG
Sbjct: 307 ELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 780 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839
+G+GKS+++ L R+ + G ILIDG DI L LRK +GI+ Q P+LFSGT+R N+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 840 DPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898
+ +D ++ EAL+ A+ + I G D V E G N S GQRQ L+++RALLR
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
IL+LDEAT+A+D T+ALIQ +++ K T LIIAHRL+TI + DRI++LD+GR++E
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 959 YDTPEELLSNEGSSFSKMVQSTGAA 983
T EELL+ G ++++ Q+ G A
Sbjct: 544 RGTHEELLAKGG-LYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-102
Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 120 ISIRNGYFSWDSKAER--PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
IS+ + F+WDS + TL +INL++P G LVAIVG G GK+SL+SA+LGEL +S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 178 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+ +V G++AYV Q WI N T+R+NILFG F+ RYEK I +L+ DL++LP GD+T
Sbjct: 61 SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 296
EIGE+G+N+SGGQKQR+S+ARAVYS++D+++ DDPLSA+DAHVGR +F+ CI G L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 297 TRVLVTNQLHFLSQVDRIILVHEG 320
TR+LVT+QL L D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 307 bits (787), Expect = 3e-97
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797
WP G I+ E++ +RY P+LPPVL +SF + +K+GIVGRTGAGKS+++ LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 798 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 857
E G+I IDG DI+ L DLR L IIPQ P LFSGT+R NLDPF E+SD +++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
VSE G N S GQRQLL L+RALL+R ++LVLDEATA++D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962
LIQKTIREEF + T+L IAHRL TIID D+IL++D+G V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 1e-79
Identities = 183/635 (28%), Positives = 317/635 (49%), Gaps = 48/635 (7%)
Query: 380 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 439
E S+ ++ K + E ++ RY L VLI L FL E
Sbjct: 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASL 885
Query: 440 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW----------------- 482
WL + + S V++T ++Y+
Sbjct: 886 LGLWLITDNPSAPNYVDQQ--HANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGF 943
Query: 483 -----LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 537
L+ + L +KRLH+ MLHS+L+APM +T GRI+NRF KD+ ID + + +
Sbjct: 944 FRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Query: 538 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPV 597
F+ +L ++ ++ A +P+ ++F Y+ T++++K+L+S RSP+
Sbjct: 1004 FDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPI 1063
Query: 598 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 657
++ +L GL TIRA+ + K+++ + + + RW +R++I+ +
Sbjct: 1064 FSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF-VFF 1122
Query: 658 WLTATF-AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 716
++ TF A+ N E + +G++L+ A+NI S L + + + + +V RV
Sbjct: 1123 FIAVTFIAIGTNQDGEGE------VGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176
Query: 717 NYIELPSEAP--------------LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 762
+I+LP E P LVIE+ WPS G + + + +Y VL
Sbjct: 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822
LSF++ +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G
Sbjct: 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
Query: 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 882
+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + LD + + G S
Sbjct: 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942
G +QL+ L+R++L ++KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 943 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977
++C + L+++ V +YD+ ++LL NE S F + +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 4e-78
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 44/523 (8%)
Query: 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 526
L + + L+ L +Y + L +LR P+ +F +G II+R
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV---- 257
Query: 527 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW------AIMPLL-LLFYAAYLYY 579
++++ + + LL + + ++ S A +PL L+
Sbjct: 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
Query: 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM----ADINGKSMDKNIRYT 635
+ R++ + + E + G+ T++A A R + K ++ +
Sbjct: 318 RRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 636 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE-------AFASTMGLLLSYA 688
+ + N ++ ++ L++W A + E AF G +S
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGAILVL-------EGELTLGQLVAFNMLAGYFISPI 426
Query: 689 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 748
++ L T + A+ER+G+ ++ P E G I+FE+
Sbjct: 427 TRLSQLWTDFQQA-------KVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 749 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 808
V RY P+ PPVL LS IPP +KV IVGR+G+GKS++L L + + ++GRIL+DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 809 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNS 867
+ L LR+ +G + Q P LFSG++R N+ + +D ++ EA + A + I
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927
+G D V E G N S GQRQ L+L+RALL + KIL+LDEAT+A+D T+A+I + + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 928 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
+ T++IIAHRL+TI DRI++LD G+++E + EELL+ G
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 7e-76
Identities = 119/238 (50%), Positives = 165/238 (69%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G IK D+ +RY L PVL + I P KVGI GRTG+GKSS+ FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 861
I+IDG DI+K L LR L II Q P+LFSG++RFNLDP + +D LWEALE A LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
++ GLDA V+E GENFSVGQRQL L+RA +R+S IL++DEATA++D+ T+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+ F T++ IAHR++TI+D D +L+L G ++E DTPE LL+ E F+ +V++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 2e-74
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G I+FE+V Y + P VL ++F+I P + V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW-EALERAHLK 860
ILIDG DI LR ++G++ Q LFSGT+ N+ ++ + EA + A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D I + G D + E G N S G+RQLL+++RA+LR KIL+LDEAT+ +D T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 921 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
+ + + K T +IIAHRL+TI + D+IL+LD G+++E T +ELL+ +G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 3e-64
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 41/212 (19%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+F++V Y PVL +S TI P +KV IVG +G+GKS++L L R+ + G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
IDG D+ L LRK + +PQ P LFSGT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
S GQRQ ++++RALLR IL+LDEAT+A+D T+ALI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 924 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 955
R K T+++IAHRL+TI D DRI++LD GR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 6e-64
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 5/230 (2%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++F++V RY + PPVL +S IP + V +VG +G+GKS+++N + R +++ GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 860
IDG D+ + L LR+ +G++ Q LF+ TV N+ P + ++ EA A+
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAH 118
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+ I G D + E G S GQRQ ++++RALL+ IL+LDEAT+A+D ++ L+Q
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 921 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
+ K+ T +IAHRL+TI + DRI++L+ G+++E T EELL+ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-63
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+FE+V Y P P VL +SFTIP KV IVG +G+GKS++L LFR ++ G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 860
IDG DI + L LR+ +G++PQ VLF+ T+ +N+ P + +D ++ EA + A +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D I R G D V E G S G++Q ++++RA+L+ IL+LDEAT+A+D T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 921 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+R+ K T ++IAHRL+TI++ D+I++L GR++E T EELL +G +++M
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 3e-59
Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 52/472 (11%)
Query: 539 MFMGQVSQL-------LSTFVLIGIVSTMSLWAI--------------MPLLLLFYAAYL 577
+ + + QL L L IV + L AI PL+ LF +
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-V 160
Query: 578 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD-INGKSMD------K 630
+ K+ ++ R + F + L GL T+RA+ + + I S D
Sbjct: 161 GLAAKDASEKQFSALAR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218
Query: 631 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 690
+R ++ LE L I L A + + + FA L+L+
Sbjct: 219 VLRIAFLSSAV-------LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA---- 267
Query: 691 ITSLLTAVLRLASL---AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 747
+ L S A A +++ +E P P + I E
Sbjct: 268 -PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLE 324
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 807
++ RY P+ P L L+ TI +VG +GAGKS++LN L + +G I ++G
Sbjct: 325 NLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 808 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRN 866
D+ RK + + Q+P LF+GT+R N+ + SD ++ AL++A L + + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926
GLD + E G S GQ Q L+L+RALL + +L+LDE TA +D T+ +I + ++E
Sbjct: 444 -DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 927 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978
K T+L+I HRL D DRI++LD+GR++E T EEL +G ++ +++
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLLK 553
|
Length = 559 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 6e-57
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 20/220 (9%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL------- 172
+ + NGYFSW S TL NIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 173 ---------PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 223
P + R +VAY Q W+ NATV +NI FGS F RY+ D S
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
LQ D+DLLP GD TEIGERG+N+SGGQ+QR+ +ARA+Y N+++ DDP SALD H+
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 284 VFDRCIRGELSG--KTRVLVTNQLHFLSQVDRIILVHEGM 321
+ I L +T VLVT++L +L D II + +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-56
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G I+F +V Y + P L +S TI +KV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 858
+L+DG DI + DLR+ +G +PQ LF GT+R N+ P D + A E A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
+ D + ++ GLD Q+ E G S GQRQ ++L+RALL IL+LDE T+A+D+ ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956
+++ +R+ T++II HR + + DRI+++DSGR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 7e-56
Identities = 137/507 (27%), Positives = 240/507 (47%), Gaps = 38/507 (7%)
Query: 480 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539
+Y L S + + M +L P+ FF P G +++R D + + +
Sbjct: 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV---ASAATDA 131
Query: 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 599
F+ V + L+ L ++ S W + ++++ KRL I++ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYS-WQLTLIVVVMLPVLSILMRRVS--KRLRRISKEIQNS 188
Query: 600 Q------FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 653
E L G ++ + R+ V+ NR LA+++ G
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETR----------RFDAVS-NRNRRLAMKMTSAG 237
Query: 654 GL---MIWLTATFAVVQNGSAENQEAFAS--TMGLLLSYALNITSLLTAVLRLASLA--- 705
+ + L A+ A+ +A A T G ++ + +L+ + L ++
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 706 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 765
+ L A E + ++ P E R + G ++F +V RY P L +S
Sbjct: 298 QRGLAAAESLFTLLDSPPEKD---TGTRAIE--RARGDVEFRNVTFRYPGRDRPALDSIS 352
Query: 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825
I P + V +VGR+G+GKS+++N + R E + G+IL+DG D+A + L LR+ + ++
Sbjct: 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 826 QSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883
Q VLF+ T+ N+ + A++ AL A+ +D + + LGLD + E G S
Sbjct: 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943
GQRQ L+++RALL+ + IL+LDEAT+A+D ++ L+Q + + T L+IAHRL+TI
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532
Query: 944 DCDRILLLDSGRVLEYDTPEELLSNEG 970
DRI+++D GR++E T ELL+ G
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 1e-55
Identities = 100/242 (41%), Positives = 156/242 (64%), Gaps = 13/242 (5%)
Query: 744 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
I+F++V RY RP++P +L GLS TIPP V +VG +G GKS++++ L R + G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 858
IL+DG DI L LR +G++ Q PVLF GT+ N+ P + +D ++ EA ++A+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKAN 117
Query: 859 LKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+ D I SL G D V E G S GQ+Q ++++RALLR KIL+LDEAT+A+D ++
Sbjct: 118 IHDFI--MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
L+Q+ + K T ++IAHRL+TI + D I +L +G+V+E T +EL++ +G ++K+
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 977 VQ 978
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 3e-55
Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)
Query: 516 GRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVL--IGIVSTMSLWAIMPLL 569
G ++NR D+ +D R +A V V + T L I + L I+ LL
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 570 LLFY--AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 627
LL Y + + R+ + +QF + + G + + + A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 628 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 687
++ L ++ GL++ + + A + + LL+ +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLV-IGLLLWMAAQVGAGALAQPGAALALLVIF 286
Query: 688 ALNITSLLTAVLRLASLA----ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 743
A L A LA A + + R+ ++ + P V + + +
Sbjct: 287 AA-----LEAFEPLAPGAFQHLGQVIASARRLN---DILDQKPEVTFPDEQTA--TTGQA 336
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ +V Y + L + T+ +KV I+GR+G+GKS++L L + ++G I
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 862
++G +IA LR+ + ++ Q LFSGT+R NL + SD +LW AL++ L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
+ GL+ + E G S G+R+ L+L+RALL + + +LDE T +D T+ +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 923 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978
+ E + T+L++ HRL + DRI++LD+G+++E T ELL+N G + ++ Q
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG-RYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 9e-55
Identities = 159/603 (26%), Positives = 283/603 (46%), Gaps = 66/603 (10%)
Query: 397 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL------RVSSSTWLSYWTDQ 450
Q + ET + F++L L + L L E RV L D+
Sbjct: 140 QGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVID--TLG--GDK 195
Query: 451 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 510
+F+ + S+ S V L + + R+ + + S+LR + FF
Sbjct: 196 GPPALASAIFFMCLLSIASS--VSAGLRGGSFNYTMARINL-RIREDLFRSLLRQDLGFF 252
Query: 511 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMP 567
N G + +R + D + R++++ VN+ + + LL + +S TM +P
Sbjct: 253 DENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312
Query: 568 LLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA-----------YK 615
L+ L + YQ + E++ +++ ++ A+ EAL+G+ T+R+ +
Sbjct: 313 LVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKE 368
Query: 616 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 675
A + +N + Y ++G L+ V+ G Q
Sbjct: 369 ALEETLQLNKRKALAYAGYLWTT-----------SVLGMLIQ-----VLVLYYGG---QL 409
Query: 676 AFASTM--GLLLSYALNITSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVIE 730
+ G L+S+ L L AV L+ + + AV E+V Y++ PL
Sbjct: 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469
Query: 731 SNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 788
P G I+F+DV Y RP++P VL GL+FT+ P + V +VG +G+GKS++
Sbjct: 470 -LAPLN---LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 789 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSD 847
L + + G++L+DG + ++ L + + ++ Q PVLFSG+VR N+ ++ D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 848 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
++ A + A+ D I G D +V E G S GQ+Q ++++RAL+R+ ++L+LDEA
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
T+A+D + L+Q++ S T+L+IAHRL+T+ D+IL+L G V+E T ++L+
Sbjct: 645 TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 968 NEG 970
++G
Sbjct: 703 DQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 9e-55
Identities = 139/499 (27%), Positives = 250/499 (50%), Gaps = 44/499 (8%)
Query: 498 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 557
+ +L P+ +F + +G + R ++L I RN + V LL V + ++
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVAR-VRELEQI-RNF--LTGSALTVVLDLLFVVVFLAVM 273
Query: 558 ---STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ--FGEALNGLSTIR 612
S ++ L+ + ++ R KR++ A E++ G+ TI+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILR--KRVEDKFERSAAATSFLVESVTGIETIK 331
Query: 613 AYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRL--EIVGGLMIWLTATFAVVQN 668
A + + + + + + + N+G AI L ++ +++W A +V
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH--LVIG 389
Query: 669 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSE- 724
G+ + G L+++ + + VLRLA L ++ + A+ER+G+ + P+E
Sbjct: 390 GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 725 --APLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 782
A L G+I FE++ RY P+ P VL L+ I P + +GIVG +G+
Sbjct: 442 RSAGLAALPEL-------RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 783 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 839
GKS++ L R+ + G++L+DG D+A LR+ +G++ Q VLFS ++R N+
Sbjct: 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554
Query: 840 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899
+P + A + A D I G + +V E G N S GQRQ ++++RAL+
Sbjct: 555 NP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959
+IL+ DEAT+A+D ++ALI + +RE + T++IIAHRL+T+ CDRI++L+ G++ E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 960 DTPEELLSNEGSSFSKMVQ 978
EELL+ ++++ Q
Sbjct: 673 GRHEELLA-LQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 3e-53
Identities = 109/377 (28%), Positives = 191/377 (50%), Gaps = 29/377 (7%)
Query: 603 EALNGLSTIRAYKAYDRMA----DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 658
E+L+GL TI+A A R ++ ++ A + ++V ++
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV- 387
Query: 659 LTATFAVVQNGSAENQEAFASTMG------LLLSYALNITSLLTAVLRLASLAENSLNAV 712
+ + + ++ + TMG +L AL L +L A+ +L ++
Sbjct: 388 VVGVYLI-----SDGE----LTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSL 438
Query: 713 ERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPS 771
+ ++LP E P P G I+F +V Y + P L +S TI P
Sbjct: 439 DE---LMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPG 491
Query: 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831
+KV I+GR G+GKS++L L + + G +L+DG DI + DLR+ +G +PQ P LF
Sbjct: 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551
Query: 832 SGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890
GT+R N+ + + D ++ A E A + + +RR+ GLD Q+ E G + S GQRQ ++
Sbjct: 552 YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611
Query: 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950
L+RALLR IL+LDE T+A+D R++ + ++ T++++ HR + + DRI++
Sbjct: 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV 671
Query: 951 LDSGRVLEYDTPEELLS 967
+D+GR++ +++L
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 7e-53
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 728 VIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 786
V ++ PP WP G++ F +V Y P P+L+G+SFTIP V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 787 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH- 845
+L LFR ++ G I IDG DI LR+ +GI+PQ VLF+ T+ +N+
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
+ ++ A E A + D I+ G D V E G S G++Q ++++R +L+ IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 906 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965
EAT+A+D T+ IQ +RE T L+IAHRL+TIID D I++LD+GR++E T EEL
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 966 LSNEG 970
L+ G
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-52
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 41/481 (8%)
Query: 509 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAI 565
FF N G +++R D + + ++M + + +++ I S T +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 566 MPLLLLFYAAYLYYQSTAREVKRL-----DSITRSPVYAQFGEALNGLSTIRAYKAYDRM 620
+PL+LL + R V++L D I + YA GE L + T++A+ D
Sbjct: 168 VPLVLLPILLF------GRRVRKLSRESQDRIADAGSYA--GETLGAIRTVQAFGHEDAE 219
Query: 621 ADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGG---LMIWLTATFAVVQNGSAENQEA 676
G +++K + L AI + +V G ++W+ A V G
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH--DVIAGKMS---- 273
Query: 677 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-- 734
A T+G + YA+ + + + + + + A ER+ IEL P + P
Sbjct: 274 -AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKT 329
Query: 735 PPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 792
P P G I+FE V Y RP+ P L GL+ T+ P + V +VG +GAGKS++ L
Sbjct: 330 LPV-PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 793 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 849
R + + GRIL+DG D+ + +LR + ++PQ PVLF+ +V N+ P + +D +
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEE 445
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
+ A AH + I G D + E G S GQRQ ++++RA+L+ + IL+LDEAT+
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 910 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969
A+D ++ L+Q+ + K T LIIAHRL T++ DRI+++D GR++ T EL++
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
Query: 970 G 970
G
Sbjct: 566 G 566
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 6e-52
Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L+ R++ E G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 861
I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
I + LD + + G S G +QL+ L+R++L ++KIL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980
T+++ F CT+++ HR+ +++C R L+++ +V +YD+ ++LL NE S F + + +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAISPS 237
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-52
Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR 183
N +FS P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIK 95
Query: 184 --GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
G +++ Q SWI T+++NI+FG +++ RY+ + L+ D+ P D T +GE
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 301
G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LV
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 302 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 355
T+++ L + D+I+++HEG GTF +L + F + +++ E+
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAER 269
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 1e-51
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I FE V RY+P+ P +L +S I P + VGIVGR+G+GKS++ + R E GR+L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA- 862
+DG D+A LR+ +G++ Q VLF+ ++R N+ + +E A L A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA--LADPGMSMERVIEAAKLAGAH 118
Query: 863 --IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
I G D V E G S GQRQ ++++RAL+ +IL+ DEAT+A+D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 921 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
+ + + T++IIAHRL+T+ + DRI++++ GR++E + +ELL+ G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-51
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 733 RPPPGWPS----SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 788
R PPG G+++F+DV Y + +SF P V IVG TGAGKS+++
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 789 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SD 847
N L R+ + + GRILIDG DI LR+ + ++ Q LF+ ++ N+ +D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 848 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
++ A ERA D I R G D V E G S G+RQ L+++RALL+ IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
T+A+DV T+A ++ + E K T IIAHRL+T+ + DRIL+ D+GRV+E + +E L
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE-LV 557
Query: 968 NEGSSFSKMVQSTGAAN 984
G F+ ++++ G
Sbjct: 558 ARGGRFAALLRAQGMLQ 574
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 7e-50
Identities = 146/545 (26%), Positives = 249/545 (45%), Gaps = 97/545 (17%)
Query: 469 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 528
+ G LA S ++ L A+ +LR P+ FF G + +R
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA------ 239
Query: 529 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY--------------- 573
M + Q+ ++LS L ++S ++A++ L L+FY
Sbjct: 240 ----------MGISQIRRILSGSTLTTLLS--GIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 574 -------AAY--LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAD 622
+ + E+ ++ +T + +NG+S +R A +R A
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFAR 339
Query: 623 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 682
R L + + + L+ A V+ + + FA+ +
Sbjct: 340 WAK------------LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL-----FAAAIS 382
Query: 683 LLLSYALNI----------TSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVI 729
LL L++ S AV +L++ + L + ER +E E +
Sbjct: 383 LLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----V 438
Query: 730 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 789
+ + PG SG+I+ + V RYRP+ P +L +S I P + V IVG +G+GKS
Sbjct: 439 DEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS---- 493
Query: 790 TLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845
TL R++ E G + DG D+A + +R+ LG++ Q+ L SG++ N+ +
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
+ + WEA A L + IR +G+ +SE G S GQRQ L ++RAL+R+ +IL+ D
Sbjct: 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 906 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965
EAT+A+D RT A++ +++ E T ++IAHRL+TI + DRI +LD+GRV++ T +EL
Sbjct: 614 EATSALDNRTQAIVSESL--ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671
Query: 966 LSNEG 970
++ EG
Sbjct: 672 MAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-49
Identities = 98/317 (30%), Positives = 160/317 (50%), Gaps = 16/317 (5%)
Query: 40 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 99
V V++ G F +L G LT + L P+ L +++ + A+ + +R+ E
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFEL 308
Query: 100 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 159
L E ++ P PL + +I N FS+ K +P L +I+ I G VAIVG +G
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEPGEKVAIVGPSGS 366
Query: 160 GKTSLISAMLGELPPVS--------DASAVI----RGTVAYVPQVSWIFNATVRDNILFG 207
GK++LI +L P S D + R + V Q +F+ T+R+NI G
Sbjct: 367 GKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALG 426
Query: 208 SA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266
E+A+ + + + LP G T +GERGVN+SGGQ+QR+++ARA+ N +
Sbjct: 427 RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486
Query: 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326
I D+ SALD + D ++ L G+T +++ ++L + DRII++ G + E G
Sbjct: 487 LILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545
Query: 327 TFEDLSNNGELFQKLME 343
T E+L G L+ +L +
Sbjct: 546 THEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-49
Identities = 145/499 (29%), Positives = 229/499 (45%), Gaps = 54/499 (10%)
Query: 498 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ-VSQLLSTFVLIGI 556
L ILR P+ FF G I +R ++ VA F++ GQ + L +L+
Sbjct: 233 FLWHILRLPVRFFAQRHAGDIASRV-----QLNDQVAEFLS---GQLATTALDAVMLVFY 284
Query: 557 VSTMSLW-AIMPLLLLFYAA----YLYYQSTARE--VKRLDSITRSPVYAQFGEALNGLS 609
M L+ ++ L+ + +AA L S R +RL + G A++GL
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQ 340
Query: 610 TIRAYKAYDRMADINGKSMDKNIRYTLVNMG-----ANRWLAIRLEIVGGL--MIWLTAT 662
+I KA +D + + L+N + L + ++ L + L
Sbjct: 341 SIETLKASGLESDFFSRW--AGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398
Query: 663 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA------ENSLNAVERVG 716
V G T+G+L+++ ++S L V L E LN ++ V
Sbjct: 399 GLRVMEGQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 717 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 776
P + P SG ++ ++ Y P PP++ S T+ P +V +
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 777 VGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832
VG +G+GKS T+ ++V + G IL DG + L + ++ Q LF
Sbjct: 511 VGGSGSGKS----TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 833 GTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891
GTVR NL + DADL A + A + D I G DA+++E G N S GQRQ L +
Sbjct: 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 951
+RAL+R IL+LDEAT+A+D T+ +I +R + CT +I+AHRL+TI DCD I++L
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVL 684
Query: 952 DSGRVLEYDTPEELLSNEG 970
+ G+V++ T EEL + G
Sbjct: 685 ERGKVVQRGTHEELWAVGG 703
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 3e-49
Identities = 140/570 (24%), Positives = 262/570 (45%), Gaps = 47/570 (8%)
Query: 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG-------QVL 474
+++ +++ + + ++ S +L Q + T+ P ++S G Q +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 475 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA 534
++ + L + + + + + + PM FF T G I++RF ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 535 VFVNMFMGQVSQLLSTFVLIGIV---STMSLWAIMPLLLLFYAAYLY-----YQSTAREV 586
+++F+ + V++G+ M L+ + L + YA + + +
Sbjct: 272 TILSLFLD-----MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 587 KRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGAN 642
+ +++ S + E LNG+ TI++ + Y ++ G ++K+ +Y + G
Sbjct: 327 MQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 643 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 702
A+ I+ +++W A + + F + + L+ NI +L L+ A
Sbjct: 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 703 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 762
+A N LN V V SE I + +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLV------DSE---FINKKKRTELNNLNGDIVINDVSYSYGYG-SNILS 491
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822
+S TI + K IVG +G+GKS++ L + G IL++GF + LR+ +
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 823 IIPQSPVLFSGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880
+PQ P +FSG++ NL ++ S ++W A E A +KD I LG ++SE G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940
S GQ+Q ++L+RALL SK+L+LDE+T+ +D T+ I + + T++ +AHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAHRLS 670
Query: 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
D+I++LD G+++E + +ELL G
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 6e-49
Identities = 159/564 (28%), Positives = 271/564 (48%), Gaps = 68/564 (12%)
Query: 438 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS---YWLIISSLYAA--- 491
VS +SY+ D K + PL + + L+ V + L + Y + AA
Sbjct: 40 VSGPLLISYFIDNMVAKGNLPL---GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96
Query: 492 -KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 550
++L ++ + LR P+ F T P+G++I+R D V ++++ V+ +L +
Sbjct: 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND-------TEVIRDLYVTVVATVLRS 149
Query: 551 FVLIG--IVSTMSL-W-------AIMPLLLLFYAAYLYYQST--AREVKR-LDSITRSPV 597
LIG +V+ SL W I P +L+ Y Y ST R V+ L I
Sbjct: 150 AALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY-STPIVRRVRAYLADINDG-- 206
Query: 598 YAQFGEALNGLSTIRAYKAYDRMADINGKSM-DKNIRYTLVNMGANRW----------LA 646
F E +NG+S I+ ++ R G+ M + + + + M R L
Sbjct: 207 ---FNEVINGMSVIQQFRQQARF----GERMGEASRSHYMARMQTLRLDGFLLRPLLSLF 259
Query: 647 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 706
L + G LM++ + ++ G AF S +G L + +T+ S+ +
Sbjct: 260 SALILCGLLMLFGFSASGTIEVGVLY---AFISYLGRLNEPLIELTTQ-------QSMLQ 309
Query: 707 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 766
++ A ERV ++ P + +RP SG I ++V YR + VL ++
Sbjct: 310 QAVVAGERVFELMDGPRQQ--YGNDDRPL----QSGRIDIDNVSFAYRDD-NLVLQNINL 362
Query: 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826
++P V +VG TG+GKS++ + L L G I +DG ++ LR+ + ++ Q
Sbjct: 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422
Query: 827 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886
PV+ + T N+ + S+ +W+ALE L + R GL + E G N SVGQ+
Sbjct: 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482
Query: 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 946
QLL+L+R L++ +IL+LDEATA +D T+ IQ+ + + T+++IAHRL+TI++ D
Sbjct: 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
Query: 947 RILLLDSGRVLEYDTPEELLSNEG 970
IL+L G+ +E T ++LL+ +G
Sbjct: 543 TILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 5e-47
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 724 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 783
+A + + P + S++F V + Y P P L +SFT+PP ++V +VG +GAG
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 784 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---D 840
KS++LN L V+ G I ++G +A R + +PQ P LF+GT+ N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900
P + SDA++ EALERA L + + GLD + E G S GQ Q L+L+RA LR +
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 951
+L+LDE TA +D T+A + + +R + T+L++ HRL DRI++L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-47
Identities = 105/315 (33%), Positives = 169/315 (53%), Gaps = 38/315 (12%)
Query: 61 RAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFLLAEE-KILLPNPPLTSGLP 118
R FT++S VLR + P I ++ ++ ++++FL EE K L N LT+
Sbjct: 336 RIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN--LTT--T 391
Query: 119 AISIRNGYFSWDS-------KAER------------------------PTLLNINLDIPV 147
+ + N SWD K ++ P L NI+ +
Sbjct: 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEK 451
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 207
G L+A+ G TG GK+SL+ ++GEL P S+ G +++ PQ SWI T++DNI+FG
Sbjct: 452 GQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG 510
Query: 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
+++ RY I L+ D+ L P D T +GE G+ +SGGQ+ R+S+ARAVY ++D++
Sbjct: 511 LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLY 570
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327
+ D P + LD +++F+ C+ +S KTR+LVT++L L + D+I+L+HEG+ GT
Sbjct: 571 LLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGT 630
Query: 328 FEDLSNNGELFQKLM 342
F +L F L+
Sbjct: 631 FSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 7e-46
Identities = 89/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G I+F +V Y + P L ++F IP V +VGR+G+GKS++ N L R +++ G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHL 859
IL+DG D+ + L LR + ++ Q+ LF+ T+ N+ +S + EA A+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
Q + E K+ T L+IAHRL+TI D IL+++ G ++E T ELL+ G
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 75/218 (34%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 742 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
G +KF++V Y RP+ VL +SFT+ P + +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAH 858
G++L+DG I+++ L + ++ Q PVLF+ +++ N+ S + EA ++AH
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
I + G D +V E G S GQ+Q ++++RAL+R ++L+LDEAT+A+D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956
+Q+ + + + T+L+IAHRL+T+ D+IL+LD GR+
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 6e-42
Identities = 91/329 (27%), Positives = 151/329 (45%), Gaps = 21/329 (6%)
Query: 31 NSFILN---SIPVLVTVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNMITQV 86
+S +L + + + V G F LLG GDLT L L PL L +
Sbjct: 226 SSAVLEFFAYLSIALVAVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAA 284
Query: 87 VNANVSLKRMEEFLLAEEKILL-PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDI 145
+ ++ L + + P I I S+ +P L ++NL I
Sbjct: 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTI 344
Query: 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS------AVIRGTVAYVPQVS 193
G L A+VG +G GK++L++ +LG L P V+ R +++V Q
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 194 WIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252
++F T+R+NIL A+D L + G D T IGE G +SGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGLSGGQAQ 463
Query: 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 312
R+++ARA+ S + + + D+P + LDA + + + ++ KT +++T++L + D
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADAD 522
Query: 313 RIILVHEGMVKEEGTFEDLSNNGELFQKL 341
RI+++ G + E+GT E+LS L+ L
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 8e-42
Identities = 97/338 (28%), Positives = 167/338 (49%), Gaps = 20/338 (5%)
Query: 23 ILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM 82
L+LIL +L + V ++ FG +L G+LT + L P+ L +
Sbjct: 374 KLALILNTIKSLLQQL-SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQL 432
Query: 83 ITQVVNANVSLKRMEEFLLA--EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 140
T A V+L+R+ + L E++ L I N F + + P L +
Sbjct: 433 WTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-PDDPPVLED 491
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS-AVIRGTVAY 188
++L+IP G VAIVG +G GK++L+ +LG P ++D A +R V Y
Sbjct: 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 189 VPQVSWIFNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246
V Q ++F+ ++R+NI G+ + E A + ++ LP G T +GE G N+
Sbjct: 552 VLQDPFLFSGSIRENIALGNPEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGGANL 610
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306
SGGQ+QR+++ARA+ S + + D+ SALD + + L G+T +++ ++L
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLS 669
Query: 307 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344
+ DRII++ +G + E+G+ E+L G L+ +L +
Sbjct: 670 TIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-41
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 3/242 (1%)
Query: 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
G+++F + + + +SF V IVG TGAGK++++N L R+ + G
Sbjct: 332 KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390
Query: 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHL 859
+ILIDG DI LRK + + Q LF+ ++R N+ E +D +++EA + A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
D I + S G D V E G S G+RQ L+++RA+L+ + ILVLDEAT+A+DV T+A +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+ I K+ T IIAHRL+T+ + D +L LD GR++E + +E L + F K+++
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE-LIQKDGRFYKLLRR 569
Query: 980 TG 981
+G
Sbjct: 570 SG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 8e-41
Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 709 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 768
+ + R+ E E S S+ +V Y + PVL GLS I
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 828
+KV ++GRTG GKS++L L R + ++G IL++G IA + LR+ + ++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 829 VLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885
LFS T+R NL P SD L E L++ L + + + GL+A + E G S G+
Sbjct: 424 HLFSATLRDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 945
++ L ++RALL + +L+LDE T +D T+ I + + E ++ T+L+I HRL +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 946 DRILLLDSGRVLEYDTPEELLSNEGSSFS 974
DRI ++D+G+++E T +ELL+ +G +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-40
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
L+FT+P ++ +VG +GAGK+S+LN L + +G + I+G ++ + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSW 427
Query: 824 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880
+ Q+P L GT+R N+ +P + SD L +ALE A + + + GLD + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940
SVGQ Q L+L+RALL+ ++L+LDE TA++D ++ L+ + + + T L++ H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+ D+I ++ G++++ E LS G F+ +
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-40
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ ++ +Y + L G+SF + P + G++G GAGK+++L L +++ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD-------PFSEHSDADLWEALE 855
+ G+D+ K +R+ +G +PQ P L+ TVR NL+ E ++ + E LE
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
L+D + S G +Q LS++ ALL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANK-----------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 916 DALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972
I + +RE K T+L+ H L + CDR+++L+ G+++ TPEEL G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 973 FSKMVQSTGAANAQYLRSLVLGGEAENK 1000
++ A+ L L L E
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEEL 259
|
Length = 293 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 7e-40
Identities = 103/416 (24%), Positives = 180/416 (43%), Gaps = 33/416 (7%)
Query: 534 AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSIT 593
V + ++ L LI + + PL+ + ++ + + RL
Sbjct: 138 LVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-----SLRAARAAEQALARL---- 188
Query: 594 RSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI-- 651
R + AQ +AL+G + + A + + + + T A A+ +
Sbjct: 189 RGELAAQLTDALDGAAELVAS---GALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 652 -VGGLMIWLTATFAVVQNGSAENQEA---FASTMGLLLSYALNITSLLT-AVLRLASLAE 706
GL + A+ + A A + L L+ A + L A +L +
Sbjct: 246 LAAGLAVLGALWAGG--PAVADGRLAPVTLAVLVLLPLA-AFEAFAALPAAAQQLTRVRA 302
Query: 707 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 766
A ER+ ++ + +++ D+ Y P PPVL G+S
Sbjct: 303 ----AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSL 356
Query: 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826
+PP ++V I+G +G+GKS++L TL +++ +G + +DG ++ ++R+ + + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 827 SPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883
LF TVR NL P + +D +LW ALER L D +R GLD + E G S
Sbjct: 417 DAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 939
G+RQ L+L+RALL + IL+LDE T +D T + + + T+++I H L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-39
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
I +N FS+ + +P L +++L I G VAIVG +G GK++L+ +L P S
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 177 ---------DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 227
+R +AYVPQ ++F+ T+R+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
SGGQ+QR+++ARA+ + + I D+ SALD + +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 288 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320
+R GKT +++ ++L + DRII++ +G
Sbjct: 139 -LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 26/240 (10%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I N F++D RP L +++ IP G VAIVG +G GK S I +L VS S
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGS 57
Query: 180 AVI-------------RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYE--KAIDVT 222
+I R + VPQ + +FN T+ NI +G A + E KA +
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI- 116
Query: 223 SLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
HD + P G T +GERG+ +SGG+KQRV++ARA+ N + + D+ SALD H
Sbjct: 117 ---HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
R++ +R G+T +++ ++L + D+II++ +G + E GT E+L G L+ ++
Sbjct: 174 REIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-39
Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 35/310 (11%)
Query: 32 SFILN---SIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQV-- 86
S +L ++ V + V G F LL GDL A F +L P F LP + Q+
Sbjct: 231 SAVLELFATLSVALVAVYIG-FRLLAGDLDLATGL-----FVLLLAPEFYLP--LRQLGA 282
Query: 87 -----VNANVSLKRMEEFLLAEEKILLPNPPLTSG-LPAISIRNGYFSWDSKAERPTLLN 140
+ + + + L A + L P+T+ P++ ++ + RP L
Sbjct: 283 QYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGR--RPALRP 340
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188
++ +P G VA+VG +G GK++L++ +LG + P + AV R +A+
Sbjct: 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400
Query: 189 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247
VPQ ++F T+ +NI A +A++ L + LP G T IGE G +S
Sbjct: 401 VPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLS 460
Query: 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 307
GGQ QR+++ARA ++ + + D+P + LDA +V + +R G+T +LVT++L
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLAL 519
Query: 308 LSQVDRIILV 317
+ DRI+++
Sbjct: 520 AALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 6e-38
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I RN FS+ + E P L N++L I G VAI+G G GK++L+ + G P S
Sbjct: 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 177 ------DAS----AVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQ 225
D A +R + YVPQ +F T+RDNI G+ + R +A ++ +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
++ P G +IGERG +SGGQ+Q V++ARA+ ++ + + D+P SA+D + ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320
+R +R L KT +++T++ L VDRII++ G
Sbjct: 181 ER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 6e-38
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E+V RY PPVL +SF+I P + + I+G +G+GKS++ + ++ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
+DG DI+++ +L +G +PQ LFSG++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
S GQRQ L L+RAL +ILVLDE + +DV + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 924 RE-EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956
+ T ++IAHR T+ DRIL+L+ GRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 174
I N FS+D K +P L +IN I G VAIVG TG GKT+LI+ ++ P
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 175 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 227
+ D S +R + V Q +++F+ T+ +NI G A E+ I+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR--PNATDEEVIEAAKEAGA 118
Query: 228 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
D LP G T +GE G N+S G++Q +++ARA+ + + I D+ S +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 285 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ + G+T +++ ++L + D+I+++ +G + EEGT ++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 5e-36
Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 23/264 (8%)
Query: 75 PLFMLPNMITQVVNANVSLKRMEEFLLAE-----EKILLPNPPLTSGLPAISIRNGYFSW 129
PL L ++T+ A +L+ ++E + L P L G I RN F++
Sbjct: 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRL-QG--EIEFRNVSFAY 473
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----------- 178
E P L N++L I G VAI+G G GK++L+ +LG P +
Sbjct: 474 -PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 179 -SAVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDV 236
A +R + YVPQ +F T+RDNI G+ + + +A ++ + + P G
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296
+IGERG ++SGGQ+Q V++ARA+ + + + D+P SA+D + DR ++ L+GK
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGK 651
Query: 297 TRVLVTNQLHFLSQVDRIILVHEG 320
T VLVT++ L VDRII++ G
Sbjct: 652 TLVLVTHRTSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 8e-36
Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 19/306 (6%)
Query: 53 LGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP 112
G P A L +FA L + P + S +R+ + L + ++ P+
Sbjct: 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQ 329
Query: 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172
+ A+ +RN F++ + + L N NL + G VAI+G +G GK++L+ + G
Sbjct: 330 TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388
Query: 173 PPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 220
P + +R T++ + Q +F+ T+RDN+ + A E+
Sbjct: 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN--PDASDEELWA 446
Query: 221 V---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
L+ L+ P G T +GE G +SGG+++R+++ARA+ ++ +++ D+P LD
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD 506
Query: 278 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 337
RQV + GKT ++VT++L L ++DRII++ G + EEGT +L N
Sbjct: 507 PITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR 565
Query: 338 FQKLME 343
+++L +
Sbjct: 566 YKRLYQ 571
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-35
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 21/238 (8%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
+ +N F + P L +I+LDIP G VA+VG +G GK++L++ ++ V
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVDSGR 58
Query: 180 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
+I G + V Q ++FN TV +NI +G A E+ + +
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAAN 116
Query: 227 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
+ LP G T IGERGV +SGGQ+QR+++ARA+ + + I D+ SALD R
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 284 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
V + + +T ++ ++L + DRI+++ +G + E GT E+L G ++ KL
Sbjct: 177 V-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
++ E++ Y P+L LSF+IP + GI+G G+GKS++L L +++ + G +
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV-------RF-NLDPFSEHSDADLWEA 853
L+DG DIA +L K L +PQSP G TV R+ +L F S D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENF---SVGQRQLLSLSRALLRRSKILVLDEATAA 910
E L LGL A S G+RQ + ++RAL + + IL+LDE T+
Sbjct: 120 EEALEL--------LGL---EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 911 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLS 967
+D+ + + +R+ K T++++ H LN D ++LL G+++ TPEE+L+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 968 NE 969
E
Sbjct: 229 EE 230
|
Length = 258 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I +N F + S+ + P L ++L IP G VA+VG +G GK++++S + P S
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 180 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ-- 225
+ +R + V Q +F+ T+ +NI +G A E+ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 226 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
HD + LP G T +GERG +SGGQKQR+++ARA+ N + + D+ SALDA + V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 285 ---FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
DR ++ G+T +++ ++L + D I ++ G V E+GT ++L ++ KL
Sbjct: 179 QEALDRAMK----GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
Query: 342 MENA 345
++
Sbjct: 235 VKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-34
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 37/360 (10%)
Query: 615 KAYDRMADINGK--SMDKNIRYTL--VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 670
A +R +D NG ++ + +R L +G WL I+ EI G+MI
Sbjct: 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI------------- 279
Query: 671 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 730
A + +L AL L A + A S +R+ + A +
Sbjct: 280 -------AGS--ILSGRALAPIDLAIANWKQFVAARQSY---KRLNELLAELPAAAERMP 327
Query: 731 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 790
P G++ E + + P+L G+SF + + +GI+G +G+GKS++
Sbjct: 328 LPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 791 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD- 849
L I G + +DG D+ ++ L + +G +PQ LF GT+ N+ F E +D +
Sbjct: 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
+ EA A + + I R G D ++ E G S GQRQ ++L+RAL ++VLDE +
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 910 AVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968
+D + AL + + + T+++IAHR + + D+IL+L GR+ + EE+L+
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 90/298 (30%), Positives = 150/298 (50%), Gaps = 15/298 (5%)
Query: 680 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVER----VGNYIELPSEAPLVIESNRPP 735
T+G L S+ + + ++ +L LA + N VER + +EAP+V + + P
Sbjct: 252 TLGQLTSFVMYLGLMIWPMLALAWM----FNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795
P G + Y P L ++FT+ P +GI G TG+GKS++L+ + R
Sbjct: 308 P--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 852
++ G I + K L R L ++ Q+P LFS TV N+ P + + ++
Sbjct: 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEH 423
Query: 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
A + D I R G D +V E G S GQ+Q +S++RALL ++IL+LD+A +AVD
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 913 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
RT+ I +R+ + T++I AHRL+ + + IL++ G + + ++L G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-33
Identities = 67/217 (30%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS-AVIRGTVAY 188
+N +P G +A+VG +G GKTSL++A+LG LP + + R +++
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 189 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247
V Q + + T+RDN+L G + ++A++ + L LLP G T IG++ +S
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 307
GQ QR+++ARA+ + + D+P ++LDAH + V + + +T ++VT+QL
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLED 546
Query: 308 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344
L+Q D+I ++ +G + ++G + +LS G LF L+ +
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 9e-33
Identities = 81/317 (25%), Positives = 152/317 (47%), Gaps = 16/317 (5%)
Query: 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLL 101
V ++ G + ++ G LT + T +L + PL + N+ ++ A V+ R+ E L
Sbjct: 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453
Query: 102 AEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGK 161
+ + + I S+ L +I+L I + S IVG +G GK
Sbjct: 454 VDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGK 513
Query: 162 TSLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGS- 208
++L ++G S +R + Y+PQ +IF+ ++ +N+L G+
Sbjct: 514 STLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK 573
Query: 209 -AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
A ++ ++ D++ +P G TE+ E G +ISGGQKQR+++ARA+ ++S V
Sbjct: 574 ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327
I D+ S LD +++ + + L KT + V ++L Q D+II++ G + E+G+
Sbjct: 634 ILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691
Query: 328 FEDLSNNGELFQKLMEN 344
++L + + L+ N
Sbjct: 692 HDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-32
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 615 KAYDRMADINGKS-MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 673
A DR ++ S + + +LV +G +LAI EI G+MI GS
Sbjct: 219 AASDRAGMLSNLSKYFRIVLQSLV-LGLGAYLAIDGEITPGMMI----------AGS--- 264
Query: 674 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 733
+L+ AL + S + A +R+ + +
Sbjct: 265 ---------ILVGRALAPIDGAIGGWKQFS---GARQAYKRLNELLANYPSRDPAMPLPE 312
Query: 734 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793
P G + E+V + P L G+SF++ + + I+G +G+GKS++ +
Sbjct: 313 P------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
Query: 794 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWE 852
I G + +DG D+ ++ K +G +PQ LF GTV N+ F E++D + + E
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE 426
Query: 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
A + A + + I R G D + G S GQRQ ++L+RAL K++VLDE + +D
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 913 VRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
+ AL + + T+++I HR + + D+IL+L GR+ + +E+L+
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-31
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ +V Y + VL LS + +K+ ++GR+G+GKS++L L ++ ++G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
+DG ++ L ++ ++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
G FS G+RQ L+L+R LL+ + I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 924 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
E K T++ I H L I D+IL L++G+++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804
+ +++ Y P L +S TI + V IVG G+GKS++L L ++ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 805 DGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVR----FNLDPFSEHSDADLWEALERAH 858
DG D+ K L +LR+ +G++ Q+P F TV F L+ + ++ E +E A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEA- 118
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDA 917
L+ +GL+ + S GQ+Q ++++ L IL+LDE TA +D
Sbjct: 119 LEL------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 918 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGR 955
L++ K ++ E K T++I+ H L+ +++ DR+++L+ G+
Sbjct: 173 LLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)
Query: 120 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD- 177
I+ + F + K + P +L NI+L I G +V IVG +G GK++L + P +
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 178 -----------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 225
A +R V V Q + +FN ++RDNI A E+ I+ L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAG 116
Query: 226 -HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
HD LP G T +GE+G +SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 284 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
+ R + +G+T +++ ++L + DRII++ +G + E+G+ ++L L+ L
Sbjct: 177 IM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ ++ RY L +S T+ + G++G GAGK++++ + +++ + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
+ G DI K ++++ +G +P+ P L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
S G +Q L+L++ALL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 923 IREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 956
+RE K T+L+ +H L CDR+ +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
++ +++ + + L +SF+I + +G+VG +G+GKS++ + +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 802 ILIDGFDIAKFG---LMDLRKILGIIPQ------SPVLFSGTVRFNL-DPFSEHSDADLW 851
I+ DG D+ K RK + ++ Q +P + T+ + +P H
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 852 EALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
EA + A L + +GL +V E S GQRQ ++++RAL K+L+ DE T+
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 910 AVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEY 959
A+DV A I K ++EE T+L I H L + DR+ ++ +G+++E
Sbjct: 175 ALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E++ + Y PVL +S ++ + ++G GAGKS++L + +++ G I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDAD 849
I G + K R +G +PQ + F TV+ ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
+ EALER ++D D Q+ E S GQ+Q + L+RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 910 AVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
VDV I ++E + T+L++ H L ++ DR++ L+ ++ PEE+L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Query: 968 NE 969
E
Sbjct: 228 EE 229
|
Length = 254 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 5e-30
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 744 IKFEDVVLRY---RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
I+ E+V + L +S IP + GI+G +GAGKS++L + + G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 801 RILIDGFDIA---KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 856
+ +DG D+ + L LR+ +G+I Q L S TV N+ LE
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA-----------FPLEL 110
Query: 857 AHL-KDAI--RRNSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
A + K I R L GL + S GQ+Q ++++RAL KIL+ DEAT+
Sbjct: 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 910 AVDVR-TDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
A+D T ++++ K I E T+++I H + + CDR+ +LD GR++E T E+
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Query: 966 LSN 968
+N
Sbjct: 230 FAN 232
|
Length = 339 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-30
Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 37/326 (11%)
Query: 39 PVLVTVVSFGMFTLLGGDLTPARA-FTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRME 97
P+ + S + +L L A+A + F + L + + N N ++R
Sbjct: 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRG- 300
Query: 98 EFLLAEEKI--LLPNPP-LTSGLPA-------ISIRNGYFSWDSKAERPTLLNINLDIPV 147
L A E + LL +PP +G A + RN F + +RP L +I+L I
Sbjct: 301 --LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPG-RDRPALDSISLVIEP 357
Query: 148 GSLVAIVGGTGEGKTSLISAM-----------LGELPPVSDAS-AVIRGTVAYVPQVSWI 195
G VA+VG +G GK++L++ + L + ++D + A +R VA V Q +
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417
Query: 196 FNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253
FN T+ +NI +G + A E+A+ Q +D LP G T IGE GV +SGGQ+QR
Sbjct: 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR 477
Query: 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQ 310
+++ARA+ ++ + I D+ SALD R V +R ++ G+T +++ ++L + +
Sbjct: 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRLSTIEK 533
Query: 311 VDRIILVHEGMVKEEGTFEDL-SNNG 335
DRI+++ +G + E GT +L + NG
Sbjct: 534 ADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 81/265 (30%), Positives = 137/265 (51%), Gaps = 21/265 (7%)
Query: 95 RMEEFLLAEEKILLPNPPLTSGLPA---ISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 151
R+ E L AE I P P T +P I F++ ++ ++P L +NL + G V
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETV 369
Query: 152 AIVGGTGEGKTSLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNAT 199
A+VG +G GK++L +L P S A +R +A VPQ +F A+
Sbjct: 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAAS 429
Query: 200 VRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGDVTEIGERGVNISGGQKQRVSM 256
V +NI +G A E+ H + LP G T +GERGV +SGGQ+QR+++
Sbjct: 430 VMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487
Query: 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 316
ARA+ ++ + + D+ SALDA Q+ + + + G+T +++ ++L + + DRI++
Sbjct: 488 ARAILKDAPILLLDEATSALDAE-SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV 546
Query: 317 VHEGMVKEEGTFEDLSNNGELFQKL 341
+ +G + +GT +L G L+ +L
Sbjct: 547 MDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 31/268 (11%)
Query: 85 QVVNANVSLKRMEEFL----LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 140
Q A + KR+ E L + + LP P + ++I ++PTL
Sbjct: 283 QFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP------PGGKKPTLRG 336
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG--------TVAY 188
I+ + G +AI+G +G GK++L ++G PP S + A ++ + Y
Sbjct: 337 ISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396
Query: 189 VPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQ--HDLDL-LPGGDVTEIGERGV 244
+PQ +F TV +NI FG +P EK I+ L H+L L LP G T IG G
Sbjct: 397 LPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPDGYDTVIGPGGA 453
Query: 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTN 303
+SGGQ+QR+++ARA+Y + + + D+P S LD G Q I + G T V++T+
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALKARGITVVVITH 512
Query: 304 QLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ L VD+I+++ +G + G +++
Sbjct: 513 RPSLLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-29
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 721 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPS 771
+P I + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLRKILGIIPQSPV 829
+ +G+VG +G+GKS++ L ++ G I+ DG D+ L LR+ + ++ Q P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 830 LF---SGTVRFNL-DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDAQVSEAGENFSVG 884
TV L +P H E R A L + + LD E S G
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGG 433
Query: 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLN 940
QRQ ++++RAL K+L+LDE +A+DV A L++ ++EE T L I+H L
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELG-LTYLFISHDLA 491
Query: 941 TIID-CDRILLLDSGRVLEYDTPEELLSN 968
+ DR+ ++ GR++E E++ N
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 1e-29
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806
E++ + Y VL LS +I + VGI+G GAGKS++L TL +++ G IL+DG
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 807 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER---AHLKDAI 863
D+A +L + + +PQ ALE AHL D
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD-- 92
Query: 864 RR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
R N L S G+RQ + L+RAL + IL+LDE T+ +D+ + +
Sbjct: 93 RPFNEL-------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 923 IREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVL 957
+R + ++ H LN DR++LL GR++
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 58/213 (27%)
Query: 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804
+ E++ RY L +S T+ + V +VG G+GKS++L + +++ G ILI
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 805 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864
DG DIAK L
Sbjct: 59 DGKDIAK-----------------------------------------------LPLEEL 71
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
R +G Q S GQRQ ++L+RALL +L+LDE T+ +D + + + +R
Sbjct: 72 RRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 925 EEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR 955
E + T++I+ H DR+++L G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 799
I+ D+ + Y + L +S IP + ++G +G GKS++L L R+ +L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 800 -GRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDA 848
G +L+DG DI +++LR+ +G++ Q P F G++ N+ E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
+ EAL +A L D ++ L S GQ+Q L L+RAL ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 909 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 965
+A+D + A I++ I E K T++I+ H + DR L +GR++E+ E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E++ RY L +S I ++V ++G G+GKS++L L +++ G +L
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 804 IDGFDI-AKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD------PFSEHS-DADLWEA 853
+DG D ++ L++LR+ +G++ Q+P LF TV + + + EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
LE L++ + R L S GQ+Q ++++ L +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 914 RTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ + + +++ E T++I+ H L +++ DR+++LD G++L P E+ ++
Sbjct: 172 KGRRELLELLKKLKEEGGK-TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 744 IKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
I ED + E L ++ +P + V IVG G+GKSS+L+ L + ELE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEK- 57
Query: 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 860
G + + + + Q P + +GT+R N+ + + ++ L+
Sbjct: 58 ----------LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 919
+ G ++ E G N S GQ+Q +SL+RA+ + I +LD+ +AVD +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 920 QKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 955
+ I + T +++ H+L + D+I++LD+GR
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 28/275 (10%)
Query: 52 LLGGDLTPAR----AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 107
+ G L P L+ F LP Q+ + +R+ E L A +
Sbjct: 263 VADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDAAGPVA 318
Query: 108 LPNPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 163
+ P + G P + +R+ + P L ++LD+P G VAI+G +G GK++
Sbjct: 319 EGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKST 376
Query: 164 LISAMLGELPP------VSDASA------VIRGTVAYVPQVSWIFNATVRDNILFGSA-F 210
L++ + G L P + +R V+ Q + +F+ TVR+N+
Sbjct: 377 LLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA 436
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
A++ L L LP G T +GE G +SGG++QR+++ARA+ +++ + + D
Sbjct: 437 TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 496
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305
+P LDA ++ + LSG+T VL+T+ L
Sbjct: 497 EPTEHLDAETADELL-EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-28
Identities = 97/347 (27%), Positives = 158/347 (45%), Gaps = 39/347 (11%)
Query: 28 LQCNSFILNSIPVLVTVVSFGMFTLLG------GDLTPAR--AFTSLSLFAVLRF--PLF 77
L + IL +P L+T ++ + ++G G LT AF SL + F P+
Sbjct: 372 LGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSL----MSSFLEPVN 427
Query: 78 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA--------ISIRNGYFSW 129
L + L R+++ L LL + + +RN F +
Sbjct: 428 NLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY 487
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAML----GEL-----PPVSD 177
S E P + N +L + G VA+VGG+G GK++ L++ + GE+ P
Sbjct: 488 -SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI 546
Query: 178 ASAVIRGTVAYVPQVSWIFNATVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 236
V+ +VA V Q ++F TVRDN+ L+ A +A ++ + PGG
Sbjct: 547 PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296
E+ E G N+SGGQ+QR+ +ARA+ N + I D+ SALD + + D R G
Sbjct: 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGC 663
Query: 297 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343
T ++V ++L + D II++ G V + GT E+L G + +L+
Sbjct: 664 TCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804
+ ED+ + Y PVL +SF + P + + IVG GAGKS++L + +++ G I +
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 805 DGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDADL 850
G + K RK +G +PQ + F +VR S+ A +
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910
EALER L + R Q+ E S GQ+Q + L+RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 911 VDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLD 952
VD +T I + +RE + T+L++ H L +++ DR+LLL+
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-28
Identities = 92/323 (28%), Positives = 155/323 (47%), Gaps = 44/323 (13%)
Query: 47 FGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 104
FG ++GG L+P + AF L+ P+ L + ++L+R+ + L +
Sbjct: 382 FGAHLVIGGALSPGQLVAFNMLAGRVTQ--PVLRLAQLWQDFQQTGIALERLGDILNS-- 437
Query: 105 KILLPNPPLTSGLPAISIRNGYFSWDS-----KAERPTLL-NINLDIPVGSLVAIVGGTG 158
P P ++GL A+ G ++++ + P +L N+NLDI G + IVG +G
Sbjct: 438 ----PTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSG 493
Query: 159 EGKTSLISAM-----------------LGELPPVSDASAVIRGTVAYVPQVSWIFNATVR 201
GK++L + L P +R + V Q + +F+ ++R
Sbjct: 494 SGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW-----LRRQMGVVLQENVLFSRSIR 548
Query: 202 DNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMAR 258
DNI + P +E I L D LP G TE+GE+G N+SGGQ+QR+++AR
Sbjct: 549 DNIALCNPGAP--FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606
Query: 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 318
A+ N + IFD+ SALD + R +R G+T +++ ++L + DRII++
Sbjct: 607 ALVGNPRILIFDEATSALDYE-SEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665
Query: 319 EGMVKEEGTFEDLSNNGELFQKL 341
+G + E G E+L L+ +L
Sbjct: 666 KGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 744 IKFEDV--VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 799
I+ ++V V L +S ++P + GI+GR+GAGKS TL R + LER
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS----TLIRCINGLERP 57
Query: 800 --GRILIDGFDIAKFGLMDLRKI---LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE-A 853
G +L+DG D+ +LRK +G+I Q FNL S + +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ---------HFNL--LSSRTVFENVALP 106
Query: 854 LERAHLKDAIRR-------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
LE A + A +GL+ + S GQ+Q + ++RAL K+L+ DE
Sbjct: 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 907 ATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961
AT+A+D T AL++ I E T+++I H + + CDR+ +++ G V+E T
Sbjct: 167 ATSALDPETTQSILALLRD-INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
Query: 962 PEELLSN 968
EE+ +N
Sbjct: 225 VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ + + VL G+ + + + I+G +G+GKS++L + ++ + G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 804 IDGFDIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 858
IDG DI+ L LR+ +G++ QS LF TV N+ P EH+ E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDA 917
K ++GL S G ++ ++L+RAL ++L+ DE TA +D + +
Sbjct: 119 EK----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 918 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+ +++++E T +++ H L+T DRI +L G+++ TPEEL
Sbjct: 175 IDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-26
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 85 QVVNANVSLKRMEEFL----LAEEKILLPNPP-------LTSGLPAISIRNGYFSWDSKA 133
Q V A S KR+ E L A E++ LP P LT+ P
Sbjct: 301 QFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG-------------Q 347
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG----- 184
++P L I+ + G + I+G +G GK++L ++G PP S + A +R
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407
Query: 185 ---TVAYVPQVSWIFNATVRDNIL-FGSAFEPAR-YE--KAIDVTSLQHDLDL-LPGGDV 236
+ Y+PQ +F+ T+ +NI FG +P + E + V H+L L LP G
Sbjct: 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV----HELILRLPQGYD 463
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSG 295
T IGE G +SGGQ+QR+++ARA+Y + + + D+P S LD+ G I + G
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARG 522
Query: 296 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
T V++ ++ L+ VD+I+++ +G + G E+
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-26
Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 22/252 (8%)
Query: 109 PNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 162
PN PLT L I ++ FS+ ++ + P L + + G +VA+VG +G GK+
Sbjct: 462 PNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521
Query: 163 SLISAML-------GEL----PPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAF 210
++ + + G++ P+ + VA V Q +F+ +VR+NI +G
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 211 EPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269
P A + HD + P G TE+GE+G +SGGQKQR+++ARA+ V I
Sbjct: 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641
Query: 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE 329
D+ SALDA + + + + +T +L+ ++L + + D+I+++ +G V E GT +
Sbjct: 642 DEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 330 DLSNNGELFQKL 341
L + ++ L
Sbjct: 699 QLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-26
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 744 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----L 797
++ E++ + + P + +SF + P + +GIVG +G+GKS++ L ++ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 798 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPV-LFSG--TVRFNLD-PFSEHSDAD 849
G +++DG D+ ++RK+ G +I Q P+ + T+ + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
EA +RA + + + L + S G RQ + ++ AL + K+L+ DE T
Sbjct: 126 RAEARKRA--VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 910 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966
A+DV T A I +++ +L I H L + + DR++++ G ++E EE+L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 967 SNEGSSFSKM 976
SN +++
Sbjct: 244 SNPQHPYTRG 253
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
I +R S+ R L ++LD+ G ++AI+G +G GK++L+ ++G L P S
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 177 -----DASAV-------IRGTVAYVPQVSWIFNA-TVRDNILFG----SAFEPARYEK-- 217
D S + +R + + Q +F++ TV +N+ F + +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 218 --AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
++ L+ DL P +SGG K+RV++ARA+ + ++ ++D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 276 LDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
LD + V D IR + G T ++VT+ L + DRI ++++G + EGT E+L
Sbjct: 167 LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176
L I N F + + L +++L+I G V ++G G GK++L+ + G L P S
Sbjct: 1 LRMIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 177 -------------DASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEP-------AR 214
+ +R V V Q +F TV D + FG R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
+A+++ L+ LD P N+SGGQKQRV++A + ++ + D+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 275 ALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 332
LD R++ + + E GKT ++VT+ L + + DR++++ +G + +G ++
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 333 NNGELFQK 340
N+ EL
Sbjct: 228 NDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---- 176
++N FS+ RP L +I+L I G V IVG G GK++L+ + G L P S
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 177 --------DASAVIRGTVAYVPQ--VSWIFNATVRDNILFG------SAFE-PARYEKAI 219
+ +R V V Q F TV + + FG E R E+A+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
++ L+ D P +SGGQKQRV++A + + D+ + D+P + LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 280 VGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEG 320
R++ + ++ +L GKT ++VT+ L L ++ DR+I++ +G
Sbjct: 169 GRRELLEL-LK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-26
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 744 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
I + + R+R V + G+SFT+ P + G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 860
+DGFD+ K R++ G + S L+ T R NL+ F A L+ L+ L
Sbjct: 62 ATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRLTARENLEYF-----AGLY-GLKGDELT 114
Query: 861 DAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
+ + LG++ + FS G RQ ++++RAL+ +L+LDE T +DV
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 919 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL 957
+++ IR+ +L H + + CDR+++L GRV+
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 43/248 (17%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 176
P I + N S+ + RP L +I+L + G + A++G G GK++L+ A+LG L P S
Sbjct: 3 PMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 177 --------DASAVIRGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPAR 214
R + YVPQ V F TV+D +L G + + +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
++A++ ++ D +IGE +SGGQKQRV +ARA+ N D+ + D+P +
Sbjct: 120 VDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 275 ALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331
+D G++ ++ EL GKT ++VT+ L + DR+I ++ ++ G E++
Sbjct: 169 GVDVA-GQKEIYDLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEV 225
Query: 332 SNNGELFQ 339
L +
Sbjct: 226 LTEENLEK 233
|
Length = 254 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 176
I +N + P L NI+ I G V IVG TG GK+SL+ A+ + S
Sbjct: 1 GDIEFKNVSLRY-RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 177 -------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225
D S + +R ++ +PQ +F+ T+R N+ + +A++ L+
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLK 119
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
++ LPGG T + E G N+S GQ+Q + +ARA+ S + + D+ +++D +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327
+ IR T + + ++L + DRI+++ +G V E +
Sbjct: 180 -KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 112 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-- 169
P G ++IR F++ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 170 -----GELP----PVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 218
G++ P++ R +A V Q ++F+ TV +NI G E
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV 424
Query: 219 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+ S+ D+ LP G TE+GERGV +SGGQKQR+S+ARA+ N+++ I DD LSA+D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333
Q+ +R G+T ++ ++L L++ I+++ G + + G + L+
Sbjct: 485 RTEHQIL-HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 755 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814
P L+GLS I D V ++G GAGKS++LN + ++ G+ILIDG D+ K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 815 MDLRKILGIIPQSPVLFSG---TVRFNLDPFSEHSDADLWE-------------ALERAH 858
+L + Q P+ + T+ NL L E R+
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENL---------ALAESRGKKRGLSSALNERRRSS 126
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DA 917
++ + R LGL+ ++S+ S GQRQ LSL A L KIL+LDE TAA+D +T +
Sbjct: 127 FRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 918 LIQKT--IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGR-VLEYDTPE 963
+++ T I EE K T L++ H + +D +R+++L SG+ VL+ E
Sbjct: 187 VMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+L G+S T+P + V ++GR GAGK+++L T+ ++ G I DG DI +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG---LPPH 70
Query: 819 KI--LGI--IPQSPVLFSG-TVRFNLD-----PFSEHSDADLWEALER-AHLKDAIRRNS 867
+ GI +P+ +F TV NL A L E LK+ RR
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE--RRKQ 128
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA-----VDVRTDALIQKT 922
L S G++Q+L+++RAL+ R K+L+LDE + V+ +A+ +
Sbjct: 129 L---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI--RE 177
Query: 923 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+R+E T+L++ ++ DR +L+ GRV+ T ELL++
Sbjct: 178 LRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-25
Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 31/311 (9%)
Query: 55 GDLTPARAFTSLSLFAVL-RFPLFMLP-----NMITQVVNANVSLKRMEEFLLAEEKILL 108
G A +L +FA L F M P + QV+ S +R+ E + ++
Sbjct: 271 GGNAQPGALIALFVFAALAAFEALM-PVAGAFQHLGQVIA---SARRINEITEQKPEVTF 326
Query: 109 P-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS- 166
P + ++++ N F++ +P L ++L I G VA++G TG GK++L+
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 167 ------AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215
GE+ P++D S A +R ++ V Q +F+AT+RDN+L A A
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL--AAPNASD 443
Query: 216 EKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272
E I+V L+ L+ G + +GE G +SGG+++R+ +ARA+ ++ + + D+P
Sbjct: 444 EALIEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502
Query: 273 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 332
LDA RQ+ + KT +++T++L L Q DRI ++ G + E+GT ++L
Sbjct: 503 TEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
Query: 333 NNGELFQKLME 343
+ +L +
Sbjct: 562 AQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 56/216 (25%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
+ + N F + AE P L N++ I G +AI+G +G GK++L +LG L P S
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 177 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 227
D + + + V Y+PQ +F+ ++ +NIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
SGGQ+QR+ +ARA+Y N + + D+P S LD G + ++
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQ 137
Query: 288 CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 322
I + +G TR+++ ++ L+ DRI+++ +G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 7e-25
Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 30/327 (9%)
Query: 41 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100
++ ++ G ++ G+L+ + +L L + ITQ+ A L E+F
Sbjct: 254 MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKL---EDFF 310
Query: 101 LAEEKILLPNPPLTSG-LP----AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVG 155
E+ + P + LP A+ R+ F + + ++ + +++ + G VAIVG
Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ--GVFDVSFEAKAGQTVAIVG 368
Query: 156 GTGEGKTSLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFNATVRDN 203
TG GKT+LI+ + P D + V +R ++A V Q + +FN ++R+N
Sbjct: 369 PTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428
Query: 204 ILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261
I G A + YE A + L G D T +GERG +SGG++QR+++ARA+
Sbjct: 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNRLSGGERQRLAIARAIL 487
Query: 262 SNSDVFIFDDPLSALDAHVGRQVFDR--CIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319
N+ + + D+ SALD +V + +R +T ++ ++L + D ++ + +
Sbjct: 488 KNAPILVLDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQ 544
Query: 320 GMVKEEGTFEDLSNNGELFQKLMENAG 346
G + E+G+F++L F KL+ +G
Sbjct: 545 GRLIEKGSFQELIQKDGRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 743 SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
+ ++ + Y L+ +S I + +GIVG +G+GKS++ L + + G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 801 RILIDGFDIA-KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 859
IL+DG +A K + + ++ Q P +L+P L E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-------SLNPRRTVGRI-LSEPLRPHGL 114
Query: 860 KDAIRR-----NSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
+ +R + +GL + + S GQRQ ++++RAL+ K+L+LDE T+A+DV
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 914 RTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
A I +++E T L I+H L + CDRI ++D+G+++E EELLS+
Sbjct: 175 SVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 6/249 (2%)
Query: 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSF-GQVLVTLA 478
+LI +L L + L + D L I + Q L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 538
+ Y KRL A+L IL PM FF TN +G + +R D+ I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 539 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 598
+F ++ ++ F+++ ++ +L L R++ R + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 599 AQFGEALNGLSTIRAYKAYDRMAD-INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 657
+ E+L+G+ T++A+ + + + D +++ L
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK-AITAGLSFGITQLISYLSY 239
Query: 658 WLTATFAVV 666
L F
Sbjct: 240 ALALWFGAY 248
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 46/218 (21%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ ++V RY + VL+ +S I + V ++G +G+GKS++L + + E + G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 804 IDGFDIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 860
IDG D+ L LR+ +G++ Q LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+LGL S GQ+Q ++L+RAL +L+LDE T+A+D T ++
Sbjct: 98 ------ALGL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 921 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGR 955
++ T++++ H L+ DR+++L G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLR 818
++ +S + P + VG++G GAGK+++ N + + G ++ G DI GL
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRI 76
Query: 819 KILGIIP--QSPVLFSG-TVRFNL---DPFSEHSDADLWEALERAHLKDAIRR-----NS 867
LGI Q LF G TV N+ L R ++A R
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTIR 924
+GL N S GQ++ L ++RAL + K+L+LDE A ++ T+ L + + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 925 EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ T+L+I H + ++ DRI++L+ G V+ TPEE+ +N
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
+ + N F + +P L +++ IP G + I+G G GK++L+ + G L P S
Sbjct: 1 MMLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 178 ------------ASAVIRGTVAYVPQVSWI-FNATVRDNILFG--------SAFEPARYE 216
+ + +AYVPQ F TV + +L G E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
+ L+LL + + +R V+ +SGG++QRV +ARA+ + + + D+P S
Sbjct: 118 IVEEA------LELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 276 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 330
LD +V + G T V+V LH L+ D +IL+ +G + +GT E+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L +SF++ P + G++G GAGK+++ N + + G +L DG DI
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 820 ILGIIP--QSPVLFSG-TVRFNL----------DPFSEHSDADLWEALERAHLKDAIRRN 866
LGI Q P LF TV N+ + + EA ERA + + R
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE--ELLER- 130
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 923
+GL S GQ++ L ++RAL K+L+LDE A ++ T+ L + + +
Sbjct: 131 -VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 924 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
RE + T+L++ H ++ ++ DR+ +LD GRV+ TP+E+ +N
Sbjct: 190 RE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E++ Y P L ++ I P + V I+G +GAGKS++L + R+VE G IL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 804 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 844
++G DI K LRK+ +I + VL + T R L FSE
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904
ALER +GL + + + S GQ+Q ++++RAL ++ +++
Sbjct: 121 EDKERALSALER-----------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 905 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961
DE A++D +T + ++ + T++I H+++ DRI+ L +G ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 962 PEEL 965
P EL
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-24
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
++ ++V + VL ++ I + V ++G +G GKS++L + + E G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNL--------DPFSEHSDADLWEA 853
LIDG D+ R I ++ Q+ L+ TV N+ P +E D + E
Sbjct: 61 LIDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
+ L+ + R L L S GQRQ ++L+RAL+R+ K+ +LDE + +D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 914 RTDALIQKTIREEFK------SCTMLIIAHRL--NTIIDCDRILLLDSGRVLEYDTPEEL 965
+ ++ +R E K T + + H + DRI++++ GR+ + TP EL
Sbjct: 167 K----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGTPLEL 221
Query: 966 LSNEGSSF 973
+ F
Sbjct: 222 YERPANLF 229
|
Length = 338 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 182
+N F++ ++ + L +++ + G + A+VG +G GK++++ A+L ++
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLL 73
Query: 183 RG-------------TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-L 228
G V+ V Q +F +++DNI +G K + H +
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
L G TE+GE+G +SGGQKQRV++ARA+ N V I D+ SALDA Q +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQA 192
Query: 289 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 322
+ +T +++ ++L + + D+I+++ G +
Sbjct: 193 LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DASAVIRGTVAY 188
++ ++ G + ++G G GKT+L+ + G L P S A +R + Y
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82
Query: 189 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
VPQ ++ TVR+N+ F R E+ +++ L+ +
Sbjct: 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT------ 136
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTR 298
+SGG KQR+S+A A+ + ++ I D+P S LD R+ +R EL+ G
Sbjct: 137 -----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLR-ELAKEGGVT 189
Query: 299 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 354
+L++ H L + DR+I++++G + EGT E+L + ++E E
Sbjct: 190 ILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL-AEL 246
Query: 355 KEDGETVDNKTSKPA 369
E + V +
Sbjct: 247 LEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 21/238 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ V + +L G+ +P + + I+G +G+GKS++L + ++ ++G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 804 IDGFDIAKF---GLMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 858
IDG DI + L ++RK +G++ Q LFS TV N+ P EH+ E
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 859 LKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
+K +GL A + + S G R+ ++L+RA+ ++L LDE T+ +D
Sbjct: 127 MK----LELVGLRG---AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 915 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ +I + IRE + T++++ H L++++ DR+ +L G+V+ TPEELL+++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I RN F++ K E P L NIN IP G VA+VG +G GK S I+ +L + +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGK-STIANLLTRFYDIDEGE 399
Query: 180 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
A +R VA V Q +FN T+ +NI + + +R + + + +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ-IEEAARMAY 458
Query: 227 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 284 VFDRCIRGELS----GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+R I+ L +T +++ ++L + + D I++V +G + E GT +L
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
IK E+V Y L +SF I + V I+G G+GKS++ L +++ + G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALE-----R 856
IDG I+K L ++RK +GII Q+P F G TV + D+ LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATV-----------EDDIAFGLENKKVPP 116
Query: 857 AHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
+KD I + +G++ + + +N S GQ+Q ++++ L +I++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 915 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969
I+K + + + + T++ I H ++ I D++++ G+++ P+E+L+N+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 817
L G+S + + V ++GR GAGK+++L T+ +V GRI+ DG DI +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 818 RKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLWEALER-AHLKDAIRRNSLG 869
R + +P+ +F TV NL E + DL E E LK+ RRN
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE--RRNQR- 133
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTDALIQKTIREEF 927
AG S G++Q+L+++RAL+ R K+L+LDE + A + + I + I+E
Sbjct: 134 -------AG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE--IFEAIKELR 183
Query: 928 KSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
K M L++ ++ DR +L++GR++ T ELL++
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E++ Y P L +S +I P + V ++G +GAGKS++L L +VE G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 804 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 844
IDG DI K LR++ +I + VL T R F +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904
ALER +GL + + + S GQ+Q ++++RAL+++ K+++
Sbjct: 120 EEKQRALAALER-----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 905 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961
DE A++D + + ++ + T+++ H+++ + DRI+ L GR++
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 962 PEEL 965
P EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ ++ Y+ P + LS + + G++G GAGK++ L L + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHL 859
I+G+ I R+ LG PQ LF TVR +L ++ +++ E +E
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
LGL + ++ S G ++ LSL+ AL+ +L+LDE T+ +D + I
Sbjct: 120 V-------LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172
Query: 920 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 965
I E K ++++ H ++ CDRI ++ G++ +P+EL
Sbjct: 173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 744 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
I+ +++ Y L G+S +I + V IVG +G+GKS++LN L + G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 802 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD-------PFSEHSDAD 849
+ +DG DI+K +L +G + QS L T N++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
E LER L D + SE S GQ+Q ++++RAL KI++ DE T
Sbjct: 121 AEELLERVGLGDRLNHY-------PSE----LSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 910 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956
+D T + + +RE + T++++ H DRI+ L G++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-23
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 112 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171
PL SG I I N F++ + L NINL +P VA+VG TG GK++L S ++G
Sbjct: 335 PLQSG--RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 172 LP-----------PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 219
P P+S S +V+R VA V Q + T N+ G + +A+
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
+ L LP G T +GE+G N+S GQKQ +++AR + + I D+ + +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 280 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
Q + + T V++ ++L + + D I+++H G E+GT + L
Sbjct: 511 T-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561
|
Length = 592 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 9e-23
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG 813
+ G+SF + + +GIVG +G+GKS + + ++ + G IL DG D+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 814 LMDLRKILG----IIPQS------PVLFSGTVRFNL-DPFSEHSDADLW--------EAL 854
+LRKI G +I Q PV+ T+ + + H E L
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
E + D RR L + E S G RQ + ++ AL K+L+ DE T A+DV
Sbjct: 136 ELVGIPDPERR----LKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 915 TDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
A I K ++ E +++I H L + + DR+ ++ +GR++E EE+ N
Sbjct: 188 VQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 9e-23
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
V++ +S + + VG++G GAGK++ + +V + G+IL+D DI K M R
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKR 76
Query: 819 KILGI--IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 875
LGI +PQ +F TV N+ E + DL +A + L + +
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRD 134
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--L 933
+ S G+R+ + ++RAL K ++LDE A VD IQ+ I+ K + L
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK-HLKDRGIGVL 193
Query: 934 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE-------GSSFS 974
I H + +D CDR ++ G+VL +PEE+++NE G +F
Sbjct: 194 ITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGENFK 242
|
Length = 243 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 94/336 (27%), Positives = 150/336 (44%), Gaps = 50/336 (14%)
Query: 38 IPVLVTVVSFG--MFTLLGGDLTPAR------AFTSLSLFAVLRFPLFMLPNMITQVVNA 89
+PVL + F + L G L+ AF S S AV + L N + ++
Sbjct: 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSG-AVTQ-----LSNTLISILAV 421
Query: 90 NVSLKRMEEFLLAEEKILL--PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPV 147
+R + L A ++ +P SG AI + F + L +++L I
Sbjct: 422 IPLWERAKPILEALPEVDEAKTDPGKLSG--AIEVDRVTFRYRPDG-PLILDDVSLQIEP 478
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSW 194
G VAIVG +G GK++L+ +LG P S D AV R + V Q
Sbjct: 479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV-RRQLGVVLQNGR 537
Query: 195 IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254
+ + ++ +NI G+ +A + L D+ +P G T I E G +SGGQ+QR+
Sbjct: 538 LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 255 SMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 310
+ARA+ + +FD+ SALD A V + +R L TR+++ H LS
Sbjct: 598 LIARALVRKPRILLFDEATSALDNRTQAIVS-ESLER-----LKV-TRIVIA---HRLST 647
Query: 311 V---DRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343
+ DRI ++ G V ++GT+++L LF +L
Sbjct: 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 83/329 (25%), Positives = 142/329 (43%), Gaps = 37/329 (11%)
Query: 617 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--TATF-AVVQNGSAEN 673
+D + + + IR T +G WL++ L I+ + TF ++Q A
Sbjct: 275 FDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQITFGGLMQAVGAFG 333
Query: 674 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 733
Q S++ + I +LRLA +L A + + + + +
Sbjct: 334 Q--VHSSLSWFIDNYDAIADWRATLLRLAEFR-QALEAAQM--DTEKPARTGRRIDFDDN 388
Query: 734 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793
G I E++ LR P+ +L L+F + P +++ I G +GAGK+S+L L
Sbjct: 389 ADHG------ITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
Query: 794 IVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 849
+ GRI + + +PQ P L GT+R L + + SDA+
Sbjct: 442 LWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYPNAAPDFSDAE 489
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
L L + L D R LD + S G++Q L+ +R LL + K + LDEAT+
Sbjct: 490 LVAVLHKVGLGDLAER----LD-EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544
Query: 910 AVDVRTDALIQKTIREEFKSCTMLIIAHR 938
A+D T+ + + ++EE T++ + HR
Sbjct: 545 ALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
I+ +++ Y P L ++ I + V I+G +GAGKS++L +L +V+ G I
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 803 LIDGFDIAKFGLMDLRKIL---GIIPQSP-----------VLFS-----GTVR--FNLDP 841
L +G I K +LRK+ G+I Q VL T R F L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-- 119
Query: 842 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901
FS+ A +ALER +G+ + + S GQ+Q ++++RAL+++ KI
Sbjct: 120 FSKEDKAQALDALER-----------VGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVLE 958
++ DE A++D + + +++ + + +I H+++ DRI+ L +GR++
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228
Query: 959 YDTPEEL 965
EL
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 41/210 (19%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----AVIRGT 185
L +++L + G +A++G +G GKT+L+ + G P + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 186 VAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+ V Q +F + TV +NI FG A AR + +++ L+ L+ P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--- 294
+SGGQ+QRV++ARA+ + + D+PLSALDA + + +R EL
Sbjct: 131 --------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE-----LREELKELQ 177
Query: 295 ---GKTRVLVT-NQLHFLSQVDRIILVHEG 320
G T + VT +Q L+ DRI +++EG
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-22
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ D+ Y + +SF + G++G GAGK+++L + ++ + G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 804 IDGFDIAKFGLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 862
IDG D + +R+ +G++ + + T R NL F+ + L R +K
Sbjct: 61 IDGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113
Query: 863 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
I L L + FS G +Q ++++RAL+ ILVLDE T+ +D+RT +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT----R 169
Query: 921 KTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
+ + K ++ +H + + CDR+++L G V+ + E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNL 229
Query: 975 KMVQST 980
+ + +
Sbjct: 230 EEIFAF 235
|
Length = 245 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 23/248 (9%)
Query: 111 PPLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 169
PPL A++ N F++D RP L I+ IP+G VAIVG +G GK S I +L
Sbjct: 253 PPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGK-STILRLL 309
Query: 170 GELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216
V+ S I R + VPQ + +FN T+ NI +G A E
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR--PDATAE 367
Query: 217 KAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273
+ D LP G T +GERG+ +SGG+KQRV++AR + N + I D+
Sbjct: 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEAT 427
Query: 274 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333
SALD H + + +R +G+T +++ ++L + D II++ G + E GT E+L
Sbjct: 428 SALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486
Query: 334 NGELFQKL 341
G L+ ++
Sbjct: 487 AGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 4e-22
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 120 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 174
+ +RN ++ T L +I+L + G VA+VG +G GK++L+ + G P
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 175 VSDASAVIRGT---VAYVPQVS----WIFNATVRDNILFGSAFEP-------ARYEKAID 220
V + G YV Q W TV DN+ G + R E+ ++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 221 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 280
+ L + P +SGG +QRV++ARA+ + DV + D+P SALDA
Sbjct: 118 LVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 281 GRQVFDRCIRGEL------SGKTRVLVTNQLH---FLSQVDRIIL 316
Q ++ EL +GKT +LVT+ + FL+ DR+++
Sbjct: 167 REQ-----LQEELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 5e-22
Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ + + Y L LS T+ P + + ++G +G GK+++L + + + G IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAH 858
IDG D+ G+ R+ +G++ Q LF + F L + +A RA
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLK------LRGVPKAEIRAR 110
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
+++ + +GL+ ++ S GQ+Q ++L+RAL R +L+LDE +A+D +
Sbjct: 111 VRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 919 IQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960
+++ ++E + T + + H + DRI +++ GR+++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 33/276 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+FE+V RY + ++ TI + + ++G +G+GK++ L + R++E G IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN------LDPFSEHSDADLWEALER 856
IDG DI+ ++LR+ +G + Q LF TV N L + + A E
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADEL 117
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
L +GLD SE + + S GQ+Q + ++RAL IL++DE A+D
Sbjct: 118 LDL--------VGLDP--SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 913 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
T +Q K +++E T++ + H ++ + DRI ++D+G +++YDTP+E+L+N
Sbjct: 168 PITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 969 EGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREE 1004
+ F V+ + + LR L L A+ R E
Sbjct: 227 PANDF---VEDFFGESERGLRLLSLVSVADAVRRGE 259
|
Length = 309 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
A+ + FS+D+ R + +++ + G VAIVG TG GK++LI+ + P S
Sbjct: 334 AVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 177 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
D V +R +A V Q + +FN ++ DNI G A E+
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--PDATDEEMRAAAERAQ 449
Query: 227 DLDLL---PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
D + P G T +GERG +SGG++QR+++ARA+ + + I D+ SALD +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 284 VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
V + G+T ++ ++L + DRI++ G V E G+F++L G F L
Sbjct: 510 VKAALDELM---KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-22
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 29/245 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+FE+V RY ++ L+ I + + ++G +G+GK++ + + R++E G I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN--LDPFSEHSDADLWEALERAHLK 860
IDG DI + ++LR+ +G + Q LF TV N L P W K
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK-----WP-------K 107
Query: 861 DAIRRNSLGLDAQVSEAGENF--------SVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
+ IR + L A V F S GQ+Q + ++RAL +L++DE A+D
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 913 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
T +Q K +++E T++ + H ++ DRI ++ +G +++ TP+E+L +
Sbjct: 168 PITRDQLQEEFKRLQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 969 EGSSF 973
+ F
Sbjct: 227 PANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 9e-22
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 50/247 (20%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 174
+ ++N S+ S L ++NLDI G V ++G +G GK++L+ + G P
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 175 -------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--SAFEP-----ARYEKAI 219
V+D RG +A V Q ++ + TV +NI FG P R ++
Sbjct: 60 ILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
+ L+H L+ P +SGGQ+QRV++ARA+ VF+ D+PLS LDA
Sbjct: 119 KLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 280 VGRQVFDRCIRGELS------GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333
+ R + +R E+ G T + VT H QV+ + L +V +G + +
Sbjct: 168 L-RVL----MRSEIKKLHERLGTTTIYVT---H--DQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 334 NGELFQK 340
EL+++
Sbjct: 218 PLELYER 224
|
Length = 338 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-22
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 65/301 (21%)
Query: 742 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
G I+ DV RY RP +P + L+F+ IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 800 GRILI--------------------------------------DGFDIAKF--------- 812
++ G D F
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 813 -------GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD-ADLWEALERAHLKDAIR 864
L DLR + I+ Q P+LF+ ++ N+ E + D+ A + A + + I
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
D V G++ S GQ+Q ++++RALLR KIL+LDEAT+++D ++ LI+KTI
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 925 E--EFKSCTMLIIAHRLNTIIDCDRILLLDS-----GRVLEYDTPEELLSNEGSSFSKMV 977
+ + T++ IAHR+ +I D+I++ ++ V + T EELLS + + K V
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 978 Q 978
+
Sbjct: 1463 K 1463
|
Length = 1466 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 812
L ++ IP + ++G +G GKS++L +L R+ +L G++L DG DI K
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 855
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV- 134
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
KD + ++LGL S GQ+Q L ++RAL ++L+LDE T+A+D
Sbjct: 135 ----KDRLHDSALGL-----------SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 916 DALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
I++ I+E K T++I+ H + DR G ++EY E++ +N
Sbjct: 180 TGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP-- 190
L ++NLDI G V ++G +G GKT+ + M+ L + I G V +P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 191 --QVSWIF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGG 234
++ +F + TV DNI FG P R + ++ ++H LD P
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK- 129
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + Q +R EL
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-----MRAELK 174
Query: 295 ------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 326
G T + VT +Q+ ++ DRI ++++G +++ G
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
P I +R S+ +R L ++LD+P G ++AI+GG+G GK++L+ +LG L P D
Sbjct: 7 PLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--D 61
Query: 178 ASAV-----------------IRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAI 219
+ IR + + Q +F++ TV +N+ F P R +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHTKL 116
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVN-------ISGGQKQRVSMARAVYSNSDVFIFDDP 272
SL +L L+ + +G RG +SGG ++RV++ARA+ + ++ D+P
Sbjct: 117 P-ESLIRELVLM---KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 273 LSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTF 328
S LD + V D IR EL+ G T ++VT+ L L+ DR+ ++ +G V EGT
Sbjct: 173 TSGLDP-ISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 329 EDLSNN 334
E+L +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-21
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 51/218 (23%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 174
+SI N FS+ + E+ L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 175 ------VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 228
VSD + ++ + Q ++F+ T+R+N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
G SGG++QR+++AR + ++ + + D+P LD RQ+
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 289 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326
I L KT + +T+ L + +D+I+ + G + +G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 3e-21
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 812
L ++ IP + ++G +G GKS++L L R+ +L G +L+DG +I K
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFN--------------LDPFSEHS--DADLWEALER 856
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV-- 139
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
KD + +++LGL S GQ+Q L ++RAL + ++L++DE T+A+D +
Sbjct: 140 ---KDRLHKSALGL-----------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
I++ I E K T++I+ H + D G ++E+ +++ +N
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 4e-21
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 27/202 (13%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------SAVIRGTVA 187
P L +++ ++ G +AIVG G GK++L+ A+LG L P S + R +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 188 YVPQ---VSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
YVPQ + F +VRD +L G R D + L+ + ++E+ +R
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---GLSELADR 128
Query: 243 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRV 299
+ +SGGQ+QRV +ARA+ + D+ + D+P + +D ++ +R EL G T +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK-TQEDIYELLR-ELRREGMTIL 186
Query: 300 LVTNQLHFLSQV----DRIILV 317
+VT H L V DR++L+
Sbjct: 187 VVT---HDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-21
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ +++ + + VL G+S ++ + V I+G +G+GKS++L L + E + G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 804 IDGFDI-AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-------EAL 854
+DG D+ K ++ LR+ +G++ Q LF TV N+ + A + EA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSKAEAR 114
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-- 912
E+A + + + +GL + S GQ+Q ++++RAL K+++ DE T+A+D
Sbjct: 115 EKA--LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 913 -VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 970
V + K + EE TM+I+ H + + DR++ +D G+++E PEE N
Sbjct: 171 LVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228
Query: 971 S 971
S
Sbjct: 229 S 229
|
Length = 240 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 4e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+F++V Y +L +S IVG +GAGKS+++ + R+++ G IL
Sbjct: 4 IEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLK 860
IDG DI ++DLR+ +G++ Q P LF GTV+ N++ + D+ L
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 861 DAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
+GL+ + + +N S G+ Q +S++R L ++L+LDE T+A+D + +I
Sbjct: 117 ------IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 920 QKTIRE--EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
++ I + + T++ I H + D L+ G ++EY + +N + +K+
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIVELERG 800
I+ E + RY L +SF++ + V IVG G+GKS+ +LN L E G
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAG 62
Query: 801 RILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEAL 854
I + G +++ + D+R+ +G++ Q+P F G V F L E+ E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMV 118
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
ER A+R+ +G++ ++ S GQ+Q ++++ L + I++LDEAT+ +D R
Sbjct: 119 ERVD--QALRQ--VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 915 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
+ +T+R+ E K T+L I H L+ DR+++++ G +LE TPEE+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 9e-21
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI--RGTVA 187
L ++NL++P GSLVA++G +G GK++L+ + G P S DA+ V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 188 YVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+V Q +F + TVRDNI FG A AR E+ +++ L+ D P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGKT 297
+SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + E+ T
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VT 183
Query: 298 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
V VT +Q + DRI+++ G +++ G+ +++ ++
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 34/242 (14%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER--- 799
++ E++ RY V++G+S ++ + VG++G GAGK+ T F IV L +
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKT----TTFYMIVGLVKPDS 54
Query: 800 GRILIDGFDIAKFGLMDLRKILGII--PQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 856
G+IL+DG DI K M R LGI PQ +F TV N+ LE
Sbjct: 55 GKILLDGQDITKLP-MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEI 102
Query: 857 AHLKDAIRRNSL-------GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
L R L + + S G+R+ + ++RAL K L+LDE A
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
Query: 910 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
VD IQK I+ + + +LI H + + DR ++ G+VL TPEE+ +
Sbjct: 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
Query: 968 NE 969
NE
Sbjct: 223 NE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-20
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------------DA 178
++ L +++L+I G +VA++G +G GK++L+ + G P S D
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 179 SAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+R + V Q +F + TV +NI G
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------ 100
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSG 295
+SGGQ+QRV++ARA+ + DV + D+P SALD + R+ ++ G
Sbjct: 101 --------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-ITRREVRALLKSLQAQLG 151
Query: 296 KTRVLVTNQLHFLSQV-DRIILVHEG 320
T VLVT+ L +++ DR++++ +G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 4e-20
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 180
I N F + R L N++L + G +VA+VG G GK++L+ A+ G L P S
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EI 56
Query: 181 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+I G ++ + +R I + V L
Sbjct: 57 LIDGK-----DIAKLPLEELRRRIGY--------------VPQL---------------- 81
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 300
SGGQ+QRV++ARA+ N D+ + D+P S LD ++ + G+T ++
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 301 VTNQLHFLSQV-DRIILVHEG 320
VT+ DR+I++ +G
Sbjct: 136 VTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806
E++ Y+ + +L LS + + + + G+ GAGK+++ L +++ G IL++G
Sbjct: 3 ENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 807 FDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA---LERAHLKD 861
I + RK +G + Q LF+ +VR L + DA +A L+ L
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
R+ L L S GQ+Q L+++ ALL +L+ DE T+ +D + + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 922 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 956
IRE +++I H + CDR+LLL +G +
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 6e-20
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+FE+V Y P L +SF IP + V + G +GAGKS++L ++ RG+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 804 IDGFDIAKFGLMD---LRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDA---DLWE 852
++G D+++ + LR+ +G++ Q L V L + + E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
L+ LK R L +Q+S G++Q ++++RA++ + +L+ DE T +D
Sbjct: 121 VLDLVGLKHKARA----LPSQLSG-------GEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 913 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEYDTPEE 964
I + EE T+L+ H L + R+L L+ GR++ ++
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 9e-20
Identities = 118/563 (20%), Positives = 230/563 (40%), Gaps = 85/563 (15%)
Query: 464 IYSLLSFG--QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 521
I+SL+ G Q +++ +S+ + + + K L L S+ F NP ++ +
Sbjct: 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSD 159
Query: 522 FAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580
L ++ + F+ +F S L ++ + I + L Y +
Sbjct: 160 LDFYLEQVNAGIGTKFITIFT-YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICN 218
Query: 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 640
+ K+ + + + EAL G+ T+ +Y + S +Y L
Sbjct: 219 KKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL---K 275
Query: 641 ANRWLAIRLEIVGGLMI-------WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNI 691
AN ++ + ++ G ++ W + + N N S + +LL +
Sbjct: 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGV---L 332
Query: 692 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 751
S+ + L ++ E + ++E + E+ + PLV E+N I+F++V
Sbjct: 333 ISMFMLTIILPNITE-YMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRF 390
Query: 752 RY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFD 808
Y R ++ + L+FT+ VG +G GKS++L + R+ + G I+I D +
Sbjct: 391 HYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 809 IAKFGLMDLRKILGIIPQSPVLFSGTVRFN----------LDPFSEHSDADLWEALERAH 858
+ L R +G++ Q P+LFS +++ N L+ S + + D ++ E +
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 859 LKDAIRRNSLG------------------------------------------------L 870
+++ R G
Sbjct: 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFK 928
+ V S GQ+Q +S++RA++R KIL+LDEAT+++D +++ L+QKTI + +
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 929 SCTMLIIAHRLNTIIDCDRILLL 951
+ +IIAHRL+TI + I +L
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 9e-20
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 32/243 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+K E++ Y + L G++ I + I+G GAGKS++ L I++ GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 804 IDG--FDIAKFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWE 852
DG D ++ GLM LR+ +G++ Q P LFS +V NL + +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 853 ALER---AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
AL+R HLKD + S GQ++ ++++ L+ K+LVLDE TA
Sbjct: 125 ALKRTGIEHLKD--------------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 910 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELL 966
+D + I K + E K T++I H ++ + + CD + ++ GRV+ P+E+
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
Query: 967 SNE 969
+ +
Sbjct: 231 AEK 233
|
Length = 283 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 9e-20
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 173
PA+ IRN S+ + +I+LDI G V ++G +G GKT+L+ + G E P
Sbjct: 4 PALEIRNVSKSFGDF---TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 174 -------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--------SAFEPARYEK 217
++D R + V Q +F + TV +N+ FG A AR E+
Sbjct: 61 EILLDGEDITDVPPEKRP-IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE 119
Query: 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
A+++ L+ D P +SGGQ+QRV++ARA+ V + D+PLSALD
Sbjct: 120 ALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 278 AHVGRQVFDRCIRGEL------SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFED 330
A + Q+ R EL G T V VT +Q L+ DRI ++++G +++ GT E+
Sbjct: 169 AKLREQM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
Query: 331 L 331
+
Sbjct: 224 I 224
|
Length = 352 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 1e-19
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 60/218 (27%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 174
I +RN + K L +I+L + G + ++G G GKT+LI +LG L P
Sbjct: 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 175 ------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD 227
+ ++ + Y+P+ ++ N TVR+N+
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL--------------------- 96
Query: 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
SGG KQR+++A+A+ + ++ I D+P S LD R+ F
Sbjct: 97 -------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWE 136
Query: 288 CIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMV 322
+R EL GKT +L ++ L ++ DR+ +++ G +
Sbjct: 137 LLR-ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT--- 185
D+ + L +++L +P G + I+G +G GK++LI + G E P + S ++ GT
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70
Query: 186 -------------VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKA---------IDVT 222
+ + Q + ++ TV +N+ E A KA +++
Sbjct: 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELV 128
Query: 223 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 282
L+ D P +SGGQKQRV +ARA+ +N V + D+ SALD +
Sbjct: 129 GLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 283 QVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ R I EL G T VL+T+++ + ++ DR+ ++ +G V EEGT E++ N
Sbjct: 178 SILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 1e-19
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 817
L G+S T+ P + ++G GAGKS+++ L + + G ILIDG +A D L
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 818 RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDA 872
+ + Q L +V N+ +P D +A+ R ++ + R LGLD
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-RKAMRRR-ARELLAR--LGLDI 137
Query: 873 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFKS-- 929
+ S+ QRQ++ ++RAL +++L+LDE TAA+ V+ T+ L IR K+
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RLKAQG 195
Query: 930 CTMLIIAHRLNTIID-CDRILLLDSGR-VLEYDTPEEL 965
++ I+HRL+ + + DRI +L GR V T E
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
|
Length = 500 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 1e-19
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810
+ Y +L+ +S ++ + + I G +G GKS++L + ++ G +L +G D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLG 869
R+ + Q+P LF TV NL P+ + +RA D + R +L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALP 123
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV----RTDALIQKTIRE 925
D+ +++ S G++Q ++L R L KIL+LDE T+A+D + +I + +RE
Sbjct: 124 -DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 926 E 926
+
Sbjct: 183 Q 183
|
Length = 223 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-19
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 45/250 (18%)
Query: 744 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 799
I+ +++ + + L+ +S IP + G++G +GAGKS TL R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS----TLIRCINLLERP 57
Query: 800 --GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD---L 850
GR+L+DG D+ +L R+I G+I Q FNL S + D L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQI-GMIFQ---------HFNL--LSSRTVFDNVAL 105
Query: 851 WEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903
LE A K I+ L GL + S GQ+Q ++++RAL K+L+
Sbjct: 106 --PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
Query: 904 LDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 958
DEAT+A+D T I K I E T+++I H ++ + I CDR+ ++D+GR++E
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRI-CDRVAVIDAGRLVE 221
Query: 959 YDTPEELLSN 968
T E+ S+
Sbjct: 222 QGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 798
P + V + G+SF+I + +G+VG +G GKS++ + + E
Sbjct: 15 PVGKGFGKKRYV--------KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 799 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 858
G IL +G DI K E + E LE+
Sbjct: 67 SGEILFEGKDITKLS-----------------------------KEERRERVLELLEKVG 97
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA- 917
L + L E S GQRQ + ++RAL K++V DE +A+DV A
Sbjct: 98 LPEEF------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 918 ---LIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 968
L++ ++EE T L I+H L+ + I DRI ++ G+++E EE+ SN
Sbjct: 148 ILNLLKD-LQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+L G+S + P + + I+G GAGKS++L L + + G + ++G + + +L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 820 ILGIIPQSPVL-FSGT----VRFNLDPFSEHSDAD-----LWEALERAHLKDAIRRNSLG 869
++PQ+ L F T V+ P + + +AL L R+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQKTI 923
L S G++Q + L+R L + + L LDE T+A+D+ +
Sbjct: 136 L-----------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 924 REEFKS-CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 969
R+ + +L + H LN DRI+LL GRV+ +P+++L++E
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 2e-19
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA 180
+ L ++L++ G +VA++G G GKT+L+ ++G + P S
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 181 VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
R +AYVP+ IF TV +N+L G+ + + D+ + +L P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP-----RL 126
Query: 240 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 293
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ + +R E
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE- 185
Query: 294 SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342
G T +LV F L DR ++ G + GT +L + ++ + +
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRG 184
L +++LDIP G LVA++G +G GKT+L+ + G E P +D R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 185 TVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
V +V Q +F + TV DN+ FG + P E V L L L+ +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLDW 128
Query: 239 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSG 295
+ +R +SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + EL
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-H 187
Query: 296 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
T V VT +Q L DR++++++G +++ GT +++ ++
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGT 185
L +INL + G VAI+G +G GK++L+ + G P S
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 186 VAYVPQ----VSWIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGG 234
+ YV Q + W TV DN+ G A R ++ +++ L D P
Sbjct: 74 IGYVFQEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDRCIR 290
+SGG +QRV++ARA+ + + + D+P ALDA + ++ +
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR--LW 177
Query: 291 GELSGKTRVLVTNQLH---FLSQVDRIIL 316
E KT +LVT+ + +L+ DR+++
Sbjct: 178 EET-RKTVLLVTHDVDEAVYLA--DRVVV 203
|
Length = 248 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ +++ + VL G+ T+ + V I+G +G+GKS++L + + E + G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 804 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA------------- 848
IDG + K + +LR+ +G++ Q FNL P H
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQ---------FNLFP---HLTVLENITLAPIKVKG 106
Query: 849 -DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
EA ERA + + + +GL + S GQ+Q ++++RAL K+++ DE
Sbjct: 107 MSKAEAEERAL--ELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 908 TAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 956
T+A+D + +++ + TM+++ H + + DR++ +D GR+
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E+V Y P+ P L ++ I + +GI+G+ G+GKS++ L ++ ++G++L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 804 IDGFDIAKFG-LMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 860
+ G D F L +RK++GI+ Q+P F G TV +L E+ E +R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 919
A +GL+ + + S GQ Q ++L+ L + L+ DE T+ +D + A++
Sbjct: 121 LA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968
++ + K T++ I H L + D DRI+++D G+++ PE +LS+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-19
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 40/209 (19%)
Query: 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------DASAVIRGTVA 187
L +++LD+ G ++A+ G G GKT+L + G + S + R ++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 188 YVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTSL--------QHDLDLLPGGDVT 237
YV Q +F +VR+ +L G A E+A V +H L L
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL------- 127
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--G 295
SGGQKQR+++A A+ S D+ IFD+P S LD +V + + EL+ G
Sbjct: 128 ---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAAQG 176
Query: 296 KTRVLVTNQLHFLSQV-DRIILVHEGMVK 323
K +++T+ FL++V DR++L+ G +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG---------------ELPPVS 176
+ L ++NL+I G VAIVG +G GK++L++ +LG +L +S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLS 73
Query: 177 DA--SAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDL-D 229
+ + + R + +V Q + + + TV +N+ R ++A + L D
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
L +E+ SGGQ+QRV++ARA+ +N + + D+P LD+ ++V + +
Sbjct: 134 RLLKKKPSEL-------SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--L 184
Query: 290 RGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325
EL+ GKT ++VT+ DR+I + +G ++EE
Sbjct: 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 817
L ++ I + V IVG +G+GKS++LN L + + G +LI+G D+ K +L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 818 ---RKILGIIPQS-PVLFSGTVRFNLD-PF------SEHSDADLWEALERAHLKDAIRRN 866
RK +G + Q+ +L TV N++ P + E LE L+D + +
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926
SE S GQ+Q ++++RAL+ KI++ DE T +D +T + + +RE
Sbjct: 139 K------PSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 927 FKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
K T++++ H DR++ L G++ E
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 120 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I ++N ++ E+ L ++L I G VAIVG +G GK++L++ + G P S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 177 -------------DASAVIRG-TVAYVPQVSWIFN----ATVRDNILFGSAFEP------ 212
A R + +V Q FN T +N+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS---FNLLPDLTALENVELPLLLAGVPKKER 117
Query: 213 -ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
R E+ ++ L L+ P +SGGQ+QRV++ARA+ ++ + + D+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADE 166
Query: 272 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEG 320
P LD+ G++V + +R + +G T V+VT+ DRII + +G
Sbjct: 167 PTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 12/213 (5%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
L +SFT+ P V ++G GAGKS++ + L R+ + G+I + G D+ + L
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 819 KILGIIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--LGLDAQVS 875
++ G++ Q P L +VR NL A L L RA + I LGL +
Sbjct: 75 RL-GVVFQQPTLDLDLSVRQNL-----RYHAAL-HGLSRAEARARIAELLARLGLAERAD 127
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 933
+ + G R+ + ++RALL R +L+LDE T +D + A I +R + ++L
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVL 187
Query: 934 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 966
H ++ I DR+++L GRVL EL
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 5e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 820
I + I+G +G+GKS+ + L R++E G+I IDG +I K ++L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 821 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 879
+G++ Q LF T+ N E E E+A + ++ +GL+ +
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA--LELLKL--VGLEEYEHRYPD 128
Query: 880 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TML 933
S G +Q + L+RAL IL++DEA +A+ D LI+ ++++E K T++
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSAL----DPLIRDSMQDELKKLQATLQKTIV 184
Query: 934 IIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSF 973
I H L+ I DRI+++ +G +++ TP+E+L N + +
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 6e-19
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVI 182
L ++L +P G +VA++G G GKT+L+ ++G LPP S
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 183 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
R + YVP+ IF TV +N+L G A A+ + ++ +L P +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFP-----RLK 123
Query: 241 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS 294
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ R +R E
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-- 181
Query: 295 GKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 334
G T +LV F L DR ++ G V EGT +L +
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 7e-19
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 44/225 (19%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 185
L I+L + G +V I+G +G GK++L+ + G L S + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 186 --VAYVPQVSWIFNA----TVRDNILF------GSAFEPARYEKAIDVTS---LQHDLDL 230
V V Q FN TV +N+ + AR EKA+++ L D
Sbjct: 77 RKVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALELLEKVGLADKADA 132
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
P +SGGQ+QRV++ARA+ + V +FD+P SALD + +V D
Sbjct: 133 YPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 291 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
G T ++VT+++ F +V DR+I + +G + EEG E+ +N
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 7e-19
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811
+ L +SF I ++VGI+G GAGKS++L + I + G++ + G +A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA- 91
Query: 812 FGLMDLRKILGIIPQSPVLFSG--TVRFN---LDPFSEHSDADLWEALERAHLKDAIRRN 866
L++L G P+ +G + L + D + E +E A L D I
Sbjct: 92 -PLIELG--AGFDPE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--- 141
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-- 924
D V + +S G L+ S A IL+LDE A D A +K +
Sbjct: 142 ----DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERL 190
Query: 925 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964
E K+ T+++++H L I CDR + L+ G++ +PEE
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 8e-19
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 816
+L +S P + I+G +GAGKS++LN L R G +LI+G + K
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79
Query: 817 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 875
RKI+G +PQ +L TVR L F+ A L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-FA-------------AKLR--------GL----- 112
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLI 934
S G+R+ +S++ L+ +L LDE T+ +D + + +R + T++
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 935 IAHRLNTII--DCDRILLLDSGRVL 957
H+ ++ I D++LLL GRV+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-- 178
+ N + R L +++L I G +V I+G G GK++L+ + G L P S
Sbjct: 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 179 ----------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 228
+ +AYVPQ L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQA-----------------------------------L 82
Query: 229 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
+LL + + +R N +SGG++QRV +ARA+ + + D+P S LD ++ +
Sbjct: 83 ELL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 288 CIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 326
R GKT V+V LH L+ DR+IL+ +G + +G
Sbjct: 140 LRRLARERGKTVVMV---LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-18
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 785 SSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILGIIPQSPVLF-SGTVRFNLDP- 841
S++L + +++ G IL+DG D LRK +G++ Q P LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 842 -FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900
+ +DA EALER L D + R +G S GQ+Q ++++RALL++ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 901 ILVLDEATA 909
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+ G++F + + G +G GAGK++ + L ++ G + G+D+ + +R
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVR 65
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 877
+ +GI+PQ + T R NL+ EA ERA ++ + LG A
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA--EELLELFELGEAAD--RP 121
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIA 936
+S G R+ L ++ +L+ + +L LDE T +D RT I IR + T+L+
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 937 HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973
H + CDRI ++D GR++ TPEEL G
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L +S + D I+G TG+GKS +L T+ ++ + G+IL++G DI L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 820 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
+ +PQ+ LF TV N+ + D E + I LG+D ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVL---EIAE-MLGIDHLLNRKP 127
Query: 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQ--KTIREEFKSCTMLII 935
E S G++Q ++++RAL+ KIL+LDE +A+DVRT + L + K IR+EF T+L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHV 186
Query: 936 AHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
H D++ ++ +G++++ PEE+ + F
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 30/257 (11%)
Query: 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIV 795
++F+ V Y P L+ +SF+IP ++G G+GKS+ ++N L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSP------VLFSGTVRFNLDPFSEHSDAD 849
+ +I +DG + + D+R+ +GI+ Q+P V F L+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------- 112
Query: 850 LWEALERAHLKDAIRR--NSLG-LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
A+ R + +R +G LD SE N S GQ+Q ++++ L KI++LDE
Sbjct: 113 --RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 907 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 964
+T+ +D I K IR+ + + T++ I H ++ D++L+LD G++L +P E
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229
Query: 965 LLSNEGSSFSKMVQSTG 981
+ S +M++ G
Sbjct: 230 IFSKV-----EMLKEIG 241
|
Length = 282 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 3e-18
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 744 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
++ +V Y L +S ++ + V +VG +G GKS++L + + G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWE---- 852
+L+DG + G + Q L V L+ A+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEE 114
Query: 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
LE L Q+S G G RQ ++L+RAL +L+LDE +A+D
Sbjct: 115 LLELVGLSGFENA----YPHQLS--G-----GMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 913 VRTDALIQ----KTIREEFKSCTMLIIAHRLNTIID-----CDRILLLDS--GRVLE 958
T +Q RE K T+L++ H ID DR+++L + GR++
Sbjct: 164 ALTREQLQEELLDIWRETGK--TVLLVTHD----IDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ +DV Y LP + T+P + V I+G +GAGKS++LN + G IL
Sbjct: 2 LALDDVRFSYG-HLP--MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
I+G D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 918
+ +GL + S GQRQ ++L+R L+R IL+LDE +A+D +R + AL
Sbjct: 114 AAQ--VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971
+ + E + T+L++ H DR++ LD+GR+ + +ELLS + S
Sbjct: 172 VSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 813
L ++ I + ++G +G GKS+ L TL R+ +L G +L+DG DI +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
+ LRK +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD---- 134
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD +++++LGL S GQ+Q L ++RAL ++L++DE T+A+D +
Sbjct: 135 -EVKDRLKKSALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I++ I+E K T++I+ H + D+ +G ++E+ +L +N
Sbjct: 183 LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 4e-18
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+L +S T+ P + V I+G GAGKS++L L + + G + ++G +A + +L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 819 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDAD---LWEALER---AHLKDAIRRNS 867
+ ++PQ L F TV P D + AL + AHL R+
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG---RDY 132
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQK 921
L S G++Q + L+R L + + L+LDE T+A+D+ + +
Sbjct: 133 PQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 922 TIREEFKS--CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 969
R+ ++++ H LN DRI+LL GR++ TP E+L+ E
Sbjct: 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E++ RY + L G+S T+ P G++G GAGK++++ L + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF-------SEHSDADLWEALE 855
IDG D+ K LR+ +G +PQ ++ TVR LD S+ A + E LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
+L D ++ S G R+ + +++AL+ IL++DE TA +D
Sbjct: 117 LVNLGDR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 916 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957
+ + E + +++ H + + C+++ +L+ G+++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L +SF +P +++G++GR GAGKS++L L I + G + + G + GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 820 ILGIIPQSPVLFSGT--VRFNLDPFSEHSDADLWEALER----AHLKDAIRRNSLGLDAQ 873
G P+ +G + N S ++ E ++ + L D I D
Sbjct: 93 -GGFNPE----LTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGDFI-------DLP 139
Query: 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 933
V +S G + L+ + A IL++DE A D Q+ +RE K +
Sbjct: 140 VK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 934 IIA-HRLNTIID-CDRILLLDSGRVLEYD 960
I+ H ++I CDR L+L+ G++
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 6e-18
Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 10/218 (4%)
Query: 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI---- 820
S I + I+G +G+GKS+M+ L R++E RG++LIDG DIAK +LR++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880
+ ++ QS L + F A + R DA+R+ +GL+ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQ--VGLENYAHSYPDE 164
Query: 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAHR 938
S G RQ + L+RAL IL++DEA +A+D +RT+ + + T++ I+H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 939 LNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
L+ + DRI ++ +G V++ TP+E+L+N + + +
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+F +V Y P L G++ +I + V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 804 IDGFDIAKF---GLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 859
++G D++ + LR+ +G++ Q +L V N+ E + E +R +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--V 117
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
A+ +GL + S G++Q ++++RA++ IL+ DE T +D T I
Sbjct: 118 PAALEL--VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDC--DRILLLDSGRV 956
+++ K+ T +++A ++D R++ L+ G++
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 8e-18
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 61/217 (28%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ + R+ L G+S ++ + ++G GAGKS+++ L + + + G IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
+DG V F+ +DA
Sbjct: 59 VDG--------------------KEVSFASP-------------------------RDA- 72
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKT 922
RR + + Q+S VG+RQ++ ++RAL R +++L+LDE TAA+ + L K
Sbjct: 73 RRAGIAMVYQLS-------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 923 IREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 956
IR ++ ++ I+HRL+ + + DR+ +L GRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIRGT 185
+++ I G + +VG +G GK++L A+LG +L +S IR
Sbjct: 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82
Query: 186 -VAYVPQVSWIFNA-----TVRDNILFG----------SAFEPARYEKAIDVTSLQHDLD 229
+ V Q ++ T+ + I A + A + V + L+
Sbjct: 83 EIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN 140
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 287
P +SGGQ+QRV++ARA+ N + I D+P SALD V Q+ D +
Sbjct: 141 RYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 288 CIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326
++ EL G T + +T+ L ++++ DR+ +++ G + EEG
Sbjct: 190 KLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DAS--AV 181
L +I+LDI G LVA++G +G GK++L+ + G P + D S AV
Sbjct: 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74
Query: 182 IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
V +V Q + + TV DNI FG R +A ++ L L+ + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTR 298
+SGGQ+QRV++ARA+ V + D+P ALDA V R+ R +R + G T
Sbjct: 135 PA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-RKELRRWLRKLHDRLGVTT 191
Query: 299 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 327
V VT +Q L DR++++++G +++ G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 92 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN------GYFSWDSKAERPTLL--NINL 143
L L E+ I LP P +S+RN + +++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQVSWI 195
D+ G + +VG +G GK++L + G LPP S D ++ +
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 196 F---------NATVRDNI--------LFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVT 237
F TV D + A AR + +++ L + LD P
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--- 429
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 295
+SGGQ+QRV++ARA+ + I D+P+SALD V QV + + ++ EL G
Sbjct: 430 --------LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-G 480
Query: 296 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
T + +++ L + + DR+ ++++G + EEG E + N
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 2e-17
Identities = 57/227 (25%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------DIAKFG 813
+L ++ IP + GI+G +G+GKS++L L R++E+ +I +DG DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 814 LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
+ LRK +G++ Q P F ++ N+ P H + E + +++ +R+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI--KKIVEECLRKVGLWKE 142
Query: 872 A--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
+++ S GQ+Q L+++RAL + K+L++DE T+ +D+ I+K I E
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202
Query: 930 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
++I++H + D + L +G ++E+ + E+ ++ + ++
Sbjct: 203 IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 182
L+ + +P + AI G +G GKT+LI + G P + D+ I
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE 73
Query: 183 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDV 236
+ + YV Q + +F + +VR N+ +G + +E+ I++ + H L LPG
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296
+SGG+KQRV++ RA+ S+ + + D+PL+ALD ++ R L +
Sbjct: 131 --------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAE 180
Query: 297 TRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGEL 337
+ + H L +V DR++++ +G V G ++ + +L
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822
G+SF + + G++G GAGK++ + L +++ GR + G D+ + ++R+ +G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 823 IIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGE 879
I+ Q + T NL A L+ + A ++ I + +GL +
Sbjct: 77 IVFQDLSVDDELTGWENLYIH-----ARLY-GVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 880 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 937
+S G R+ L ++R+L+ R ++L LDE T +D +T A + + I + E T+L+ H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 938 RLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+ CDR+ ++D GR++ TPEEL
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
VL +S + + G +G GAGK++ + + +++ + G I DG K ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDA 872
+ +G + ++P + T R NL + D E L+ LKD+ ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID--EVLDVVGLKDSAKK------- 122
Query: 873 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CT 931
+V FS+G +Q L ++ ALL +L+LDE T +D +++ I T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 932 MLIIAHRLNTI-IDCDRILLLDSGRVLE 958
+LI +H L+ I DRI +++ G+++E
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 48/214 (22%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT------------ 185
L I+ D+ + I G +G GK++L+ + G E P + V+ GT
Sbjct: 15 LKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLP 71
Query: 186 -----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+ V Q +F + VR+N+ FG + E I V L LDLL + +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDEL---LDLL---GLDHL 124
Query: 240 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---- 294
R +SGG+KQRV++ARA+ + ++ + D+P SALD + Q + EL
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ-----LLPELKQIKK 179
Query: 295 --GKTRVLVTNQLHFLSQV----DRIILVHEGMV 322
+ VT H LS+ DRI+++ +G +
Sbjct: 180 NLNIPVIFVT---HDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I F++V +Y+ + L +SF IP IVG G+GKS++ + I +++ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT-----VRFNLDPFSEHSDADLWEALERA 857
+ I LRK +GI+ Q+P F G+ V F L+ + D ++ + A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD-EMHRRVSEA 126
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
LK + + + S GQ+Q ++++ L +++LDEAT+ +D
Sbjct: 127 -LKQ------VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 918 LIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969
+ +R+ + T++ I H L+ ++ D +++++ G V + TP E+ +
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 743 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
SIK E++ Y P L ++ I + VG++G TG+GKS+++ L +++
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 800 GRILIDGFDIA--KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALE 855
G+I+IDG DI K L D+RK +G++ Q P LF T+ ++ +L L
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI----AFGPINL--GLS 115
Query: 856 RAHLKDAIRR--NSLGLDAQVSEAGENF--SVGQRQLLSLSRALLRRSKILVLDEATAAV 911
+++ ++R N +GLD + + F S GQ++ ++++ + KIL+LDE TA +
Sbjct: 116 EEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 912 D--VRTDALIQ-KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
D R + L + K + +E+ T+++++H + + DRI++++ G+ TP E+
Sbjct: 176 DPKGRDEILNKIKELHKEYNM-TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 968 N 968
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 9e-17
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+L+ LS ++P ++G G GKS++L R++ + G + + I+ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQV 874
+ L ++PQ + G TVR L + LW L + A + A+ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ--TRINHLA 132
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 933
+ S GQRQ L+ L + + +++LDE T +D+ + + +RE + T++
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 934 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ H LN CD +++L +G V+ TPEE+++
Sbjct: 193 TVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E V + VL ++ ++ + V I+G +G GKS++L + + + G +L
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSDADLWEALE 855
+DG + G I G + Q L TV N+ + E LE
Sbjct: 62 LDGRPVTGPG----PDI-GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
L D + S G RQ ++++RAL R K+L+LDE A+D T
Sbjct: 117 LVGLAGF-------EDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 916 DALIQK---TIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSG 954
+Q + EE + T+L++ H L DR+++L +
Sbjct: 166 REELQDELLRLWEETR-KTVLLVTHDVDEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 183
L I+L + G +V I+G +G GK++L+ + +L +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 184 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEP-ARYEKAIDVTSLQHDLDLLPGG 234
V V Q +F + TV +NI S E R + ++ L D P
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA- 134
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
+SGGQ+QRV++ARA+ N V +FD+P SALD + +V D
Sbjct: 135 ----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 295 GKTRVLVTNQLHFLSQV-DRIILVHEGMV 322
G T V+VT+++ F +V DR+I + +G +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
++ AE L +I+ +I G V I+G G GK++L+ + G P S
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GK 83
Query: 180 AVIRGTVAYVPQVSWIFN--ATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDL 230
+ G VA + ++ F+ T R+NI + ++ I+ L +D
Sbjct: 84 VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID- 142
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
P S G R++ + A + D+ + D+ L+ DA + +R
Sbjct: 143 QPVK----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 291 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 330
KT VLV++ L + Q DR I + G ++ EG+ E+
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
+++ +V + + +S I + V ++G +G GK+++L + +
Sbjct: 2 PKPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 800 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADL 850
G IL+DG DI D+ R I G++ QS LF V F L + A++
Sbjct: 60 GEILLDGEDIT-----DVPPEKRPI-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI 113
Query: 851 W----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
EALE L+ D + + S GQ+Q ++L+RAL+ K+L+LDE
Sbjct: 114 KARVEEALELVGLEGF-------ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDE 162
Query: 907 ATAAVD--VRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-------CDRILLLDSGR 955
+A+D +R +K ++E + T + + H D DRI +++ GR
Sbjct: 163 PLSALDAKLREQM--RKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGR 214
Query: 956 VLEYDTPEEL 965
+ + TPEE+
Sbjct: 215 IEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-16
Identities = 115/542 (21%), Positives = 201/542 (37%), Gaps = 72/542 (13%)
Query: 448 TDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 507
T +SL L LL + +L + L + +L + IL P+
Sbjct: 43 TADTSL---LVLPEFLGLLLLFM---VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPL 96
Query: 508 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ----LLSTFVLIGIVSTMSL- 562
R++ D+ RN++ F + ++ Q L + + +S
Sbjct: 97 ERIERLGSARLLAGLTSDV----RNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151
Query: 563 ----WAIMPLLLLFYAAYLYYQ--STAREVKRLDSITRSPVYAQFGEALNG-----LSTI 611
W ++ + F Y+ + ARE T + + L G L+
Sbjct: 152 LTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKELTLNRE 204
Query: 612 RAYKAYDRMADINGKSMDKNIRY-TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 670
RA ++ + + + +I ++ A W I L + GL+ WL
Sbjct: 205 RAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---------- 254
Query: 671 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 730
+AST + + L + L T +L + L A + N I AP +
Sbjct: 255 --LSLGWAST-NVAATIVLVLLFLRTPLLSAVGILPTLLTA-QVAFNKIAKLELAPYKAD 310
Query: 731 SNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787
RP +P +++ +V Y+ + P+ + TI + V ++G G+GKS++
Sbjct: 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTL 365
Query: 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 847
L + + + G IL+DG ++ L D RK+ + LF + + +
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQL 423
Query: 848 ADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
+ W + LE AH L S GQ++ L+L ALL ILVLDE
Sbjct: 424 IEKWLQRLELAHKTSLNDGRFSNLK---------LSTGQKKRLALLLALLEERDILVLDE 474
Query: 907 ATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 964
A D + + K T+ I+H + I DR+L + +G++ E T EE
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE-LTGEE 533
Query: 965 LL 966
Sbjct: 534 RD 535
|
Length = 546 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 3e-16
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---------------VSDASAV- 181
+ +++ ++ G ++ IVG +G GK++L A++G LP + S
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 182 ---IRGT-VAYVPQVSW-IFN--ATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLD 229
+RG +A + Q N T+ D I L G ++A++
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE--------- 135
Query: 230 LLPGGDVTEIGERGVN------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
LL + + + +SGG +QRV +A A+ + I D+P +ALD Q
Sbjct: 136 LL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 284 VFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ D + ++ EL G + +T+ L ++++ DR++++++G + E G E++ +N
Sbjct: 193 ILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
VL G+ ++ VG+VG GAGK+++L + + G +L+ G D+
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 819 KILGIIPQSPVL---FSG--TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLG 869
+ + +PQ L F V P F ++ D RA ++ A+ R G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--G 128
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIRE 925
+ + S G+RQ + L+RAL + + +L+LDE TA++D VRT L++ + +
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR-RLVD 187
Query: 926 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ K+ I H L+ CD ++LL GRV P ++L+ +
Sbjct: 188 DGKTAVAAI--HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-16
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 34/254 (13%)
Query: 93 LKRMEEFLLAEEK--------ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 144
L+++E L E P P G + N +D R L +++
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ--VSWIFNAT 199
I G +AIVG G GK++L+ + GEL P+S V G + Y Q + T
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG--TVKVGETVKIGYFDQHRDELDPDKT 402
Query: 200 VRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257
V + + F E +V + G D + +SGG+K R+ +A
Sbjct: 403 VLEELSEGFPDGDE-------QEVRAYLGRF-GFTGEDQEKPVG---VLSGGEKARLLLA 451
Query: 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIIL 316
+ + ++ + D+P + LD + + + + G T +LV++ +FL +V RI L
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIE-SLEALEEALL-DFEG-TVLLVSHDRYFLDRVATRIWL 508
Query: 317 VHEGMVKEEGTFED 330
V + + + EG +ED
Sbjct: 509 VEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASA 180
+ + N+NL+I G + ++G +G GKT+ LI GE+ + +
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 181 V-IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPG 233
V +R + YV Q +F + TV +NI L + + + D L + L P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--ELLALVGLDPA 126
Query: 234 GDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-G 291
E +R +SGGQ+QRV +ARA+ ++ + + D+P ALD Q+ + R
Sbjct: 127 ----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 292 ELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
+ GKT V VT+ + DRI ++ G + + GT +++ +
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-16
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSL--ISAML-----GEL----PPVSDASAVIRGTV 186
L +I+LDIP G +VA++G +G GKT+L I A L G + VS A R V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KV 76
Query: 187 AYVPQVSWIF-NATVRDNILFGSAFEPARYE---KAID--VTSLQHDLDLLPGGDVTEIG 240
+V Q +F + TV DNI FG P R AI VT L L+++ + +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMV---QLAHLA 130
Query: 241 ER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGK 296
+R +SGGQKQRV++ARA+ + + D+P ALDA V R+ R +R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV-RKELRRWLRQLHEELK-F 188
Query: 297 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
T V VT +Q + DR++++ +G +++ GT + +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 7e-16
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 815
L G+S I V +G +G GKS+ L R+ +L G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 816 --DLRKILGIIPQSPVLFSGTV--------RFNLDPFSEHSDADLWEALERAHLKDAIRR 865
+LRK +G++ Q P F ++ R N + + E L+ A L D ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
++ E+ S GQ+Q L ++RA+ +L++DE +A+D + A +++ I E
Sbjct: 139 -------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 926 EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 970
K T++I+ H + D+ G ++EYD +++ +N
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-16
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 44/221 (19%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVI---------------- 182
+++L+IP G + I+G +G GK++L+ + E P + +V
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVFVDGQDLTALSEAELRQ 80
Query: 183 -RGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
R + + Q FN TV +N+ F E A KA + L+L+
Sbjct: 81 LRQKIGMIFQH---FNLLSSRTVFENVAF--PLELAGVPKAEIKQRVAELLELV------ 129
Query: 238 EIGERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 291
+ ++ +SGGQKQRV++ARA+ +N + + D+ SALD + + + + I
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 292 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
EL G T VL+T+++ + ++ DR+ ++ +G + EEGT ++
Sbjct: 190 EL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 8e-16
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 119 AISIR--NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176
ISIR N Y+ S + L +INL+I G +V + G +G GKT+L++ + G L V
Sbjct: 1 VISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQ 58
Query: 177 DASAVIRGT----------VAYVPQVSWIFNA-------TVRDNILFGSAFEP-----AR 214
+ S + G V + +IF A T R N+ +P
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA 118
Query: 215 YEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
E+A + L LD P N+SGGQKQRV++ARA+ + + D+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 272 PLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEG 320
P +ALD+ GR V + + +L+ G T ++VT+ L DRI+ + +G
Sbjct: 168 PTAALDSKSGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 8e-16
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI----LGIIPQSPVLF 831
I+G +G+GKS++L + R++E G++LIDG DIA +LR++ + ++ QS L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 832 SG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-------NSLGLDAQVSEAGENFSV 883
TV N+ F LE + A R +GL+ + + S
Sbjct: 115 PHRTVLENV-AFG----------LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TMLIIAH 937
G +Q + L+RAL IL++DEA +A+ D LI++ +++E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 938 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
L+ + DRI ++ GR+++ TPEE+L+N
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 9e-16
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPV 175
AI I N + E+ L NINLDIP + A++G +G GK++L+ ++ + +L P V
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 176 SDASAVI----------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 219
V+ R V V Q F ++ DNI +G + +K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 220 D---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276
D SL+ L + + + +SGGQ+QR+ +ARA+ +V + D+P SAL
Sbjct: 118 DEIVEESLKKAA--LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 277 DAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
D ++ + EL K T V+VT+ + +++ DR ++G + E G E + N
Sbjct: 176 DPIATGKIEELIQ--ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 24/276 (8%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI--- 820
+SF IP + VG +G GAGKS+ L L ++ G++ ++G D + LR I
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 821 ----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 876
L + P L S V L E D + E L+ L L+ +
Sbjct: 103 MGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFL-------TEILDLEGFLKW 152
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 934
S+GQR L+ ALL K+L LDE T +DV A I++ ++E E + T+L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 935 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 993
H + I CDR+LL+D G+++ T +L F + + S +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ----EQFGPYKEFSVELKQAKSLSQLA 268
Query: 994 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALA 1029
N + D R A A++ +
Sbjct: 269 LLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVR 304
|
Length = 325 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVS 176
I +R+ + K L +I+LDIP G + A++G +G GK++L+ + +P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 177 DASAV-IRGTVAYVPQVSWI---------------FNATVRDNILFG---SAFEPARYEK 217
D V + G Y V + F ++ DN+ +G +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 218 AIDVTSLQHDLDLLPGGDVTEIGER--GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
+L+ L E+ +R + +SGGQ+QR+ +ARA+ + +V + D+P SA
Sbjct: 118 ERVEEALR--KAALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 276 LDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 326
LD + + I EL + T V+VT H + Q DR + G + E G
Sbjct: 172 LDP-ISTAKIEELIA-ELKKEYTIVIVT---HNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------------VSDASAVIRGTVA 187
+++ + G + ++G G GKT+L+ + L P V D S V R
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 188 YVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246
+ T R+N+ F +R E + L L LL D R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----RRVGEF 134
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306
S G KQ+V++ARA+ + + + D+P S LD R+ D + + G+ + + H
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS---H 191
Query: 307 FLSQV----DRIILVHEGMVKEEGTFEDL 331
+ +V DR+I++H+G V EG+ E L
Sbjct: 192 IMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 24/243 (9%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++F DV R+ VL GL+F++ +KV ++G +G+GKS++L L + ++ G+I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 804 IDGFDI-------AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA--- 853
++G + D + + + + ++F FNL P D ++ EA
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS---FNLFPHKTVLD-NVTEAPVL 114
Query: 854 ---LERAHLKD-AIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
+ RA + A+ + +GL + S GQ+Q ++++RAL R K+++ DE T
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 909 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+A+D + IR TML++ H + + DR+ D GR++E P+E+
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 966 LSN 968
Sbjct: 235 FRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-15
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 35/220 (15%)
Query: 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI--- 182
L+ N +P + A+ G +G GKTSLI+ + G P + DA I
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 183 --RGTVAYVPQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTE 238
+ + YV Q + +F + TVR N+ +G A++++ + + ++H LD PG
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG----- 127
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 298
+SGG+KQRV++ RA+ + ++ + D+PL++LD R++ R L +
Sbjct: 128 ------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER--LRDEIN 179
Query: 299 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 334
+ + H L +V DR++++ G VK G E++ +
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-15
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 744 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
++ + R+ P V +S ++ + ++G GAGKS+++ LF + + + G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 802 ILIDG--------FDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 852
I +DG D + G+ G++ Q +L TV N+ E
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGI-------GMVHQHFMLVPTLTVAENIILGLE-PSKGGLI 112
Query: 853 ALERAH--LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910
+A +K+ R GL + SVG++Q + + +AL R +++L+LDE TA
Sbjct: 113 DRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 911 V-DVRTDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEE 964
+ D L + + + E K T++ I H+L ++ DR+ +L G+V+ D E
Sbjct: 171 LTPQEADELFEILRRLAAEGK--TIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAE 227
|
Length = 501 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 741 SGSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
S I+ +++ +Y+ + L+ +SF + + + I+G G+GKS+ + + ++E E
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 800 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEA 853
G+I+IDG + + + D+R +G++ Q+P F G V F L E+ E
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEM 117
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
ER + +A+ +G+ S GQ+Q ++++ A+ R KI++LDEAT+ +D
Sbjct: 118 KERVN--EAL--ELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 914 --RTDALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
R + LI+ K IR++++ T++ I H L+ + DR+L++ +G+V TP EL S
Sbjct: 174 EGRLE-LIKTIKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 114 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173
+S P + +R S+D K + N++L I G + ++G +G GKT+++ ++
Sbjct: 9 SSLSPLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFE 64
Query: 174 PVSDASAVIRG-TVAYVP----QVSWIFNA-------TVRDNILFG--------SAFEPA 213
++ G + +VP V+ +F + TV +N+ FG + P
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP- 123
Query: 214 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDP 272
R +A+ + L+ E +R +SGGQ+QRV++ARAV + V + D+
Sbjct: 124 RVMEALRMVQLE------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 273 LSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEE 325
LSALD + +Q ++ EL G T V VT +Q L+ DRI+++ +G ++++
Sbjct: 172 LSALDYKLRKQ-----MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 326 GT 327
GT
Sbjct: 227 GT 228
|
Length = 375 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 185
L ++L++P G + ++G G GKT+L+ ++G LP S + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERAR 74
Query: 186 --VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE--IG 240
+AYVPQ IF TV +N+L G A P R + I +L P V + +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR-SRKIP----DEIYELFP---VLKEMLG 126
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTR 298
RG ++SGGQ+Q++++ARA+ + + + D+P + + + + R IR G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAI 185
Query: 299 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 332
+LV L F ++ DR ++ G V G ++L
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 818
V+ +S T+ + VG++G GAGK++ + IV + G I+ID DI+ L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 819 KILGIIPQSPVLFS---------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 869
+ +G +PQ +F ++ D +E + E +E H++ R+S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL--RDSM- 134
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
G++ S G+R+ + ++RAL K ++LDE A VD + I++ I S
Sbjct: 135 --------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 930 -CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+LI H + + C+R ++ G ++ + TP E+L +E
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 173
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 174 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 219
P A +R V V Q ++ + TV++N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLS 114
Query: 220 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 279 HVGRQVFDRCIRGELSGK--TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 327
+ Q+ I EL+ T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 3e-15
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER----GRILIDGFDI--AKFG 813
LHG+S + ++G +G GKS+ L L R+ + +E G I +G +I +K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHL----KD 861
L++LRK +G++ Q P F +V N+ E D + E+L++A + KD
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ RN+ + FS GQ+Q + ++RAL R K+++LDE T+A+D + + I++
Sbjct: 140 NLDRNA-----------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 922 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
T+ E T +++ H L D+ L +G ++E EE+
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 61/235 (25%), Positives = 125/235 (53%), Gaps = 25/235 (10%)
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 807
D+ Y P+ L G++F + V ++G GAGKS++ I++ G +LI G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 808 DIA--KFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWEALER 856
I K L+++RK +GI+ Q+P LF+ TV NL S+ E +E+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSK-------EEVEK 116
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+K+A++ +G++ ++ + S GQ++ ++++ L + +I+VLDE T+ +D
Sbjct: 117 -RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 917 ALIQKTIRE-EFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 969
+ I K + + + T++I H ++ + + D++ ++ G++++ TP+E+ S+
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLMD 816
L+ +S +P G++G +GAGKS TL R V LER G +++DG D+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKS----TLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 817 L---RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRRNS----- 867
L R+ +G+I Q L S F ++ LE + KD I+R
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEIKRKVTELLA 126
Query: 868 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926
+GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T I + ++E
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 927 FKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 980
+ T+L+I H ++ + CD + ++ +G ++E T E+ S+ + + K ++ST
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IR 183
P L N++ + G + IVG TG GK++LI A+ L D S + +R
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 184 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243
++ +PQ +F+ T+R N+ D D ++ + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---------------DPFDEYSDEEIY---GALRVSEGG 123
Query: 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 303
+N+S GQ+Q + +ARA+ V + D+ +++D + + IR E + T + + +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAH 182
Query: 304 QLHFLSQVDRIILVHEGMVKEEGT 327
+L + D+I+++ G VKE
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 4e-15
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDA 178
+ L NI+L + G +AI G +G GK+ SLIS G L VS
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 179 SA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
R V+Y Q +F TV DN++F R ++A + L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFAL----PDS 125
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
+ + +SGG+KQR+++ R + + + D+ SALD R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-15
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 755 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKF 812
P P VL GL+F + + ++G GAGKS++L L ++ + G +LIDG D ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 813 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL 868
GL++ R+ +G++ Q P LF+ V + + L L A ++ +R ++
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 928
G S G+++ ++++ A+ R +L+LDE TA +D + +R
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 929 SCTMLIIA 936
++I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E+V R+ L +SF++ + G++G GAGK++ + + I+ + G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
DG + +I G +P+ L+ V L ++ EA R
Sbjct: 59 FDG---KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR------ 108
Query: 863 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
I L L ++ E S G +Q + A++ ++L+LDE + +D L++
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 921 KTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEY 959
IRE ++ +I+ H++ + + CDR+LLL+ GR + Y
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-R 818
+L G+S +P + ++GR G GK+++L TL ++ ++ G I +DG DI K + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 819 KILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDA 872
+ +PQ +F TV NL S E E LK+ + R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR------ 128
Query: 873 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSC 930
G + S GQ+Q L+++RAL+ R K+L+LDE T + I + IR
Sbjct: 129 -----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 931 TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 965
+L++ L+ + DR +++ GRV+ +EL
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-15
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL 814
VL G++ IP + ++G +G+GKS++L R++EL G + +DG DI K +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-----------HSDADLWE----ALERAHL 859
++LR+ + ++ Q P NL F S +L E ALE+A L
Sbjct: 78 IELRRRVQMVFQIPNPIP-----NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
D ++ + L A S GQ+Q L ++RAL + ++L+ DE TA +D A I
Sbjct: 133 WDEVK-DRLDAPAG------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 920 QKTIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968
+ E K T++++ H R++ D + L G+++E+ E+ +N
Sbjct: 186 ESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-15
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 730 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 789
E+ PG S+ +I V Y + V++GLSFT+ + G++G GAGKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 790 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTVRFNLDPFSEH--- 845
+ + + G+I + G + + +I G++PQ L TVR NL F +
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 846 ----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901
+A + LE A L+ DA+VS+ S G ++ L+L+RAL+ ++
Sbjct: 145 STREIEAVIPSLLEFARLESKA-------DARVSD----LSGGMKRRLTLARALINDPQL 193
Query: 902 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH------RLNTIIDCDRILLLDSG 954
L+LDE T +D LI + +R + T+L+ H RL CDR+ +L++G
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAG 248
Query: 955 RVLEYDTPEELL 966
R + P L+
Sbjct: 249 RKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 7e-15
Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 743 SIKFEDVVLRYRPELPPVLHGL---SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
SIKFE+V Y P P GL SF + V +VG TG+GKS+++ +++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 800 GRILIDGFDI----AKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 853
G I I G+ I L LRK + ++ Q P LF TV +++ ++ EA
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
E+A +++ +GL + S GQ + ++++ + +IL LDE A +D
Sbjct: 122 KEKA--LKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
Query: 913 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966
+K + + FK T++++ H ++ + + D +L+L+ G+++++ +P+E+
Sbjct: 178 PEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 967 SN 968
S+
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+F++V + P VLH + I + V I+G +G+GKS++L + ++ E+ G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 804 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE------ 855
+DG + K +R+ G++ Q +F L P ALE
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQ---------QFYLFPH--------LTALENVMFGP 102
Query: 856 ---RAHLKDAIRRNSLGLDAQV--SEAGENF----SVGQRQLLSLSRALLRRSKILVLDE 906
R K+ + + L A+V +E ++ S GQ+Q ++++RAL + K+++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 907 ATAAVD--VRTDAL-IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTP 962
T+A+D +R + L + + + EE TM+I+ H + R++ +D GR+ E P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 963 EELLSN 968
+ L+ N
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-15
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 64/254 (25%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I E++ L Y P+L +S T+ P +++G+VGR GAGKS++L L +E + G +
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER------ 856
LR +G + Q P L TV + +L E L
Sbjct: 62 RPK---------GLR--VGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEAYA 106
Query: 857 ------AHLKDAIRRNSLGLDAQVSEAG-----------------ENFSVGQRQLLSLSR 893
L + LD EA + S G R+ ++L+R
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEF---KSCTMLIIAH-R--LNTIIDC 945
ALL +L+LDE T +D+ ++I E++ T+++++H R L+ +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLKRYPGTVIVVSHDRYFLDNV--A 217
Query: 946 DRILLLDSGRVLEY 959
IL LD G++ Y
Sbjct: 218 THILELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 812
+L ++ I + +G +G GKS+ L R+ + +G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFN----------------LDPFSEHS--DADLWEAL 854
++ LR +G++ Q P F ++ N LD E S LWE
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-- 137
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
L D ++ ++ S GQ+Q L ++RA+ + +L++DE +A+D
Sbjct: 138 ---ELGDRLKDSAF-----------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 915 TDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973
+I+ I+E K+ T++++ H + DR+ SGR++EY+T +E+ N SS
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243
Query: 974 SK 975
+K
Sbjct: 244 TK 245
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--------VELERGRILIDGFDI-- 809
+ ++ I + I+G +G GK+++L ++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 810 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKD 861
+ + + RK +G++ Q P F ++ N+ D + E+L++A L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
++ ++++ G S GQ+Q L ++RAL ++++LDE T+A+D I+K
Sbjct: 135 EVKS-------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 922 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPE 963
+ E ++ T++I+ H + I D I + G ++EY T E
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-15
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPV-------SDASAVIRGTVAYVPQ---VSWIFN 197
G L+ ++G G GKT+L+ A+LG +PP + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 198 ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRV 254
+V ++ G R D +++ L + +TE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDR 313
+ARA+ + V + D+P + LD + + I +G ++ T+ L ++ DR
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR 182
Query: 314 IILVHEGMVKEEGTFEDLSN 333
++L++ G V +GT + L +
Sbjct: 183 VVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ ED+ RY+ + L GLS +IP K ++G GAGKS++L L I +RGR+
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTV--RFNLDPFSEHSDADLWEALERAHL 859
+ G ++ +R +G++ Q P +FS TV P + D D E R
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRV-- 119
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
++A++ ++ + + + S GQ++ ++++ L ++VLDE A +D R +
Sbjct: 120 EEALK--AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 920 QKTIREEFKSCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ + +I+A H ++ + D++++L GRVL LL++E
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
Length = 274 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 118 PAISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176
+S+RN + LN ++L+I G + IVG +G GK++L + G P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 177 -------------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAID 220
+ V V Q + N TV + EP R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-----SEPLRPHGLSK 116
Query: 221 VTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
S Q +LL D + R +SGGQ+QR+++ARA+ + I D+P SA
Sbjct: 117 --SQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 276 LDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 332
LD V Q+ + ++ E G T + +++ L + + DRI ++ G + E G E+L
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 333 NNG 335
++
Sbjct: 231 SHP 233
|
Length = 252 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----- 179
K +P + +++L++ G + ++G G GKT+ + + GEL P ++ S
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 180 AVIRGTVAYVPQVSWIFNA-----TVRDNILFGSAF-------EPARYEKAIDVTSLQHD 227
R ++ Y PQ F+A TVR+++ F + E + V L
Sbjct: 71 KAARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
+ +SGG K+++S+A A+ V + D+P S LD R ++D
Sbjct: 127 ANKRAR-----------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD- 174
Query: 288 CIRGELSGKTRVLVTNQLH---FLSQVDRIILVHEGMVKEEGT 327
I G++ +L T+ + L DRI ++ +G ++ G+
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALC--DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA------- 187
L ++NL+I G +VAI+G +G GK++L+ ++ G + P + + G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKE 75
Query: 188 ---YVPQVSWIF-------NATVRDNILFG------------SAFEPARYEKAIDVTSLQ 225
+ IF +V +N+L G F +A+D +L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
+ +L + +R +SGGQ+QRV++ARA+ + + D+P+++LD ++V
Sbjct: 134 R-VGILD-----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 286 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 332
D + G T ++ LH + DRII + G + +G +L+
Sbjct: 188 DILKDINQEDGITVIVN---LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L ++ +P V ++G +G+GKS++L + + + + GRI ++G D + D RK
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD-RK 73
Query: 820 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
I G + Q LF TVR N+ A E + K R L Q+ G
Sbjct: 74 I-GFVFQHYALFKHLTVRDNI--------AFGLEIRKHPKAKIKARVEELLELVQLEGLG 124
Query: 879 ENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEF 927
+ + S GQRQ ++L+RAL ++L+LDE A+ DA ++K +R +E
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL----DAKVRKELRSWLRKLHDEV 180
Query: 928 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
T+ + + + DRI+++ +G++ + +P+E+ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+ GLSFT+ + + + G G GK+++L L ++ + G + +G +A+ R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 819 KILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 875
IL + + + NL + + +AL L + L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
S GQ++ L+L+R L R+ + +LDE T A+D AL+ +R
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK-FGLMDLRK 819
FT+P I GR+G+GK++++ + + + G I+++G FD K L ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 820 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
+G + Q LF +VR NL + + ER + + LG+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIE-LLGIGHLLGRLP 129
Query: 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLII 935
S G++Q +++ RALL ++L++DE AA+D R ++ + + EF +L +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYV 188
Query: 936 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+H L ++ DR+++L+ GRV E+ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 27/213 (12%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLMD 816
VL ++ I P + V + G +G+GK+++L + + ++ G + + G ++ ++ L+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 817 LRKILGIIPQSPVLF-SGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLG 869
LR+ +G I Q+ L T R N L P + +A RA L+ ++G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA---RERARAMLE------AVG 130
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIRE 925
L + N S GQ+Q ++++RAL+ R K+++ DE TAA+D ++ L+QK RE
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 926 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957
+ CT+LI+ H N I+D DRI+ ++ G++L
Sbjct: 191 --QGCTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E++ L P+ +L LSF I P D++ I G +G GKSS+ L + GRI
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
G+ + +L +PQ P L GT L++ +
Sbjct: 59 ---------GMPEGEDLL-FLPQRPYLPLGT------------------------LREQL 84
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
+ S G++Q L+ +R LL + K + LDEAT+A+D ++ + + +
Sbjct: 85 IYPW----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 924 REEFKSCTMLIIAHR 938
+E T++ + HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 816
+ G+S T+ +G+VG +G+GKS++ L R++ +G I DG DI +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 817 LRKILGIIPQSPVLFSGTVRFNLDP--------------FSEHSDADLWEALERAHLKDA 862
LR+ + ++ Q P + +L P A E +R +A
Sbjct: 361 LRRRMQVVFQDP--YG-----SLSPRMTVGQIIEEGLRVHEPKLSAA--ERDQRV--IEA 409
Query: 863 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ +GLD A + FS GQRQ ++++RAL+ + ++++LDE T+A+D +Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQA 463
Query: 922 TIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+ + + + L I+H L + C R++++ G+++E E + +N
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Query: 753 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812
Y +L+ +SF++ + I G +G GKS++L + ++ G +L +G DI+
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
R+ + Q+P LF TV NL P+ + + A D + R L
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-----DPAIFLDDLER--FALP 127
Query: 872 AQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREE 926
+ S G++Q +SL R L K+L+LDE T+A+D + +I + +RE
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE- 186
Query: 927 FKSCTMLIIAHRLNTIIDCDRILLL 951
++ +L + H + I D+++ L
Sbjct: 187 -QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 2e-14
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE- 798
+ G I+ + + + Y VL LS I + + ++G++G GK+++L + V+
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 799 -RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLWE- 852
GRI I D+ ++ L ++ Q+ LF + F + AD+ E
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 853 ---ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
AL+ L DA L AQ+S G +Q ++++RA+ +L+LDE +
Sbjct: 118 VADALKLVGLGDAAAH----LPAQLSG-------GMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 910 AVDVRTDALIQ---KTIREEFKSCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEEL 965
A+D A ++ + EE T+L + H + + + D+ ++ GR+ + P+ L
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Query: 966 LSNEGSSFSKMVQSTGAAN 984
F+ + GAAN
Sbjct: 227 YDAPADGFA--AEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 2e-14
Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 744 IKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
++ E++V +Y E L+G+SF+I + V I+G+ G+GKS+ + + E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 860
IDG + + +LR+ +G++ Q+P TV ++ E+ E ++R +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VD 122
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+A+ ++ LD + E S GQ+Q ++++ + R +I++LDE+T+ +D I
Sbjct: 123 EALLAVNM-LDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 921 KTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967
+ I E E T+L I H L+ DRIL++ +G +++ P EL +
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ ++V +R + +L LS+ + P + IVG GAGK+++L+ L G +
Sbjct: 32 IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 804 IDGFDIAKFGLM-DLRKILGIIPQSPVL-----------------FSGTVRFNLDPFSEH 845
+ G K + +LRK +G++ S L F ++ + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA- 146
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
E L A LG + S G+++ + ++RAL++ ++L+LD
Sbjct: 147 ------EDLAAAQWLL----ELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 906 EATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVL 957
E +D+ + + E + +L + H I C LLL G V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPPVS 176
I + N FS+ + +E L N++ +I G VAI+G G GK S IS +L G L P S
Sbjct: 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGK-STISKILTGLLKPQS 63
Query: 177 -----DASAVIRGTVAYV-PQVSWIFN--------ATVRDNILFG---SAFEPARYEKAI 219
D + + + + ++ IF ATV D+I FG P + + I
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
D + + ++ + + N+SGGQKQRV++A + N ++ IFD+ S LD
Sbjct: 124 DDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 280 VGRQVFDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 336
R++ I +L KT + +T+ + D++I+ EG + +G +++ NN E
Sbjct: 177 GKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 337 LFQK 340
+ +K
Sbjct: 235 ILEK 238
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAV 181
L +++L+I G L+A++G +G GKT+L+ A+ G + ++ A
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 182 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
RG + + V DN+ FG + KA + L L+ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAA--H 133
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRV 299
+SGG +QR+++ARA+ DV + D+PLSALDA++ + + EL T +
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 300 LVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
VT +Q L+ D+ ++ +G + G + L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-14
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 299
G+ V++SGGQ+QRVS+ARA+ +V +FD+P SALD + +V + GKT V
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 300 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+VT+++ F V +I +H+G ++EEG E L N
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+L L+ TI I+G +G+GKS++LN + + + + G++ ++G + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 820 I----LGIIPQSPVLF-SGTVRFNLD---PFSEHSDAD----LWEALERAHLKDAIRRNS 867
LG + Q+ L + TV NLD + + S + EALE+ L +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927
L L ++ E S G++Q ++L+RA+L+ +++ DE T ++D + + + E
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 928 KSCTMLIIA-HRLNTIIDCDRILLL 951
+II H DR++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-14
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 32/226 (14%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820
++ S + + I+G +G+GKS+++ L R++E RG IL+DG DIAK +LR++
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 821 -----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 869
++P VL V F L E E ERA +A+ +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVL--ENVAFGL----EVQGVPKAEREERAL--EALEL--VG 153
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
L+ + S G +Q + L+RAL IL++DEA +A+ D LI+ +++E
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL----DPLIRTEMQDELLE 209
Query: 930 C------TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
T++ I H L+ + DRI ++ G +++ TPEE+L N
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 55/215 (25%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L+ ++F P + ++ ++G GAGKS++ I++ G +LI G I K + ++RK
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 820 ILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 877
+G++ Q+P +FS TV ++ F + L E + A+ LGL+
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-AFGP-INLGLDEETVAHRVSSALH--MLGLEELRDRV 134
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-- 935
+ S G+++ ++++ + ++LVLDE TA +D + + + + ++ M +I
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194
Query: 936 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
H+L+ + + D I ++D GR++ Y T EE+
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 806
+ + LP + F + + GI G +GAGKS++L + + + + G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 807 --FDIAKFGLMDL----RKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEA-L 854
FD K ++L RKI G++ Q LF VR F L D + L
Sbjct: 60 VLFDSRK--KINLPPQQRKI-GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELL 116
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
+ L + R L S G++Q ++L+RAL + ++L+LDE +A+D
Sbjct: 117 DLLGLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 915 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960
+ +++ K+ ++ + H L+ DRI++++ GR+
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 137 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP----------------PVSDA 178
T+L+ I+L++ G +VAI+G +G GKT+L+ + L E P +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 179 SAVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP-- 232
+IR +V V FN TV +NI+ G P + + +LL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKV 132
Query: 233 --GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
G T R +SGGQ+QRV++ARA+ +V +FD+P SALD + +V + IR
Sbjct: 133 GLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIR 188
Query: 291 GELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326
K T V+VT+++ F V DR I + +G + E+G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 52/255 (20%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
I + + F + A L +++ + G VAIVG G GK++L + G L P
Sbjct: 4 EIIRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--- 59
Query: 178 ASAVIRGTVAYVP-----------QVSWIFN--------ATVRDNILFGSAFEP------ 212
+ I TV + QV +F ATV+D++ FG E
Sbjct: 60 EAGTI--TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG--LENIGVPRE 115
Query: 213 ---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269
R ++A+ ++ L+ P +SGGQKQRV++A + D+ I
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIIL 164
Query: 270 DDPLSALDAHVGRQ-VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326
D+ S LD GR+ V + R ++ + G T + +T+ L +Q DR+I++++G + EEG
Sbjct: 165 DEATSMLDP-RGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 327 TFEDLSNNGELFQKL 341
T E++ +G + Q++
Sbjct: 223 TPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER-- 799
SI+ +V R+ L +S IP + V ++G +G+GK+ TL R++ LER
Sbjct: 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPD 55
Query: 800 -GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLW 851
G IL G D + + R + G + Q LF TV N+ P SE
Sbjct: 56 SGTILFGGEDATDVPVQE-RNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA-- 111
Query: 852 EALERAH-LKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
E + H L ++ + L AQ+S GQRQ ++L+RAL K+L+LDE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQLSG-------GQRQRVALARALAVEPKVLLLDEPF 164
Query: 909 AAVDVRTDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961
A+ DA ++K +R + T + + H ++ DR+++++ GR+ + T
Sbjct: 165 GAL----DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
Query: 962 PEELLSNEGSSF 973
P+E+ + S F
Sbjct: 221 PDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
S I F +V RY +L V+ GLSF + + G++G GAGK++ L L + +
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 800 GRILIDGFDI---AKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPFSEH---SDADL 850
G I + G + A+ R+ +G++PQ L F TVR NL F + S A
Sbjct: 62 GSISLCGEPVPSRARHA----RQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAA 115
Query: 851 WEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
LE A L++ DA+V E S G ++ L+L+RAL+ +LVLDE
Sbjct: 116 RALVPPLLEFAKLENKA-------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDE 164
Query: 907 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAH------RLNTIIDCDRILLLDSGRVLEY 959
T +D + L+ + +R T+L+ H RL CDR+ +++ GR +
Sbjct: 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAE 219
Query: 960 DTPEELLSNE 969
P L+ +E
Sbjct: 220 GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181
ER L ++N+ IP GS VAI+G TG GK++L+ + G L P S +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 182 ----IRGTVAYVPQV--SWIFNATVRDNILFG---------SAFEPARYEKAIDVTSLQH 226
+R V V Q +F TV +I FG A + AR + I++ L
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR--EMIELVGLPE 136
Query: 227 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--- 282
+ L P +SGGQ +RV++A + +V + D+P + LD GR
Sbjct: 137 ELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEM 184
Query: 283 -QVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 336
++F + + + G T VLVT+ + ++ D+I+++H+G V +GT ++ + +
Sbjct: 185 MEMFYKLHKEK--GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
Length = 290 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I E+V Y + VL +S IP I+G GAGKS++L+ + R+++ + G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFS---------EHSDAD 849
IDG ++ +L K L I+ Q + S TVR F P+S +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-- 117
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
EA+E HL+D R LD S GQRQ ++ L + + ++LDE
Sbjct: 118 --EAIEYLHLEDLSDRY---LD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 910 AVDVRTDALIQKTIR---EEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEEL 965
+D++ I K +R +E T++++ H +N D I+ L +G+V++ +P+E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 966 LSNE 969
+ E
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 33/218 (15%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRGTV 186
L +I+L + G V ++G +G GKT+L+ + G E ++ R
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-Y 78
Query: 187 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTEIGERG 243
V Q +F N TV DNI +G + +A + LDL LPG + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 297
+SGGQ+QRV++ARA+ ++ + + D+PLSALDA V +R E+ G T
Sbjct: 135 --LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH-----LRTEIRQLQRRLGVT 187
Query: 298 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
++VT +Q LS DRI++++ G++++ GT +++ +
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 7e-14
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAKFG-- 813
L G+S IP ++G +G GKS+ L L R+ + + G + +DG DI + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSD------------------ADLWE- 852
L++LRK +G++ QSP F ++R N+ P +H D +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 853 ALERAHL----KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
+L +A L D + N+LGL S GQ+Q L ++R L +++++DE
Sbjct: 180 SLRQAALWDEVNDRLDDNALGL-----------SGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 909 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELL 966
+A+D + I+ I E + T++++ H + I + L G ++EYD +++
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 967 SNEGS 971
N S
Sbjct: 289 ENPES 293
|
Length = 305 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 8e-14
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 55/236 (23%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV-------------- 181
++ ++ G ++ IVG +G GK+ L A++G LP + +
Sbjct: 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82
Query: 182 --IRGT-VAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSL--- 224
IRG +A + Q + +R + + E+AI++ L
Sbjct: 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--LHGKGLSKKEAKERAIELLELVGI 140
Query: 225 ---QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
+ L P +SGG +QRV +A A+ N + I D+P +ALD V
Sbjct: 141 PDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 282 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
Q+ D + ++ E G +L+T+ L ++++ DR+ +++ G + EEG E++ N
Sbjct: 190 AQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 8e-14
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VELERGRILIDGFDIAKFG 813
+ G+SF I + + +VG +G+GKS ++ + G IL DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 814 LMDLRKI----LGIIPQSPVLFSGTVRFNLDP-----------FSEH---SDADLW---- 851
LR + +G+I Q P+ +L+P H S A
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911
E LE + + +R LDA E S GQRQ + ++ AL +L+ DE T A+
Sbjct: 137 ELLELVGIPEPEKR----LDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 912 DVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
DV A I ++E E +L I H L + DR+ ++ G ++E T E L +
Sbjct: 189 DVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 968 N 968
Sbjct: 248 A 248
|
Length = 534 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------ELPPVSDASAVI---RGTV 186
L NI+ I G V ++G TG GK++L+SA L ++ VS S + R
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79
Query: 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246
+PQ +IF+ T R N+ + K + L+ ++ PG + + G +
Sbjct: 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306
S G KQ + +AR+V S + + + D+P + LD + QV + ++ + T +L +++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 307 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS 366
+ + R +++ E V++ + + L N F++ + + +++ + +
Sbjct: 199 AMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSK---RKP 255
Query: 367 KPAANGVDNDLPKEASDTR 385
+P + + +E DTR
Sbjct: 256 RPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 53/212 (25%)
Query: 128 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 181
S SK+ + L N++ G L AI+G +G GK++L++A+ G + + V
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 182 -----IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 235
R + YVPQ + TVR+ ++F +
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------- 109
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS 294
RG +SGG+++RVS+A + SN + D+P S LD+ QV +R +
Sbjct: 110 ------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT 160
Query: 295 GKTRVLVTNQLHFLSQV----DRIILVHEGMV 322
G+T + +Q S++ D+++L+ +G V
Sbjct: 161 GRTIICSIHQP--SSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAKFGLM 815
L +S I + V ++G +GAGKS++L + + + GRI ++G FD++ +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 816 DLRKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
D RK+ G + Q LF TV F L E EA RA +++ +R
Sbjct: 76 D-RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEELLRL----- 124
Query: 871 DAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK---TI 923
Q+ + + S GQRQ ++L+RAL K+L+LDE A+D + +++ +
Sbjct: 125 -VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 924 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973
+ T + + H ++ DR+++L+ GR+ + P+E+ + S F
Sbjct: 184 HDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 29/309 (9%)
Query: 32 SFILNSIPVLVTV-VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
+ ++I +L + + F + LG T A L L LR PL ++ ++ A
Sbjct: 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLL-FLRTPLLSAVGILPTLLTAQ 293
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 150
V+ ++ + LA K P P + +RN F++ A + INL I G L
Sbjct: 294 VAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAF--HVGPINLTIKRGEL 351
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVSWIFNA 198
V ++GG G GK++L + G P S D V R + V +F
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF-- 409
Query: 199 TVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257
D +L P EK + L H L G + +S GQK+R+++
Sbjct: 410 ---DQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN------LKLSTGQKKRLALL 460
Query: 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQVDRIIL 316
A+ D+ + D+ + D R+ + + + GKT +++ H+ DR++
Sbjct: 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520
Query: 317 VHEGMVKEE 325
+ G + E
Sbjct: 521 MRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ + V Y LP + + V I+G +GAGKS++LN + +E G I
Sbjct: 1 LALDKVRYEYE-HLP---MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
++ GL ++ + ++ Q LF+ TVR N+ H L A ++ + DA
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDA 112
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDAL 918
+ +G+ + E S GQRQ ++L+R L+R + IL+LDE +A+D AL
Sbjct: 113 AQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 956
+++ E + T+L++ H L+ +I ++ G++
Sbjct: 171 VKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
++ G+ T PP G++G G+GKS++L L + + G + + G D+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 819 KILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLD 871
+ + ++ Q P+ V P LW A + H + R L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS-----LW-AGDSPHDAAVVDRALARTELS 128
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 931
S G+RQ + ++RAL + K+L+LDE T +DVR +RE +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 932 MLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
++ A H LN CD +++LD GRV+ P E+L+
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 37/232 (15%)
Query: 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172
+T+ L IR Y S + + E L I+LDI G +VAIVG +G GK++L++ +LG L
Sbjct: 1 MTALLELKDIRRSYPSGEEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCL 57
Query: 173 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-------FGSAFE-------------- 211
+ + + G AT+ + L FG F+
Sbjct: 58 DKPTSGTYRVAGQDV----------ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107
Query: 212 --PARYEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFI 268
PA Y L +LL + + + + +SGGQ+QRVS+ARA+ + V +
Sbjct: 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167
Query: 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320
D+P ALD+H G +V + G T ++VT+ +Q +R+I + +G
Sbjct: 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 744 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLFRIVE 796
IK ++V +Y L ++ + + + I+GR G+GKS++ +N L E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 797 LERGRILIDGFDIAKFG-LMDLRKILGIIPQSP------VLFSGTVRF---NLDPFSEHS 846
G++ +DG D + L D+R G++ Q+P + V F NL E
Sbjct: 65 ---GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
+ E+L++ + + RR++ L S GQ+Q ++++ L R + ++ DE
Sbjct: 122 RERVDESLKKVGMYE-YRRHAPHL----------LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 907 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 964
TA +D + TI+E K T+++I H + ++ DRI+++DSG+V+ TP+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 965 LLSN 968
+
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 744 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
IK +V RY R + V +S + + GIVG +GAGK+++ + ++E
Sbjct: 280 IKVRNVSKRYISVDRGVVKAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 800 G----RILIDGFDIAKFGLMD---LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852
G R+ + D+ K G ++ +GI+ Q L+ R LD +E +L +
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPD 396
Query: 853 ALERAHLKDAIRRNSLGLDAQVSEA-----GENFSVGQRQLLSLSRALLRRSKILVLDEA 907
E A +K I +G D + +E + S G+R ++L++ L++ +I++LDE
Sbjct: 397 --ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 908 TAAVDVRTDALIQKTI---REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963
T +D T + +I REE + T +I++H ++ ++D CDR L+ G++++ PE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 964 ELLS 967
E++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 1e-13
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELERGRILIDGFDIAKFGLMD 816
L ++ I + ++G +G GKS+ L R I +++ G + I+G D+ ++
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID-GLVEIEGKDVKNQDVVA 76
Query: 817 LRKILGIIPQSPVLFSGTVRFNLD---------PFSEHSDADLWEALERAHL----KDAI 863
LRK +G++ Q P +F ++ N+ + +A + + L++ L KD +
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
++N+L L S GQ+Q L ++RAL + K+L+LDE T+A+D + +I++ +
Sbjct: 137 KQNALAL-----------SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 924 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+E + +M+++ H + D G ++E+ +E N
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASAV 181
+ + ++NL I G + ++G +G GKT+ LI GE+ +SD V
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 182 -IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPGG 234
+R + YV Q +F + TV +NI L G ++ R +K D +L L G
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG--WDKERIKKRAD------ELLDLVGL 123
Query: 235 DVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR---QVFDRCIR 290
D +E +R + +SGGQ+QRV +ARA+ ++ + + D+P ALD + R Q + ++
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQ 182
Query: 291 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGK 347
EL GKT V VT+ + L DRI ++ G + + T +++ N + + G+
Sbjct: 183 KEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF---GE 238
Query: 348 MEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRK----TKEGKSVL--IKQEERE 401
E + D A+G L + D G+SVL + ++ R
Sbjct: 239 SERGLRLLSLVSVADAVRRGEPADG--EPLLEGFVDRDALSDFLARGRSVLPVVDEDGRP 296
Query: 402 TGVVSFKVL 410
G V+ L
Sbjct: 297 LGTVTRADL 305
|
Length = 309 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 125 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 184
Y S+ + L +I++ G++ IVG +G GK++LI ++ L ++ S +I G
Sbjct: 10 SYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDG 64
Query: 185 T-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 231
+ V Q +F TV+DNI +G + EK +DV ++ L ++
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDV---EYYLSIV 118
Query: 232 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
G E R V N+SGG+ QRVS+AR + +N +V + D+P SALD ++ + I
Sbjct: 119 --GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIV 175
Query: 291 GELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG-TFEDLSNNGELFQKLMENA 345
+L K + V H + Q RI +++G++ E T++ +N KL
Sbjct: 176 -KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ- 233
Query: 346 GKMEEYVE 353
GK++E V+
Sbjct: 234 GKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-13
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 738 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796
+P + VL R + +SFT+ + +GI G GAG++ + LF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 797 LERGRILIDGFDIA--------KFGLM---DLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845
G IL+DG + K G+ + RK G++ + + T+ +L FS
Sbjct: 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRR 369
Query: 846 SDADLWEALERAHLKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902
+ ERA + IRR + + + S G +Q + L+R L K+L
Sbjct: 370 GL--IDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVL 423
Query: 903 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR-VLEY 959
+LDE T +DV A I + IRE +L+I+ L ++ DRIL++ GR V E
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 960 DTPE 963
D E
Sbjct: 484 DREE 487
|
Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAV--I 182
P L NINL I G + I+G G GK++L + G L P D S + I
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 183 RGTVAYV---PQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDV 236
R V V P+ ++ TV +++ FG P K +D +
Sbjct: 76 RKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRA-------------L 121
Query: 237 TEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
EIG +SGGQ Q V++A + + IFD+ S LD G V +R +
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 291 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
GKT V +T+ L L DRII++ G + EG E++
Sbjct: 182 LHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDIAK--FG 813
+ G+ + ++G +G+GKS+ L +L R+ +++ R G+IL G DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
+ ++RK +G++ Q P F+ ++ N LD E S A LW+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + +++L L S GQ+Q L ++RA+ + IL++DE +A+D +
Sbjct: 152 -QVKDDLHKSALTL-----------SGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
+++T+ E K+ T++I+ H + D G ++EYD + +N
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLV 301
++SGGQ+QRV++ARA+ +V +FD+P SALD + +V + +L+ G+T V+V
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVV 208
Query: 302 TNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
T+++ F V +I +H+G ++EEG E + N
Sbjct: 209 THEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+F +V Y P LH +S I + + + G +GAGK+++L L+ + RG++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 804 IDGFDIAKF---GLMDLRKILGIIPQ-----------SPVLFSGTVRFNLDPFSEHSDAD 849
I G D+ + L LR+ +G++ Q V VR + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
+ H DA E S G++Q ++++RA++ +L+ DE T
Sbjct: 121 ALRQVGLEHKADAF--------------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 910 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDSGR 955
+D I ++ K T +I+A +++D R+++LD GR
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+LH LS T P G++G G+GKS++L L R G IL+D + + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 820 ILGIIPQS-PVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 876
+ +PQ P TVR + + H + A +R +++AI + +GL
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLAHR 143
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREEFKSCTM 932
++ S G+RQ ++ + + S+ L+LDE T+A+D V AL+ + +E + T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTV 201
Query: 933 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ + H +N CD ++ L G ++ TP EL+ E
Sbjct: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-13
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 740 SSGSIKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797
S S K + EL P +L +S ++P ++G TG+GKS++L +L E+
Sbjct: 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712
Query: 798 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 857
GR+ + + + +PQ + + TVR N+ F E A L +A+ +
Sbjct: 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
L+ + + GL+ ++ E G N S GQ+ +SL+RA+ + +LD+ +A+D
Sbjct: 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 918 LI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956
+ ++ T ++ H+++ + D ++ L GRV
Sbjct: 820 RVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 189
R L +++ IP G V + G +G GK++L+ + GE P + + R +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 190 P----QVSWIF-------NATVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLL 231
P Q+ +F + TV +N+ P + +D+ L+H L
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
P +SGG++QRV++ARA+ + V + D+P LD + ++
Sbjct: 135 P-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 292 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGMV 322
G T ++ T+ L ++++ R++ + +G +
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVP----QVSW 194
++LDI G ++G +G GKT+L+ ++ + ++ G + +P V+
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPVNT 76
Query: 195 IF-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-I 246
+F + TV +NI FG + KA + LDL+ + R + +
Sbjct: 77 VFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLV---QLEGYANRKPSQL 131
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--QVFDRCIRGELSGKTRVLVT-N 303
SGGQ+QRV++ARA+ + V + D+PL ALD + + Q+ + ++ EL G T V VT +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHD 190
Query: 304 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
Q L+ DRI ++++G +++ GT E++
Sbjct: 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
I DV + +R L SFT+P +VG G+GKS++ L V L
Sbjct: 3 QQAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 800 GRILIDGFDIAKFGLMDLRK-ILGIIPQS-------PVLFSGTV---RFN----LDPFSE 844
G+I I G + L+K ++ +PQS PVL V R+ L +
Sbjct: 62 GKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117
Query: 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904
+ AL R + + R Q+ E S GQ++ + L+RA+ ++ ++++L
Sbjct: 118 RDRQIVTAALARVDMVEFRHR-------QIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 905 DEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957
DE VDV+T+A I +RE + TML+ H L ++ + CD +++ G VL
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
Length = 272 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
SI+ + Y + L +SF VG +G GAGKS+ + + + + G +
Sbjct: 2 SIRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 861
+ G D+ + ++++ +G +P+ +P+ VR L F A ++ ++ LK
Sbjct: 60 QVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQ-FI----AGIY-GMKGQLLKQ 112
Query: 862 AIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
+ +GL + + S G RQ + L++AL+ K+L+LDE T +D I
Sbjct: 113 RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172
Query: 920 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 965
+ I+ K T+++ H + + CDR+++++ G+++ +EL
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 73/303 (24%)
Query: 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
I ++N ++ K E L N++++I G +AI+G TG GKT+ I + L P D
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--D 60
Query: 178 ASAV--------------------------------------IRGTVAYVPQVS--WIFN 197
+ IR V V Q + +F
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 198 ATVRDNILFGS---------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248
T+ +I+FG A + A K I++ L D L +SG
Sbjct: 121 QTIEKDIIFGPVSMGVSKEEAKKRAA--KYIELVGL--DESYLQ--------RSPFELSG 168
Query: 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQL- 305
GQK+RV++A + D +FD+P + LD +++ + I L GKT +LVT+ L
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLD 226
Query: 306 HFLSQVDRIILVHEG-MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDN 363
+ L R I +G ++K+ T++ LS+N L + ME K+ +V + ++ G V
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP-KLLNFVNKLEKKGIDVPK 285
Query: 364 KTS 366
TS
Sbjct: 286 VTS 288
|
Length = 305 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF---- 831
++G +G GK+++L L + + G I++DG D+ LR I ++ QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHI-NMVFQSYALFPHMT 58
Query: 832 -SGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886
V F L P +E + EAL L++ R L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTII 943
Q ++L+RAL+ + KIL+LDE +A+D + +Q KTI+E+ + + + +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 944 DCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
DRI ++ G++ + TPEE+ + F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 744 IKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796
++ DV YR PVL +S +I + VG++GR+G GKS++ L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 797 LERGRILIDGFDIAKF---GLMDLRKILGIIPQ---SPVLFSGTVRFNL-DPFSEHSDAD 849
+G + G D+ + R+ + ++ Q S V TVR + +P + D
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 850 LWEALER-AHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEA 907
E R A L D + GL ++ ++ S GQ Q ++++RAL + K++VLDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 908 TAAVDVRTDALI---QKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963
+ +D+ A+I + +++ F L I H L + C R+ ++D G+++E
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
Query: 964 ELLS 967
+LLS
Sbjct: 237 QLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 189
L +++L I G + + G +G GKT+L+ + G L P V R +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 190 P----QVSWIF-------NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLL 231
P ++ +F + TV +N+ R A+ L+H D
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
P +SGG++QRV++ARA+ ++ + + D+P LD + ++ D R
Sbjct: 135 PE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 292 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGM 321
G T ++ T+ L + +V R+I++ +G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 64/242 (26%)
Query: 120 ISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG----- 170
+++RN ++ SK +INLDI G V VG +G GK++L+ + G
Sbjct: 4 VTLRNVTKAYGDVVISK-------DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56
Query: 171 ------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA----- 213
++PP ++ + A P +S V +N+ FG A
Sbjct: 57 SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEEI 110
Query: 214 --RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
R + +V L H LD P +SGGQ+QRV++ R + + VF+ D+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 272 PLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKE 324
PLS LDA + Q +R E+S G+T + VT +Q+ ++ D+I+++ G V +
Sbjct: 160 PLSNLDAALRVQ-----MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 325 EG 326
G
Sbjct: 215 VG 216
|
Length = 369 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 54/257 (21%)
Query: 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---ML 169
T +PAI +R+ + K L +INLDIP + A++G +G GK++L+ M
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 170 GELPPVSDASAV----------------IRGTVAYVPQVSWIFNATVRDNILFG------ 207
+P V +R V V Q F ++ DN+ +G
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 208 -SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 262
E ++ +L + L + + +SGGQ+QR+ +ARA+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAV 166
Query: 263 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILV 317
+V + D+P SALD + + I EL K T V+VT H + Q D
Sbjct: 167 KPEVLLMDEPTSALDP-ISTLKIEELIT-ELKKKYTIVIVT---HNMQQAARVSDYTAFF 221
Query: 318 HEGMVKEEGTFEDLSNN 334
+ G + E G + + N
Sbjct: 222 YLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------PPVSDAS 179
S A R L ++LD+ G ++AI+G G GK++L+ A+ GEL P++
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 180 AVIRGTV-AYVPQVSWI-FNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLP 232
A +PQ S + F TV++ + G S EP E+ DL L
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 233 GGDVTEIGERGVNISGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFD 286
G D +SGG++QRV +AR + D+P SALD
Sbjct: 130 GRDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL- 181
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 330
R R VL LH L+ DRI+L+H+G V G+ +D
Sbjct: 182 RLARQLAREGGAVLAV--LHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----IRGTVAYVPQVSWIFN 197
+L++ G +VAI+G +G GK++L++ + G + P S + V G Y VS +F
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 198 A-------TVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243
TVR NI G +A + + A + LD LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK--TRVLV 301
+SGGQ+QRV++AR + + + + D+P SALD + R+ ++ S + T ++V
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL-REEMLALVKQLCSERQRTLLMV 185
Query: 302 TNQLHFLSQV-DRIILVHEGMVKEEG 326
T+ L + +I +V +G +K
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 7e-13
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 813
++ +S I ++G +G GKS+ L ++ R+ +L G IL +G +I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
+++LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---- 152
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + ++L L S GQ+Q L ++R L + +L+LDE +A+D ++
Sbjct: 153 -EVKDRLHSSALSL-----------SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
A I++ I E + +++I+ H + + DR +G ++EYD E++ ++
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+ LSFT+ + + I G GAGK+++L L ++ + G + G I +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQV 874
+L + Q + T NL + + A +WEAL + L D V
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPV 128
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934
S GQ++ ++L+R L + + +LDE A+D AL+ + +++
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 935 IAHRLNTIIDCDRILLLD 952
+ I +I LD
Sbjct: 185 LTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 813
L ++ I + +G +G GKS++L T R+ EL G IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 814 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWE----ALERAHL----KD 861
+ LR +G++ Q P F + + F + F + S A++ E AL +A L KD
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ ++ L S GQ+Q L ++R + R ++L+LDE +A+D + I++
Sbjct: 149 KLHQSGYSL-----------SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 922 TIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
I E + T++I+ H + C D + G ++E+ + + +
Sbjct: 198 LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-13
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAML----GEL----PPVSDASAV--- 181
L NI+L+I G +V I+G +G GK++L I+ + G+L V+D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 182 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
IR V Q ++F + T +N++FG P R A + + +LL ++G
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL-----AKVG 125
Query: 241 --ERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
ER +SGGQ+QRV++ARA+ + +FD+P SALD + +V + ++ +L+
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQ-DLA 183
Query: 295 --GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
G T V+VT+++ F +V R+I + +G + E+G + L N
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-13
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 48/237 (20%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-----LID--------- 805
VLHG+ + P + V I+G +G+GK+++L + + + E G I ID
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 806 ----------GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 855
GF F L R +L I + PV+ G + + A
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK------------EEATARA 125
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
R L +GL + + S GQ+Q ++++RAL R ++++ DE T+A+D
Sbjct: 126 RELLA------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 916 DALIQKTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+ TIR +E + TM+I+ H ++ D DR + +D GR++E + L ++
Sbjct: 180 VGEVLNTIRQLAQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 41/218 (18%)
Query: 776 IVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI-AKF-GLMDLRKILGIIPQSP 828
I+G +G GKS+ L + R+ +L G ++ DG DI KF + LRK +G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 829 VLFSGTVRFN---------------LDPFSEHS--DADLWEALERAHLKDAIRRNSLGLD 871
F ++ N L+ E S A LW+ + D + +N+LGL
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-----EVSDRLDKNALGL- 183
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 931
S GQ+Q L ++R L +IL+LDE T+A+D + A I+ I+E S T
Sbjct: 184 ----------SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 932 MLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
++I+ H + D + G ++E+ +L +N
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 129 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAY 188
++ L ++NL I G + AI+G +G GK++L++ ++G L + G
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETP 63
Query: 189 VP-----------QVSWIF-------NATVRDNILFGSAFEP---ARYEKAIDVTSLQHD 227
++ ++F N TV +N+ G ++ + +
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
L+L + E+ SGG++QRV++ARA+ + + D+P +LD +V D
Sbjct: 124 LNLKLKQKIYEL-------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD- 175
Query: 288 CIRGEL--SGKTRVLVTNQLHFLSQVDRII 315
+ EL GKT ++VT+ Q DR+I
Sbjct: 176 -LLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
++ RNG+ + L + + +P GS+ A+VG G GK++L A++G + S
Sbjct: 14 VTWRNGHTA---------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 180 AVI---------RGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPARYE 216
+++ + VAYVPQ V W F V D ++ G +
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 217 KA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273
A +D+ +H +IGE +SGGQK+RV +ARA+ V + D+P
Sbjct: 125 AALARVDMVEFRH----------RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 274 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 305
+ +D ++ R +R E GKT ++ T+ L
Sbjct: 171 TGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 187
+++L + G ++AI+G +G GKT+L+ A+ G + S I + VA
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 188 YVPQVS-WIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
YV Q + TVR+ + + + K L DL L G G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GN 139
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----VGRQVFDRCIRGELSGKT 297
ISGG+++RVS+A + + V I D+P S LD+ + + R +
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI---- 195
Query: 298 RVLVTNQLH-----FLSQVDRIILVHEG 320
V++T +H DRI+L+ G
Sbjct: 196 -VILT--IHQPRSDLFRLFDRILLLSSG 220
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 181
+ L +++L I G VA++G +G GK++L+ + G + P S + +
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 182 --IRGTVAYVPQ-VSWIFNATVRDNILFGSA------------FEPARYEKAIDVTSLQH 226
+R + + Q + I +V +N+L G F ++A+
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL------A 127
Query: 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
L+ + G + + +R +SGGQ+QRV++ARA+ + + D+P+++LD RQV D
Sbjct: 128 ALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 287 --RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDL 331
+ I E G T ++ +Q+ DRI+ + +G + +G +L
Sbjct: 186 LLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 199
++ I G + +VG +G GK++L +LG P S G + +F
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-------GEI--------LFEG- 74
Query: 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMAR 258
+D R + ++ L E R + +SGGQ+QR+ +AR
Sbjct: 75 -KDITKLSKEERRERVLELLEKVGLP-----------EEFLYRYPHELSGGQRQRIGIAR 122
Query: 259 AVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRII 315
A+ N + + D+P+SALD V Q+ + + ++ EL G T + +++ L + + DRI
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIA 181
Query: 316 LVHEGMVKEEGTFEDLSNN 334
+++ G + E G E++ +N
Sbjct: 182 VMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----TVAYVPQVSWIF 196
+L +P G +VAI+G +G GK++L++ + G P S +I G + VS +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLF 77
Query: 197 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
+ TV NI G +A + + E A L L LPG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------- 128
Query: 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ----VFDRCIRGELSGKTR 298
+SGGQ+QRV++AR + + + D+P SALD + + V C T
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE---RKMTL 183
Query: 299 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
++VT+ +++ DR++ + G + +G+ ++L
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAV 181
++ L +I+L + G + +G G GKT+ + +LG + P S + A+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 182 IR-GTVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVT 237
R G + P + N T R+N+ + R ++ +DV L+ G
Sbjct: 72 RRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG--- 126
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297
S G KQR+ +A A+ N D+ I D+P + LD +++ + + G T
Sbjct: 127 --------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 298 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326
++ ++ L + +V DRI ++++G + EEG
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 179
+ L ++L + GSLV +VG G GKT+L+ A+ G L P V S
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 180 AVIRG-TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKA--IDVTSLQHDLDLLPGGD 235
A VA VPQ S F VR + G +R++ D +++ ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 236 VTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
V + +R V ++SGG++QRV +ARA+ + V + D+P ++LD + + + R
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 295 GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331
GKT V + L ++ D ++L+ +G V+ G D+
Sbjct: 189 GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 702 ASLAENSLNAVERVGNYIEL--PSEAPLVIESNRPPPGWPSSGS-IKFEDVVLRYRPELP 758
A A++ + +E++ + P E + PPPG ++FE+V Y
Sbjct: 277 AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGR 335
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+L LSF I D++ IVG GAGKS++L L + G + K G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------KVGE---T 384
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDA--DLWEALERAHLKDAIRRNSLGLDA-QVS 875
+G Q + + E S+ D E RA+L G
Sbjct: 385 VKIGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGR------FGFTGEDQE 434
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 935
+ S G++ L L++ LL+ +L+LDE T +D+ + +++ + +F+ T+L++
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLV 492
Query: 936 AH-R--LNTIIDCDRILLLDSGRVLEYD 960
+H R L+ + RI L++ +V E++
Sbjct: 493 SHDRYFLDRV--ATRIWLVE-DKVEEFE 517
|
Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 183
+++LD+ G + I+G +G GK++L+ + + P S + + R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 184 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 235
++ V Q + + TV +N+ FG A R +A+++ L+ P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 293
+SGG +QRV +ARA+ + D+ + D+ SALD + R++ D +R EL
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 294 SGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 334
KT V +T H L + DRI ++ +G + + GT E++ N
Sbjct: 211 -QKTIVFIT---HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 806
D+ RY+ E PVL GL+ S G+VG G GKS++ L ++ ++G +L G
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 807 -FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA--I 863
D +K GL+ LR+ + + Q P F D+D+ +L + +A
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 864 RR--NSLGL-DAQ--VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
RR +L L DAQ + + S GQ++ ++++ AL+ +++ L+LDE TA +D
Sbjct: 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 919 IQKTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+ IR +II +H ++ I + D + +L G++L + P E+ +
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181
E + ++N + G AIVG TG GK++LI + L P + V
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 182 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID-VTSLQHDLDLLPGG 234
+R + V Q S +F TV I+FG P ++ +D V + H L + G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 293
+ + +SGGQ +++++ + N D+ + D+P + LD RQV +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 294 SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 336
KT +LV++ ++ +++ D +I++ EG + + + ++L + +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 817
L ++ IP IVG+ G GKSS+L + ++ G++ + ++
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 818 ---RKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
R + Q P L + TV N+ PF++ + +A L+ I G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDA---CSLQPDIDLLPFGDQ 131
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFK-- 928
++ E G N S GQRQ + ++RAL + + I+ LD+ +A+D+ +D L+Q+ I + +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 929 SCTMLIIAHRLNTIIDCDRILLLDSG 954
T++++ H+L + D I+ + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 162 TSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFG 207
++L+ + G L P S + ++R + V Q +F TVR+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 208 SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265
+ AR E+A++ L LD P G +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 266 VFIFDDPLS 274
+ + D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 182
L +NL +P + AI G +G GKTSLI+A+ G P + DA I
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 183 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+ + YV Q + +F + VR N+ +G + A+++K + + ++ LD PG
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG------- 127
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
++SGG+KQRV++ RA+ + ++ + D+PL++LD
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193
R ++ + G + + G G GKT+L+ + G LPP + GT+
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDI 66
Query: 194 WIF------------NA-----TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPG 233
NA TV +N+ F +AF E A++ L L P
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PF 125
Query: 234 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 293
G +S GQK+RV++AR + SN ++I D+P +ALDA +F IR L
Sbjct: 126 G----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHL 174
Query: 294 SG 295
+
Sbjct: 175 AQ 176
|
Length = 207 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
L G+SFTI + VG +G GAGK++ L L +++ G + + G K LR
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 819 KILGIIPQS-------PVLFSGTVR---FNLDPFSEHSDAD-LWEALERAHLKDAIRRNS 867
+I + Q PV+ S + ++L P D L E L+ L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------- 146
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927
LD V S+GQR ++ ALL +IL LDE T +DV I+ ++E
Sbjct: 147 --LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 928 K--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960
+ T+L+ +H + I R+L++D GR+L YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFD 808
L +L G++ TI + ++G G+GKS++ T+ E+ G IL G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 809 IAKFGLMDLRKILGII--PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 866
I + R LGI Q P G V+ D +R
Sbjct: 66 ITDL-PPEERARLGIFLAFQYPPEIPG-VK----------------------NADFLR-- 99
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926
E FS G+++ + + LL + +LDE + +D+ L+ + I +
Sbjct: 100 ---------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NK 149
Query: 927 FKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLE 958
+ ++LII H RL I DR+ +L GR+++
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
+IK +D+ Y + G+S I + I+G +G GKS+ + TL RI ELE G +
Sbjct: 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 803 LIDGFDIAKFG---------LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDAD 849
++G + FG + LR+ +G++ Q P F + V + + ++ AD
Sbjct: 64 KVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 850 LWEALERA--------HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901
L E +E A +KD + +++LGL S GQ+Q L ++RAL + K+
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGL-----------SGGQQQRLCIARALAIKPKV 171
Query: 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRV-- 956
L++DE +A+D +++ I T+ I+ H + + D D R+
Sbjct: 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231
Query: 957 -LEYDTPEELLSN 968
+E+ ++ SN
Sbjct: 232 MVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-12
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 47/229 (20%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 186
+++ + G + ++G G GKT+L + + G L P S + R +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 187 AYVPQVSWIF-NATVRDNILFG--------------SAFEPARYEKA---IDVTSLQHDL 228
Q+ +F TV +N++ E E+A ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
D G +S GQ++R+ +ARA+ ++ + + D+P + L +
Sbjct: 138 DRPAG-----------ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAEL 185
Query: 289 IRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
IR EL G T +LV + + + + DR+ ++ +G V EGT +++ NN
Sbjct: 186 IR-ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 4e-12
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 199
++L + G + A++G G GK++L+ + G P S G +
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-------GEI------------- 57
Query: 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVS 255
++ G A A G+ + S G++Q V
Sbjct: 58 ----LVDGKEVSFASPRDARR---------------------AGIAMVYQLSVGERQMVE 92
Query: 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-- 311
+ARA+ N+ + I D+P +AL ++F IR L G + ++ H L +V
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKV-IR-RLRAQGVAVIFIS---HRLDEVFE 147
Query: 312 --DRIILVHEGMV 322
DR+ ++ +G V
Sbjct: 148 IADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E+V Y + L G+S I + ++G +G GK+++L + G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAH 858
+DG DI L ++ + + Q+ LF + F L L +A +
Sbjct: 59 LDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGL------RLKKLPKAEIKER 110
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
+ +A+ + L+ + S GQ+Q ++++RAL+ K+L+LDE A+D++
Sbjct: 111 VAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 919 IQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 971
++K ++ E K T + + H + + DRI +++ G++ + TPEE+ +
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
Query: 972 SF 973
F
Sbjct: 225 RF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+ GLSFT+ + + + G G+GK+++L + ++ G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQVS 875
LG ++ + + TV NL+ W A E + A+ ++GL
Sbjct: 76 HYLG--HRNAMKPALTVAENLE---------FWAAFLGGEELDIAAAL--EAVGLAPLAH 122
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 935
S GQ++ ++L+R L+ I +LDE TAA+D AL + IR ++I
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 936 A 936
A
Sbjct: 183 A 183
|
Length = 207 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ + + Y E P +H T + IVG +G+GKS++LN + + GR+L
Sbjct: 1 VRLDKIRFSYG-EQP--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
I+G D+ D + + ++ Q LF+ TV N+ S A +R ++ A
Sbjct: 57 INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG--LGLSPGLKLTAEDRQAIEVA 112
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 918
+ R +GL S G+RQ ++L+R L+R +L+LDE AA+D +R + L
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRV 956
+ E T+L++ H+ R++ LD+GR+
Sbjct: 171 VLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+K D+ Y LP + T+ ++V I+G +GAGKS++LN + + G +
Sbjct: 2 LKLTDITWLYH-HLP--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN----LDPFSEHSDADLWEALERAH 858
++G D R+ + ++ Q LFS TV N L+P + + A +R
Sbjct: 58 LNGQDHTT--TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA------QREK 109
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD 916
L R+ +G++ ++ S GQRQ ++L+R L+R IL+LDE +A+D +R +
Sbjct: 110 LHAIARQ--MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 917 --ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI----LLLDSGRVLEYDTP-EELLSNE 969
L+ + +E + T+L+++H L D RI L++ GR+ +D P +ELLS +
Sbjct: 168 MLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIA-WDGPTDELLSGK 221
Query: 970 GS 971
S
Sbjct: 222 AS 223
|
Length = 232 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 818
LH +S I + V ++G GAGK+++L TL GRI+ DG DI + +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSE 876
+ + I+P+ +FS TV NL ++ D + E ++ + + R + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY--ELFPRL---HERRIQR 134
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI---REEFKSCTML 933
AG S G++Q+L++ RAL+ + ++L+LDE + + I TI RE+ T+
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIF 191
Query: 934 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
++ N + DR +L++G V+ DT + LL+NE
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 4e-12
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 32/244 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 799
IK E++ L Y + L +S IP + ++G +G GKS+ + L R+ +L +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 800 -GRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 856
G++ I+G DI + + ++LRK +G++ Q P F P S + + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 857 AHLKD--AIRRNSLGLDAQVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEA 907
A+ KD + N+L A E + + S GQ+Q L ++R L + KI++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEE 964
T+A+D + A I+ I K T++I+ H + I D L+ G ++E+ +
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQ 239
Query: 965 LLSN 968
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------R 183
R L +++L I G LV ++G +G GKT+L++ + G + P S S + R
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER 76
Query: 184 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
G V A +P W+ V DN+ FG EKA L L+
Sbjct: 77 GVVFQNEALLP---WL---NVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEH- 127
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTR 298
+ +SGG +QRV +ARA+ + + D+P ALDA Q+ + + + +GK
Sbjct: 128 -KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 299 VLVTNQLH---FLSQVDRIIL 316
+L+T+ + FL+ R+++
Sbjct: 187 LLITHDIEEALFLA--TRLVV 205
|
Length = 259 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-12
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IR 183
RP + +N+ + A +G G GKT+ +S + G LPP S V +R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 184 GTVAYVPQVSWIFN-ATVRDNILF-----GSAFEPAR--YEKAIDVTSLQHDLDLLPGGD 235
++ PQ + +F+ TV ++ILF G ++E A+ E ++ T L H +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------ 1056
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
E ++SGG ++++S+A A ++ V + D+P S +D + R ++D ++ SG
Sbjct: 1057 -----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG 1110
Query: 296 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 327
+T ++ T+ + + DRI ++ +G + GT
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 813
L+ +S P++ ++G +G+GKS++L ++ R+ +L G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 814 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERA--------HLKD 861
+DLRK +G++ Q P F + V + L L EA+E++ +KD
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ ++LGL S GQ+Q + ++R L KI++LDE T+A+D + I++
Sbjct: 141 RLHDSALGL-----------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 922 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
T+ TML++ + DR G ++EY+ +++ N
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 812
V+ G+ IP + ++G +G GKS++L T R++EL G + + G +I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 813 GLMDLRKILGIIPQSPVLFSGT---------VRFN--LDPFSEHSDADLWEALERAHLKD 861
+++R+ +G++ Q P F V+ N + E + W AL++A L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWD 137
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
++ ++++ N S GQRQ L ++RAL + KIL++DE TA +D A I++
Sbjct: 138 EVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 922 TIREEFKSCTMLIIAH 937
+ E K T++++ H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 7e-12
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAMLGELPPVSDASAVI 182
+ +L I G + I+G +G GK++ + + + PV + V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVR 69
Query: 183 RGTVAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVT 237
R + V Q +F + T+ N G E R EKA L+LL +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA---------LELLKLVGLE 120
Query: 238 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-G 295
E R + +SGG +QRV +ARA+ + D+ + D+ SALD + + D + + +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 296 KTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
KT V +T+ L + DRI+++ G + + GT +++ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-12
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-G 813
VL +S P ++G TG+GK++ L TL R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 814 LMDLRKILGIIPQSPVLF---------SGTVRFNLDPFSEH--------SDADLWEALER 856
+++ R+ +G++ Q P F +G L P E ++ LW+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
KD ++S++ S GQ+QLL L+R L ++L+LDE T+A+D T
Sbjct: 154 ---KD-----------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I++ IR T++I+ H L DR L GR++E E+L S+
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 813
L +S IP + ++G +G GKS+ L + R+ ++ R G + G ++ A
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 867
+ LR+ +G++ Q P F ++ N + + D + E+L RA L D ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927
Q+ +G + S GQ+Q L ++RA+ +++++DE +A+D + I+ I E
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 928 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 968
+ T++I+ H + I + L G ++E+D +++ N
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 813
L ++ I ++ I+G +G GKS+ + TL R+VEL G+IL +I +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
+ +LR +G++ Q P F ++ N LD E S A +W+
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---- 155
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
LKD + N+ GL S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 156 -ELKDRLHDNAYGL-----------SGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+++ ++E K +++I+ H + D+ +G V EYD +++ SN
Sbjct: 204 LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 31/160 (19%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-----------V 186
L N++L++ G I+G TG GK+ L+ + G + P S ++ G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 187 AYVPQVSWIF-NATVRDNILFG----SAFEPARYEKAIDVTSL---QHDLDLLPGGDVTE 238
+YVPQ +F + TV NI +G + K +++ + H L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+SGG++QRV++ARA+ N + + D+P SALD
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DASA 180
L IN+ I G V +VG +G GK++L+ + E P S A
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 181 VIRGTVAYVPQVS-WIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 230
+R + V Q + + V +N+ F A E R A+++ L H
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF--ALEVTGVPPREIRKRVPAALELVGLSHKHRA 132
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
LP +SGG++QRV++ARA+ ++ + I D+P LD ++ + +
Sbjct: 133 LPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 291 GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMV 322
+G T V+ T H VD R+I + G +
Sbjct: 182 INKAGTTVVVAT---HAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----------PVSDASAVIR 183
+P L +INL + G L+ ++G +G GKT+L++ + G +P PV A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-R 72
Query: 184 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
G V +P W V+DN+ FG + A EK + L + +
Sbjct: 73 GVVFQNEGLLP---W---RNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKV---GLEGA 121
Query: 240 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+R + +SGGQ+QRV +ARA+ +N + + D+P ALDA
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 812
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 813 GLMDLRKILGIIPQSPVLFSG-TVRFNL--DPF------SEHSDADLWEALERAHLKDAI 863
+ DLR+ +G++ Q L+ TV+ NL P + + A + L+R LK
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A I I
Sbjct: 136 DRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 924 RE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958
+E T +I+ H + R++ +++G ++E
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 813
LH +S + ++G +G GKS+ L L R+ +L G IL+DG +I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 814 LMDLRKILGIIPQSPVLFSGTV--------RFN-------LDPFSEHS--DADLWEALER 856
+++LR+ +G++ Q P F ++ R N L E S A LW+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD---- 137
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + ++LGL S GQ+Q L ++RAL ++L++DE +A+D
Sbjct: 138 -EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
I++ I E T++I+ H + D G+++E E++ +
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 111 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170
P+ P I ++N + + L +++ + G AIVG G GKT+L+S + G
Sbjct: 23 HPIEINEPLIELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
Query: 171 ELPPVSDASAV-------------IRGTVAYV-PQVSWIF--NATVRDNILFGSAFEPAR 214
E PP S + +R + V ++ F TVRD +L G
Sbjct: 80 EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPL 273
Y++ + L LL + +R ++S G+++RV +ARA+ + ++ I D+P
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 274 SALD 277
LD
Sbjct: 200 QGLD 203
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 1e-11
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 706 ENSLNAVERVGNYIELPSEAPLVIES--NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 763
E +L E + +E P + +S R PG +K ++V + P P +
Sbjct: 891 ERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVK--NLVKIFEPSGRPAVDR 948
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
L+ T + +G GAGK++ L+ L ++ G +L+ G DI + L +R+ LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883
PQ +LF F WE A L+ GL + +E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI- 942
G ++ LS++ A + +K++VLDE T+ VD + I + + T+++ H ++
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124
Query: 943 IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
+ DRI ++ GR+ TP L + G+ F
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 748 DVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806
+ VL R + + +SF + + VGI G G G++ + LF + G I +DG
Sbjct: 2 EPVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61
Query: 807 FDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864
+ + D + GI +P+ +R +
Sbjct: 62 KPVTRRSPRDAIR-AGIAYVPE----------------------------DR-------K 85
Query: 865 RNSLGLDAQVSEAGENFSVGQR------QLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
R L LD V EN ++ Q + L+R L R ++L+LDE T VDV A
Sbjct: 86 REGLVLDLSV---AENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 919 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 956
I + IRE + +L+I+ L+ ++ CDRIL++ GR+
Sbjct: 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSML------NTLFRIVELERGRILIDGFDI--AKF 812
L+ ++ I + ++G +G GKS+ L N L V++E G +L+DG +I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDAD--LWEALERAHL----K 860
+++LRK +G++ Q P F ++ N + + + D + AL++A L K
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D +++++L L S GQ+Q L ++R + + ++++DE T+A+D + I+
Sbjct: 139 DDLKKSALKL-----------SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 921 KTIREEFKSCTMLIIAHRL---NTIIDCDRILLLDSGRVLEYDTPEELLSN 968
+ E K T++I+ H + + + D L+ G ++E++ E++
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI-AKFGL 814
L ++ IP ++G +G GKS++L L R+ +L G ++ +DG DI +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 815 MDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALERA 857
DLR +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD----- 133
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
+KD ++ ++ GL S GQ+Q L ++R + ++++DE T+A+D
Sbjct: 134 EVKDRLKSHAFGL-----------SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182
Query: 918 LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I++ + E K+ T++I+ H + DR G ++E+D + + SN
Sbjct: 183 KIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMD 816
+L G++ T+ + I+G G+GKS++ T+ E+ G IL G D+ + D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPD 72
Query: 817 LRKILGII--PQSPVLFSG--TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN--SLGL 870
R G+ Q P G + F + A E L+ ++ LG+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 871 DAQVSEAGEN--FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL------IQKT 922
D + N FS G+++ + + L K+ +LDE + +D+ DAL I +
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI--DALKIVAEGINR- 189
Query: 923 IREEFKSCTMLIIAH--RLNTIIDCDRILLLDSGRVLE 958
+RE +S LII H RL I D + +L GR+++
Sbjct: 190 LREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI 182
++A R L +++ + G V ++G TG GK++L+SA+L GE+ VS S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 183 ---RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
R +PQ +IF+ T R N+ + K + L+ ++ P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 299
+ G +S G KQ + +AR++ S + + + D+P + LD V Q+ + ++ S T +
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVI 1406
Query: 300 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE 359
L +++ L + + +++ VK+ + + L N LF++ M A +++ + + +
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 360 TVDNKTSKPAANGVDNDLPKEASDTR 385
+ +P + + +E +TR
Sbjct: 1467 ---KRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 2e-11
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------------VSDASAVIR 183
++L + G + A++G G GK++L+ + G PP DA A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA--A 83
Query: 184 GTVAYVPQ-VSWIFNATVRDNILFGSAFEP-------------ARYEKAIDVTSLQHDLD 229
G +A V Q +S + N +V +NI G EP R + + L D D
Sbjct: 84 G-IATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
L G ++S Q+Q V +ARA+ ++ V I D+P +AL ++FD I
Sbjct: 141 TLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-I 188
Query: 290 RGEL--SGKTRVLVTNQLHFLSQV----DRII------LVHEGMVKEEGTFEDL 331
R L G + ++ H L +V DRI +V E + ++L
Sbjct: 189 R-RLKAQGVAIIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 186
L ++L + G + ++G G GKT+L+ + PP S + +R +
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 187 AYVPQ-VSWIFNATVR---DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
Y+PQ N TVR D I + + +D L+L+ ++ + ++
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-----LELV---NLGDRAKK 126
Query: 243 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVL 300
+ +SGG ++RV +A+A+ + + I D+P + LD R F R + EL + +L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF-RNLLSELGEDRIVIL 184
Query: 301 VTNQLHFLSQV----DRIILVHEGMVKEEG 326
T H + V +++ ++++G + EG
Sbjct: 185 ST---HIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181
E+ L N+N++I G V ++G TG GK++LI + G L P S +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 182 --IRGTVAYVPQVS--WIFNATVRDNILFG------SAFE-PARYEKAIDVTSLQHD--L 228
IR V V Q +F T+ +I FG S E R ++A+++ L ++
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
D P +SGGQK+RV++A V + I D+P + LD GR
Sbjct: 139 DKSP-----------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK-GRDEILNK 186
Query: 289 IRGELSGK---TRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
I+ EL + T +LV++ + +++ DRII++++G + +GT ++ E + +
Sbjct: 187 IK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
Length = 287 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 744 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
+K E++ RY+ VL G+S +I + V IVG +G+GKS++L+ L + G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 802 ILIDGFDIAKFG---LMDLR-KILGIIPQ---------------SPVLFSGTVRFNLDPF 842
+L +G ++K LR K LG I Q P+L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV------ 115
Query: 843 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902
+ + +E LE+ L+ I + + SE S G+RQ ++++RAL+ + ++
Sbjct: 116 -KEAKERAYEMLEKVGLEHRI-------NHRPSE----LSGGERQRVAIARALVNQPSLV 163
Query: 903 VLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
+ DE T +D +I + E + + L++ H L DR+L + G++
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 176
+ E L + L + G VAIVG +G GK++L++ + G P S
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
Query: 177 --DASAVIRG-TVAYVPQ-VSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQ 225
DA A +R V +V Q I N T +N+ SA A + ++ L
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG 137
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
L P +SGG++QRV++ARA DV D+P LD G ++
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 286 DRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325
D + L+ G T VLVT+ ++ DR + + G + E+
Sbjct: 187 D--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLM 815
+L G+ + + V IVG +G+GKS++L L + + G + + G + K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 816 DLR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER----AHLKDAIRRNS--- 867
LR + +G + QS F+L P ALE L+ +S
Sbjct: 84 ALRARHVGFVFQS---------FHLIPN--------LTALENVALPLELRGESSADSRAG 126
Query: 868 -------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----- 915
+GL +++ S G++Q ++L+RA R +L DE T +D T
Sbjct: 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 916 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
D L RE + T++++ H CDR L L SGR++E
Sbjct: 187 DLLFALN-RE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 173
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 174 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 219
P A +R V V Q ++ + TV+ N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA----PCRVLGLS 114
Query: 220 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 279 HVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 327
+ Q+ I EL+ G T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 47/230 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------------------------GELP 173
L +N + G VA++G +G GK++++ ++ G L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 174 PVSDAS-AVIRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYEKA----IDVTS 223
P + +R + V Q +F + TV DN+ A EK +D+
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
L D +P +SGGQ+QRV++ARA+ V +FD+ SALD + +
Sbjct: 136 LADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 284 VFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
V + R T +LVT+++ F + DR+ +G + E+G +++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 38/269 (14%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I ++N F + E+ TL +++ + G ++I+G G GK++ + + G L S
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 180 AV------------IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225
+ IR + V Q + ATV D++ FG + +E+ +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM--KERVN 122
Query: 226 HDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
L+L+ + + ER +SGGQKQRV++A AV + I D+ S LD GR
Sbjct: 123 EALELV---GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLE 178
Query: 285 FDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE------ 336
+ I+G + T + +T+ L ++ DR++++ G V+ T +L + G
Sbjct: 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLG 238
Query: 337 --------LFQKLMENAGKMEE-YVEEKE 356
L Q L +N + E Y+ EKE
Sbjct: 239 LDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-11
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTV----------AYVPQVSWI 195
G L+A++G +G GKT+L++A+ P S ++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 196 FNA-TVRDNILFGSAFE-PARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGV--NISG 248
TVR++++F + P R EK V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ--LH 306
G+++R++ A + ++ + D+P S LD+ + V GKT + +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 307 FLSQVDRIILVHEGMVKEEGT 327
D+IIL+ EG V G+
Sbjct: 230 LFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 182
R + ++L + G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMH 70
Query: 183 ---RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
R + Y+PQ + IF TV +NIL + E K L+ L+ +T
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF---HITH 125
Query: 239 IGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGELSGK 296
+ + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L +
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDR 182
Query: 297 -TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
VL+T N LS DR +++EG V EGT E+++ N
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193
E L +++ ++P G + ++G G GK++L+ + G PP S GTV +VS
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-------GTVTVRGRVS 86
Query: 194 WIF--------NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+ T R+NI E I + +E+
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII--------------EFSEL 132
Query: 240 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 294
G+ S G K R++ A A D+ + D+ L+ DA + R +R L
Sbjct: 133 GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR-LRELLKQ 191
Query: 295 GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326
GKT +LV++ + ++ DR +++ +G ++ +G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRI----LIDGFDIAKFGLMDL 817
L+F++ + +GIVG +G+GKS T F ++ L GRI +G +I +L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 818 RKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGL 870
K+ + +I Q P+ +L+P+ + L E L + +A + L
Sbjct: 92 NKLRAEQISMIFQDPMT-------SLNPYMRVGE-QLMEVLMLHKGMSKAEAFEESVRML 143
Query: 871 DA-QVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
DA ++ EA + FS G RQ + ++ ALL R K+L+ DE T A+DV A I
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 923 IRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+ E EF + +++I H L + CD++L++ +GR +EY ++
Sbjct: 204 LNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-11
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)
Query: 65 SLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN 124
SL+L LR PL + +++A V+ ++ + LA K P P + +RN
Sbjct: 269 SLTLL-FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRN 327
Query: 125 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML--GELPPVS-----D 177
F++ ++ INL I G L+ ++GG G GK++L AML G P S D
Sbjct: 328 VTFAYQ--DNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEILLD 383
Query: 178 ASAVIRGT-VAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLD 229
V Y S +F D LF G PA EK ++ + H L+
Sbjct: 384 GKPVTAEQPEDYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
L G ++ + +S GQK+R+++ A+ D+ + D+ + D H R+ F + +
Sbjct: 440 -LEDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVL 492
Query: 290 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
L GKT +++ H+ DR++ + G + E
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLI-----------SAMLGELPPVSDASA----VI 182
L NINL+I G VAI+G +G GK++L+ ++L E ++ +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 183 RGTVAYVPQ-VSWIFNATVRDNILFG------------SAFEPARYEKAIDVTSLQHDLD 229
R + + Q + I TV +N+L G F E+A+ L+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 287
+ G + +R +SGGQ+QRV++ARA+ D+ + D+P+++LD +QV D +
Sbjct: 132 RV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 288 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
I E G T V++ LH + DRI+ + G + +G +L + E+ + +
Sbjct: 190 RINKED-GIT-VIIN--LHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD--EVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 182
+R + +++L++ G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 183 ----RGTVAYVPQVSWIF-NATVRDNI-LFGSAFEPARY--EKAIDVTSLQHDLDLLPGG 234
R + Y+PQ + IF TV DNI E E+ ++ +L + +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGEL 293
D + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L
Sbjct: 134 D-----SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 294 SGK-TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
+ VL+T N L DR ++ +G V EG+ E++ NN
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825
+ + +G++G GAGK+++L + ++ +G + + G K + +G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 826 QS-------PVLFSGTVRFN----LDPFSEHSDAD---LWEALERAHLKDAIRRNSLGLD 871
Q P+ + TV + AD + +AL R L + R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 930
GE S GQRQ + ++RAL R +L+LDE +D+ T Q+ + E F
Sbjct: 110 ----PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELA 160
Query: 931 ----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966
+L+ H L + CDR++LL+ GRV+ TP++L
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI--AKFG 813
L+ ++ I + ++G +G GKS+ L TL R+ +L G ++ +G +I F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
+++LR+ +G++ Q+P F ++ N LD E S + LW
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN---- 138
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + N+L L S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 139 -EVKDKLNTNALSL-----------SGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I++ I +S T++I+ H + DR +G + E + +EL N
Sbjct: 187 GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 105/515 (20%), Positives = 196/515 (38%), Gaps = 41/515 (7%)
Query: 466 SLLSFGQV-LVTLANSYWLIISSLYAAKR----LHDAMLHSILRAPMVFFHTNPLGRIIN 520
SL SFG + L+ L I YA L A+ IL AP+ +I
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 521 RFAKDLGDIDR------NVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAIMPLLLLF 572
D+ I+ +A+ + +F ++ L LS + +S + + LL F
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA-QLLAF 173
Query: 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 632
+ ++ + E + T + + ++G+ R A+ + + D +I
Sbjct: 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR--RLSFAHGAIQESANNIADLHI 231
Query: 633 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 692
L+ + A + + ++ G ++ A FA + + A + LL Y
Sbjct: 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAIS-----AFVLALL--YIKGPL 284
Query: 693 SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP--SSGSIKFEDVV 750
+L + L + + A+ + + G P + +++ S SI+ +DV
Sbjct: 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV- 343
Query: 751 LRYRPELPP-----VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
P+ P L + I D V IVG G GKS++ + + G IL+D
Sbjct: 344 -HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 806 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 865
G ++ D R + I LF + + + +A + L+R + D ++
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY--LQRLEIADKVKI 460
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
G + S GQ++ L+L A L IL+ DE A D + +
Sbjct: 461 EDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 926 EFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
+ K T++II+H D+I+ L +G +++
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTV-------- 186
N+NL I G++V ++G +G GKT+++ + G P D V ++
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 187 ----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
A P +S + +N+ +G + K ++ L+L+ D+ +R
Sbjct: 84 FQSYALFPHMS------LGENVGYG--LKMLGVPKEERKQRVKEALELV---DLAGFEDR 132
Query: 243 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTR 298
V+ ISGGQ+QRV++ARA+ V +FD+PLS LDA++ R + ++ IR EL T
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK-IR-ELQQQFNITS 190
Query: 299 VLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ VT +Q + D +I++++G + + G+ ++L
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 816
+S P + I+G +G GKS++L ++ R+ +L G+IL+D DI G+ +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 817 LRKILGIIPQSPVLFSG-------TVRFNLDPFSEHSDAD--LWEALERAHL----KDAI 863
+R+ +G++ Q P F + L+ S+AD + +L+R L KD +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
+ N++ L S GQ+Q L ++R + + +++++DE +A+D + I++ I
Sbjct: 143 KSNAMEL-----------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 924 REEFKSCTMLIIAHRL 939
E + T++I+ H +
Sbjct: 192 EELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 7e-11
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I I + +++ +P L ++ I G V I G TG GK+SL A + + D
Sbjct: 20 IKIHDLCVRYENNL-KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGK 77
Query: 180 AVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
VI R ++ + Q +F+ ++R N+ R +A+++ L++
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
+ LPGG + E G N S GQ+Q +ARA S + I D+ +++D +
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQ 196
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ + + +T V + +++ + D ++++ G++ E T E+L
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 34/228 (14%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E+V R+ L L+ I + V ++G +G GK++ L + + E GRI
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL-KD 861
I G D+ D R I ++ Q+ L+ TV N+ F L+ + KD
Sbjct: 59 IGGRDVTDLPPKD-RDI-AMVFQNYALYPHMTVYDNI-AF----------GLKLRKVPKD 105
Query: 862 AIRR------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
I L ++ + + S GQRQ ++L RA++R K+ ++DE + +
Sbjct: 106 EIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL---- 161
Query: 916 DALIQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRV 956
DA ++ +R E K T + + H ++ + DRI +++ G++
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDG--FDIAKFGL 814
+L+ +S + + I+G +G+GK+++L+ + VE G+IL +G +F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 815 MDLRKILGIIPQSPVLFSG-TVRFNL---------DPFSEHSDADLWEALERAHLKDAIR 864
+K + + Q +L G TVR L S+ E + L
Sbjct: 80 ---QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
+L + S G+R+ +S++ LL K+L+LDE T+ +D T + T+
Sbjct: 137 GGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 925 EEFKSCTMLIIAHRLNTIIDC-------------DRILLLDSGRVL 957
+ +A R N I+ DRILLL SG ++
Sbjct: 188 Q---------LARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 7e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+ GLSFT+ + + + G G+GK+++L L + GR+L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 820 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
+L + + + +V NL + ++HSD + EAL R GL+
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV-----------GLNGFEDRPV 123
Query: 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936
S GQ++ ++L+R LL + +LDE T A+D A + + M+++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 816
+L G++ T+ + I+G G+GKS++ T+ E+ G IL DG DI +
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-----E 72
Query: 817 L------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--L 868
L R + + Q PV G V N D +A ++ + L
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 869 GLDAQVSE--AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL--IQKTIR 924
GLD + E E FS G+++ + + LL K+ +LDE + +D+ DAL + + I
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI--DALKIVAEGI- 187
Query: 925 EEFKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPE--ELLSNEG 970
+ +LII H RL I D++ +L GR+++ PE E L +G
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKG 239
|
Length = 251 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+ +SF +PP + G++G GAGK++ + ++E G I +G +++ +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 820 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
+G +P+ L+ TV L +E E + L+ + R L + + ++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI--QKKLQAWLER--LEIVGKKTKKI 128
Query: 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIREEFKSCTMLIIAH 937
+ S G +Q + A++ ++L+LDE + +D V + L + + T++ +H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970
R+ + + CDR+L+L G+ + Y T E++ + G
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 7e-11
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 812
VLH L+ I + +G +G GKS+ L L ++ +L G I G + K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLG 869
++LR +G++ Q P F ++ N+ ++ D + E + LK A + +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
D + +AG S GQ+Q L ++RA+ ++L++DE T+A+D A I++ I E K
Sbjct: 217 DD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274
Query: 930 CTMLIIAHRL 939
+++I+ H +
Sbjct: 275 YSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 51/251 (20%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I+I N S+ +K L +++LDIP G + +I+G G GK++L+S M L
Sbjct: 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGE 57
Query: 180 AVIRG-------------TVAYVPQVSWI-FNATVRDNILFGSAFEPARY---------- 215
I G ++ + Q + I TVRD + FG R+
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG------RFPYSQGRLTKE 111
Query: 216 -EKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPL 273
+ I+ ++ L + ++ +R ++ +SGGQ+QR +A + ++D + D+PL
Sbjct: 112 DRRIINEA-----IEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 274 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330
+ LD Q+ R + EL GKT V+V + ++F S D I+ + G V ++G+ ++
Sbjct: 164 NNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 331 L---SNNGELF 338
+ E++
Sbjct: 223 IIQPEILSEIY 233
|
Length = 252 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-11
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 202
+I G ++ I+G G GKT+ + + G + P + ++ V+Y PQ +S ++ TV D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVED 420
Query: 203 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVY 261
+ + + + T + L+L + ER V +SGG+ QRV++A A+
Sbjct: 421 ---LLRSAIRSAFGSSYFKTEIVKPLNLED------LLERPVDELSGGELQRVAIAAALS 471
Query: 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVH 318
+D+++ D+P + LD R + + IR E + KT ++V + ++ + V DR+I V
Sbjct: 472 READLYLLDEPSAYLDVE-QRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI-VF 529
Query: 319 EGMVKEEG 326
EG + G
Sbjct: 530 EGEPGKHG 537
|
Length = 591 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYV 189
+N + G + +G G GKT+ I + L P S + V +R ++ V
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV 71
Query: 190 PQ-VSWIFNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244
PQ S + T R+N+ + E+A + LL ++ E +R V
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE---------LLELFELGEAADRPV 122
Query: 245 -NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 303
SGG ++R+ +A ++ DV D+P + LD R ++D IR +L+T
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IRALKEEGVTILLTT 181
Query: 304 QLHFLSQV----DRIILVHEGMVKEEGTFEDL 331
H++ + DRI ++ G + EGT E+L
Sbjct: 182 --HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 109 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI-- 165
+ + I +RN F + A L NINLDI + A +G +G GK++L+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 166 ---------------SAML-GE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 207
+L GE L P D A++R V V Q F ++ DNI FG
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDI-ALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 208 -SAFEP-------ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMAR 258
FE R E A+ +L +++ D L + G ++SGGQ+QR+ +AR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIAR 169
Query: 259 AVYSNSDVFIFDDPLSALD 277
+ +V + D+P SALD
Sbjct: 170 GIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+ ++ S+D K + I+LD+ G + +VG +G GK++L+ M+ L ++
Sbjct: 3 GLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLERITSG 59
Query: 179 SAVIRGTV-----------AYVPQVSWIFN------ATVRDNILFG-------SAFEPAR 214
I G V A V Q N +VR+N+ +G A R
Sbjct: 60 EIWIGGRVVNELEPADRDIAMVFQ-----NYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
+A + L+ LD P R +SGGQ+QRV+M RA+ VF+FD+PLS
Sbjct: 115 VAEAARILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 275 ALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 327
LDA + Q +R E+ T + VT +Q+ ++ DR+++++ G+ ++ GT
Sbjct: 164 NLDAKLRVQ-----MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 812
+L G+S I S I+G +G GKS+ L L R+ ELE GR+ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 813 GLMDLRKILGIIPQSPVLFSGTV---------------RFNLDPFSEHS--DADLWEALE 855
L LR+ + ++ P LF +V + +D E + DADLW+
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD--- 138
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--- 912
+K I +++L L S GQ+Q L ++RAL + K+L++DE +D
Sbjct: 139 --EIKHKIHKSALDL-----------SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 913 -VRTDALIQK-TIREEFKSCTMLIIAHRLNTI 942
++ ++LIQ +R E TM+I++H L+ +
Sbjct: 186 SMKVESLIQSLRLRSEL---TMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188
++ + G + ++G G GKT+ I + L P S + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 189 VPQVSWIFNA-TVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 245
V Q + + T +N+ + + E+ + +LL + E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR------ERIDELLDFVGLLEAADRLVKT 131
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305
SGG ++R+ +AR++ +V D+P LD V++ + + +L+T
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-- 189
Query: 306 HFLSQV----DRIILVHEGMVKEEGTFEDL 331
H++ + DR+ ++ G + EGT E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG------- 170
I +N F + S A TL +++ +IP G +IVG G GK+++ M+G
Sbjct: 6 SIIVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 171 -----ELPPVSDASAVIR---GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID-V 221
D +R G V P ++ + V+ ++ FG Y++ V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 222 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
+ +D+L D +SGGQKQRV++A + N V I D+ S LD
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-A 177
Query: 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 338
RQ +R ++ + + + + H LS+ D +I++++G V +EGT ++ ++ E
Sbjct: 178 RQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
Query: 339 QKL 341
++
Sbjct: 237 TRI 239
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---F 807
L +R L +FT+P + G +G+GK+S++N + + + GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63
Query: 808 DIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIR 864
D K F + R+I G + Q LF TVR NL S RA +
Sbjct: 64 DAEKGIFLPPEKRRI-GYVFQDARLFPHYTVRGNLRYGMWKSM--------RAQFDQLVA 114
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--K 921
LG++ + S G++Q +++ RALL ++L++DE A++D+ R ++ +
Sbjct: 115 --LLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172
Query: 922 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+R+E +L ++H L+ ++ DR+++L++G+V EE+ +
Sbjct: 173 RLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQV 192
I+ + G + ++G G GKT+ I +LG + P S R + Y+P+
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
Query: 193 SWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGG 249
++ V D ++ + E + L+L +E + V +S G
Sbjct: 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKRVEELSKG 132
Query: 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHF 307
+Q+V AV + ++ I D+P S LD V ++ IR EL +GKT +L T+Q+
Sbjct: 133 NQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR-ELARAGKTVILSTHQMEL 190
Query: 308 LSQV-DRIILVHEG 320
+ ++ DR++L+++G
Sbjct: 191 VEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---------FDIAK 811
L+ LSF++ P + ++G GAGK+++++ + + G +L DG IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 812 FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN---- 866
G+ RK Q P +F TVR NL+ + + D ++ +L A L+ RR
Sbjct: 81 AGIG--RKF-----QKPTVFENLTVRENLE-LALNRDKSVFASL-FARLRAEERRRIDEL 131
Query: 867 --SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-- 922
++GL + S GQ+Q L + L + K+L+LDE A + TDA +KT
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM---TDAETEKTAE 188
Query: 923 -IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
++ ++L++ H + + + D++ +L G VL + +E+ ++
Sbjct: 189 LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/185 (24%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 820
IP ++G +G GKS++L +L R+ +L +GR+L DG D+ + +++R+
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 821 LGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874
+G++ Q P F ++ N+ + ++ D + +L +A + D + ++
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-------KL 148
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934
+E+G + S GQ+Q L ++R + +++++DE +A+D + I++T+ E K+ T++I
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
Query: 935 IAHRL 939
+ H +
Sbjct: 209 VTHNM 213
|
Length = 269 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 822
+SFT+ + I+G G+GKS++ L ++E G ILI+ + FG R K +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIR 90
Query: 823 IIPQSPVLFSGTVRFN--------LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 873
+I Q P N LD P ++D + + ++ + + +R L L
Sbjct: 91 MIFQDP-----NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ--IFETLRMVGL-LPDH 142
Query: 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCT 931
+ + GQ+Q ++L+RAL+ R KI++ DEA A++D +R+ + +E + +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 932 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQS 979
+ + + I D++L++ G V+E + ++L++ +K +++S
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 2e-10
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 812
+L ++ IP + ++G +G GKS+ + TL R+ +L G I +DG DI
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFNL------------DPFSEHSDADLWEALERAHLK 860
+++LRK +G++ Q P F ++ N+ D E + L A +K
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D + +++LGL S GQ+Q L ++R + +++++DE +A+D + I+
Sbjct: 138 DKLDKSALGL-----------SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 921 KTIREEFKSCTMLIIAHRL 939
I + + T++I+ H +
Sbjct: 187 DLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)
Query: 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------- 184
+ L NIN P S +A++G G GK++L G L P S S +IRG
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKEN 72
Query: 185 ------TVAYVPQVS--WIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLD 229
V V Q IF+ TV +I FG R A+ + L+ D
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
+P ++SGG+K+RV++A + V + D+P + LD +++ D
Sbjct: 133 RVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 290 R-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQK 340
E G T + T+QL + ++ D I ++ +G + GT E++ +L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI----DGFDIAKFG- 813
PVL +S T+ + V + G +GAGKS++L +L+ + GRIL+ D+A+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 814 --LMDLRK--------ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
++++R+ L +IP+ + +P E A RA ++ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPRE-AARARA--RELL 133
Query: 864 RRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
R L + ++ FS G++Q ++++R + IL+LDE TA++D ++ +
Sbjct: 134 AR--LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 923 IREEFKS-CTMLIIAH 937
I E ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 22/222 (9%)
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--M 815
++ + ++G +G GK++ L + R+ +L GRIL+DG DI + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG------ 869
+R+ +G++ Q P F F+ + + L +R HL + R+ G
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFD----NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
+ ++ S GQ+Q L ++RAL +IL++DE T+A+D + A I+ + + K
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 930 CTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSN 968
T++I+ H ++ + D L+ G ++E+ ++L +N
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLV--GDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820
L+ LS + P + I+G GAGK++M++ + + G +L G D+ + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG---LPEHQI 74
Query: 821 --LGIIP--QSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLG 869
GI Q P +F TV NL+ + D ++ +L L + ++G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIG 132
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT---IREE 926
L + S GQ+Q L + L++ K+L+LDE A + TD +KT ++
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSL 189
Query: 927 FKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNE 969
+++++ H + + I ++ +L G VL + +++ ++
Sbjct: 190 AGKHSVVVVEHDMEFVRSIAD-KVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMD-- 816
L+ +S+T + I+G +G+GKS+++ +++ + G I + I K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 817 -------------LRKILGIIPQSP--VLFSGTVRFNL--DPFSEHSDADLWEALERAHL 859
LR+ + ++ Q P LF T+ ++ P + L A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA------LGVKKSEAKK 154
Query: 860 KDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
N +GLD E S GQ++ ++++ L + +IL+ DE TA +D + +
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 919 IQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ + I + + T+ +I H + +++ D ++++D G++L+ TP E+ +++
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 109 PNPP-LTSGLPAI--SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 165
N L G P + ++ Y ER L ++L IP G VA+VG +G GK++L+
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
Query: 166 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR---YEKAIDVT 222
+ G P A ++ GT A R++ F+ AR ++K ID
Sbjct: 56 RLLAGLETP--SAGELLAGTAPL---------AEAREDTRL--MFQDARLLPWKKVIDNV 102
Query: 223 SL-------QHDLDLLPG-GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
L L L G E +SGGQKQRV++ARA+ + + D+PL
Sbjct: 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
Query: 275 ALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQ----VDRIILVHEGMV 322
ALDA + R I + G T +LVT H +S+ DR++L+ EG +
Sbjct: 163 ALDA-LTRIEMQDLIESLWQQHGFTVLLVT---HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 812
VL ++ P I+G +G GKS++L L R+ ++ G +L+D +I
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 813 GLMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALER----AHLKDAIR 864
+++LRK +G++ Q P F + V F + + L E +E+ A L D ++
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
N + ++G S GQ+Q L ++R L +++++DE +A+D + I++ ++
Sbjct: 139 DN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 925 EEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLS 967
E ++ T+ I+ H + D L +G ++EY E+ S
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
VL G+ FT+ + ++G GAGKS+++ + IV + G + I G A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 819 KILGI--IPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874
+ LGI +PQ P+LF +V+ N L + + +++ A L LD+
Sbjct: 85 Q-LGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----MQKMKQLLAALGCQLDLDSSA 138
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIRE-EFKSCTM 932
+ V RQ++ + R L+R S+IL+LDE TA++ T+ L + IRE + +
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 933 LIIAHRLNTIID-CDRILLLDSGRV 956
+ I+H+L I DRI ++ G +
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 762 HGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817
L+ ++ + + +VG +G+GKS ++L L + G IL+DG + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL--PLSIR 60
Query: 818 RKILGIIPQSPV-----LFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 866
+ + I Q+P LF+ T+R +L S+ + A + EALE L D
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLR-SLGKLSKQARALILEALEAVGLPDPEEV- 118
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 925
L + S G Q + ++ ALL L+ DE T +DV A + K +RE
Sbjct: 119 ---LKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 926 -EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+ +L+I H L + D + ++D GR++E T +E+ N ++ + S
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-10
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VEL 797
+I+ V R + + V++ +S I + + +VG +G+GKS ++ R+ V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 798 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSEHS-DADLWE 852
G I G + LR + G +I Q P++ +L+P H+ + L+E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 853 --ALERAHLKDAIRRNSLG-LD--------AQVSEAGENFSVGQRQLLSLSRALLRRSKI 901
+L R ++A R L LD ++++ S G+RQ + ++ ALL R ++
Sbjct: 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177
Query: 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLE 958
L+ DE T A+DV A I + +RE + M L I H L+ + DR+ ++ +GR +E
Sbjct: 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237
Query: 959 YDTPEELLS 967
+ L S
Sbjct: 238 QNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 119 AISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
+ ++ F++ DSK +P L +I+ IP GS A++G G GK+++ + G L P +
Sbjct: 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 178 ASAVI---------------RGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID 220
++ I R V V Q + ATV D++ FG + I
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 221 VTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
+ D+L + + I N+SGGQKQRV++A + + I D+ S LD
Sbjct: 123 IVR-----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 280 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 337
Q+ R ++ + + T + +T+ + + D+++++ +G + +G+ ++ + E+
Sbjct: 178 GKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 338 FQKL 341
+++
Sbjct: 237 LKEI 240
|
Length = 282 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGT----------V 186
L N++L +P G + ++G +G GK++LI + L E P + S ++ G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELT 78
Query: 187 AYVPQVSWIF-------NATVRDNILFGSAFEPARYEKA-IDVTSLQHDLDLLPGGDVTE 238
Q+ IF + TV N+ + ++ VT L L L+ GD +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL---LALVGLGDKHD 135
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGK 296
N+SGGQKQRV++ARA+ SN V + D+ SALD + + + + I L G
Sbjct: 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GL 192
Query: 297 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKM---EE 350
T +L+T+++ + ++ D + ++ G + E+GT ++ ++ L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 351 YVE 353
Y E
Sbjct: 253 YQE 255
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 183
+ +LD+ G + I+G +G GK++L+ + + P + + R
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 184 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 235
++ V Q + + TV +N+ FG A R +A+++ L+ D P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 294
+SGG +QRV +ARA+ ++ D+ + D+ SALD + ++ D + +
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 295 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
KT V +T+ L L DRI ++ +G + + GT E++ N
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-10
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 45/225 (20%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
V+ +SFT+ P + +G+VG +G+GKS+ L R++ +G I DG + + R+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL---NRRQ 356
Query: 820 ILGIIPQSPVLFSGTVRFNLDPFSE-----HSDADLWEALE--RAHLKDAIRR------- 865
+L + + V+F DP S + + E L + L A R
Sbjct: 357 LLPVRHRIQVVFQ-------DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 866 NSLGLDAQV-----SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+GLD + +E FS GQRQ ++++RAL+ + +++LDE T+++D +T +Q
Sbjct: 410 EEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD-KT---VQ 461
Query: 921 KTIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLE 958
I KS L I+H L+ + C ++++L G V+E
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-10
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 676 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNRP 734
A +G L+ ++T L R+ +L L+ V+ GN+ E E R
Sbjct: 378 KAADALGRLMLAGRDMTRLAGFTARVDTLL-QVLDDVKS-GNFKRPRVEEIESGREGGRN 435
Query: 735 PPGWPSSGS-------IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787
P G IKFE++ L P ++ LSF +P + + I G G GKSS+
Sbjct: 436 SNLVPGRGIVEYQDNGIKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 841
L + + GR+ + L +PQ P + GT+R + +
Sbjct: 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 842 FSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899
SD DL + L+ L + R G A V + + S G++Q ++++R +
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHILERE-GGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 938
+ +LDE T+AV V + + + RE T+ ++HR
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 28/185 (15%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 183
L +N G ++A++G G GK++L+ + G L P S A + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 184 GTVAYVPQ--VSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
V V Q +F A V ++ FG A E+ + + L +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTAVGASG 119
Query: 239 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297
+ ER + +SGG+K+RV++A AV DV + D+P + LD Q+ R G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 298 RVLVT 302
V+ T
Sbjct: 180 VVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 744 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
I F+ V RY+ + P L+ ++ +IP V I+G TG+GKS++L L +++ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 801 RILIDGFDIAKFG-----LMDLRKILGIIPQSP--VLFSGTVR----FNLDPF--SEHSD 847
+ I G + G L LRK +GI+ Q P LF TV F F SE
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119
Query: 848 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 906
+A ++A ++ I +GL ++ S GQ + ++++ L ++LVLDE
Sbjct: 120 ----DAKQKA--REMIEL--VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 907 ATAAVDVRTDALIQKTIREEF------KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959
TA +D + +K + E F K T +++ H + D+I+++ G V
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 960 DTPEELLSN 968
TP E+ ++
Sbjct: 228 GTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFG-- 813
L+ ++ +IP + ++G +G GKS++L R+ +L G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 856
++ LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD---- 137
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + ++L L S GQ+Q L ++R L +++++DE +A+D
Sbjct: 138 -EVKDRLHDSALSL-----------SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSNEG 970
A I+ I + K T++I+ H + + D + L G+++E+D ++ N
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 6e-10
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 188
+++ I G ++G G GK+++ +LG + P V + + R +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 189 VPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246
VPQ + TVR+N+L FG F + E + SL L DV R +
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----RVALL 136
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQL 305
SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GKT +L T
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTT--- 192
Query: 306 HFLSQVDRI 314
HF+ + +R+
Sbjct: 193 HFMEEAERL 201
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 184
L ++L I G +V ++G G GKT+L+ + G+ P + V G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMR 79
Query: 185 -TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
VA VP+ +F+ TV +N+ G F E ++++ I +L P I +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-Q 133
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 301
R +SGG++Q +++ RA+ S + + D+P L + +Q+FD + G T LV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 302 -TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
N L DR ++ G V E T + L N
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 51/236 (21%)
Query: 110 NPPLTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----- 163
+P +SG I R+ F D +A L ++++DIP + A++G +G GK++
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
Query: 164 -----LISA--MLGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFG-- 207
LI A + GEL V DA +R + V Q F ++ DN+ +G
Sbjct: 86 NRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145
Query: 208 ----SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259
R E+++ +L + LD G+++SGGQ+QR+ +ARA
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLD-----------SSGLDLSGGQQQRLCIARA 194
Query: 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 314
+ + +V + D+P SALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIED--LIEELAEEYTVVIVT---HNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQ-----VSW 194
++ + G + ++G G GKT+ + + G L P A + G V P + +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82
Query: 195 IFNA-------TVRDNILF--------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+ ++ T R+N+ + G AR E+ D ++ LD
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELT-ARLEELADRLGMEELLD---------- 131
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 297
R S G +Q+V++ARA+ + V + D+P + LD R + + R +R GK
Sbjct: 132 -RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKC 188
Query: 298 RVLVTNQLHFLSQV----DRIILVHEGMVKEEG 326
+ T H + +V DR++++H G V EG
Sbjct: 189 ILFST---HIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 8e-10
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 34/201 (16%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--------------VSDA--- 178
L++++L IP ++A +G +G GK++L+ + +L P + D+
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 179 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
S +R V V Q F ++ +NI AF P ++ L D L E
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENI----AFAPRANGYKGNLDELVED-SLRRAAIWEE 150
Query: 239 IG----ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
+ E+G +SGGQ+QR+ +ARA+ DV + D+P SALD RQV + C+ EL
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL--ELK 208
Query: 295 GK-TRVLVTNQLHFLSQVDRI 314
+ T ++VT H + Q R+
Sbjct: 209 EQYTIIMVT---HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-10
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAVIRGTV 186
+++L + G + A++G G GK++L+ + G P + IR +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 187 AYVPQ-VSWIFNATVRDNILFGSA------FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
V Q + TV +NI+ G + + I S ++ L + P V ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTR 298
S G++QRV + +A+Y + + I D+P + L ++F+ R GKT
Sbjct: 142 -------SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILRRLAAEGKTI 193
Query: 299 VLVTNQLH 306
+ +T++L
Sbjct: 194 IFITHKLK 201
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DAS 179
R L +++L + G +VAI+G G GK++L+ A+ GEL P S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 180 AVIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
A R A +PQ S + F TV + + G A P +A D + L + D+
Sbjct: 75 ARRR---AVLPQHSSLSFPFTVEEVVAMGRA--PHGLSRAEDDALVAAALAQV---DLAH 126
Query: 239 IGERGV-NISGGQKQRVSMARA---VYSNSD---VFIFDDPLSALD-AH---VGRQVFDR 287
+ R +SGG++QRV +AR ++ + D+P SALD AH V R
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 288 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 327
L+ V+V LH L+ DRI+L+H+G + +GT
Sbjct: 187 AHERGLA----VIVV--LHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP----------PVSDASAVIRGTVAY 188
++ + G ++G G GKT+ + +LG P PV + R V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 189 VPQVSWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246
VPQ + + TVR+N+L FG F + V L L D ++GE +
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGE----L 139
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQL 305
SGG K+R+++ARA+ ++ DV + D+P + LD +++R +R L GKT +L T
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTT--- 195
Query: 306 HFLSQVDRIILVHEGMVKEEG 326
HF+ + +R L V EEG
Sbjct: 196 HFMEEAER--LCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 815
L +S ++ + V ++G +G GK+ TL RI+ G I G DI + L
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIAGLERQTAGTIYQGGRDITR--LP 72
Query: 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAH-LKDAIRRNSLGLDAQ 873
++ GI+ QS LF TV N+ ++ E ER L D + GL
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGS 127
Query: 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----- 928
+ S GQ+Q ++L+RAL +L+LDE +A+ DA +++ +R E +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL----DARVREHLRTEIRQLQRR 183
Query: 929 -SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
T +++ H + + DRI++++ G + + TP+E+ + + F
Sbjct: 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-09
Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 59/326 (18%)
Query: 43 TVVSFGMFTLLGGDLTPARAFTSL-------SLFAVLRF--PLFMLPNMITQVVNANVSL 93
F L+G L A F S+ + A+L PL ML + + + A ++
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 94 KRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLN------------ 140
+R+ +F E+ P P S + + S DS + +N
Sbjct: 302 QRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 141 --INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQVS 193
I+L I G +V IVG G GK++L G P D +AV +
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD-- 416
Query: 194 WIFNATVRDNILFGSAFEPARYEKA--------IDVTSLQHDLDLLPGGDVTEIGERGVN 245
+F+A D LF P E A + + + + GG T
Sbjct: 417 -LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL------SGKTRV 299
+S GQ++R+++ A + + +FD+ + D F R EL GKT +
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDP-----AFKRFFYEELLPDLKRQGKTII 525
Query: 300 LVTNQLHFLSQVDRIILVHEGMVKEE 325
++++ + D+II + G + ++
Sbjct: 526 IISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP 174
+PAI + N F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-- 59
Query: 175 VSDASAVIRGTVAYVPQ---------------VSWI------FNATVRDNILFGSAFEPA 213
++ + G V + Q VS + F +V DN+ +G
Sbjct: 60 --ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 214 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
R + ID V S D DL +I + +++SGGQ+QR+ +ARA+ V + D+
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 272 PLSALDAHVGRQV----FDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314
P LD +V +R EL T V+V++ LH QV R+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHNLH---QVSRL 217
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
V++ LSFTI + G++G GAGKS++ L ++ +RG+I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL-ARV 77
Query: 820 ILGIIPQSPVL-FSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVS 875
+G++PQ L TVR NL F + S ++ + L + R S D +V+
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFARLESKA-DVRVA 134
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLI 934
S G ++ L+L+RAL+ ++L+LDE T +D LI + +R + T+L+
Sbjct: 135 L----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 935 IAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969
H RL CDR+ +L+SGR + P L+ +
Sbjct: 191 TTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 59/252 (23%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAM----LGELPPVSDASAV-------------IR 183
++L+I G +VA++G +G GK++L+ + G+ S + IR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 184 GTVAYVPQVSWIFNA----TVRDNILFG------------SAFEPARYEKAIDVTSLQHD 227
+ A + FN +V +N+L G S F + ++A+
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA------ 136
Query: 228 LDLLPGGDVTEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
+T +G +R +SGGQ+QRV++ARA+ + V + D+P+++LD
Sbjct: 137 --------LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 282 RQVFD--RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338
R V D R I + G T V+ +Q+ + L +RI+ + +G V +G+ + N E F
Sbjct: 189 RIVMDTLRDI-NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN--ERF 245
Query: 339 QKLMENAGKMEE 350
L + ++EE
Sbjct: 246 DHLYRSINRVEE 257
|
Length = 262 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 812
L +S IP + +G +G GKS++L R+ +L G I +DG +I K
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 813 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 855
+ +LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD--- 156
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
+KD + N+ GL S GQ+Q L ++RA+ ++L+LDE T+A+D +
Sbjct: 157 --EVKDRLHENAFGL-----------SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 916 DALIQKTIREEFKSCTMLIIAH 937
I++ I E T++I+ H
Sbjct: 204 TLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
++ +S T+P + G++G GAGKS++L + I+ G I+ DG + DL K
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHK 71
Query: 820 ILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGL 870
I G + +SP L+ T R NL P S + E L L + ++ +
Sbjct: 72 I-GSLIESPPLYENLTARENLKVHTTLLGLPDSR-----IDEVLNIVDLTNTGKKKA--- 122
Query: 871 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
+ FS+G +Q L ++ ALL K+L+LDE T +D
Sbjct: 123 --------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
PVL ++ I + + I G TG+GK+S+L + +E G+I G
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 877
+ Q + GT++ N+ F D ++++ +A L++ I + + + E
Sbjct: 100 --ISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 930
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE-------KEIFESCVCKLMAN 209
Query: 931 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
T +++ ++ + D+IL+L G Y T E L + FS
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFS 253
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA------------M 168
S++N + SK L +INLDI + A +G +G GK++ + +
Sbjct: 7 SVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 169 LGEL-----PPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEKAID 220
GEL S + V+ R V V Q F ++ DN+ +G A+ +K +D
Sbjct: 64 KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 221 VTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276
+ L G E+G+R +SGGQ+QR+ +ARA+ + + D+P SAL
Sbjct: 124 EIV---EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 277 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 332
D V V + I+ T ++VT H + Q DR+ G + E T +++
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVT---HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
Query: 333 NN 334
N
Sbjct: 237 KN 238
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 117 LPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGEL 172
P I I N + + KA + N+ + I + AI+G +G GKT+L I+ M +
Sbjct: 1 EPIIEIENFSAYYGEKKAVK----NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 173 P-----------------PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR- 214
P P D + R V V Q F ++ DN+ FG +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVT-EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 215 -------YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
E+++ +L ++ +E+ + G +SGGQ+QR+ +ARA+ +V
Sbjct: 116 KHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVI 168
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 314
+ D+P SALD + Q ++ + ELS T V+VT H + Q RI
Sbjct: 169 LLDEPTSALDP-IATQRIEKLLE-ELSENYTIVIVT---HNIGQAIRI 211
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 119 AISIRNGYFSW--DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176
I + + +F + +KA L ++L IP GS A++G G GK++L+ + G P
Sbjct: 4 IIEVEDLHFRYKDGTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 177 DASAV------------IRGTVAYVPQV--SWIFNATVRDNILFG------SAFE-PARY 215
V +R V V Q +F++TV D++ FG E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
E+A+ + D P ++S GQK+RV++A + + DV + D+P++
Sbjct: 120 EEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 276 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334
LD + + R GKT ++ T+ + ++ D++I++ EG V EG L++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD- 227
Query: 335 GELFQKLMENAG 346
+ ++E AG
Sbjct: 228 ----EDIVEQAG 235
|
Length = 274 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI-------- 182
E L NINLDI + AI+G +G GK++ I M+ +P V ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 183 --------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 234
R V V Q F ++ DN+ +G + +K +D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-------------- 141
Query: 235 DVTEIGERGVNI---------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
++ E RG I SGGQ+QR+ +AR + DV + D+P SALD
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 812
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 813 GLMDLRKILGIIPQS----PVLFSGTVRFNL----------DPFSEHSDADLWEALERAH 858
+ +LR+ +G++ Q P L TV+ NL + A+ + LER
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAE--KLLERLR 130
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
LK R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A
Sbjct: 131 LKPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 919 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
I IRE ++ T +I+ H + R++ +++G ++E S F+
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD--------ASCFT-- 229
Query: 977 VQSTGAANAQYL 988
Q A YL
Sbjct: 230 -QPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 114 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173
T+ P + R+ + L I+ + G + A++GG G GK++L+ + G +P
Sbjct: 6 TTAPPLLCARS---ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 174 PVSDASAVIRGTVAY---------------VPQVSWIF-NATVRDNILFGSAFEPARYEK 217
P D+ + G VPQ +F N +V++NILFG A +K
Sbjct: 63 P--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120
Query: 218 AID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276
+ +L LDL E+ +R Q V + R + +S + I D+P ++L
Sbjct: 121 MKQLLAALGCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASL 171
Query: 277 DAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
++F R IR L+ G V ++++L + Q+ DRI ++ +G + G DLS +
Sbjct: 172 TPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ------ 191
L +NL I G ++++G +G GK++L++ + G P + ++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 192 ------VSWIFNATVRDNILFG------SAFEPAR---YEKAIDVTSLQHDLDLLPGGDV 236
+ W+ TVR+NI + R E+ I + L D PG
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSG 295
+SGG KQRV++ARA+ V + D+P ALDA + + ++ E
Sbjct: 114 --------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 296 KTRVLVTNQLH---FLSQVDRIILVHEG 320
T ++VT+ + LS DR++++ G
Sbjct: 166 VTVLMVTHDVDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI------------ 182
L NINL IP + AI+G +G GK++ I M+ +P V +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 183 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
R + V Q F ++ DN+ +G + +K + + D+ +V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 239 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 296
+ + +++SGGQ+QR+ +ARA+ +N DV + D+P SALD R++ + + +L K
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL--KLKEKY 205
Query: 297 TRVLVTNQLHFLSQVDRI 314
T V+VT H + Q R+
Sbjct: 206 TIVIVT---HNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 48/237 (20%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 816
++ I P +G +G GKS++L TL R+ E+ G +L+DG D+ G+ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 817 LRKILGIIPQSPVLFS---------GTVRFN-------LDPFSEHS--DADLWEALERAH 858
+R+ +G++ Q P F ++ N LD E S A+LW
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
+KD + + GL S GQ+Q L ++RA+ +L++DE +A+D +
Sbjct: 138 VKDRLDKPGGGL-----------SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 919 IQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDS----GRVLEYDTPEELLSN 968
I+ I E + T++I+ H + + D L++ GR++E D E++ SN
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-09
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
PVL +SF + + + G TG+GKSS+L + +E G+I G
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 877
+ PQ+ + GT++ N+ F D + ++ +A L++ I + E
Sbjct: 489 --ISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 930
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE-------KEIFESCLCKLMSN 598
Query: 931 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977
T +++ +L + D+ILLL G Y T E L + FS ++
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDAS--AVIRGT 185
+L I G + I+G +G GK++++ + + P +SDA V R
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 186 VAYVPQ-VSWIFNATVRDNILFGSAFE--PA--RYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+A V Q + + + TV DN FG A R EKA+D Q L+ E+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPDEL- 165
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRV 299
SGG +QRV +ARA+ N D+ + D+ SALD + ++ D ++ + +T V
Sbjct: 166 ------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 300 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+++ L ++ DRI ++ G V + GT +++ NN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+ +SF + + VGI G G G+S ++ + + + GRIL++G D+ R
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 819 KILGI--IPQSP-----VLFSGTVRFNL-------DPFSEHSDADLWEALERAHLKDAIR 864
+ LG+ +P+ VL ++ NL PFS D A+ R ++ I
Sbjct: 332 RRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLD-RRAI-RKFARELIE 388
Query: 865 RNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ DA + S G +Q L L+R L RR +L+ + T +DV I +
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 922 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL-----EYDTPEEL 965
+ E + +L+I+ L+ I++ DRI ++ GR++ E T EE+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 179
S ++ + ++ + G ++G G GK+++ +LG P V +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 180 AVIRGTVAYVPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+ R + VPQ + TVR+N+L FG F + E + SL L D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 296
R ++SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GK
Sbjct: 169 ----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGK 223
Query: 297 TRVLVTNQLHFLSQVDRI 314
T +L T HF+ + +R+
Sbjct: 224 TILLTT---HFMEEAERL 238
|
Length = 340 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQV 192
R L +++ +I G + I G +G GK+SL A L L P + + ++PQ
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQR 72
Query: 193 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252
++ T+R+ +++ P DV +SGG++Q
Sbjct: 73 PYLPLGTLREQLIY-------------------------PWDDV---------LSGGEQQ 98
Query: 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 312
R++ AR + D+ SALD +++ + T + V ++ D
Sbjct: 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGI--TVISVGHRPSLWKFHD 155
Query: 313 RII-LVHEG 320
R++ L EG
Sbjct: 156 RVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
L +S TI + V ++G +G GK+++LN + V RG I ++G I G
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-- 76
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR---NSLGLDAQV 874
G++ Q+ L V N+ L+ ++ A RR + + +
Sbjct: 77 ---GVVFQNEALLPWLNVIDNVA-----------FGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 875 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930
A + S G RQ + ++RAL ++L+LDE A+D T +Q+ + + ++
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 931 --TMLIIAHRLN-TIIDCDRILLLDS--GRVLEYDTP 962
+L+I H + + R+++L GRV+E
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 813
L ++ +IP ++ I+G +G GKS+ + TL ++++ G + +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 814 LMDLRKILGII-------PQS--------PVLFSGTVRFNLDPFSEHS--DADLWEALER 856
L++LRK +G++ PQS P + + L E S D LW+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+KD + +L L S GQ+Q L ++RAL +L++DE T+A+D +
Sbjct: 144 -EVKDRLHTQALSL-----------SGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I++ I + + T++I+ H + D+ G ++E + ++ SN
Sbjct: 192 RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 813
L G+ ++ ++G +G GKS+ L TL R+ +L G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 867
++ LRK +G++ Q P F ++ N L + + D EA+E + + AI
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVETSLKQAAIWDE- 137
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927
+ + E+ + S GQ+Q + ++R L + +++LDE T+A+D + I+ + E
Sbjct: 138 --VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 928 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
T++++ H ++ D+ +G ++E+ +++ N
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 819
G++ + + +G+VG +G GKS+ + +V+ G + G D+ +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 820 ILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLG---LD 871
+ +I Q P L S R + +P + L R +KD ++ L L
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 927
++ FS GQ Q + ++RAL+ K+++ DE +A+DV A L+Q+ RE
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 928 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
S ++ IAH L + I DR+L++ G +E T +E+ N ++K + S
Sbjct: 213 LS--LIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263
|
Length = 331 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 109 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 167
S IS++N S+ +A + N+ DIP G + A++G +G GK++++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVK----NVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 168 ---MLGELPPVSDASAVI-RGTVAYVPQVSWI---------------FNATVRDNILFGS 208
M + S V+ GT Y P+V + F ++ +NI FG
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG- 117
Query: 209 AFEPARYEKAIDVTSLQHDLDLLPGGDVTE----------IGERGVNISGGQKQRVSMAR 258
AR + D+D L + + + E G ++SGGQ+QR+ +AR
Sbjct: 118 ----AR------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 259 AVYSNSDVFIFDDPLSALD 277
+ +V + D+P SALD
Sbjct: 168 TIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
VL +S + P + ++G GAGKS+++ + +V + G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 820 ILGIIPQS----PVLFSGTVRF-NLDPFSEHSDADLWEALER---AHLKDAIRRNSLGLD 871
+G +PQ L RF L P ++ D+ AL+R HL DA
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDA--------- 116
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 927
+ S G+ Q + L+RALL R ++LVLDE T VDV LI + +R E
Sbjct: 117 -----PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL 170
Query: 928 KSCTMLIIAHRLNTII-DCDRILLLD 952
C +L+++H L+ ++ D +L L+
Sbjct: 171 -DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDASAV 181
+ L NI+ + G I G +G GK+ SLIS G L +S
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 182 I-RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTE 238
I R V+Y Q +F TV DN++F + D DL+ LP
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALP----DT 129
Query: 239 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
I + + +SGG+KQR+S+ R + V + D+ SALD V +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------- 174
Y S + E+ L ++NL++ G + I+G G GK+++ M L P
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 175 VSDASAV--IRGTVAYVPQV--SWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHD 227
SD + IR V Q + I V +++ FG P + +D
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVD------- 126
Query: 228 LDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
+ L + E + +SGGQKQRV++A + + IFD+P + LD R+V +
Sbjct: 127 -ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185
Query: 287 RCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
I+ + G T +L+T+ + + DRII++ G V EGT +++ E+ +K+
Sbjct: 186 -TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
Length = 280 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 743 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
+I+F++V Y+ P +H ++ IVG+TG+GKS+++ + +++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 800 GRILIDGFDIA-----KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWE 852
G + +D I K+ + +RK +G++ Q P LF TV + ++ +L E
Sbjct: 62 GTVTVDDITITHKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 853 ALERAH---LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
AH + R+ + S++ S GQ + +++ L I+VLDE TA
Sbjct: 121 VKNYAHRLLMDLGFSRDVM------SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 910 AVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964
+D ++ L++ +E K T+++++H +N + D ++++ G ++ +P+E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENK--TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 965 LLS 967
L
Sbjct: 233 LFK 235
|
Length = 286 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNA 198
++ ++P G+ + I G G GK+SL +LGEL PV +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN----------ISG 248
T+RD I++ + E + + + L+ LD + +T I ER +SG
Sbjct: 530 TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSG 585
Query: 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
G+KQR++MAR Y I D+ SA+ V ++ C
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-09
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
+S TI + ++G +G GKS++L L + G+I++DG D++ + ++ + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINM 95
Query: 824 IPQSPVLFSG-TVRFNLDPFSEHSD--------ADLWEALERAHLKDAIRRNSLGLDAQV 874
+ QS LF TV N+ F D + + E L H+++ +R L
Sbjct: 96 MFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 932
S GQRQ ++L+R+L +R K+L+LDE A+D + +Q + + E T
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 933 LIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
+++ H + + RI +++ G+ ++ PEE+ + + +S
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 7e-09
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 744 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
IKFE V Y+P P L + + ++G TG+GKS++L L +++ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 801 RILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEAL 854
++ + ++ + +RK +G++ Q P LF TV ++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 855 ERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
E+A A + +GL + E S GQ + ++++ L ++LVLDE TA +D
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 914 RTDALIQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN--- 968
+ + + +S T++++ H ++ + D D + LL+ G ++ TP ++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 969 ---------EGSSFSKMVQSTG 981
+ + F+ +Q TG
Sbjct: 238 LKAHELGVPKATHFADQLQKTG 259
|
Length = 288 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 56/269 (20%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGR 801
I+ +++ ++ + VL +SFTI + +GI+GR+GAGKS +++ L + + E GR
Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 802 IL---------------------------------IDGFDIAKFGLMDLRKILGIIPQSP 828
I+ +D ++++ +RK + I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 829 VLFSGTVRFNLDPFSEHSDADLWEALERAHL--KDAIRR-----NSLGLDAQVSEAGENF 881
G LD ++ EALE K+A+ R + L +++ +
Sbjct: 119 FALYGDDTV-LD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169
Query: 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRL 939
S G++Q + L+R L + + + DE T +D +T L+ + E K+ +M++ +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 940 NTIID-CDRILLLDSGRVLEYDTPEELLS 967
I D D+ + L++G + E TP+E+++
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 818
L G++ TI + + ++G +G GKS++LN LI G G +++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-------------LISGLAQPTSGGVILEGK 47
Query: 819 KILGIIPQSPVLFSG-------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
+I P V+F TVR N+ + DL ++ RA +++ I +GL
Sbjct: 48 QITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI--ALVGLT 105
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 929
+ S G +Q ++++RAL R K+L+LDE A+D T +Q+ + + E
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 930 CTMLIIAHRLN-TIIDCDRILLLDS------GRVLEYDTP 962
T+L++ H ++ ++ DR+++L + G++LE P
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFP 205
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181
L +I+L++ GS A++G TG GK++L+ + G L P V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 182 IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+R V V Q S +F TV ++ FG EKA + + L+++ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA--EKLEMV--GLADEF 137
Query: 240 GERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 298
E+ +SGGQ +RV++A + +V + D+P + LD ++ SG+T
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197
Query: 299 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 331
VLVT H + V D + L+ +G + GT D+
Sbjct: 198 VLVT---HLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELER---GRILIDGFDIAKF--- 812
VL+ +S ++ + V ++GR+G GKS TL R+ V LE G + G +AK
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 813 GLMDLRKILGIIPQ---SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 869
R+ + ++ Q S V TVR + H L +A ER + R ++
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKA-ERLARASEMLR-AVD 139
Query: 870 LDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA-LIQ--KTIRE 925
LD V + S GQ Q + L+RAL K+L+LDEA + +D+ A +I+ K +++
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 926 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+F + L I H L + C R++++D+G+++E + L+ S +++Q+
Sbjct: 200 QFGT-ACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS-SPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
V L+ IP I+G G GKS++L TL R++ G + +DG I + ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 820 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADL---WEALERAHLKDAIRRNSLGLDAQVSE 876
+G++ Q+ L + L W + + A++ + G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ--ATGITHLADQ 139
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTM 932
+ + S GQRQ ++ L + + I++LDE T +D+ L+ + RE K T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTL 197
Query: 933 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ H LN ++ L G+++ P+E+++ E
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+FE V Y L G++F + P + + G +GAGKS++L + I G+I
Sbjct: 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 804 IDGFDIAKFGLMD---LRKILGIIPQS-PVLFSGTVRFNLD-PFSEHSDADLWEALERAH 858
G DI + + LR+ +G+I Q +L TV N+ P + A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGAS 110
Query: 859 LKDAIRRNSLGLD-AQVSEAGENFSV----GQRQLLSLSRALLRRSKILVLDEATAAVDV 913
D RR S LD + + +NF + G++Q + ++RA++ + +L+ DE T +D
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD- 169
Query: 914 RTDALIQKTIR--EEFK--SCTMLIIAHRLNTIIDCD-RILLLDSGRV 956
DAL + +R EEF T+L+ H + I R+L L G +
Sbjct: 170 --DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-09
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 191
ER L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPD 444
Query: 192 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG---GDVTEIGERGVN--- 245
+ V SA P YE ++ L G V + G++
Sbjct: 445 -----SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV 499
Query: 246 --------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS- 294
+S GQK+R +A+ + +V + D+ AH+ R R EL+
Sbjct: 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE----FAAHLDELTAVRVARKISELAR 555
Query: 295 --GKTRVLVTNQLHFLSQV--DRIILVHEGMVKEE 325
G T ++VT++ + + D +ILV G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
+ +R F+ + R NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 177 -----DASAVIRGTVAYV-PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTS 223
+ A+ R + V ++S +F + V DN+ + E + + ++
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHST 123
Query: 224 LQHDLDLLPGGDVTEIGERGV------NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+ L+ +G RG +SGG +R ++ARA+ D+ +FD+P D
Sbjct: 124 VMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 278 AHVGRQVFDRCIRGELS---GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSN 333
+ V + I EL+ G T V+V++ + LS D +V + + G+ + L
Sbjct: 176 P-ITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 334 N 334
N
Sbjct: 234 N 234
|
Length = 269 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 30 CNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNA 89
SF+ N+ P L+ V F ++ LLG +LTP F +++L VLR P FM+P + T V+
Sbjct: 471 ATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQF 530
Query: 90 NVSLKRMEEFL 100
VS+KR+ FL
Sbjct: 531 LVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 182 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLLPGGDVTE 238
+R + V Q +FN ++ +NI FG E A E +A ++ ++ LP T
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGK 296
+G G ++SGGQKQR+++ARA+ + + D+ S+LD++ ++ ++ I + + K
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-SEKLIEKTIVDIKDKADK 1410
Query: 297 TRVLVTNQLHFLSQVDRIILVHE-----GMVKEEGTFEDL 331
T + + +++ + + D+I++ + V+ GT E+L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450
|
Length = 1466 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 810
VL G+S D + I+G +G+GKS+ L + + + G I ++G +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 811 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERA-HLK 860
K L LR LG++ Q L+S TV N+ H S A EA+ERA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYL 137
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+ G+ + + S GQ+Q ++++RAL ++++ DE T+A+D +
Sbjct: 138 AKV-----GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 921 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971
K ++ EE + TM+++ H + D ++ L G++ E PE++ N S
Sbjct: 193 KVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 153 IVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSWIFNA-------TV 200
++G +G GKT+L+ +L S ++ G V VP ++ +F + TV
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 201 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARA 259
+N+ F + K L+ L + E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 260 VYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT-NQLHFLSQVDRIIL 316
+ + + D+PLSALD + Q+ + I+ +L G T V VT +Q ++ DRI +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAI 173
Query: 317 VHEGMVKEEGTFEDL 331
+ +G + + GT E++
Sbjct: 174 MRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181
E L ++NL I GS A +G TG GK++++ + G P + V
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 182 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 235
IR V V Q S +F TV ++ FG E+A +L + L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA---EALAREKLALVGIS 135
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
+ + +SGGQ +RV++A + + + D+P + LD +++ + SG
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 296 KTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 351
T VLVT H + V D + ++ +G + G +D +FQ + ++
Sbjct: 196 MTIVLVT---HLMDDVANYADFVYVLEKGKLVLSGKPKD------IFQDV--------DF 238
Query: 352 VEEKEDG 358
+EEK+ G
Sbjct: 239 LEEKQLG 245
|
Length = 280 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 185
+++L++ G +V ++G G GKT+L + + G P S + + RG
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLG 80
Query: 186 VAYVPQVSWIF-NATVRDNIL--------FGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 236
+A Q++ +F TV +N+ R K + + +LL +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVGL 139
Query: 237 TE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--EL 293
E N+S GQ++R+ +ARA+ + + + D+P + L+ ++ + IR +
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDR 198
Query: 294 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
G T +L+ + + + + DRI++++ G V EGT E++ NN
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQ 191
NI+ ++P G + ++G G GKT+ +LG L P S I+ + Y+P+
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79
Query: 192 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGG 249
++ TV D + + + E KA LQ L ++ + + +S G
Sbjct: 80 ERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQ---AWLERLEIVGKKTKKIKELSKG 134
Query: 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 309
+Q++ AV ++ I D+P S LD + D + G T + + H +
Sbjct: 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS---HRME 191
Query: 310 QV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-- 363
V DR++++ +G GT ED+ + GK +E E + N
Sbjct: 192 HVEELCDRLLMLKKGQTVLYGTVEDIRR----------SFGKKRLVIESDLSLEELANIP 241
Query: 364 --KTSKPAANGVDNDLPKEASDTRKTKE 389
+G + + R+ +
Sbjct: 242 GILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 37/223 (16%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA---VIR-----GTV 186
G +AI+G G GK++L + G + P S D S IR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 187 AYVP--QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244
+ P ++ I + +R N R ++ + + + LLP D
Sbjct: 99 SLNPRLRIGQILDFPLRLNT---DLEPEQRRKQIFETLRM---VGLLP--DHANYYPH-- 148
Query: 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 303
++ GQKQRV++ARA+ + I D+ L++LD + Q+ + + E G + + VT
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 304 QLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQKLME 343
+ + + D+++++HEG V E G+ D+ S EL ++L+E
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 775 GIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDIAKFGL--MDLRKILGIIPQS 827
G +G +G GKS++L +L R+ +L +G + G D+ G+ + +R+ +G++ Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 828 PVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881
P FS ++ N L+ + + AL+ A L D ++ ++ +G +
Sbjct: 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150
Query: 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941
S GQ+Q L ++RA+ ++L+LDE +A+D +++ + E K T+ ++ H +
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210
Query: 942 II 943
I
Sbjct: 211 AI 212
|
Length = 261 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-- 820
++ + + V ++G GAGK+++ N L + G IL+ G I GL +I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPG-HQIAR 79
Query: 821 LGIIP--QSPVLF-SGTVRFNL------------------DPFSEHSDADLWEALERAHL 859
+G++ Q LF TV NL P +++ EAL+RA
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES---EALDRA-- 134
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT---- 915
A +GL + N + GQ++ L ++R ++ + +IL+LDE A ++ +
Sbjct: 135 --ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 916 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
D LI + +R E T+L+I H + ++ DRI +++ G L TPEE+ +N
Sbjct: 193 DELIAE-LRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DG---FDIAKFGLMDL 817
H S I + ++G +G+GKS++L + + + RG +L+ DG D+A L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 818 RKI-----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 866
R++ ++P V V F L+ A E +R + +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVE--ENVAFGLE-MQGMPKA---ERRKRVDEQLEL--- 151
Query: 867 SLGLDA-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRT---DALI- 919
+GL + GE S G +Q + L+RA + IL++DE +A+D +RT D L+
Sbjct: 152 -VGLAQWADRKPGE-LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209
Query: 920 -QKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK-M 976
Q +++ T++ ++H L+ + +RI +++ GR++++ TPEE++ N + +
Sbjct: 210 LQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
Query: 977 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAA-AQYALAVSLTSS 1035
V T N R L+ K+ E WL ++ A L V+ ++
Sbjct: 265 VAHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAA 324
Query: 1036 HNDLQRLE 1043
+++ LE
Sbjct: 325 EQEVESLE 332
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 758 PPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815
PV L ++ T+ P + ++G GAGKS+++ L I E +G I I+ + K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 816 DLRKI-LGIIPQS-PVLFSGTVRFNLDPFSEHSDADLW--------EALERAHLKDAIRR 865
++ +GII Q V+ TV NL H + E RA A+
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRA----AMML 130
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDAL--IQKT 922
+GL + E N S+ +Q+L +++ L+ +K++++DE T+++ + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 923 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSG 954
+R+E + ++ I+H+L I CDR ++ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 817
VL G+S I + V IVG +G+GKS+++N L + + G + G D+A L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 818 --RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874
R+ G I Q L S T N++ + ++ + + L RA + ++R LGL+ +V
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQR--LGLEDRV 138
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA---LIQKTIREEFKSCT 931
S GQ+Q +S++RAL+ ++++ DE T A+D + I +R+ + T
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHT 196
Query: 932 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980
++I+ H +R++ + G E++ N + V
Sbjct: 197 VIIVTHDPQVAAQAERVIEIRDG---------EIVRNPPAQEKVNVAGG 236
|
Length = 648 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 66/277 (23%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWI 195
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 196 --------------------------------FNATVRDNILFGSAFEPARYEKAID--- 220
R I+ F + +D
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 221 ----------VTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVSMARAVYSNSDV 266
++ +DL+ ++ ++ R +I SGG+KQRV +AR + +
Sbjct: 133 EALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 267 FIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKE 324
F+ D+P LD + V + + SG + VL ++ + + D+ I + G +KE
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Query: 325 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV 361
EGT +++ ME E E E GE +
Sbjct: 250 EGTPDEVVA------VFMEGV-SEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 76/374 (20%)
Query: 612 RAYKAYDRMADINGKSMDKNI-RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 670
RA ++ + + + +I R ++ A W I + GL+ ++ + G
Sbjct: 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-----GW 259
Query: 671 AENQEAFASTMGLLLSYALNI----TSLLTAV-----LRLASLAENSLNAVERVGNYIEL 721
A+ A+T Y+L + T LL+AV L A +A N LN +
Sbjct: 260 ADTN--VAAT------YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA------ 305
Query: 722 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVG 778
P +A + P W + ++ +V Y+ + P+ + TI + + ++G
Sbjct: 306 PYKAEF--PRPQAFPDWQT---LELRNVTFAYQDNGFSVGPI----NLTIKRGELLFLIG 356
Query: 779 RTGAGKS--SMLNT-LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 835
G+GKS +ML T L++ G IL+DG + D RK+ + LF
Sbjct: 357 GNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 836 RFNLDPFSEHSDADLWEA-LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894
L P + ++ L E LER + + D ++S S GQ++ L+L A
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELE----DGRISNL--KLSKGQKKRLALLLA 463
Query: 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNTIID 944
L IL+LDE A D R EF T+ I+H + I
Sbjct: 464 LAEERDILLLDEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 945 CDRILLLDSGRVLE 958
DR+L + +G++ E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----PPVSD 177
E+ L +I + IP + A++G +G GK++L+ G++ + D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 178 ASA---VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 231
+ A +R + V Q F ++ +N+ +G + +K +D SL+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
D + + +++SGGQ+QR+ +AR + N +V + D+P SALD
Sbjct: 138 EVKD--RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
|
Length = 253 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-08
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806
E +R R VL L+ I P D V +VG++GAGK+ TL R++ G G
Sbjct: 385 ESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKT----TLLRMIL---GAQKGRG 437
Query: 807 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP--FSEH-----SDADLWEA-LERAH 858
+ + D K+ L G EH D + L RA
Sbjct: 438 EEKYR---PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAG 494
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
L DA+ S GQ++ L++ L R +L++DE A +D T
Sbjct: 495 LSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 919 IQKTIRE---EFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 958
+ + I E E T++++ HR + D ++L+ G+V
Sbjct: 546 VARKISELAREAGI-TLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL------------FRIVELERGRILIDGF 807
+L LS I P ++GR GAGKS++L L R+ G + ++G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV----TGDVTLNGE 71
Query: 808 DIAKFGLMDLRKILGIIPQS--PVL-FSGTVRFNLDPF--------SEHSDADL-WEALE 855
+A L ++ ++PQ+ P FS L + H D ++ W+AL
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 856 RAHLKDAIRRN----SLGLDAQVSEAGENFSVGQRQLLSL--SRALLRRSKILVLDEATA 909
A + R+ S G A+V A R L L + + L+LDE TA
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFA--------RVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 910 AVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELL 966
A+D+ + T+R + + L I H N DRI +L G ++ + P ++L
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
Query: 967 SNE 969
+
Sbjct: 244 TPA 246
|
Length = 272 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-08
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 105 KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTS 163
K P P G P IS + F + P L N+N I + S +A+VG G GK++
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGG---PLLFKNLNFGIDLDSRIAMVGPNGIGKST 550
Query: 164 LISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 222
++ + GEL P S GTV +V +F+ D + S
Sbjct: 551 ILKLISGELQPSS-------GTVFRSAKVRMAVFSQHHVDGLDLSS-------------N 590
Query: 223 SLQHDLDLLPGGDVTE------IGERGVN----------ISGGQKQRVSMARAVYSNSDV 266
L + + PG V E +G GV +SGGQK RV+ A+ + +
Sbjct: 591 PLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL-VTNQLHFLS-QVDRIILVHEGMVKE 324
+ D+P + LD + I+G + + VL V++ H +S VD + +V EG V
Sbjct: 649 LLLDEPSNHLDL----DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704
Query: 325 -EGTFED 330
GTF D
Sbjct: 705 FHGTFHD 711
|
Length = 718 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 182
R G +K P L N++L I G V ++G +G GK++L +LG P
Sbjct: 13 RTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ------ 65
Query: 183 RGTVAYVPQVSWIFN-----ATVRD-NILFG---SAFEPARYEKAIDVTSLQHDLDL--- 230
GTV++ Q + + A RD ++F SA P + I L+H L
Sbjct: 66 -GTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124
Query: 231 -----------LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
+ G + + +SGGQ QR+++ARA+ + + D+ +S LD
Sbjct: 125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 280 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 325
+ + + R ++ G + +T+ L + R+ ++ +G + EE
Sbjct: 185 LQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--VSDASAVIRGTVAYVP--- 190
L I+LD + A++G +G GK++ + + + +L P + +RG Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 191 ------QVSWIFNA------TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 235
QV +F ++ +N+++G + + +D TSL+ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
+ E +++SGGQ+QRV +AR + DV + D+P SALD Q+ + + EL
Sbjct: 141 --HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL--ELRD 196
Query: 296 K-TRVLVTNQLHFLSQVDRI 314
+ T +LVT H + Q RI
Sbjct: 197 QYTIILVT---HSMHQASRI 213
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---------- 189
N +LDI G + ++G +G GK++L+ A+ G L PVS S +++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 190 -----PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+VS +F TV +N+ FG E KA + L+L+ +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELV---GLA 155
Query: 238 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS 294
+ +R +SGG +QRV +ARA + + + + D+P SALD + Q+ D + +L
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 295 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDL 331
KT V V++ L L +RI ++ G + + GT E++
Sbjct: 216 -KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 813
L + IP +G +G GKS+ L L R+ ++ R G+I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 814 LMDLRKILGIIPQSPVLFSGTVRFNL--DPFSE---HSDADLWE----ALERAHLKDAIR 864
+++LR +G++ Q P F ++ N+ P S A+L E +L +A L + ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
++ E G S GQ+Q L ++RA+ +++++DE +A+D A +++ I
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 925 EEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 968
E ++ T++I+ H + R G ++E E++ +N
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%)
Query: 108 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 167
LPNP L + GY +R L +I L++ GS + ++G G GK++LI
Sbjct: 308 LPNPLLKME----KVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
Query: 168 MLGELPPVSDASAVIRGT-VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
+ GEL PVS + +G + Y Q F + + P E Q
Sbjct: 358 LAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE--------QK 409
Query: 227 DLDLLPG----GD-VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
D L G GD VTE R SGG+K R+ +A V+ ++ + D+P + LD +
Sbjct: 410 LRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM- 465
Query: 282 RQVFDRCI---RGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKE-EGTFED 330
RQ + G L V+V++ H L S D + LVH+G V+ +G ED
Sbjct: 466 RQALTEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED 514
|
Length = 638 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 709 LNAVERVG--NYIELPSEAPLVIESNRPPPGWPSSGS---------IKFEDVVLRYRPEL 757
L AV ++G ++ P PL I P P ++ ++V R+
Sbjct: 269 LAAVPQLGAMKGLDYPRRFPL-ISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRF---- 323
Query: 758 PPVLHGL--------------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
P+ GL SF + P + + +VG +G+GKS+ L R+VE + G I+
Sbjct: 324 -PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 804 IDGFDI---AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH-- 858
+G I + L LR+ + I Q P +LDP D+ + E L R H
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDS-IMEPL-RVHGL 433
Query: 859 -LKDAIRRNSLGLDAQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAA 910
A L +V E+ FS GQRQ + ++RAL K+++ DEA +A
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 911 VDVRTDALI 919
+DV I
Sbjct: 494 LDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 48/229 (20%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASA 180
+ L +++L +P G + A++G G GK++L+ L P S +S
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 181 VIRGTVAYVPQVSWIFNA-TVRDNILFG-----------SAFEPARYEKAIDVTSLQHDL 228
+ +A +PQ TVR+ + +G SA + AR +A++ T
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------ 126
Query: 229 DLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
+ + +R + ++SGGQ+QR +A + ++ V + D+P + LD + QV
Sbjct: 127 ------RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELM 178
Query: 288 CIRGELS--GKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 330
+ EL+ GKT V V LH L+Q D ++++ G V +GT E+
Sbjct: 179 RLMRELNTQGKTVVTV---LHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTV 186
ER +++ + G + I G G GKT+L+ + G L P + + +R +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 187 AYVPQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+ ++ + T +N+ F F + I + L D+ +
Sbjct: 74 H--QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--EALAQVGLAGLEDL-PV 128
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 299
G +S GQ++RV++AR S + ++I D+P +ALD G + + + V
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
Query: 300 LVT 302
L+T
Sbjct: 184 LLT 186
|
Length = 209 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 103 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEG 160
++K+ +PNP S + ++N Y +D K E L NI+ + I+G +G G
Sbjct: 7 KKKLKVPNP--LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSG 64
Query: 161 KTSLISAMLGELPP----------------------VSDASAVI------RGTVAYVPQV 192
K++L++ G + + S I R V+ V Q
Sbjct: 65 KSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124
Query: 193 S--WIFNATVRDNILFGS-AFEPARYEKA------IDVTSLQHD-LDLLPGGDVTEIGER 242
+F T+ +I+FG A + E ++ L L+ P G
Sbjct: 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-------- 176
Query: 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 302
+SGGQK+RV++A + ++ IFD+P + LD ++ + + + KT ++T
Sbjct: 177 ---LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233
Query: 303 NQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 340
+ + H L D +I++ +G + + GT ++ + +
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGELP-------------PVSD 177
E+ L +++LDIP ++ A +G +G GK++ ++ M + + D
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 178 AS---AVIRGTVAYVPQVSWIFNATVRDNILFGS---AFEPARYE-KAIDVTSLQHDLDL 230
+R V V Q F ++ +N+ +G ++ E I TSL+
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK---- 146
Query: 231 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
G E+ +R G +SGGQ+QR+ +ARA+ + +V + D+P SALD +V +
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-E 203
Query: 287 RCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
I EL T V+VT+ + ++V R H G + E G E + N
Sbjct: 204 ELID-ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 31/256 (12%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------------------AMLGEL 172
E L N +L + ++G TG GK+++I A L ++
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 173 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 232
V I G V P+ +F T+ +I FG ++A L LP
Sbjct: 83 KEVKRLRKEI-GLVFQFPEYQ-LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 233 GGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR- 290
+ +R +SGGQK+RV++A + + + + D+P LD + R
Sbjct: 141 ----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 291 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME 349
+ K ++VT+ + L D +I++HEG V G+ ++ +N EL K+ + K+
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLY 256
Query: 350 EYVEE-KEDGETVDNK 364
+ + + K G + NK
Sbjct: 257 QLMYKLKNKGIDLLNK 272
|
Length = 289 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181
E+ L NI+ ++ GS VA+VG TG GK++L+ L P S +
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78
Query: 182 ----IRGTVAYVPQV--SWIFNATVRDNILFG----SAFEPARYEKA---IDVTSLQHDL 228
+R V+ V Q + +F TV ++ FG E EKA + L DL
Sbjct: 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
I + +SGGQ +RV++A + ++ D+P + LD +++
Sbjct: 139 ----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 289 IRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVK 323
+ +G T +LVT+ + +++ D ++L H ++K
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR----- 183
E+ L ++L+I G V ++G G GK++L++A+ G+L P S D V +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 184 --GTVAYV---PQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQHDLDLLP 232
+A V P T+ +N+ A E+ S + L L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLG 135
Query: 233 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292
G + +R +SGGQ+Q +S+ A + + D+ +ALD V + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 293 LSGK-TRVLVTNQL-HFLSQVDRIILVHEGMV 322
K T ++VT+ + L +R+I++H G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP------- 190
L +++ + G L ++G G GKT+L+ + G+ P + + G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIA 79
Query: 191 --------QVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQH 226
Q +F N TVR+N+ +F S F E R ++ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
+ D L +S GQKQ + + + + + + D+P++ + + +
Sbjct: 140 ERDRLAA-----------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 287 RCIRGELSGKTRVLVTNQ-LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ L+GK +LV + F+ ++ D++ ++HEG V EG+ +++ N+
Sbjct: 189 --LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 820
IP + +G +G GKS++L R+ +L GR+L +I ++ + LR+
Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102
Query: 821 LGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSE 876
+G++ Q P F ++ N+ P + +L E +E D++RR ++ + ++ E
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVE-----DSLRRAAIWEEVKDKLKE 157
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936
G S GQ+Q L ++RA+ + +L++DE +A+D + +++ E + T++++
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 937 HRL 939
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 7e-08
Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 76/210 (36%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I + N ++ + L +I+L I G + +VG G GK++L+ + GEL P
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 180 AVIRG-TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
+ Y Q+S GG
Sbjct: 58 TWGSTVKIGYFEQLS---------------------------------------GG---- 74
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV-------FDRCIRG 291
+K R+++A+ + N ++ + D+P + LD + + +
Sbjct: 75 -----------EKMRLALAKLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEYPGTV-- 120
Query: 292 ELSGKTRVLVTNQLHFLSQV-DRIILVHEG 320
+LV++ +FL QV +II + +G
Sbjct: 121 -------ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 817
L G+SFT+ + +VG +G GKS++ L I G + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 818 RKILGIIPQSPVLFSG-----TVRFNL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
R+ + I+ Q+P + V L +P ++ A ER R +L +
Sbjct: 91 RQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLS---AAER-------REKALAMM 138
Query: 872 AQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
A+V E+ FS GQRQ ++++RAL+ ++V DE +A+DV
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 185
S+ ER ++ + G + + G G GKT+L+ + G L P S + +A+
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 186 VAYVPQVSWIFNA-------TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGD 235
+ ++ + + +N+ F +A E A+ L DL
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA-- 126
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+S GQ++R+++AR S + ++I D+P +ALD
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 193
++ +L G + AIVG +G GK++L++ + G P S +I G V P VS
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVS 73
Query: 194 WIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
+F + TV N+ G +A + E A+ L LPG
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+SGG++QRV++AR + + V + D+P +ALD
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 130 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV 189
+ K + L ++L I G +VAIVG +G GK++L+ + G P S G V +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-------GEVLFN 65
Query: 190 PQVSWIFNATVRD---NILFGSAFEPARYEKAIDVTSLQH-DLDLLPGG-DVTEIGERGV 244
Q ++ R N G ++ + D T+L++ + LL G V E ER
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKSVKEAKERAY 123
Query: 245 N-----------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
+SGG++QRV++ARA+ + + + D+P LD + + +FD
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD- 182
Query: 288 CIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324
+ EL + ++VT+ L ++DR++ + +G +
Sbjct: 183 -LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAY 188
++P L I+ +P G L+ + G G GKT+L+ + G L P + ++ + Y
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 189 VPQVSWIF-------NATVRDNILFGSAFEPARYE--KAIDVTSLQHDLDLLPGGDVTEI 239
Q+ ++ T+R+N L+ F P + + SL+H +D P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG----- 126
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+S GQK++V++ R S + +++ D+PL ALD
Sbjct: 127 -----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 735 PPGWPSSGS--IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 792
PPG P G I+ E++ + +L ++ LSF +PP VG++G GAGKS TLF
Sbjct: 313 PPG-PRLGDKVIEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKS----TLF 365
Query: 793 RIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP----FSE 844
R++ + + G I I + K +D QS R LDP + E
Sbjct: 366 RMITGQEQPDSGTIKIG--ETVKLAYVD---------QS--------RDALDPNKTVWEE 406
Query: 845 HSD-ADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898
S D+ E RA++ R N G D Q + G+ S G+R + L++ L
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVG---RFNFKGSDQQ-KKVGQ-LSGGERNRVHLAKTLKSG 461
Query: 899 SKILVLDEATAAVDVRT-----DALIQKTIREEFKSCTMLIIAH 937
+L+LDE T +DV T +AL EF C + +I+H
Sbjct: 462 GNVLLLDEPTNDLDVETLRALEEAL------LEFAGCAV-VISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-07
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 302
+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I EL G T VL+T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLIT 198
Query: 303 NQLHFLSQV-DRIILVHEGMVKEEGTFED 330
+++ + ++ DR+ ++ G + E+GT +
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 137 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---------- 185
TLL+ ++L P G + ++G G GK++L+ MLG P S+ ++
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 186 ---VAYVPQ-VSWIFNATVRDNILFG-----------SAFEPARYEKAIDVTSLQHDLDL 230
VAY+PQ + TVR+ + G A + + E+AI + L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------ 137
Query: 231 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALD-AHVGRQVFDRC 288
+ R V+ +SGG++QR +A V +S + D+P SALD AH QV
Sbjct: 138 ------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---QVDVLA 188
Query: 289 IRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 331
+ LS + + V LH ++ D ++ + G + +GT +L
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 186
+++ ++ G +V I G G G+T L A+ G PP S IR +
Sbjct: 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
Query: 187 AYVP----QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
AYVP + + + +V +NI S LL
Sbjct: 78 AYVPEDRKREGLVLDLSVAENIALSS---------------------LL----------- 105
Query: 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 302
SGG +Q+V +AR + + V I D+P +D +++ +GK +L++
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 303 NQLHFLSQV-DRIILVHEG 320
++L L + DRI++++EG
Sbjct: 162 SELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--------------- 175
E+ L +INL I + A++G +G GK++ + + + +L
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 176 -SDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID--------VTSLQ 225
D V +R V V Q F ++ DN+ +G + +K +D +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
++ ++ + + +SGGQ+QR+ +AR + DV + D+P SALD ++
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 286 DRCIRGELSGK-TRVLVTNQLHFLSQVDRI 314
D + EL + T V+VT H + Q R+
Sbjct: 188 DLMV--ELKKEYTIVIVT---HNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI------------SAML 169
IRN F W + L ++NLDI + A +G +G GK++ + ++
Sbjct: 83 IRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 170 GELPPVSD-------ASAVIRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPAR 214
GE+ + +S +R + V Q F ++ DN+ +G
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
EK++ +L ++ ++ + G +SGGQ+QR+ +ARA+ +V + D+P S
Sbjct: 202 VEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 275 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG 326
ALD ++ + + EL K +++ H ++Q RI + ++G ++E G
Sbjct: 255 ALDPIATAKIEELIL--ELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 31/184 (16%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
P I IR F + + L NIN+D P + AI+G +G GK++L+ A+ VS
Sbjct: 3 PKIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 178 AS-------------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAF----EPAR 214
A +R V V Q F ++ DN+ FG +R
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273
++ ++ + Q L +V + + + G+ +SGGQ+QR+ +AR + +V + D+P
Sbjct: 120 LDEVVEKSLRQAAL----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 274 SALD 277
SALD
Sbjct: 176 SALD 179
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 108 LPNPPLTSG---LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 164
+P P + P + IRN S+D + + +++L I G + A++G +G GK++L
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTL 61
Query: 165 ISAMLGELPPVSDASAVIRGTVAYVPQ----VSWIFNA-------TVRDNILFGSAFEPA 213
+ + G P + + +++VP ++ +F + TV NI FG +
Sbjct: 62 LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQD 119
Query: 214 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDP 272
+ KA + + L L+ + E +R + +SGGQ+QRV++AR++ + + D+P
Sbjct: 120 KLPKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 273 LSALDA----HVGRQVFDRCIRGELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 327
+ ALD + +V D E G T V+VT +Q ++ RI +++ G + G
Sbjct: 177 MGALDKKLRDRMQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Query: 328 FEDL 331
E++
Sbjct: 234 PEEI 237
|
Length = 377 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 20/244 (8%)
Query: 741 SGSIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797
S I ++V Y + P L+ S T + ++G TG+GKS+M+ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 798 ERGRILIDGFDIAKF-----GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADL 850
E G+ ++ + I + LRK +G++ Q P LF T+ ++ + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910
EA ++ + + ++ L D V + S GQ++ ++L+ + LVLDE T
Sbjct: 124 QEAYKK--VPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 911 VDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+D + + L ++ +E K M + H ++ ++ D ++++ G+V+ +P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIM--VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 966 LSNE 969
SN+
Sbjct: 239 FSNQ 242
|
Length = 289 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 182
L N+N I G +V ++G +G GK++L+S M+G L + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 183 --RGTVAYVPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLP 232
+ + + Q + +F + +V N+LF G+A A A++ + L P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDP 132
Query: 233 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292
+SGGQ+ RV++ RA+ + + D+P S LD + R F + + E
Sbjct: 133 A-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL-RDQFRQWVFSE 180
Query: 293 L--SGKTRVLVTNQL 305
+ +G V VT+ L
Sbjct: 181 VRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVP 190
+ L +N ++ G + I G +G GKTSL+ A L L P + + ++P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA-LAGLWPWGSGRISMPADSALLFLP 462
Query: 191 QVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247
Q ++ T+R+ + + +A F A + L + L E +S
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLS 517
Query: 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 307
GG++QR++ AR + D+ SALD +++ + ++ EL T + V ++
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 308 LSQVDRII 315
+ R +
Sbjct: 577 WNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------DASAV----IR 183
L IN++I G + AI+GG G GK++L + G L P S D S +R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 184 GTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
+V V Q + +F+A+V ++ FG +L+ LP +V + +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-------------AVNLK-----LPEDEVRKRVD 123
Query: 242 RGVNISG--------------GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
+ +G GQK+RV++A + V + D+P + LD +G +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMK 182
Query: 288 CIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL--- 341
+ G T ++ T+ + + D + ++ EG V +G +++ E+ +K+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLR 242
Query: 342 MENAGKMEEYVEEKEDGETVD 362
+ G + E ++EK DG D
Sbjct: 243 LPRIGHLMEILKEK-DGFVFD 262
|
Length = 283 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 128 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIR 183
SW S R + +++ P GSL ++G G GK++L+ + G L P V A +
Sbjct: 8 SW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 184 G--------TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---- 230
G VA V Q TVRD + G P R A D HD +
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI--PHRSLWAGDSP---HDAAVVDRA 121
Query: 231 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
L +++ + +R ++ +SGG++QRV +ARA+ + + D+P + LD V Q+ +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQLETLAL 179
Query: 290 RGELSGKTRVLVTNQLHFL----SQVDRIILVHEGMVKEEGT 327
EL+ T V V LH L S D ++++ G V G
Sbjct: 180 VRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--VAYVPQ---VSWIF 196
+L + G VAI+G +G GK++L++ + G L P S S + G P VS +F
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS-GSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 197 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242
+ TV NI G +A + + ++ L LPG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+SGGQ+QRV++AR + + + D+P SALD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV------ 175
N YF + L N+NLDIP S+ A++G +G GK++ I + + +L P
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 176 ---------SDASAVI--RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYE 216
A V+ R V V Q F ++ DN+ +G F R E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276
+++ +L ++ ++ + + +SGGQ+QR+ +AR + + +V + D+P SAL
Sbjct: 125 ESLKAAALWDEVK-------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 277 D 277
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGTVAYVPQVSWIF 196
++NL + G ++A+VG +G GK+ A+LG LPP + ++ G +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 197 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------- 246
AT+ N +AF P AI+ L + E E V +
Sbjct: 64 IATIMQNPR--TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLPDPEEVLK 120
Query: 247 ------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 298
SGG QRV +A A+ I D+P + LD +V R +R +L G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR-QLFGTGI 179
Query: 299 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+L+T+ L ++++ D + ++ +G + E GT +++ N
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 29/238 (12%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RK 819
+SF + P + +GIVG +G+GKS++L L + + G A+ L L R+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 820 IL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 867
L G + Q+P V + L ++ RA +D +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVE 136
Query: 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTI 923
+ ++ + FS G +Q L ++R L+ R +++ +DE T +DV A L++ +
Sbjct: 137 IDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 924 REEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980
R+ ++I+ H L + R+L++ GRV+E +++L + +++++ S+
Sbjct: 196 RD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 190
S A L N+++ IP+ LV + G +G GK++L++ L
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA------------------- 44
Query: 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250
+ I F F K I + LQ +D+ G +G++ +SGG+
Sbjct: 45 -------SGKARLISFLPKFS---RNKLIFIDQLQFLIDV--GLGYLTLGQKLSTLSGGE 92
Query: 251 KQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHF 307
QRV +A ++S +FI D+P + L Q+ + I+G + G T +L+ + L
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDV 151
Query: 308 LSQVDRII 315
LS D II
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL- 817
L +S + + V + G GAGKS+++ L + G I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 818 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQV 874
R + II Q L +V N+ +E + + ++A+ +L+ L LD
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM---YLRAQKLLAQLKLDINP 137
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTM 932
+ N +GQ+QL+ +++AL +++++L+LDE TA++ ++ + I + K+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 933 LIIAHRLNTIID-CDRILLLDSGR 955
+ I+H+LN + D I ++ GR
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 202
I ++ I+G G GKT+ I + G L P + TV+Y PQ + + TVRD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 203 NILFGSAFEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAV 260
+ D T ++ + +I +R V +SGG+ QRV++A +
Sbjct: 81 LL----------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL 130
Query: 261 YSNSDVFIFDDPLSALD 277
++D+++ D+P + LD
Sbjct: 131 SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 815
VL+ +S IP V ++G +G+GK+ TL RI+ LE G I G D+++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 816 DLRKILGIIPQSPVLF-----SGTVRFNLD--PFSEHSDAD--------LWEALERAHLK 860
D RK+ G + Q LF + F L P E +A L E ++ AHL
Sbjct: 73 D-RKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D AQ+S GQ+Q ++L+RAL +IL+LDE A+D + ++
Sbjct: 131 DR-------YPAQLSG-------GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 921 KTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
+ +R EE K ++ + + + DR++++ G + + TP+++ + F
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 83/312 (26%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LM 815
+L +S + P K+G++G GAGKS TL RI + G D G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFNGEARPA 65
Query: 816 DLRKILGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--E 855
K+ G +PQ P L + TVR N LD F+E S DAD+ +AL E
Sbjct: 66 PGIKV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM-DALLAE 123
Query: 856 RAHLKDAIR-RNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKIL 902
+A L++ I ++ LD ++ A + S G+R+ ++L R LL + +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDS 953
+LDE T +D + A +++ ++ E+ T++ + H DR IL LD
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH--------DRYFLDNVAGWILELDR 233
Query: 954 GRVLEY--------DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLR--- 1002
GR + + + E+ L E S Q +++RS +A++K R
Sbjct: 234 GRGIPWEGNYSSWLEQKEKRLEQEEKEESAR-QKALKRELEWVRSSPKARQAKSKARLAR 292
Query: 1003 -EENKQIDGQRR 1013
EE + Q+R
Sbjct: 293 YEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMD 816
+L ++FTI + V ++G +G GKS++L+ + + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 817 LRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
++ +GI+ Q +LF + F L L R A+ R GLD
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-------TLKGNARRNAANAALER--SGLD 125
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
+ S GQR ++L RALL + K L+LDE + +DV
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--SDASAVIRGTVAYVPQVSWI 195
N+ LDIP + A +G +G GK++++ L +L P + G Y P V +
Sbjct: 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87
Query: 196 ---------------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE-- 238
F ++ DNI +G AR + + D+D L + +
Sbjct: 88 EVRRRIGMVFQKPNPFPKSIYDNIAYG-----AR------INGYKGDMDELVERSLRQAA 136
Query: 239 --------IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+ + G+++SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 137 LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197
L N++ I G ++AIVG +G GK++L+ +LG L + + G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 198 ATVRDNILFGSAFEPARYEKAIDVTSLQH-DLDLLPGGD------------VTEIG---- 240
A +R+ L F + D T+L++ + LL G + +G
Sbjct: 82 AELRNQKL---GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 241 --ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---G 295
R +SGG++QRV++ARA+ +N + + D+P LDA +F + GEL+ G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 296 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327
++VT+ L ++ R + + +G + E +
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 810
VL G+S D + I+G +G+GKS+ L + + + G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 811 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIR 864
K L LR L ++ Q L+S TV N ++ + EA ERA
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA----VKY 135
Query: 865 RNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 920
+G+D + + S GQ+Q +S++RAL ++L+ DE T+A+D V I
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 921 KTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 971
+ + EE K TM+++ H + ++ L G++ E PE+L N S
Sbjct: 196 QQLAEEGK--TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVPQVS 193
L +I+L+ + A++G +G GK++ + + + +L P + I G Y P V
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 194 WI---------------FNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 230
+ F ++ +N+ +G A+ R E+++ +L ++
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK- 140
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+ E + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 141 ------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIRGTV------AYV 189
L INLDI + A++G +G GK++ + + + +L P S I G V Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----SVKIEGEVLLDGQDIYK 74
Query: 190 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 231
+ F ++ DN+ +G + +K +D SL+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG----- 129
Query: 232 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
E+ +R + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 130 -AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPP 174
E+ L N+++ IP S+ A++G +G GK++ I ++ GE
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 175 VSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG 233
D V +R V V Q F ++ DN+ +G A +K +D L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN-KKDLDGVVENA---LRSA 138
Query: 234 GDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
E +R +++SGGQ+QR+ +AR + + +FD+P SALD
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 754 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------ 807
+ ++ V + LSF++ + + IVG +G+GKS L R++E G + D
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 808 ----DIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALE 855
++++ +R + G +I Q P+ V + +E H A EA+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 856 RA-HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914
A + D +R +S S G RQ + ++ AL R +L+ DE T A+DV
Sbjct: 145 EAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 915 TDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
A I + I+ K +M + I H + + + DR+L++ G +E + E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---- 816
L G + + P + +VG GAGKS+M+ L I + G IL G ++ G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 817 ----LRKILGIIPQSPV---LFSG---TVRFNLDPFSE-HSDADLWEALERAHLKDAIRR 865
+ + L +IPQ + +F G RF + + +++AD + L R +L+ + +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD--KLLARLNLRFSSDK 137
Query: 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDALIQKTIR 924
V E S+G++Q++ +++ L SK++++DE T A+ D T++L + IR
Sbjct: 138 -------LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIR 185
Query: 925 E-EFKSCTMLIIAHRLNTIID-CDRILLLDSG 954
E + + ++ I+HRL I + CD + + G
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPPV 175
E L +INL IP + A++G +G GK++L+ M GE
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 176 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 235
+ A +R V V Q F ++ +N+ +G + + +K +D + L G
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS----LRGAA 130
Query: 236 V-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
+ E+ +R +SGGQ+QR+ +AR + DV + D+P SALD ++ + +
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE--LM 188
Query: 291 GELSGK-TRVLVTNQLHFLSQVDRI 314
EL T V+VT H + Q RI
Sbjct: 189 EELKKNYTIVIVT---HSMQQARRI 210
|
Length = 249 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI----------VEL------ERGRILI 804
LH + I + V ++G +G+GKS++L L + +EL GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 805 D--------GFDIAKFGLMDLRKIL-----GIIPQSPVLFSGTVRFNLDPFSEHSDADLW 851
D G+ +F L++ +L G + +P R F+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-----RTCFSWFTREQKQRAL 134
Query: 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911
+AL R +G+ + S GQ+Q ++++RAL++++K+++ DE A++
Sbjct: 135 QALTR-----------VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 912 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
D + ++ T+R+ + T+++ H+++ + C+RI+ L G V YD + N
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDN 242
Query: 969 E 969
E
Sbjct: 243 E 243
|
Length = 262 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----E 798
++ E++ + Y L + + IP + +G +G GKS++L R+ +L
Sbjct: 11 LRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 799 RGRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTV-------------RFNLDPFS 843
G++ G ++ + +++R+ +G++ Q P F ++ + ++D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 844 EHS--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901
E S A LW+ +KD ++++ L L S GQ+Q L ++RA+ + ++
Sbjct: 129 ERSLRQAALWD-----EVKDKLKQSGLSL-----------SGGQQQRLCIARAIAVQPEV 172
Query: 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 939
+++DE +A+D + I++ + E + T++I+ H +
Sbjct: 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDL- 817
L G+ + P + VG+ G GAGKS+++ L + G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 818 RKILGIIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQV 874
R + II Q L +V N+ +E + K+ +R L D
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 933
G+ + GQ+QL+ +++AL +++++L+LDE ++++ + ++ IR+ + +
Sbjct: 137 RPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 934 IIAHRLNTIID-CDRILLLDSGR 955
I+H+LN + CD I ++ G+
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 817
PVL +S ++ + V + G +G+GKS++L +L+ + G+IL+ +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG----EWVDLV 80
Query: 818 ----RKILGIIPQSPVLFSGTVRF-----NLDPFSEHSDADLWEALERAHLKDAIRRNSL 868
R++L + + S +R LD +E A E A K A L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL 139
Query: 869 GLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
L ++ S A FS G++Q ++++R + IL+LDE TA++D A++ + IRE
Sbjct: 140 NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 304
SGGQ+QR+++ARA+ ++ + D+P SALD V QV D R ++ + G + + +++
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHD 486
Query: 305 LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKME 349
L + + R+I++ +G + E+G E + N E + L+ A +E
Sbjct: 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDIE 534
|
Length = 534 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 34/250 (13%)
Query: 127 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----------LISAMLGELPPVS 176
F D KA L NIN+ I S+ A++G +G GK++ L+ + E +
Sbjct: 16 FYTDFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71
Query: 177 DASAV---------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 227
+ + +R + V Q F ++ DNI +G + +K +D Q
Sbjct: 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSL 131
Query: 228 LDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
+V + + +++SGGQ+QR+ +AR + +V + D+P SALD ++ +
Sbjct: 132 KKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345
I + S T ++VT+ + ++ DR G ++EE S+ ELF
Sbjct: 192 LIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEE------SSTDELF--FNPKN 242
Query: 346 GKMEEYVEEK 355
K EEY+ K
Sbjct: 243 TKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826
TI P KVG+VG+ G GKS++L L + I DG + ++ + +
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALL-------KNEISADG---GSYTFPGNWQLAWVNQE 72
Query: 827 SPVLFSGTVRFNLDPFSEHS--DADLWEALER------AHLK---DAI-------RRNSL 868
+P L + + +D E+ +A L +A ER A + DAI R SL
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 869 --GL---DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI--QK 921
GL + Q+ +FS G R L+L++AL+ RS +L+LDE T +D+ DA+I +K
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL--DAVIWLEK 190
Query: 922 TIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLEY 959
++ T+++I+H L+ I+ D+I+ ++ + EY
Sbjct: 191 WLKS--YQGTLILISHDRDFLDPIV--DKIIHIEQQSLFEY 227
|
Length = 638 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
I+ E++ Y +L +S TI P D++G+VGR GAGKS++L + +E + G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDL----- 817
+SF++ + +G+ G GAG++ ++ LF + G + I+G +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 818 ------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
RK GI+P V + T+ L F D A E + AI+R +
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRID--AAAELQIIGSAIQRLKVKTA 395
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSC 930
+ G S G +Q L++ LL ++L+LDE T VDV I K I + +
Sbjct: 396 SPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 931 TMLIIAHRLNTIID-CDRILLLDSGRV 956
+++++ L ++ DR+L++ G++
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 822
LSFT+ + I+G G+GKS++ L ++E G +LID + FG R + +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQRIR 90
Query: 823 IIPQSPV-----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
+I Q P + +R N D E + + E L + L L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL----------LP 140
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 929
S + GQ+Q L L+RAL+ R K+++ DEA A++D+ + + + E E +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 930 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+ + + L + D++L++ G V+E + ++L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---- 189
++ L +I + IP S+ I+G +G GK++L+ +L L + D+ + G V Y
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 190 ---------PQVSWIFNA-------TVRDNILF---GSAFEPARYEKAIDVTSLQHDLDL 230
+V +F ++ DNI + + R K I L+
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV--- 137
Query: 231 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
G E+ +R +SGGQ+QR+++ARA+ V + D+P S +D V Q +
Sbjct: 138 ---GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIE 193
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQK 340
+ I + V+V++ +++V D + ++ G + E G+ ++ S EL +K
Sbjct: 194 KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 182
R + +++L + G +V ++G G GKT+ ++G +P DA +I
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLH 73
Query: 183 ---RGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 235
R + Y+PQ + IF +V DN++ A + D+++ Q + +L+
Sbjct: 74 ARARRGIGYLPQEASIFRRLSVYDNLM-------AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 236 VTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGE 292
+ + + G ++SGG+++RV +ARA+ +N + D+P + +D V D R I
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP---ISVIDIKRIIEHL 183
Query: 293 LSGKTRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
VL+T N L+ +R +V +G + GT ++ +
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF 196
G +V +G G GK++ + + G LPP S + V ++ + Y+P+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 197 -NATVRDNILFGSAF-------EPARYEKAIDVTSL---QHDLDLLPGGDVTEIGERGVN 245
+ VR+ + F + R E+ I++ L QH +IG+
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH----------KKIGQ---- 133
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 303
+S G +QRV +A+A+ + V I D+P + LD + Q+ + I+ KT +L T
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILST- 189
Query: 304 QLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG- 358
H + +V DR+I++++G + + ++LS + +E +++ + E +
Sbjct: 190 --HIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEI 247
Query: 359 ----ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 400
T N ND E + K K + ++Q E+
Sbjct: 248 SSVKNTGGNTWKLTFET--PNDTRPEIFKLAQQKGLKLISLQQNEK 291
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK--FGLMDLRKIL 821
T+P I GR+GAGK+S++N + + ++GRI+++G FD K + R+I
Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI- 78
Query: 822 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880
G + Q LF VR NL S ++ + LG++ + +
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL----------LGIEPLLDRYPGS 128
Query: 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLIIAH 937
S G++Q +++ RALL ++L++DE A++D+ R L+ + + E +L ++H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSH 187
Query: 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
L+ I+ DR+++L+ G+V + EE+ ++
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 38/208 (18%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPVSDASAVI-RGTVAYV 189
++ L +++LD + A++G +G GK++L+ ++ + +L P V+ +++ G Y
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 190 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 231
P+ + F ++ +N+++G + + ++ +D SL+
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK------ 130
Query: 232 PGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
G + E+ +R + +SGGQ+QRV +AR + ++ + + D+P SALD ++ +
Sbjct: 131 -GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-E 188
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQVDRI 314
+ G T +LVT + Q RI
Sbjct: 189 ETLLGLKDDYTMLLVT---RSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 32/205 (15%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS--DASAVIRGTVAY 188
++ + N+NLD+ G++ A++G +G GKT+ + A+ + +L P + ++ G Y
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 189 VP---------QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 232
P +V +F +V DN++ G R + ++ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHL----MEVAERSLR 130
Query: 233 GGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
G + E+ +R +SGGQ+QR+ +ARA+ ++ + D+P SALD ++ D
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED- 189
Query: 288 CIRGELSGKTR-VLVTNQLHFLSQV 311
+ +L T ++VT+ +H ++V
Sbjct: 190 -LMTDLKKVTTIIIVTHNMHQAARV 213
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 31/164 (18%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS------------------DAS 179
++NL+I S+ A +G +G GK++++ + + E+ P + D
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 180 AVIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV-T 237
AV R T+ V Q F ++RDN++ G R +K +D + L G ++
Sbjct: 82 AV-RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS----LRGANLWN 136
Query: 238 EIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
E+ +R G +SGGQ+QR+ +ARA+ DV + D+P SALD
Sbjct: 137 EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IR 183
ER L + G ++A++G +G GK++L++A+ G + + + I
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 184 GTVAYVPQVSWIF-NATVRDNILFGSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTE 238
+V Q ++ + TVR+ ++F S P + EK + S+ +L L + T
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TI 198
Query: 239 IGE---RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
IG RG ISGG+++RVS+A + N + I D+P S LDA ++ G L+
Sbjct: 199 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL--GSLAQ 254
Query: 296 KTRVLVTNQLHFLSQV----DRIILVHEG 320
K + +VT+ S+V D ++++ EG
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
LS + + + +VG GAGKS++L + ++ G I G + + +L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 824 IPQ--SPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878
+ Q +P F + F + H + L + LGLD ++ +
Sbjct: 74 LSQQQTPP-------FAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--LGLDDKLGRSV 124
Query: 879 ENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 930
S G+ Q + L+ +L+ ++L+LDE ++DV A + + + E C
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE---LCQ 181
Query: 931 ---TMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
+++ +H LN T+ DR+ LL G++L +E+L+ E
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197
L NI+ ++P G +V I+G G GK++L + + G P + + I+G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNG 98
Query: 198 A-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------SGG 249
T +NI EK ++ ++ E + G I S G
Sbjct: 99 QLTGIENIELKGLMMGLTKEKIKEIIP-----------EIIEFADIGKFIYQPVKTYSSG 147
Query: 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 309
K R+ A +V+ N D+ + D+ LS D ++ D+ + GKT ++ H LS
Sbjct: 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS---HSLS 204
Query: 310 QVD----RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 357
QV + + +H G VKE G +++ ++ + + ++ +M VEE++D
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLKKYNQMS--VEERKD 251
|
Length = 549 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 64/199 (32%)
Query: 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER---GRILIDGFDIAKFGLMDLR 818
LSF++PP VGI+G GAGKS TLF+ I E+ G I I G + K +D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKS----TLFKMITGQEQPDSGTIKI-G-ETVKLAYVD-- 393
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------------RAHLKDAI 863
QS R LDP + +WE + RA++
Sbjct: 394 -------QS--------RDALDP-----NKTVWEEISGGLDIIKVGNREIPSRAYVG--- 430
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-----DAL 918
R N G D Q + G S G+R L L++ L + +L+LDE T +DV T +AL
Sbjct: 431 RFNFKGGDQQ-KKVG-VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 919 IQKTIREEFKSCTMLIIAH 937
EF C + +I+H
Sbjct: 489 ------LEFPGCAV-VISH 500
|
Length = 556 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
+ R+ +S+ E L IN G +VA++G G GK++L G L P S
Sbjct: 2 LETRDLKYSYPDGTE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 177 ---------DASAVI--RGTVAYVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTS 223
D +++ R TV V Q +F TV +++ FG
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP--------------- 104
Query: 224 LQHDLDL-LPGGDVTE--------IGERGV------NISGGQKQRVSMARAVYSNSDVFI 268
L+L L +V + +G G ++SGGQK+RV++A + ++ +
Sbjct: 105 ----LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
Query: 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 327
D+P S LD Q+ G T ++ T+ + + D++ ++ +G + +EGT
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 328 FEDLSNNGELFQKLMENAGKMEEYVE--EKEDGETVDN 363
+++ ++ E +K ++ +E KED +
Sbjct: 221 PKEVFSDIETIRKANLRLPRVAHLIEILNKEDNLPIKM 258
|
Length = 275 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAMLGELPPV- 175
+ + N F ++ +++ L ++ I G V+I+G G GK++ LI + E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 176 --------SDASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225
++ +R + V Q + ATV D++ FG + E+ I +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----R 120
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
D LL + +SGGQKQRV++A + ++ I D+ S LD GRQ
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEI 179
Query: 286 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEE-------GTFEDLSNNG 335
R I E+ K ++ V + H L + DRI+++ G + +E T ED+ G
Sbjct: 180 MRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIG 238
Query: 336 -------ELFQKLMENAGKM-EEYVEEKEDGETVDNK 364
L + L +N + E+Y+ E E E + +K
Sbjct: 239 LDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLADK 275
|
Length = 277 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA-----------------V 181
+N DI + AI+G +G GK++ + A+ + +L P + +
Sbjct: 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117
Query: 182 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
+R + V Q F ++ DNI +G +K ++ + L E+ +
Sbjct: 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSD 174
Query: 242 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 296
R + +SGGQ+QR+ +AR + ++ + D+P SALD ++ D + EL G
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED--LIQELRGSY 232
Query: 297 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
T ++VT+ + S+V D + +EG++ E L N
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 119 AISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 173
+S + K + T+LN ++L + G VA++G +G GK++L ++G E P
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 174 -------PVS----DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 222
P++ R + V Q D+I SA P + + I
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQ----------DSI---SAVNPRKTVREIIRE 114
Query: 223 SLQHDLDLLPGGDVTEIGE--------------RGVNISGGQKQRVSMARAVYSNSDVFI 268
L+H L L + E R +SGGQ QRV +ARA+ + I
Sbjct: 115 PLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 269 FDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMVK 323
D+ +S LD + V + + G + +T H L V+ R++++ G +
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT---HDLRLVERFCQRVMVMDNGQIV 231
Query: 324 EEGT 327
E
Sbjct: 232 ETQP 235
|
Length = 268 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 748 DVVLR------YRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE 798
+V+L + P P + +SF++ + +GI G GAG++ ++ LF
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316
Query: 799 RGRILIDGFDIA--------KFGLMDL---RKILGIIPQSPVLFSGTVRFNLDPFSEHSD 847
G I IDG + G+ + RK GI+P V + T+ LD F+ S
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA-ALDRFTGGSR 375
Query: 848 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
D +A E + ++I+R + A A S G +Q L++ LL KIL+LDE
Sbjct: 376 ID--DAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDRILLLDSGRV 956
T +DV I K I + + +I I+ L ++ DR+L++ G++
Sbjct: 433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELER--GRILIDGFDIAKFGLM 815
P+L S + P + V ++GR G+G S++L L R G I +G +F
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE- 79
Query: 816 DLRKILGIIPQSPVLFSG---------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 866
+++ TVR LD F+
Sbjct: 80 --------KYPGEIIYVSEEDVHFPTLTVRETLD-FA----------------------- 107
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 925
L + +E S G+R+ +S++ AL+ R+ +L D +T +D T I K IR
Sbjct: 108 ---LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 926 --EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEY 959
K+ T + + + I D D++L+L GR + Y
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFG 813
P++HG+S T+ + +VG +G+GKS + L L V GR+L+DG +A
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 814 LMDLRKILGII--PQS---PVLFSGT-VRFNLDPFSEHS-DADLWEALERAHLKDAIRRN 866
L RKI I+ P+S P+ T R + + DA L ALE L++A R
Sbjct: 76 LRG-RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARV- 133
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKT 922
L E S G Q + ++ ALL + ++ DE T +DV A L++
Sbjct: 134 ---LKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 923 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+++ ++ ML++ H + + D + ++ GR++E E L + + ++
Sbjct: 187 VQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
|
Length = 254 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRK 819
L +SF ++G GAGKS++L L + + G ILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 820 ILGIIPQ----SPVLFSGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
+ II Q P + TV NL P H + L ++ + LG+D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLP---HKGGIVNRRLLNYEAREQLEH--LGVD 131
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDAL--IQKTIREEFK 928
+ S+GQRQ++ +++AL R ++++ DE T+++ R + L + + +R E +
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 929 SCTMLIIAHRLNTIID-CDRILLLDSGR 955
+L ++HR+ I CD I + GR
Sbjct: 192 --VILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 213 ARYEKAIDVTSL------QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266
R ++AID+ + LD+ P +SGG QRV +A A+ +
Sbjct: 126 TRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKL 174
Query: 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTR---VLVTNQLHFLSQV-DRIILVHEGMV 322
I D+P +ALD + Q+ + + EL K VL+T+ L +++ +II+++ G V
Sbjct: 175 LIADEPTTALDVTIQAQIIELLL--ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 323 KEEGTFEDL 331
E G D+
Sbjct: 233 VETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 55/219 (25%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
VL+ L IP V +VGR+G GKS TL R L+ G + G
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKS----TLLR---------LLAGLETPSAG------ 67
Query: 820 ILGIIPQSPVLFSGTVRFNLDPFSE--------HSDADL--WEAL-------ERAHLKDA 862
L +GT P +E DA L W+ + + +DA
Sbjct: 68 ---------ELLAGTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113
Query: 863 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
+ ++GL + +E S GQ+Q ++L+RAL+ R +L+LDE A+D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 921 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 956
I ++ T+L++ H ++ + DR+LL++ G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822
+SF++ + +G G G+G++ ++N LF + + G I ++G DI+ +D ++K +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 823 IIPQS-------------------PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863
I +S L G + + F E + E +R L A+
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELL--AL 398
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
+ +S+ + ++E S G +Q + +S+ L ++++ DE T +DV A I K +
Sbjct: 399 KCHSV--NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 924 R---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
R ++ K +L+++ L II CDRI + GR+ + T + +S E
Sbjct: 453 RQLADDGK--VILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
Length = 510 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 756 ELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG----FDI 809
P V L ++ + P ++G GAGKS++L LF I + + G IL G F
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 810 AKFGLMD----LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK----- 860
+K L + + + L ++ Q V+ ++W L R K
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM-----------------DNMW--LGRYPTKGMFVD 107
Query: 861 -DAIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
D + R++ L +D SV Q Q++ +++A +KI+++DE T+++
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 914 RTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGR 955
+ + IR+ + + C ++ I+H++ I CD I +L G+
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821
GLSFT+ + V I G GAGK+S+L L + + G +L G I + + +L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 822 ------GIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 871
GI L T +RF D LWEAL + L D
Sbjct: 78 YLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLA---GF----ED 124
Query: 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925
V S GQ++ ++L+R L R+ + +LDE A+D + A ++ + +
Sbjct: 125 VPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
A+ + F + R L +++ + G VA++G G GK++L S +
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 177 ----------DASAVIRGTVAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAI 219
A + Q + + +VR N+ + A AR + +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
L D ++ ++GG ++RV +ARA+ + + D+P LD
Sbjct: 118 ARLGLAERAD-----------DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 280 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 331
R +R L+ + V H + ++ DR++++H G V +G +L
Sbjct: 167 -SRAAITAHVR-ALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 117 LPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELP 173
+PAI +++ F ++ SKA + I++DI + AI+G +G GK++ I + + EL
Sbjct: 5 IPAIKVKDLSFYYNTSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 174 -PVSDASAV-IRGTVAYVP---------QVSWIFNATVRDNILFGSAFEPARYEKAIDVT 222
PV V G Y P Q+ +F R N S +E Y I
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAK 117
Query: 223 SLQHDLD-----LLPGGDV-----TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272
Q DLD L G + ++ + + +SGGQ+QR+ +ARA+ V + D+P
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 273 LSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRI 314
SALD +V + +R EL T +VT H + Q R+
Sbjct: 178 CSALDPIATMKVEELIHSLRSEL---TIAIVT---HNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
SGGQ+QR+++ARA+ + DV + D+P+SALD V QV
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQ-------------- 191
+AI+G G GK++L + G + P S D + G +Y Q
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 192 ----VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247
+S I + +R N + EP + EK I T Q + LLP ++
Sbjct: 102 PRQRISQILDFPLRLN----TDLEPEQREKQIIETLRQ--VGLLP----DHASYYPHMLA 151
Query: 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLH 306
GQKQR+ +ARA+ V I D+ L++LD + Q+ + + E G + + VT L
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 307 FLSQV-DRIILVHEGMVKEEGTFEDL 331
+ + D+++++H+G V E G+ D+
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 8e-06
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASA 180
A + L +++ P ++ +++G TG GKT+ + + G++ +
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91
Query: 181 VIRGTVAYVPQVSWIFN------ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 234
R + + +V +F ++ DN+L G R K + + + +
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG-----VRAHKLVP----RKEFRGVAQA 142
Query: 235 DVTEIG----------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
+TE+G + +SGGQ+Q + +AR + N +V + D+P SALD ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 285 FDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
+ IR T ++VT+ L +++ DR L +G + EEG E L
Sbjct: 203 -EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 142 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 185
L P G +V I+G G GK++ + + GEL P VI RGT
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 186 --------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 231
YV + + V + L E ++++ ++ L++ LD
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD-- 208
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCI 289
++ E +SGG+ QRV++A A+ ++DV+ FD+P S LD RQ + R I
Sbjct: 209 -----RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDI---RQRLNAARVI 256
Query: 290 RGELSGKTRVLV 301
R V+V
Sbjct: 257 RELAEDGKYVIV 268
|
Length = 591 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 120 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
I++ N ++ + LL N++L + G + +VG G GK++L+ + GEL P D+
Sbjct: 4 ITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DS 57
Query: 179 SAVIRG---TVAYVPQVSWIF-NATVRDNILFGSAFEP-----ARYEKAID--------- 220
V R V Y+ Q + TV D ++ F A E+A
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI--EGFGELRELLAELEEAYALLADPDDEL 115
Query: 221 VTSLQHDLDLLPGGDV-TEIGE--RGVNI----------SGGQKQRVSMARAVYSNSDVF 267
+ L+ L+ L G + E G+ SGG ++RV++ARA+ D+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175
Query: 268 IFDDPLSALDA 278
+ D+P + LD
Sbjct: 176 LLDEPTNHLDL 186
|
Length = 530 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 60/221 (27%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVIRGTVA------YV 189
L +++DIP S+ A++G +G GK S L L ++D +A I G+V Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGK----STFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 190 PQVSWI---------------FNATVRDNI-----------------LFGSAFEPAR--- 214
V+ + F ++R+NI L G + A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
E+++ +L +++ + + + +SGGQ+QR+ +AR + + +V + D+P S
Sbjct: 177 VERSLRQAALWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 275 ALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 314
ALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 230 ALDPIATSKIED--LIEELAEEYTVVVVT---HNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 52/272 (19%)
Query: 104 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 163
E + P G P + +RN S K +++ + G ++ I G G G+T
Sbjct: 248 EDLFPEPPEEGIGEPVLEVRN--LSGGGKVR-----DVSFTVRAGEILGIAGLVGAGRTE 300
Query: 164 LISAMLGELPPVSDASAVIRGT--------------VAYVP---QVSWIF-NATVRDNIL 205
L A+ G P S ++ G +AYVP + + + ++ +NI
Sbjct: 301 LARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359
Query: 206 FGS-------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258
S R E+A+ L + IG +SGG +Q+V +AR
Sbjct: 360 LASLRRFSRRGLIDRRKERAL-AERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLAR 414
Query: 259 AVYSNSDVFIFDDPLSALDAHVG--RQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DR 313
+ ++ V I D+P +D VG +++ R IR EL+ GK ++++++L L + DR
Sbjct: 415 WLATDPKVLILDEPTRGID--VGAKAEIY-RLIR-ELAAEGKAILMISSELPELLGLSDR 470
Query: 314 IILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345
I+++ EG + E E+ + + +M A
Sbjct: 471 ILVMREGRIVGELDREEAT-----EEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 108 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 167
+ PP T G + + + S + + +++ ++ G +V I G G G++ L+ A
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 168 MLGELPPVS--------------DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSA 209
+ G P S R +AYVP + + ++ +N++ G
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 210 FEPARYEKAI--------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261
+ L + D+ ++SGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQLHFLSQV-DRII 315
D+ I P LD VG F I L +GK +L++ L + ++ DRI
Sbjct: 420 RRPDLLIAAQPTRGLD--VGAIEF---IHERLLELRDAGKAVLLISEDLDEILELSDRIA 474
Query: 316 LVHEGMVKEEGTFED 330
+++EG + E+
Sbjct: 475 VIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 304
SGGQ+QRV +A A+ + D+ I D+P +ALD V Q+ D + ++ EL G + +T+
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217
Query: 305 LHFLSQV-DRIILVHEGMVKEEGTFEDL 331
L + + DR+ ++ G + E GT E L
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------AMLGELPPVSDASA--- 180
++ L +IN+ I + A++G +G GK++ + A + L +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 181 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDL 228
+R V V Q +F ++ +NI + E A + L ++
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288
++ + + +SGGQ+QR+ +ARA+ + + D+P SALD + V +
Sbjct: 133 K-------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEEL 184
Query: 289 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
++ + ++VT+ + +V D H G + E G ++ N
Sbjct: 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 44/262 (16%)
Query: 744 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLF----- 792
IK +++V + +LP L +S I + + I+G+TG+GK++ LN L
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 793 ---------------RIVELERGRILIDGFDIAKF-GLMDLRKILGIIPQ--SPVLFSGT 834
+ E +++I K + ++R+ +G++ Q LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 835 VRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSL 891
+ ++ P S + EA +RA I +GLD + S GQ++ ++L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRA--AKYIEL--VGLDESYLQRSPFELSGGQKRRVAL 176
Query: 892 SRALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDR 947
+ L LV DE TA +D V+ I + ++ K T++++ H L+ +++ R
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKR 234
Query: 948 ILLLDSGRVLEYDTPEELLSNE 969
+ G++++ ++LS+
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
P L ++ T+ + + ++G +G GK+++LN + V + G I +DG + G R
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--R 72
Query: 819 KIL----GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874
++ G++P V V F L + + + + LE AH +++ L
Sbjct: 73 GVVFQNEGLLPWRNVQ--DNVAFGL----QLAGVEKMQRLEIAH--QMLKKVGL------ 118
Query: 875 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----DALIQKTIREE 926
A + + S GQRQ + ++RAL ++L+LDE A+D T L+ K +E
Sbjct: 119 EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178
Query: 927 FKSCTMLIIAHRLNTIIDCDRILLLDS---GRVLE 958
K +L+I H + + L+L S GRV+E
Sbjct: 179 GKQ--VLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 131 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 185
+ R ++ + G + + G G GKT+L+ + G PP++ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245
+ + ++ +A L S E R+ A + L + +R V
Sbjct: 69 DSIARGLLYLGHAPGIKTTL--SVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVA 124
Query: 246 -ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+S GQ++RV++AR + S ++I D+P +ALD
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 199
NI+L +P S+ ++G G GK++L+ + G L P S + G W T
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGH-------PW----T 65
Query: 200 VRDNILFGSAFE-PARYEK--AID----VTSLQH-----DLDLLPGGDVTEIGERGV-NI 246
+D GS E P YE A + T+L ++L D+T G++
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306
S G KQR+ +A A+ ++ + I D+P + LD +G Q IR V++++ H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILSS--H 182
Query: 307 FLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQK 340
LS+V D I ++ EG++ +G N +LF +
Sbjct: 183 ILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 181 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
V+R + V Q F+ ++ DN+ FG RY K ++H L D E+
Sbjct: 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWD--EVK 140
Query: 241 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
++ G+++SGGQ+QR+ +ARA+ + +V + D+P SALD R+V
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 54/187 (28%)
Query: 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 203
+ G ++ IVG G GKT+ + + G+L P D T Y PQ
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ------------ 68
Query: 204 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263
ID L GG++ QRV++A A+ N
Sbjct: 69 --------------YID----------LSGGEL---------------QRVAIAAALLRN 89
Query: 264 SDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321
+ ++FD+P + LD R R IR E KT ++V + L L + I V EG
Sbjct: 90 ATFYLFDEPSAYLDIE-QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
Query: 322 VKEEGTF 328
G
Sbjct: 149 PGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 36/169 (21%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASAV---- 181
L NIN+ + + A++G +G GK++ + GE+ D +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 182 -----IRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDL 228
+R ++ V Q F ++ +N+ +G + R E A+ +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+G+ N+SGGQ+QR+ +ARA+ ++ ++ +FD+P SALD
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
|
Length = 265 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 51/259 (19%), Positives = 111/259 (42%), Gaps = 22/259 (8%)
Query: 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 782
+ + + ++ R R L L +S P + + ++G +GA
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHL---LKNVSGVAKPGELLAVMGSSGA 62
Query: 783 GKSSMLNTL-FRIVE-LER-GRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFN 838
GK++++N L FR + ++ G +L++G ++R I + Q + + TVR +
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 839 LDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-----ENFSVGQRQLLSL 891
L F H + + +R + + ++ L + G + S G+R+ L+
Sbjct: 120 LM-FQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIIDC--DRI 948
+ LL +L DE T+ +D + + ++ K T++ H+ ++ + D+I
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 949 LLLDSGRVLEYDTPEELLS 967
+L+ GRV +P++ +
Sbjct: 238 ILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA----------------- 180
++++D P S+ AI+G +G GK++++ ++ + +L P + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 181 VIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
IR V V Q F A ++ DN++ G R ++ ++ L + D E+
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALWD--EV 138
Query: 240 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
+R + +SGGQ+QR+ +AR + +V + D+P SALD
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 46/227 (20%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 185
+++L + G L I+G G GKT+++ + G+ P + S + GT
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAG 78
Query: 186 VAYVPQVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQHDLD 229
+ Q +F N TV +N+ +F S F E R E+ ++ L + D
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD 138
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
L G +S GQKQ + + + + + + D+P++ + + +
Sbjct: 139 RLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 290 RGELSGKTRVLVTNQ-LHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 334
L+GK V+V + F+ + + V H+G V EG+ + + +
Sbjct: 188 S--LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 113 LTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAM 168
L+ A+ +RN F D +A L +I++ IP + A +G +G GK++L + M
Sbjct: 19 LSDEQTALEVRNLNLFYGDKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74
Query: 169 ---------LGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP 212
GE+ + D A +R V V Q F ++ +N+++G +
Sbjct: 75 NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQG 134
Query: 213 ARYEKAIDVT--------SLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263
+ +D +L ++ D L E +SGGQ+QR+ +ARA+
Sbjct: 135 INNRRVLDEAVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIE 186
Query: 264 SDVFIFDDPLSALD 277
+V + D+P SALD
Sbjct: 187 PEVLLLDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--------VAYV 189
L ++NL + G + A++G G GK++L+ + G P + I +A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK-GTITINNINYNKLDHKLAAQ 79
Query: 190 PQVSWIFNA-------TVRDNILFGS--------------AFEPARYEKAIDVTSLQHDL 228
+ I+ TV +N+ G R + L+ DL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-- 286
D N+S KQ + +A+ + ++ V I D+P S+L +F
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 287 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345
+R E G V ++++L + ++ DR ++ +G G D+SN+ + +LM
Sbjct: 189 NQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV--RLMVGR 244
Query: 346 GKMEEYVEEKEDGETVDNKT 365
+ KE+ + ++T
Sbjct: 245 ELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 816
VLH +SF+I + + IVG +G+GKS++L+ L + G ++ +G ++K +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 817 LR-KILGIIPQ---------------SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 860
LR + LG I Q P+L E RA
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRALEM 129
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 919
A ++GL+ + + S G+RQ ++++RAL+ ++++ DE T +D R D++
Sbjct: 130 LA----AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 920 Q 920
Q
Sbjct: 186 Q 186
|
Length = 233 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLR 818
L+ +S + P ++G +GAGK+++L+ L + + G ILI+G + K + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQ 78
Query: 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 877
+ G + Q V TVR EAL +R GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVR---------------EALR---FSALLR----GL------- 109
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-----CTM 932
SV QR+ L++ L + IL LDE T+ +D + I + +++ S CT+
Sbjct: 110 ----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 933 LIIAHRLNTII--DCDRILLLDSG 954
H+ + I DR+LLL G
Sbjct: 166 ----HQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVI------------- 182
L I+++I S+VA +G +G GK++ + + +L P + I
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 183 ----RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 230
R V V Q F ++ +N+ +G +AF R E+ + +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
++ E +SGGQ+QR+ +ARA+ + V + D+P SALD
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV------A 187
E L I+ I G +V +G G GKT+ + + G L P S + G V
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS-GEVRVAGLVPWKRRKK 91
Query: 188 YVPQVSWIF--------NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDV 236
++ ++ +F + V D+ +A PAR++K +D S +LL ++
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEEL 146
Query: 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296
+ R +S GQ+ R +A A+ ++ D+P LD + +
Sbjct: 147 LDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 297 TRVLVTNQLHFLSQV----DRIILVHEG 320
T VL+T+ H++ + R++++ +G
Sbjct: 205 TTVLLTS--HYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 40/243 (16%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 815
V+ L+ TI V ++G +G GK+ T+ R+V LE+ G+I IDG D+ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 816 DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 870
R I ++ QS LF V + L + E +R +K+A+
Sbjct: 77 Q-RDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKE----ERKQR--VKEAL------- 121
Query: 871 DAQVSEAG------ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924
V AG + S GQ+Q ++L+RAL+ + K+L+ DE + +D +++ IR
Sbjct: 122 -ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 925 EEFKS--CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981
E + T L + H + D +++++ G++++ +P+EL S F M G
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF--MASFMG 238
Query: 982 AAN 984
AN
Sbjct: 239 DAN 241
|
Length = 351 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 46/236 (19%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAVIRGTV------- 186
R L +++L I G + A++G G GK++L+ A+ G+L + A + G V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 187 ------------AYVPQVSW-IFNATVRDNILFG------SAFEPARYEKAIDVTSLQH- 226
A +PQ + F + R+ +L G A + I +L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---------YSNSDVFIFDDPLSALD 277
L G DVT +SGG+ RV AR + + D+P +ALD
Sbjct: 134 GATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 278 AHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
++ D R + + + +V + DRI ++ +G + G D+
Sbjct: 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 38/223 (17%)
Query: 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------- 810
P + +SF++ + VG+ G GAG+S ++ L+ G++ +DG I
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 811 -KFGLM----DLRKILGIIPQSPV----------LFSGTVRFNLDPFSEHSDADLWEALE 855
+ G+M D RK GIIP V ++ E +AD + +
Sbjct: 326 IRAGIMLCPED-RKAEGIIPVHSVADNINISARRHHL-RAGCLINNRWEAENADRF--IR 381
Query: 856 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
++K R + N S G +Q L R L K+++LDE T +DV
Sbjct: 382 SLNIKTPSREQLIM----------NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Query: 916 DALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 956
I I E +L ++ L ++ DRI+++ GR+
Sbjct: 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------- 811
P + +SF + + +GI G GA ++ ++ TLF I E G I + G I
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321
Query: 812 ---FGLM-DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK------- 860
F L+ + R+ GI + F+ + N+ + L+ + +K
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSLIS-NIRNYKNK-----VGLLDNSRMKSDTQWVI 375
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
D++R + G Q+ + S G +Q + + R LL + +IL+LDE T +DV I
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 921 KTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 956
+ I E K ++II+ + ++ DRIL++ +G V
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID----GFDIAKFGLMDL-- 817
+SF + P + +GIVG +G+GK+++L + GR+ D + + DL
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCI-------SGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 818 -----RKIL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 860
R+ L G + Q+P V G + L ++ RA +
Sbjct: 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-----RAEAQ 132
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--- 917
D + + LD ++ + FS G +Q L ++R L+ R +++ +DE T +DV A
Sbjct: 133 DWLEEVEIDLD-RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 918 -LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 958
L++ +RE ++I+ H L + DR++++ G+V+E
Sbjct: 192 DLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 775 GIVGRTGAGKSSMLNTLFRIVELE-----RGRILI--DGFDIAKFGL--MDLRKILGIIP 825
++G +G GKS+ L R+ +L G I++ D +I + +++R + ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 826 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSV 883
Q P F ++ N+ + ++ +++A+R +L + ++ + N S
Sbjct: 106 QKPNPFPKSIFENV-AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164
Query: 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 939
GQ+Q L ++RAL +IL+ DE T+A+D A I++ I + T+LI+ H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--LRKILGIIPQSPV-LFS 832
++G +GAGK+++LN L E ++ G + +D ++ +G + Q + L +
Sbjct: 794 LMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
Query: 833 GTVRFNLD-----------PFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 879
TVR +L SE + ++ + LE DA+ V GE
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV----------VGVPGE 900
Query: 880 NFSVGQRQLLSLSRALLRRSKILV-LDEATAAVDVRTDALIQKTIREEFKS-----CTML 933
+V QR+ L++ L+ + K+L+ LDE T+ +D +T I K +R+ CT+
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI- 959
Query: 934 IIAHRLNTII--DCDRILLLDSG 954
H+ + I+ + DR+LLL G
Sbjct: 960 ---HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 224 LQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
L HD + LP T +G +SGGQKQR+S+ARA+ N + I D+ S+LD
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------------ 806
P+L I +++V +VGR GAGKS+++ L V L+ GRI+ +
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 807 -------FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD------ADLWEA 853
+D G+ + + L L ++ S+ A L E
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE----------TDPSEKNLNELAKLQEQ 126
Query: 854 LERA---HLKDAIRRN--SLGLDA--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
L+ L++ I LGLD +S S G + +L RAL+ +L+LDE
Sbjct: 127 LDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 907 ATAAVDVRT 915
T +D+ T
Sbjct: 183 PTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 743 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
I ++V Y+ P L ++ TI +G TG+GKS+++ L + +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 800 GRILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 853
G + +D I + +RK +G++ Q P LF TV ++ ++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
A K A+ +G+ + E S GQ + ++++ L KILVLDE TA +D
Sbjct: 122 EALAREKLAL----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 913 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+ +K + FK T++++ H ++ + + D + +L+ G+++ P+++
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
V+ L TI + + ++G +G GK+++L + + GRI++DG DI +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAEN 85
Query: 819 KILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLG 869
+ + + QS LF TV N+ P +E + EAL L++ +R
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQ 144
Query: 870 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 929
L S GQ+Q ++++RA++ + K+L+LDE+ +A+D + ++K ++ E K+
Sbjct: 145 L-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKA 189
Query: 930 ------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 964
T + + H + + DRI+++ GR+ + TP E
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLI---SAMLGELPPVSDASAV------------- 181
L I+LD L A++G +G GK++ + + M ++ + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 235
+R V V Q F +V DN+ +G + ++ ID SL+ D
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 236 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
+ SGGQ+QR+ +ARA+ V + D+P SALD ++ + + EL
Sbjct: 140 --NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM--ELKH 195
Query: 296 K-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
+ T ++VT+ L ++ D+ + G + E G E++
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822
+S + + +G+ G GAG++ + TL+ + GRI+++G +I L + L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 823 IIP---QSPVLF-SGTVRFNLDPFSEHSDADLW--EALERAHLKDAIRRNSLGLD-AQVS 875
+P QS L+ + +N+ + H+ W A E A L + RR +L +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALT-HNRRGFWIKPARENAVL-ERYRR-ALNIKFNHAE 398
Query: 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT-MLI 934
+A S G +Q + +++ L ++L++DE T VDV I + IR +L
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 935 IAHRLNTIID-CDRILLLDSGRV 956
I+ L I DR+L++ G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-------------- 792
E+VV RY L+ L T P VGI+G G GKS+ L L
Sbjct: 78 EEVVHRYGVN-GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 793 ---RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSD 847
+++ RG L + F G +LR + + P + G V
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEG--ELRAVHKPQYVDLIPKVVKGKVG----------- 182
Query: 848 ADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
+L + + ER + + R LGL+ + S G+ Q ++++ ALLR + + DE
Sbjct: 183 -ELLKKVDERGKFDEVVER--LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 907 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962
++ +D+R + IRE + ++++ H L ++D L D +L Y P
Sbjct: 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLD----YLSDFVHIL-YGEP 290
|
Length = 591 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 8e-05
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 51/193 (26%)
Query: 142 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 185
L IP G + I+G G GKT+ + + GEL P V+ RGT
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 186 ----------VA----YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 231
V YV + +F VR+ L E + ++ ++ L++ LD
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD-- 207
Query: 232 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 288
R + +SGG+ QRV++A A+ ++D + FD+P S LD RQ + R
Sbjct: 208 ----------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVARL 254
Query: 289 IRGELSGKTRVLV 301
IR EL+ VLV
Sbjct: 255 IR-ELAEGKYVLV 266
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGE--------------LPPVSDASAVIRG----TVAYV 189
G L A++G +G GKT+L+ + G P + A I G +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 190 PQVSWIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244
PQV TVR+++++ SAF E ++ EK + V + ++L D +G GV
Sbjct: 966 PQV------TVRESLIY-SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-VGLPGV 1017
Query: 245 N-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 302
+S Q++R+++A + +N + D+P S LDA V R +R + +G+T V
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTI 1076
Query: 303 NQ 304
+Q
Sbjct: 1077 HQ 1078
|
Length = 1470 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 192
+ L +NL I G + A++G G GK++L ++G P V G + + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE----VTEGEILFKGED 65
Query: 193 SWIFNATVRDNILFG--SAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--IS 247
I + + G AF P V + D L R VN S
Sbjct: 66 --ITDLPPEERARLGIFLAFQYPPEIP---GVKNA----DFL----------RYVNEGFS 106
Query: 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 305
GG+K+R + + + D+ I D+P S LD R V + +R E GK+ +++T+
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164
Query: 306 HFLSQV--DRIILVHEGMVKEEGTFE 329
L + DR+ ++++G + + G E
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKV-GIVGRTGAGKSSMLNTLF------------- 792
E+ V RY L+GL IP KV GI+G G GK++ + L
Sbjct: 77 EEPVHRYGVN-GFKLYGLP--IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE 133
Query: 793 ----RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHS 846
+++ RG L + F G +++ + + P +F G VR
Sbjct: 134 PSWDEVLKRFRGTELQNYFKKLYNG--EIKVVHKPQYVDLIPKVFKGKVR---------- 181
Query: 847 DADLWE-ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
+L + ER L + + R LGL+ + S G+ Q ++++ ALLR + D
Sbjct: 182 --ELLKKVDERGKLDEVVER--LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
Query: 906 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944
E T+ +D+R + + IRE + +L++ H L ++D
Sbjct: 238 EPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL-AVLD 275
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 829
P + + IVG G+GK+++ L R + G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------- 33
Query: 830 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889
+ + + E L + V + S R L
Sbjct: 34 -----IYIDGEDILEEVLDQLLLII-------------------VGGKKASGSGELRLRL 69
Query: 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEFKSCTMLIIAHRLNTI 942
+L+ A + +L+LDE T+ +D +AL+ + K+ T+++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 943 IDCDRILLLDSGRVLEYDTPE 963
+L R +
Sbjct: 130 G--PALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 51/197 (25%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT------------ 185
G ++ +VG G GK++ + + G+L P D ++ RG+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 186 -------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
YV + V + L E + ++ +D L+H LD
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD--------- 134
Query: 239 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 295
R + +SGG+ QRV++A A+ ++D + FD+P S LD +Q + R IR
Sbjct: 135 ---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRELAED 188
Query: 296 KTRVLVTNQLHFLSQVD 312
VLV H L+ +D
Sbjct: 189 DNYVLVVE--HDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 44/229 (19%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA--------------- 180
L +NL+IP ++ A++G +G GK++L+ L EL P + S
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 181 VIRGTVAYVPQV-SWIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 230
+R V V Q+ + I N ++ +N+ G R A++ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
+ +SGGQ+QR+ +ARA+ +V + D+P + LD ++ +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLF 189
Query: 291 GELSGK-TRVLVTNQLHFLSQVDRI----ILVHEGMVKEEGTFEDLSNN 334
EL T VLVT HF Q RI +++G + E G ++ N
Sbjct: 190 LELKKDMTIVLVT---HFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)
Query: 141 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVP------ 190
++L IP + A++G +G GK++L+ L EL + +R G Y P
Sbjct: 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82
Query: 191 ---QVSWIF-------NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLL 231
+V +F + T+ DN+ G R E A+ +L ++
Sbjct: 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-- 140
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
+ + N+SGGQ+QR+ +ARA+ + + D+P + +D VG + +
Sbjct: 141 -----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFE 194
Query: 292 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE 336
T VLVT+ ++V D + ++ G + E G + N E
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 78/229 (34%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TV--AYVPQVSWIF 196
+++ +P G +V ++G G GK++L + G+ P D+ + G TV AYV Q
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGETVKLAYVDQ----- 392
Query: 197 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--------- 245
RD + +P + +E+ G D+ ++G+R V
Sbjct: 393 ---SRDAL------DPNKTVWEEISG------------GLDIIQLGKREVPSRAYVGRFN 431
Query: 246 ------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR------QVFDR 287
+SGG++ RV +A+ + S +V + D+P + LD R F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 288 CIRGELSGKTRVLVTNQLHFLSQVDRI---ILVHEG---MVKEEGTFED 330
C V++++ FL DRI IL EG + EG + +
Sbjct: 492 CA---------VVISHDRWFL---DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDN 203
I G ++ IVG G GKT+ + G L P ++Y PQ + ++ TV D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE-GEVDPELKISYKPQYIKPDYDGTVED- 419
Query: 204 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYS 262
L S D+ S + +++ + + ++ V +SGG+ QRV++A +
Sbjct: 420 -LLRSI--------TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 263 NSDVFIFDDPLSALD 277
++D+++ D+P + LD
Sbjct: 471 DADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 304
+SGG++QRV++ARA DV D+P LD G ++ D G T +LVT+
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 305 LHFLSQVDRIILVHEGMVKEE 325
L ++ DR + + G ++EE
Sbjct: 207 LQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 816
+L G+ + + + ++G +G+GKS++L L + + G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 817 LR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------- 867
LR K +G + QS F L P ALE L +R S
Sbjct: 85 LRAKHVGFVFQS---------FMLIP--------TLNALENVELPALLRGESSRQSRNGA 127
Query: 868 ------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
LGL ++ S G++Q ++L+RA R +L DE T +D +T I
Sbjct: 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 922 ---TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
++ E + T++++ H L CDR L L +G++ E
Sbjct: 188 LLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 304
SGGQ QR+ +ARA+ + I D+P+SALD + QV + + ++ E+ G + + +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIA-- 219
Query: 305 LHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 334
H L+ V DR+++++ G E GT++++ +N
Sbjct: 220 -HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
Length = 331 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASAVIRGTVA 187
N+ ++IP G AI+G G GK++L+ + + P AS + +
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 188 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHDLDLLPGG----DVTEIGER 242
+ Q NAT +I RY T + D + + +T + ++
Sbjct: 85 LLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 243 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 301
V+ +SGGQ+QR +A + + + + D+P + LD + Q+ + EL+ + +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSELNREKGYTL 197
Query: 302 TNQLHFLSQVDR----IILVHEGMVKEEG 326
LH L+Q R +I + EG + +G
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 107 LLPNPPLTSGLPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 165
L P+ P G + RN WD R + +++ + G ++ + G G G+T L+
Sbjct: 245 LYPHEPHEIGDVILEARN-LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303
Query: 166 SAMLGELPPVSDASA--------------VIRGTVAYVPQ------------VSWIFNAT 199
A+ G P + + IR +A VP+ V +
Sbjct: 304 QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363
Query: 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259
V + F + A + I +++Q L + IG +SGG +Q+ +A+
Sbjct: 364 VLKSFCFKMRIDAAAELQIIG-SAIQR-LKVKTASPFLPIG----RLSGGNQQKAVLAKM 417
Query: 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVH 318
+ +N V I D+P +D +++ + G ++V+++L L DR++++
Sbjct: 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 319 EGMVKEEGTFEDLSNNGELFQKLMENA 345
EG +K D N+ ++++ A
Sbjct: 478 EGKLK-----GDFVNHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--------------PVSDAS 179
+ P L + + + G +V ++G G G ++L+ A+ P + +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 180 AVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
G + YV + F TVR+ + F + G +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK-------GNEFV- 116
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
RG ISGG+++RVS+A A+ S + V +D+ LD+
Sbjct: 117 ---RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS 193
+ L +I+L G+ + ++G G GK++L+ M G + +A V Y+PQ
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 194 WI-FNATVRDNILFG---------------SAF------------EPARYEKAIDVTSLQ 225
+ TVR+N+ G + F E A ++ ID
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA- 136
Query: 226 HDLDL----------LPGGD--VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273
DLD P D VT +SGG+++RV++ R + S D+ + D+P
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-------KLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 274 SALDA 278
+ LDA
Sbjct: 190 NHLDA 194
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 835
+VG GAGKS++L + + G I G + + +L + + Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQ-------- 80
Query: 836 RFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888
PF+ +W L R L + + +L LD ++ + S G+ Q
Sbjct: 81 --QTPPFAMP----VWHYLTLHQPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQR 133
Query: 889 LSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA-HRLN 940
+ L+ +L+ ++L+LDE ++DV + + + + + ++++ H LN
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 941 -TIIDCDRILLLDSGRVLEYDTPEELLSNE 969
T+ R LL G++L EE+L+
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQ 304
+SGGQ+QR+ +ARA+ D+ + D+P SALD Q+ + EL T ++VT
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF--ELKKNYTIIIVT-- 219
Query: 305 LHFLSQVDRI 314
H + Q R
Sbjct: 220 -HNMQQAARA 228
|
Length = 267 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAH 937
E S G++ L+L++ LL +L+LDE T +D+ + +AL + ++E T+++++H
Sbjct: 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALKE--YPGTVILVSH 125
Query: 938 -R--LNTIIDCDRILLLDSGR 955
R L+ + +I+ L+ G+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826
+I S+ +GI+G G GK++ + L +++ + G I I+ ++ K I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKAD 73
Query: 827 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886
+ GTVR D S + + + ++ + LD +V E S G+
Sbjct: 74 ----YEGTVR---DLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPE----LSGGEL 121
Query: 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 937
Q ++++ L + + I +LDE +A +DV + K IR E T ++ H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVP 190
A +P + ++L + G ++A+VGG+G GK+ +A LG LP +A V+ P
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 191 -QVSWIFNATVRDNILFGSAFEPAR------------YEKAIDVTSLQHDLDLLPGGDVT 237
+ AT+ N SAF P K D +L L+ + +
Sbjct: 74 CALRGRKIATIMQNPR--SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 238 EIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
+ + +SGG QR+ +A A+ + I D+P + LD ++ D
Sbjct: 132 RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
|
Length = 254 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-04
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 72/237 (30%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 820
LSF P K+G++G GAGKS TL RI + G D G K+
Sbjct: 28 LSFF--PGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFEGEARPAPGIKV 72
Query: 821 LGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--ERAHLK 860
G +PQ P L TVR N LD F+E DAD +AL E+ L+
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF-DALAAEQGELQ 130
Query: 861 DAI-RRNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKILVLDEA 907
+ I ++ LD+Q+ A + S G+R+ ++L R LL + +L+LDE
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDSGR 955
T +D + A +++ + ++ T++ + H DR IL LD GR
Sbjct: 191 TNHLDAESVAWLEQFLH-DYPG-TVVAVTH--------DRYFLDNVAGWILELDRGR 237
|
Length = 556 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG-----FDIAKFGLM 815
+SF + P + +GIVG +G+GK+++LN L + + G + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 816 DLRKIL----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864
+ R++L G + Q P V G + L D+ RA D +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI-----RATAGDWLE 136
Query: 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQ 920
R + ++ + FS G +Q L ++R L+ +++ +DE T +DV A L++
Sbjct: 137 RVEIDAA-RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 921 KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 958
+RE ++I+ H L + R+L++ GRV+E
Sbjct: 196 GLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------------LGELPPVSDA 178
P L N++L + G VA+ G +G GK++L+ ++ G ++ A
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 179 S-----AVIRGTVAYV-------PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
S V R T+ YV P+VS + + G E AR + L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSAL-EVVAEPLLERGVPREAARARARELLARLNI 138
Query: 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
L T SGG++QRV++AR ++ + + D+P ++LDA
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 303
+SGG +QRV +A A+ V I D+P +ALD + Q+ + ++ E+S + +T+
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV-IFITH 227
Query: 304 QLHFLSQV-DRIILVHEGMVKEEGTFEDL 331
+ ++++ DR++++++G E G+ E +
Sbjct: 228 DMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 69/264 (26%)
Query: 676 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP-SEAPLVIESNRP 734
F G+L L T +L+ A +A+ L E++ ++LP + P
Sbjct: 200 DFVQFAGVLADCTLAETGEREEILQQALVAQ--LAHSEQLEG-VQLPEPDEPSARH--AL 254
Query: 735 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794
P P I + V+ Y P+LH LS+ + P + IVG GAGKS++L+
Sbjct: 255 PANEPR---IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----- 304
Query: 795 VELERGRILIDG-------FDIAKFG--------LMDLRKILGIIPQSPVL---FSGTVR 836
LI G D+ FG + D++K +G + S L S +VR
Sbjct: 305 --------LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356
Query: 837 -------------FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFS 882
+ + A W + LG+D + ++A + S
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDI-------------LGIDKRTADAPFHSLS 403
Query: 883 VGQRQLLSLSRALLRRSKILVLDE 906
GQ++L + RAL++ +L+LDE
Sbjct: 404 WGQQRLALIVRALVKHPTLLILDE 427
|
Length = 490 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVP 190
+R L +++L++ G ++ ++G G GK++L+ +LG + P D + R + YVP
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGKLRIGYVP 73
Query: 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE----IGERGVNI 246
Q ++ + T+ P + + + D+LP + I +
Sbjct: 74 QKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKTRVLVTNQ 304
SGG+ QRV +ARA+ + + + D+P +D + ++D +R EL ++V++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSHD 180
Query: 305 LH 306
LH
Sbjct: 181 LH 182
|
Length = 251 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI----AKFGL 814
P ++ +SFT+ + +G+ G GAG++ ++ L+ + G + +DG ++ + GL
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 815 M-------DLRK----ILGIIPQSPVLFSGTVRFN-----LDPFSEHSDADLWEALERAH 858
+ RK +LG+ +V+ N L FS + L A E+
Sbjct: 326 ANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFS-RAGGSLKHADEQQA 374
Query: 859 LKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 915
+ D IR ++ ++ + S G +Q ++++R L+ R K+L+LDE T VDV
Sbjct: 375 VSDFIRLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Query: 916 DALIQKTIREEFKSCTMLII--AHRLNTIID-CDRILLLDSGRV 956
I + I +FK+ + II + + ++ DRIL++ GR+
Sbjct: 431 KKEIYQLI-NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 8e-04
Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 44/163 (26%)
Query: 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 207
G ++ IVG G GKT+L A+ EL P I G + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL---------- 51
Query: 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
+G + + SG + R+++A A DV
Sbjct: 52 -----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQL 305
I D+ S LDA + L V++T
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLM 815
+ +S T+P I+G +G GK+++L + + + G IL DG +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 816 DLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 873
+RK + ++ QS LF+ V N+ P EH+ L L + + ++ ++GL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTV--MMKLEAVGLRGA 136
Query: 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CT 931
S G + +L+RA+ +++ DE D T ++ K I E + T
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 932 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
++++H + ++ D ++ +++ + + + L +N
Sbjct: 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 100 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 159
++ E+ + P P + + + Y+ E+ + +I++DI ++ A++G +G
Sbjct: 4 MVREKIEIAPFPEAKEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGC 58
Query: 160 GKTSLISAM--LGELPPVSDASAVI-----------------RGTVAYVPQVSWIFNATV 200
GK++ + ++ + +L P + + I R + V Q F ++
Sbjct: 59 GKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118
Query: 201 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSM 256
+NI + R + +D ++ L D E+ +R +++SGGQ+QR+ +
Sbjct: 119 YNNITHALKYAGERRKSVLD-EIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCI 175
Query: 257 ARAVYSNSDVFIFDDPLSALD 277
AR + V + D+P SALD
Sbjct: 176 ARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELP 173
++ L +NL + G + AI+G G GK++L + G EL
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 174 PVSDASAVIRGTVAYVPQVSWIFNAT-VRDNILFGSAFEPARYEKAIDV----TSLQHDL 228
P A A + Y ++ + N +R + +A AR E+ +D+ L+ L
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKL 127
Query: 229 DLLPGGDVTEIGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
LL G E R VN SGG+K+R + + + I D+ S LD + V +
Sbjct: 128 ALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 287 RCIRGELSGKTR--VLVTNQLHFLSQV--DRIILVHEGMVKEEGTFE 329
I L R +++T+ L+ + D + ++ +G + + G E
Sbjct: 186 -GI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 304
+SGG +Q+V++AR + + V I D+P +D ++++ + + G + +LV+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 305 L-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA-GK 347
+ L DRI+++HEG + E T E + +KLM A GK
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQ-----EKLMAAAVGK 494
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
PV L F + + + + G GAGK+++L L ++ +E G+I IDG + D
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRS 81
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI--RR------NSL-- 868
+ + + P L ADL LE H + RR ++L
Sbjct: 82 RFMAYLGHLPGL----------------KADL-STLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 869 -GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923
GL S GQ++ L+L+R L + + +LDE A +D+ L+ + I
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 58/239 (24%)
Query: 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPP--PGWPSSGSIKFEDVVLRYRPELPP 759
ASL ++ + A++R+G+ + ++ E P PG P I F D Y P P
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGY-PGGPL 523
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+ L+F I ++ +VG G GKS++L LI G +L+
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LISG---------ELQP 561
Query: 820 ILGIIPQSPVLFSGTVRFNLDPFSEH--------SDADLW---------EALERAHLKDA 862
G + +S VR + FS+H S+ L+ E RAHL
Sbjct: 562 SSGTVFRSA-----KVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ 920
+L L + +G GQ+ ++ ++ ++ IL+LDE + +D+ +ALIQ
Sbjct: 615 GVTGNLALQPMYTLSG-----GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 286
SGGQ+QR+ +ARA+ N V I D+ +SALD + Q+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS--- 179
A L ++ ++ G ++ +VG G GK++L++ M G LP P+ S
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAE 66
Query: 180 -AVIRGTVAYVPQVSWIFNATVRDNI-LFGSA-FEPARYEKAI-DVTSLQHDLDLLPGGD 235
A R ++ Q + F V + L A+ +V D L
Sbjct: 67 LARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG--- 121
Query: 236 VTEIGERGVN-ISGGQKQRVSMA-------RAVYSNSDVFIFDDPLSALDAHVGRQV-FD 286
R VN +SGG+ QRV +A + + + D+P+++LD V +Q D
Sbjct: 122 ------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALD 173
Query: 287 RCIRGELSGKTR-VLVTNQ-L-HFLSQVDRIILVHEG 320
R + EL + V++++ L H L DR+ L+ +G
Sbjct: 174 RLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 39/239 (16%)
Query: 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAVIR 183
+ +I+ +IP G +V +G G GK++ + + G L P S +R
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 184 --GTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEI 239
G V W + + +E + + +D L LDL +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD--FLTEILDLEG-----FL 150
Query: 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 299
+S GQ+ R +A A+ V D+P LD V Q R E + + +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--VNAQANIREFLKEYNEERQA 208
Query: 300 LVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 354
V H + DR++L+ +G + +GT +L E G +E+ E
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA----------QLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 31/238 (13%)
Query: 129 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------ 182
W + P L +NLD + + +VG G GK++L + G L P AV+
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPL 65
Query: 183 ----RGTVAYVPQVSWIFNATVRDNILFGS------AFEPARYEKAIDVTSLQHDLDLLP 232
RG +A QV+ +F + +F + AF + + D + L
Sbjct: 66 DYSKRGLLALRQQVATVFQDP--EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVD-EALT 122
Query: 233 GGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
D + + +S GQK+RV++A A+ + + D+P + LD Q+ R
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 292 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQ--KLMENAG 346
G ++ ++ + + ++ D + ++ +G + G GE+F + ME AG
Sbjct: 183 VAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG------APGEVFACTEAMEQAG 234
|
Length = 271 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
SGGQ+QR+++ARA+ + I D+P S+LD V Q+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
|
Length = 529 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 817
+ +S T+ + G+VG +G+GKS + + + + + R+ D L+ L
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80
Query: 818 ---RKILG----IIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL----------ERAHLK 860
RK++G +I Q P LDP SE L + + +R +
Sbjct: 81 RERRKLVGHNVSMIFQEPQSC-------LDP-SERVGRQLIQNIPAWTYKGRWWQRFGWR 132
Query: 861 DAIRRNSLGLDAQV---------SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911
+R ++ L +V + G+ Q + ++ AL + ++L+ DE T ++
Sbjct: 133 ---KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 912 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+ T A I + + + + T+L+I+H L I D+I +L G+ +E EEL++
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1128 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-179 Score=1674.80 Aligned_cols=954 Identities=52% Similarity=0.866 Sum_probs=863.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 19 YIFLILSLILQCNSFILNSIPVLVTVVSFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRME 97 (1128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~ 97 (1128)
..+||..++.+++.+++.++|+++++++|++|. ..++.+++..+|+++++|+.++.|+..+|..+..+.++.+|++|++
T Consensus 415 ~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~ 494 (1381)
T KOG0054|consen 415 KLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLK 494 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999 6688999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCC--CCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 98 EFLLAEEKILLPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 98 ~~l~~~~~~~~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
+||..+|....... +..+....++++|++|+|++.+..+.|+||||+|++|+++||||++|||||+||.+|+||++..
T Consensus 495 ~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~ 574 (1381)
T KOG0054|consen 495 EFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL 574 (1381)
T ss_pred HHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc
Confidence 99998875433322 2233445799999999999755567999999999999999999999999999999999999998
Q ss_pred CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 176 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 176 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
+| ...+++.+|||||+||++++||||||+||.++|+++|++++++|+|.+|++.+|.||.|+|||+|.+|||||||||+
T Consensus 575 sG-~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 575 SG-SVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred cc-eEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 86 56678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||||+|+++||||||||+||+|+++.++||++|+++.+++||+|+|||+++++++||+|++|++|+|.+.|+|+|+++.+
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~ 733 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSG 733 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcc
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHH
Q 001189 336 ELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKD 415 (1128)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~ 415 (1128)
..+.++..+........ ..............................+..+.....+.++|+++.|.++|++|+.|++
T Consensus 734 ~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~ 811 (1381)
T KOG0054|consen 734 GDFAELAHEEESEQEEE--ASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIK 811 (1381)
T ss_pred hhHHHHhhccchhhccc--cccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHH
Confidence 88777633221110000 0000000000000000000000000000001111113445567788999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 416 ALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 416 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
+.++++.+++++++.++.+.+..++++|+++|++...... .+..+|..+|+++++++.++.+++++++...+.++++
T Consensus 812 a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~ 891 (1381)
T KOG0054|consen 812 AAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASR 891 (1381)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877777888888999999999999999998865433 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
++|+.|+++++|+||+|||++|+|||+|||++|++.+|..+|..+..++..++.+++++++++++.|+++++++|+.+++
T Consensus 892 ~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~ 971 (1381)
T KOG0054|consen 892 KLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIY 971 (1381)
T ss_pred HHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
|..+.+|.+++|+++|+++.+|||+++|++|+++|+.|||||+.+++|...+...+|.+.++.+....+++|++++++++
T Consensus 972 ~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~i 1051 (1381)
T KOG0054|consen 972 YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELL 1051 (1381)
T ss_pred HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
++++++.++.++++..... ..++.+|++++|++++++.++++++....+|+.++|+||+.+|.++|+|.|...+..
T Consensus 1052 g~~~v~~~al~~vl~~~~~----~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~ 1127 (1381)
T KOG0054|consen 1052 GNLVVLIAALFAVLLPSGL----ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEES 1127 (1381)
T ss_pred HHHHHHHHHHHHHHccCCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCC
Confidence 9999999999988776542 126789999999999999999999999999999999999999999998866655555
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.||+.||..|.|+|+|++++|+++.++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||.++
T Consensus 1128 ~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1128 RPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI 1207 (1381)
T ss_pred CCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++++||+++++|||||.||+||+|+||||+.+++|+++|+||++|++++++.++|.|||+.|.|+|.|||-||||.+|||
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
|||+++++||+|||||+++|++|+..||++||+.|++||||.|+||++++.+||||+|||+|+|+|+|+|++|++++++.
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHh
Q 001189 973 FSKMVQS 979 (1128)
Q Consensus 973 ~~~~~~~ 979 (1128)
|++++.+
T Consensus 1368 f~~~l~~ 1374 (1381)
T KOG0054|consen 1368 FSSLLKE 1374 (1381)
T ss_pred HHHHHHH
Confidence 8855543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-173 Score=1711.52 Aligned_cols=1107 Identities=86% Similarity=1.297 Sum_probs=964.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 21 FLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
.++...+.+++.+++..+|+++.+++|++|.+.+|.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L 595 (1622)
T PLN03130 516 FRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL 595 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce
Q 001189 101 LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 180 (1128)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~ 180 (1128)
+.++....+.++.....+.|+++|++|+|+.++++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+.+
T Consensus 596 ~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 596 LAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred cCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 87654222121111222469999999999854457899999999999999999999999999999999999999984566
Q ss_pred eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 181 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 181 ~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
.++++|+||+|+||+|++||||||+||.++++++|++++++|+|.+|++.+|+||+|.|||+|.+|||||||||+||||+
T Consensus 676 ~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 676 VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 340 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 340 (1128)
|++|+||||||||||||++++++++++++....+++|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.|..
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~ 835 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQK 835 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHH
Confidence 99999999999999999999999999888766689999999999999999999999999999999999999988888888
Q ss_pred HHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhH
Q 001189 341 LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGL 420 (1128)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~ 420 (1128)
+.......++..++.... ........+.........+......++.+..+..+..+|+++.|.++|++|++|+++.|+.
T Consensus 836 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~ 914 (1622)
T PLN03130 836 LMENAGKMEEYVEENGEE-EDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGA 914 (1622)
T ss_pred HHHhcccccccccccccc-cccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccH
Confidence 776543211111100000 0000000000000000000000000001111222345677788999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 421 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+.++++++++++.+.+...+++|+++|.+..........+|..+|++++++..++.+++.+++...+.+++.++|.++++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~ 994 (1622)
T PLN03130 915 WVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667777777888888899999999998654333445678888999999999999999999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
+++++|+.||+++|+|+++|||++|++.+|..++..+..++..++.+++++++++++.++.+++++|++++++..+.+|.
T Consensus 995 ~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~ 1074 (1622)
T PLN03130 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQ 1074 (1622)
T ss_pred HHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888888888888889
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 660 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 660 (1128)
+..++.++.+..+++|+++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|++++++++++++++++
T Consensus 1075 ~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~ 1154 (1622)
T PLN03130 1075 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLT 1154 (1622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999888887777
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+...+.......+...+|++++|+..+..++.++.+.....+..+.+++|+.++.+.|+|.+...+...+++.||.
T Consensus 1155 ~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~ 1234 (1622)
T PLN03130 1155 ASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPS 1234 (1622)
T ss_pred HHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCC
Confidence 76666554433333445678999999999999999999999999999999999999999988876543333445567999
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.|.|+|+||+|+|+++.+++|+|+||+|+|||+||||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 99999999999998766689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|++|||||.||+||||+||+|+.+++|+++++++++++++++++++|.||||.++|+|.+||||||||+||||||+++|+
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
|||||||||+||.+|++.|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998778999999998
Q ss_pred chhhHHHHHHHhhCccchhhhhhhhhhcccchhhhhhcHHHHHhhhhhhhhccccCccchhhhhhhhhhHHhhhhhhhhh
Q 001189 981 GAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1060 (1128)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+..+.+.++..+.....+.....+....+.+.++....+|+.+++.+.+.++.+++.+++.+++++..++++++|+++.+
T Consensus 1475 ~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1554 (1622)
T PLN03130 1475 GAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVIT 1554 (1622)
T ss_pred ChhhhHHHHHHHhccccccccccchhcccchhhHHHhhhcccchhhhhhhhccccccchhccccCCchhhhhhhhhhHhH
Confidence 88776666665422222222233345566777887888888888888899999999999999999999999999999999
Q ss_pred hhhhccCCchHHHHHhhhcCccCchhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCccccCccCCC
Q 001189 1061 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1128 (1128)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1128)
+++|.+|+||+.+.+.+.++++++|+||+++|+|+||+++|+|++|||.||++|++++.++|||++||
T Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1622)
T PLN03130 1555 LQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622 (1622)
T ss_pred HHHhhccccccccchhhhhccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCCcCChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-152 Score=1513.50 Aligned_cols=966 Identities=76% Similarity=1.171 Sum_probs=831.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLL 101 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~ 101 (1128)
++...+.++..+++..+|.++.+++||+|.+.+|.+|++.+|+++++++.+..|+..+|..+..+.++++|++||.+|++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~ 596 (1495)
T PLN03232 517 RKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLL 596 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455566666667777888878899999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee
Q 001189 102 AEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 181 (1128)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~ 181 (1128)
.+++...+.++.......|+++|++|+|+.+.++++|+|+||++++|++++|+|++|||||||+++|+|+++|++|+...
T Consensus 597 ~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~ 676 (1495)
T PLN03232 597 SEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV 676 (1495)
T ss_pred CccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE
Confidence 76532211111112223699999999998544578999999999999999999999999999999999999999988888
Q ss_pred ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 182 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+++.|+||+|+||+|++||||||+||.++++++|++++++|++.+|++.+|+||+|.|||+|.+|||||||||+||||+|
T Consensus 677 ~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 677 IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred ecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
++|+||||||||||||++++++++++++....+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.|.++
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l 836 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL 836 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHH
Confidence 99999999999999999999999999887666899999999999999999999999999999999999999888888887
Q ss_pred HHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhHH
Q 001189 342 MENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLW 421 (1128)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~ 421 (1128)
.......++..++....+..... .+... .+..........+.+..+.....+|+++.|.++|++|++|+++.|+.+
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~ 912 (1495)
T PLN03232 837 MENAGKMDATQEVNTNDENILKL--GPTVT--IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLW 912 (1495)
T ss_pred HHhcccccccccccccccccccc--ccccc--ccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHH
Confidence 76543211110000000000000 00000 000000000000011111224456777889999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
.++++++++++.+++..++++|+++|.+..........+|+.+|++++++..++.+++.+++...+.+++.++|++++++
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 992 (1495)
T PLN03232 913 VVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNS 992 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888899999999875432223356788999999999999999999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
++++|+.||+++++|+++|||++|++.+|..++..+..++..++.++++++++.++.++.++.++|++++++..+.++.+
T Consensus 993 ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1495)
T PLN03232 993 ILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQS 1072 (1495)
T ss_pred HHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888877777777777777778887777777888889
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 661 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 661 (1128)
..++.++.+..+++|+++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|+.++++.++.+++++++
T Consensus 1073 ~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~ 1152 (1495)
T PLN03232 1073 TSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTA 1152 (1495)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888899999998888777666666
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCC
Q 001189 662 TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 741 (1128)
Q Consensus 662 ~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~ 741 (1128)
.+.+...+..+....+...+|++++++..+..++.++.+.+..++..+.+++|+.++.+.|+|.+...+...+++.||..
T Consensus 1153 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~ 1232 (1495)
T PLN03232 1153 TFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSR 1232 (1495)
T ss_pred HHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCC
Confidence 66555433322223446678888899999999999999999999999999999999999887754322233345579999
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 99999999999987666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||||||.+|+||||+||+|+.+++|+++++++++++++++++++|.||||.++++|.+||||||||+||||||+++|+|
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||||||+||++|++.|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.++
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988789999999887
Q ss_pred hhhHHHHHHH
Q 001189 982 AANAQYLRSL 991 (1128)
Q Consensus 982 ~~~~~~~~~~ 991 (1128)
..+.+.++..
T Consensus 1473 ~~~~~~~~~~ 1482 (1495)
T PLN03232 1473 PANAQYLSNL 1482 (1495)
T ss_pred hhhhHHHHHH
Confidence 7655544433
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-142 Score=1416.38 Aligned_cols=950 Identities=42% Similarity=0.703 Sum_probs=802.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 99 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~ 99 (1128)
++...+..+..+++...|+++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..+..+.++++|++||++|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~ 613 (1522)
T TIGR00957 534 KKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIF 613 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677888888888888776 3679999999999999999999999999999999999999999999
Q ss_pred HhccccccCC--CCCCC-CCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 100 LLAEEKILLP--NPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 100 l~~~~~~~~~--~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
++.++..... ..... .....++++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++
T Consensus 614 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~ 692 (1522)
T TIGR00957 614 LSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 692 (1522)
T ss_pred HcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 9876532211 01111 11136999999999974 23679999999999999999999999999999999999999988
Q ss_pred CCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 177 DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 177 g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|. +.+.++|+||||+||+|++||+|||.||.+++++++++++++|++.++++.+|+|++|.+|++|.+|||||||||+|
T Consensus 693 G~-i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaL 771 (1522)
T TIGR00957 693 GH-VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 771 (1522)
T ss_pred cE-EEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHH
Confidence 65 45678899999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc--cccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~--~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+|++|+++|||||||+||+++++++++.++. ...+++|+|+|||+++.+..||+|++|++|+++++|+++++.++
T Consensus 772 ARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 772 ARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 9999999999999999999999999999998874 23568999999999999999999999999999999999999987
Q ss_pred chHHHHHHHHhchhhhhh--hhc-c---cCccccC----C--C-----CCCCCC---CCCCCCCC---c---c-c-cccc
Q 001189 335 GELFQKLMENAGKMEEYV--EEK-E---DGETVDN----K--T-----SKPAAN---GVDNDLPK---E---A-S-DTRK 386 (1128)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~----~--~-----~~~~~~---~~~~~~~~---~---~-~-~~~~ 386 (1128)
.+.|.++.......++.. ++. . ..+..+. . . ...... ........ . . . ....
T Consensus 852 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1522)
T TIGR00957 852 DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAE 931 (1522)
T ss_pred chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 777777665322111000 000 0 0000000 0 0 000000 00000000 0 0 0 0000
Q ss_pred cccchhhhhhhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--CCCChhHHHHH
Q 001189 387 TKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTI 464 (1128)
Q Consensus 387 ~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i 464 (1128)
.+........+|.+..|.++|++|+.|+++.|.. .++++++++++...+..+.++|+++|.+.... ......+|..+
T Consensus 932 ~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~i 1010 (1522)
T TIGR00957 932 AKEETWKLMEADKAQTGQVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSV 1010 (1522)
T ss_pred cccchhhhHHHHHHhcCcccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHH
Confidence 0001112334566778999999999999998754 33344445556667778899999999975321 11223466778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
|++++++..++.++..++....+.+++.++|++++++++++|+.||+++++|+++|||++|++.+|..++..+..++..+
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~ 1090 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSL 1090 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888889999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHH
Q 001189 545 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 624 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~ 624 (1128)
+.+++.++++.+..++..++++|++++++.+..+|.+..+++++.+...++|+++++.|+++|+.+||+|+.++++.+.+
T Consensus 1091 ~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~ 1170 (1522)
T TIGR00957 1091 FNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQS 1170 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHH
Confidence 88888888888888887777778877788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 625 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 704 (1128)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 704 (1128)
.+..+...+..+.....++|+.+++++++.+++.+++.+.+...+.. ..+.+|+++.|+..+..++..+.+.+..
T Consensus 1171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957 1171 DLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSL-----SAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999887776665555555433322 2467888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCH
Q 001189 705 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 784 (1128)
Q Consensus 705 ~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGK 784 (1128)
++..+.|++|+.++.+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||||||||
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGK 1325 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGK 1325 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999999988877543223334556799999999999999998765689999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHH
Q 001189 785 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864 (1128)
Q Consensus 785 STll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~ 864 (1128)
|||+++|+|+++|++|+|.|||+||++++++++|++|++|||||.+|+||||+||+|+++++|++++++++.+++++++.
T Consensus 1326 STL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~ 1405 (1522)
T TIGR00957 1326 SSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVS 1405 (1522)
T ss_pred HHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh
Q 001189 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944 (1128)
Q Consensus 865 ~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~ 944 (1128)
++|.||||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+
T Consensus 1406 ~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred hCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 945 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 945 ~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||||+||++|+|+|+|+|+||+++ ++.|+++++++
T Consensus 1486 ~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1486 YTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 999999999999999999999987 47899988764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-137 Score=1368.23 Aligned_cols=961 Identities=36% Similarity=0.597 Sum_probs=790.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 21 FLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
.++...+..+..++++.+|.++++++|++|.+.++.||++.+|+++++++.++.|+..+|..+..+.++.+|++||++||
T Consensus 462 l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 462 LRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccC------C-------------------C-------C---C-------------------------CCCCCCcE
Q 001189 101 LAEEKILL------P-------------------N-------P---P-------------------------LTSGLPAI 120 (1128)
Q Consensus 101 ~~~~~~~~------~-------------------~-------~---~-------------------------~~~~~~~i 120 (1128)
..++.... . + + + .....+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 87552100 0 0 0 0 00001246
Q ss_pred EEEeEEEEeCCC-------------------------------------CCCCceeeeeEEeeCCCEEEEEcCCCccHHH
Q 001189 121 SIRNGYFSWDSK-------------------------------------AERPTLLNINLDIPVGSLVAIVGGTGEGKTS 163 (1128)
Q Consensus 121 ~~~~~~f~~~~~-------------------------------------~~~~~L~~isl~i~~G~~~~ivG~~GsGKST 163 (1128)
.++|++|.|+.. +++++|+|+||+|++|++++|+|+|||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 677777765310 1346899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 164 LISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 164 Ll~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
|+++|+|+++|++|.+ .+++.||||||+||++++||+|||.|+.+.+.+++.++++.|++.++++.+|+|++|.+|++|
T Consensus 702 LL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g 780 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780 (1560)
T ss_pred HHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCC
Confidence 9999999999998754 467789999999999999999999999888888899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
.+|||||||||+||||||++|++||||||||+||+++.+++++.++....+|+|+|+|||+++.++.||+|++|++|+++
T Consensus 781 ~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVE 860 (1560)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987765555789999999999999999999999999999
Q ss_pred eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCc--cccCCCCC---CCCCCCCCCCCCccccccccccchhhhhhhh
Q 001189 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE--TVDNKTSK---PAANGVDNDLPKEASDTRKTKEGKSVLIKQE 398 (1128)
Q Consensus 324 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1128)
++|+++++.+.+ .+..+........+..+.....+ ..+..... ..........................+...|
T Consensus 861 ~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 939 (1560)
T PTZ00243 861 FSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTRE 939 (1560)
T ss_pred EecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHH
Confidence 999999998754 45555432111000000000000 00000000 0000000000000000000001112234556
Q ss_pred hhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 399 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 399 ~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
++..|.++|++|++|++.+|+...++++++++++.+.+....++|+++|.+.... .....|+.+|+++.++.++..++
T Consensus 940 ~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~~~~~l 1017 (1560)
T PTZ00243 940 EKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGTFSVPL 1017 (1560)
T ss_pred HHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999877666666666777788888899999999875321 23346777888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 558 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1128)
+.+.....+.++++++|+.++++++++|+.||++++.|+++|||++|++.+|..++..+..++..++.+++.++++.+..
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~ 1097 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQ 1097 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888899999999999999999999999999999999999999999999888888888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 559 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 638 (1128)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1128)
++.+++++|++++++.+..+|.+..++.++.....++|+++++.|+++|+.+||+|+.++.+.+.+.+..+...+..+..
T Consensus 1098 p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~ 1177 (1560)
T PTZ00243 1098 PFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLE 1177 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777677777788899999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001189 639 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 718 (1128)
Q Consensus 639 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~ 718 (1128)
...++|+.++++++..++.++++.+.+....... .....+.+++++.++..+..++.++.+.+..++..+.+++|+.++
T Consensus 1178 ~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1256 (1560)
T PTZ00243 1178 NVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRA-TSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776654443333322110000 001145678888888999999999999999999999999999999
Q ss_pred hcC-CCCCcccc-----------------------CCCCCC---CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCC
Q 001189 719 IEL-PSEAPLVI-----------------------ESNRPP---PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPS 771 (1128)
Q Consensus 719 ~~~-~~e~~~~~-----------------------~~~~~~---~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~G 771 (1128)
.+. |+|+.... +...++ +.||..|.|+|+||+|+|+++.+++|+||||+|+||
T Consensus 1257 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G 1336 (1560)
T PTZ00243 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPR 1336 (1560)
T ss_pred HhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCC
Confidence 863 33321100 011111 235567899999999999876667999999999999
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHH
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW 851 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~ 851 (1128)
|+||||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+||||+||+++.+++|++++
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~-p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
++++.+++++++.++|.||||.++++|.+|||||||||||||||+++ |+|||||||||+||++|++.|++.|++.++++
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~ 1496 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAY 1496 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhchhhHH
Q 001189 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 986 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 986 (1128)
|||+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++..+..+.+
T Consensus 1497 TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~ 1552 (1560)
T PTZ00243 1497 TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAK 1552 (1560)
T ss_pred EEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhHHH
Confidence 99999999999999999999999999999999999987778999999887654433
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-137 Score=1364.35 Aligned_cols=952 Identities=30% Similarity=0.525 Sum_probs=788.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~-~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
++...+..+..+++...|.++++++|++|.+.++ ++++.+|+++++++.++.|+. .+|..+..+.++.+|++||++||
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL 376 (1490)
T TIGR01271 298 RKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFL 376 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666677777888888899999987755 789999999999999999985 79999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCcEEEEeEEEEeCCC-------------------------------CCCCceeeeeEEeeCCC
Q 001189 101 LAEEKILLPNPPLTSGLPAISIRNGYFSWDSK-------------------------------AERPTLLNINLDIPVGS 149 (1128)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~-------------------------------~~~~~L~~isl~i~~G~ 149 (1128)
..++....+. ......+.++|++|+|+.. ..+++|+|+||+|++|+
T Consensus 377 ~~~e~~~~~~---~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~ 453 (1490)
T TIGR01271 377 CKEEYKTLEY---NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQ 453 (1490)
T ss_pred cCcccccccc---cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCC
Confidence 8776422111 1112359999999999631 02468999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD 229 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~ 229 (1128)
+++|+||||||||||+++|+|+++|++|. +.+.+.|+||+|+||+|++||+|||+||.++++++|.+++++|+|.++++
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~-i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~ 532 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGK-IKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999865 45778899999999999999999999998888889999999999999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh
Q 001189 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 230 ~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 309 (1128)
.+|+|+.|.+|++|.+|||||||||+||||+|++|++||||||||+||+++++++++.++....+++|+|+|||+++.+.
T Consensus 533 ~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK 612 (1490)
T ss_pred hccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887665557899999999999999
Q ss_pred cCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhchhh--------------------h--h-----hhh--c----c
Q 001189 310 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME--------------------E--Y-----VEE--K----E 356 (1128)
Q Consensus 310 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~--------------------~--~-----~~~--~----~ 356 (1128)
.||+|++|++|++++.|+++++....+.|........... . . .++ . +
T Consensus 613 ~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1490)
T TIGR01271 613 KADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQP 692 (1490)
T ss_pred hCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999876555554442100000 0 0 000 0 0
Q ss_pred cCcc-c--------------------------------cCCCCCCCCCC-----C----CCCCC----------------
Q 001189 357 DGET-V--------------------------------DNKTSKPAANG-----V----DNDLP---------------- 378 (1128)
Q Consensus 357 ~~~~-~--------------------------------~~~~~~~~~~~-----~----~~~~~---------------- 378 (1128)
..+. . ......+.... . ....+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1490)
T TIGR01271 693 PPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRR 772 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccc
Confidence 0000 0 00000000000 0 00000
Q ss_pred -------Ccc------c-----c--------------c------cc-ccc-----------c--hhhhhhhhhhhcccch
Q 001189 379 -------KEA------S-----D--------------T------RK-TKE-----------G--KSVLIKQEERETGVVS 406 (1128)
Q Consensus 379 -------~~~------~-----~--------------~------~~-~~~-----------~--~~~~~~~~~~~~g~~~ 406 (1128)
... . . . +. ... . ......+|++..|.++
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 852 (1490)
T TIGR01271 773 QSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTT 852 (1490)
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCccc
Confidence 000 0 0 0 00 000 0 0112344566788999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cc-C-----------CCChhHH-HHHHH
Q 001189 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K-----------THGPLFY-NTIYS 466 (1128)
Q Consensus 407 ~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------~~-~-----------~~~~~~~-~~i~~ 466 (1128)
|++|++|+++.|+++.++++++++++.+++..+.++|+.+|.... .. . .....+| .++|.
T Consensus 853 ~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1490)
T TIGR01271 853 WNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYV 932 (1490)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHH
Confidence 999999999988766666666667777888889999999886421 00 0 0011223 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.+.++..++.+++.+++...+.+++.++|.+++++++++|+.||+++|+|+++|||++|++.+|..++..+..++..++.
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 933 GTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667778888889999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+++.+++++++.++++++++|++++++.+..+|.+..+++++.+..+++|+++++.|+++|+.+||+|++++++.+++.+
T Consensus 1013 ~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence 88888888888888877788888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 706 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e 706 (1128)
..+...+..+......+|+.+++++++.+++..++.+++.... . ..+.+|++++++..+...+.++.+.+..++
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~-~-----~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-D-----GEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888889999999988766554443333332211 1 134578888888889999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccccC--------------CCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCc
Q 001189 707 NSLNAVERVGNYIELPSEAPLVIE--------------SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 707 ~~~~a~~Ri~~~~~~~~e~~~~~~--------------~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge 772 (1128)
..+.+++|+.+|.+.|+|.+...+ ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCC
Confidence 999999999999988776432111 112345799999999999999998766789999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+||||||||||||||+++|+|+++ ++|+|.|||+|+++++++++|++|+||||+|.+|+||||+||+|+.+++|+++++
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 999999999999999999999997 7999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEE
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 932 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tv 932 (1128)
+|+++++++++.++|.||||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++|||
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhchhhHH
Q 001189 933 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 986 (1128)
Q Consensus 933 i~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 986 (1128)
|+||||++++.+||||+||++|+|+|.|+|++|+++ ++.|+++++..++.+..
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~~~ 1458 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLKLF 1458 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhccc
Confidence 999999999999999999999999999999999974 68999999887665443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-133 Score=1231.20 Aligned_cols=917 Identities=25% Similarity=0.357 Sum_probs=685.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-CCCCC
Q 001189 40 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSG 116 (1128)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~ 116 (1128)
.....+|||..++..+..+++.+++++...-.....+.+....+..+..+++|+.+|.+.++..+...... . .....
T Consensus 268 ~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~ 347 (1228)
T KOG0055|consen 268 SYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSI 347 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCccccc
Confidence 34456889988888899999999988866666666777877889999999999999999998765432211 1 11122
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecC
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRG 184 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~ 184 (1128)
...|+|+||+|+||.+++.++|+|+||+|++|+.++|||+|||||||++++|.|+|+|++|.+. ++|+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 3469999999999998888999999999999999999999999999999999999999998643 3577
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+||.|.|+|.||++||+|||.+|++ .+.+++.++++.++.++++..+|+|++|.+||+|.+|||||||||||||||+++
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 8999999999999999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|+||||||||||||+++++.+.+ ++....+|+|.|+|+||++.+++||+|++|++|+|++.|+|+||++.++.|.++++
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~-ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~ 586 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQE-ALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR 586 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHH-HHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence 99999999999999999887765 56767789999999999999999999999999999999999999999999999987
Q ss_pred Hhchhhhhhh-hcccCccccCCCC-CCCCCCCCCCC---CCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhh
Q 001189 344 NAGKMEEYVE-EKEDGETVDNKTS-KPAANGVDNDL---PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALG 418 (1128)
Q Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g 418 (1128)
.+........ +..+........+ ........... .......+...+........+. ...++..+..+.+.
T Consensus 587 ~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~s~~~i~k~~~p-- 661 (1228)
T KOG0055|consen 587 LQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED---EKVSFWRIFKLNKP-- 661 (1228)
T ss_pred HHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc---ccccHHHHHHhccc--
Confidence 6532221110 0000000000000 00000000000 0000000000000000000000 11222222222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcccc-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 419 GLWVVLILLLCYFLTETLRVSSSTW----LSYWTDQSS-LKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 493 (1128)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~~~~~----l~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1128)
.++++++..++.++.........+. +..+..... ........|..+|+++++...+..+++.|++.+.+.+...+
T Consensus 662 e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R 741 (1228)
T KOG0055|consen 662 EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKR 741 (1228)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333322222222222 222221111 11112345889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccc--CChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 494 LHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL---WAIMPL 568 (1128)
Q Consensus 494 l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 568 (1128)
+|.++|+++++.++.|||. |+ |.+.+|+.+|...+...+...+..++..+..++..+++.++.+|-+. .++.|+
T Consensus 742 ~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pl 820 (1228)
T KOG0055|consen 742 LRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 (1228)
T ss_pred HHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 66 99999999999999888877777777777777777766666665433 345565
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 569 LLLFYAAYLYYQ-STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI 647 (1128)
Q Consensus 569 l~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 647 (1128)
+++....+..+. ...++.+.... .......|++.+++||++|+.++++.+.+.+.++...+...... .|.++
T Consensus 821 l~~~~~~~~~~~~~~~~~~~~~~~----ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl 893 (1228)
T KOG0055|consen 821 LILSGYLQKKFLKGFSKDDKKAYE----EASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG---LISGL 893 (1228)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 555444443332 22222222111 12346689999999999999999999999988887766655433 22232
Q ss_pred HHHH-------HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001189 648 RLEI-------VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 720 (1128)
Q Consensus 648 ~l~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~ 720 (1128)
...+ ..++.+|+++.+ ...+.......+.....+.++ +..+.+ .............|+.++.++++
T Consensus 894 ~f~~sqs~~~~~~A~~f~~G~~L--i~~g~~~~~~~~~vf~~l~~t-a~~~~~----~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 894 GFGFSQSLLFFVYALSFWYGARL--ISNGEMTFEDVFRVFMALSFT-AMALGQ----ASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH--HhcCCcCHHHHHHHHHHHHHH-HHHHHH----HHhhCcHHHHHHHHHHHHHHHhc
Confidence 2222 222333333222 233333333333222222111 111222 22233344556778899999988
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 721 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 721 ~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
.++..+...+.. ....+..|.|+|+||+|+||.. ..++|+|+||+|++|+.+||||||||||||++.+|.|+|+|++
T Consensus 967 r~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 967 RKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred CCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 665322211111 1112357899999999999732 2479999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 800 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
|.|.|||.||++++++.||++||+|.|+|.||++||||||.++. +.+.+|+.+|++.+++++||.++|.||||.|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999873 46899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~ 958 (1128)
.+||||||||+|||||++|||+||||||+||+||.++++.+|++|++...++|+|+|+||++++++||.|.|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchHHHHHhh
Q 001189 959 YDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+|+|++|++ ..|.|+++++.+
T Consensus 1205 ~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1205 QGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred cccHHHHHh-CCCchHHHhhhc
Confidence 999999999 567899888753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-118 Score=1175.33 Aligned_cols=929 Identities=20% Similarity=0.286 Sum_probs=661.8
Q ss_pred HHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-C
Q 001189 42 VTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P 112 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~--------~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~ 112 (1128)
+.++++|.+.+..| .++++.+++++........++..+...+..+..+.+|++||.++++.+++...... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~ 375 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK 375 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence 45567888888764 57888888776555444455556666788999999999999999987653221111 0
Q ss_pred CCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------
Q 001189 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 181 (1128)
Q Consensus 113 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------- 181 (1128)
..+....|+++|++|+|+.++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 376 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 376 KLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH
Confidence 011123699999999998544457999999999999999999999999999999999999999876432
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC--------------------------------------------------
Q 001189 182 --IRGTVAYVPQVSWIFNATVRDNILFGSA-------------------------------------------------- 209 (1128)
Q Consensus 182 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-------------------------------------------------- 209 (1128)
+|+.||||+|+|.+|++||+|||.+|..
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2456999999999999999999998731
Q ss_pred --------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 210 --------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 210 --------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||++++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 234678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCC----------------------------------------
Q 001189 282 RQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG---------------------------------------- 320 (1128)
Q Consensus 282 ~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G---------------------------------------- 320 (1128)
+.+.+.+.+... +|+|+|+||||++.++.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNN 695 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999876654332 589999999999999999999999986
Q ss_pred -------eEeeecChhHHhh-cchHHHHHHHHhchhhhhhhhc--ccCc--cccCCC-CCCCC--CCCC-----CCCC-C
Q 001189 321 -------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVEEK--EDGE--TVDNKT-SKPAA--NGVD-----NDLP-K 379 (1128)
Q Consensus 321 -------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~--~~~~-----~~~~-~ 379 (1128)
+|+++|+|++|++ ..+.|..+...+.......... .... ...... ..+.. .... .... .
T Consensus 696 ~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1466)
T PTZ00265 696 KINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS 775 (1466)
T ss_pred ccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 5788888886543221100000 0000 000000 00000 0000 0000 0
Q ss_pred -c-cccc--c--ccccchhhhhhhhhh---hc-ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001189 380 -E-ASDT--R--KTKEGKSVLIKQEER---ET-GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 449 (1128)
Q Consensus 380 -~-~~~~--~--~~~~~~~~~~~~~~~---~~-g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 449 (1128)
. .... . .....+......+.. .. ....+..+.++..... ..+++.+++.++...+....++.++.+.+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 853 (1466)
T PTZ00265 776 NKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYK--KDVTIIALSILVAGGLYPVFALLYAKYVS 853 (1466)
T ss_pred cccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0 000000000000000 00 0001111122221111 11222233333334444444444554443
Q ss_pred ccccC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHhh
Q 001189 450 QSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAK 524 (1128)
Q Consensus 450 ~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~ 524 (1128)
..... ......|..++++++++..++.+++.++....+.+...+++..+|+++++.|+.||++ +++|++++|+++
T Consensus 854 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~ 933 (1466)
T PTZ00265 854 TLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933 (1466)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHH
Confidence 22110 1112345666777777888888999999999999999999999999999999999986 889999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------
Q 001189 525 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST--AREVKRL------------- 589 (1128)
Q Consensus 525 D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~------------- 589 (1128)
|+..+...+...+..++..++.++..++++++++|...++++|+++++...+....+. .++.++.
T Consensus 934 Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1466)
T PTZ00265 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Confidence 9999988776666666666666666666666666655544444332222111111110 1111111
Q ss_pred HHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001189 590 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI----VGGLMIWLTATFAV 665 (1128)
Q Consensus 590 ~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~----~~~~~~~~~~~~~v 665 (1128)
.....+.....+.|++.|+++||+|+.++++.+++.+..+...+..........+......+ ..++++|+++ +.+
T Consensus 1014 ~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~lv 1092 (1466)
T PTZ00265 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGS-FLI 1092 (1466)
T ss_pred hHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 11123345678899999999999999999999888887776655444332222222211211 1222233333 222
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCC-CCCCCCCccE
Q 001189 666 VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-PPGWPSSGSI 744 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~-~~~~p~~g~i 744 (1128)
. .+..+... .+.++ .+.......+..+...+........+.+|+.++++.+++.+........ ....+..|.|
T Consensus 1093 ~-~g~it~g~----l~~~~-~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1093 R-RGTILVDD----FMKSL-FTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred H-cCCCCHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 2 22222111 11111 1111112234445566677788899999999998765432211111110 0011234789
Q ss_pred EEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--------------------------
Q 001189 745 KFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------------------------- 797 (1128)
Q Consensus 745 ~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-------------------------- 797 (1128)
+|+||+|+|++. ..++|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999742 24799999999999999999999999999999999999999
Q ss_pred ----------------------------CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHH
Q 001189 798 ----------------------------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDA 848 (1128)
Q Consensus 798 ----------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~ 848 (1128)
++|+|++||+|++++++.++|++|+||||+|.||++||||||.++. +.+++
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 6999999999999999999999999999999999999999999874 47899
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 927 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~- 927 (1128)
++++|++.++++++|.++|.||||.||++|.+|||||||||||||||+++|+|||||||||+||+++++.|+++|++..
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~ 1406 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD 1406 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -CCcEEEEeecCchhhhhcCEEEEEeC----CEEE-EecChhHHhhcCCCchHHHHHh
Q 001189 928 -KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 928 -~~~Tvi~vtH~l~~~~~~D~i~vl~~----G~i~-~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+++|+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|+++++.
T Consensus 1407 ~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1407 KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 68999999999999999999999999 9955 8999999998656788888764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-82 Score=738.74 Aligned_cols=545 Identities=26% Similarity=0.384 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc-CCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
..+++.++.....++.|.+++..+|.... ..... .-...+..++.+++.+++.++.+++.+.+.+...++|..+|++
T Consensus 151 ~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~s 230 (716)
T KOG0058|consen 151 AAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRS 230 (716)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555566655554443222 11111 1223455666778888999999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
++++.+.|||.+.+|++++|++.|...+.+.++..++..+......++.++++++++|-...+.+..+.+...+..+|.+
T Consensus 231 il~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~ 310 (716)
T KOG0058|consen 231 LLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGK 310 (716)
T ss_pred HHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888875544433333333444445555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG---L-MI 657 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~---~-~~ 657 (1128)
..|++.+...++-+.......|.+.+++|+|+|+.|.+..+++.+.++...+...........+....++.+. + +.
T Consensus 311 ~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL 390 (716)
T KOG0058|consen 311 YLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSIL 390 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHH
Confidence 5555555555555566677889999999999999999888888777776555543333222222222222221 1 22
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 658 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 658 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++++.+ +. .+.++ .+.+.-.+.|...+...+..+...++.+.....|.+|+.++++.++.-+.. +.. .+.
T Consensus 391 ~~Gg~L-v~-~g~mt-----~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~-~p~ 460 (716)
T KOG0058|consen 391 FYGGHL-VL-TGSLT-----SGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTL-APD 460 (716)
T ss_pred Hhccch-hh-cCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccc-ccc
Confidence 222222 21 11111 122223344555666777777888888889999999999999876654332 111 112
Q ss_pred CCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 738 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
...|.|+|+||+|+|+.. ..++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.+||+||+++++..
T Consensus 461 -~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 461 -HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred -cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence 457899999999999743 247999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++||+|.|||.||++||+|||.++. ..+++++..|++.+++++||..+|+||||.|||+|.+||||||||+||||||
T Consensus 540 lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 999999999999999999999998765 4689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
++||+||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+|+|.|+|+||++++++.|++
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~ 699 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAK 699 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHhh
Q 001189 976 MVQST 980 (1128)
Q Consensus 976 ~~~~~ 980 (1128)
+++..
T Consensus 700 Lv~~q 704 (716)
T KOG0058|consen 700 LVQRQ 704 (716)
T ss_pred HHHHh
Confidence 98764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-76 Score=717.17 Aligned_cols=543 Identities=29% Similarity=0.431 Sum_probs=436.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
.+.-+++..++.+.+...+|.+.....|..-..... ...+ ...+++..+...++.+++++++...+.+....+-.+++
T Consensus 155 ~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 155 LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445556666777778888888877775443332 2222 23445556778899999999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
+|+++.|+.||+++++|++++|+ +|++.|...+.......+..+...+..++++.+.++...|+.+..++++.++....
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~ 313 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 57777777776655555555555555555555556555555444444444443333
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM----GANRWLAIRLEIVGGL 655 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~wl~~~l~~~~~~ 655 (1128)
.+..++..+......+...+.+.|++.|+.++|+.+.|.++...+.+.++...+..+... ..+.+.++...+...+
T Consensus 314 ~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~ 393 (709)
T COG2274 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL 393 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444556778999999999999999999988888877777666555444 3444444444555555
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 656 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 656 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
++|+++....-.. .++|.++++. ..++.++..+...+...+....+.+|+.++++.|+|.+...
T Consensus 394 iL~~G~~lVl~~~----------lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~--- 460 (709)
T COG2274 394 ILWFGAILVLEGE----------LTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK--- 460 (709)
T ss_pred HHHHHHHHHhcCC----------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---
Confidence 5566555443221 2345555443 34667777778888889999999999999999988754321
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.+...++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||.|++.+
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12344567799999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++..+|++|||||||+.+|+|||+||+.+... .+++++.+|++.++++++|.++|.||+|.++|+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998765 47799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
||||+++|+|||||||||+||+++++.|.+.|.+...++|+|+||||++++++||||+||++|+|+++|+|+||++. ++
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred chHHHHHh
Q 001189 972 SFSKMVQS 979 (1128)
Q Consensus 972 ~~~~~~~~ 979 (1128)
.|+++++.
T Consensus 700 ~y~~l~~~ 707 (709)
T COG2274 700 LYARLYQQ 707 (709)
T ss_pred hHHHHHhc
Confidence 77777653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-72 Score=690.14 Aligned_cols=548 Identities=20% Similarity=0.255 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-C-CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSL-K-THG-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
.+++.++...+....++.+....+.... . ... ...+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 106 (588)
T PRK11174 27 SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKL 106 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666555543211 1 111 112233344445566677788888888899999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..||+++++|++++|+++|++.++..+...+..++..++..+..++++..+++...++++.++++.+.+...+.+.
T Consensus 107 l~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 186 (588)
T PRK11174 107 QQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMG 186 (588)
T ss_pred HhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666666666555555555555565544443333222222223333333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--- 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~--- 659 (1128)
.++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........+......++..+...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
T PRK11174 187 AADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAV 266 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445567788999999999999999999998888877666655444333222222222222222211111
Q ss_pred HHHHHHHhcCCcchh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQ-EAFA-STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~-~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
...+.+...-+.+.. ..+. ...-..+.+...+..++..+...+........+.+|+.++++.+++.+.. ...+. .
T Consensus 267 ~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~ 343 (588)
T PRK11174 267 YFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-A 343 (588)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-C
Confidence 111111111111100 0001 11111123334456677777777778888899999999999876543211 11000 1
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++|||||||||||||+++|+|++ |++|+|.+||+|+++++++++
T Consensus 344 ~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 344 SNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred CCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHH
Confidence 1123569999999877644 57999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|++|++||||||.++. +.++++++++++.++++++++++|.|+||.+||+|.+||||||||++||||++
T Consensus 422 r~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501 (588)
T ss_pred HhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 57999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++. +.|+++
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~-~~y~~l 580 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATL 580 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc-hHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999864 467777
Q ss_pred HHh
Q 001189 977 VQS 979 (1128)
Q Consensus 977 ~~~ 979 (1128)
+..
T Consensus 581 ~~~ 583 (588)
T PRK11174 581 LAH 583 (588)
T ss_pred HHH
Confidence 654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=685.35 Aligned_cols=539 Identities=31% Similarity=0.435 Sum_probs=408.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 508 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ 508 (1128)
+.++...+....+.++....+...........+...++++.++..++.+...++....+.+...+++.++++++++.|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~ 101 (567)
T COG1132 22 LLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLS 101 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33344445555555555444433211111222333444444556666677777777777999999999999999999999
Q ss_pred ccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 509 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 588 (1128)
Q Consensus 509 ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 588 (1128)
+|+++++|++++|+++|++.++..+......+...+..+++.++++....+...++++..++++......+.+..++..+
T Consensus 102 ~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T COG1132 102 FFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSR 181 (567)
T ss_pred HhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776654444434555555555666665544433333222222222233323355555
Q ss_pred HHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001189 589 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL----AIRLEIVGGLMIWLTATFA 664 (1128)
Q Consensus 589 ~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl----~~~l~~~~~~~~~~~~~~~ 664 (1128)
......+.+.+.+.|.++|++++|+|+.++...+.+.+..+...+..........+. .+...+...+++++++ +.
T Consensus 182 ~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (567)
T COG1132 182 RVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG-FL 260 (567)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 555666788899999999999999999998776666555554444432222222222 2222222222222222 22
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccE
Q 001189 665 VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 744 (1128)
Q Consensus 665 v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i 744 (1128)
+.. +.. ..+.+...+.+...+..++..+............+.+|+.++++.+++... ... ...+..+.|
T Consensus 261 ~~~-~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I 329 (567)
T COG1132 261 VLS-GSL-----TVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSI 329 (567)
T ss_pred HHc-CCC-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeE
Confidence 221 111 123344555666667777777778888888899999999999987554211 111 023445779
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+|+||+|+|+++ +++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.+||+||++++...+|++|++|
T Consensus 330 ~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 330 EFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 999999999753 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
||||.||++||++||.++.+ .+|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+|||
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998876 69999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++++..++
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999999988888999999999999999999999999999999999999998 678999987643
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-70 Score=684.40 Aligned_cols=540 Identities=24% Similarity=0.302 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
...+++.++...+....++++....|....... .. ..+...++++.++..++.+++.+.....+.+...+++..++++
T Consensus 139 ~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (686)
T TIGR03797 139 LAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDR 218 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666654322111 11 1223344455566778888899999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||++.+.|++++|++ |++.+...+...+...+..+...+..++++...++...++++.++++++.+..+..+
T Consensus 219 ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 297 (686)
T TIGR03797 219 LLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGL 297 (686)
T ss_pred HHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 788887766554444444444444444445555554444433333333333333333
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~ 658 (1128)
..+...+......+...+.+.|+++|+.+||+++.++++...+.+..+...+..........|.......+ ..++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il 377 (686)
T TIGR03797 298 LQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALF 377 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455678899999999999999999998888877777666655554444444444333322 222222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
+++.+.+. .+..+ .+.+-.+..+...+..++..+...+........+.+|+.++++.++|.+.. ... ..
T Consensus 378 ~~g~~lv~-~g~lt-----iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~~ 446 (686)
T TIGR03797 378 AAAISLLG-GAGLS-----LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--PG 446 (686)
T ss_pred HHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--CC
Confidence 22333232 22221 111222233344555667777777788888999999999998876653211 111 11
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++++++|
T Consensus 447 ~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 447 KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred CCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 23467999999999976556899999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++|+||||||.+|++||+|||.++.+.++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||++++
T Consensus 527 ~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred hccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998766889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+|||||||||+||+++++.+.+.|++. ++|+|+||||++++..||+|+||++|+|++.|+|+||+++ ++.|++++.
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999885 6899999999999999999999999999999999999986 467777665
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=684.95 Aligned_cols=541 Identities=24% Similarity=0.358 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+...+++.++...+....+++.....|.......... ....+++++.++..++..++.+.+...+.+...+++.++++
T Consensus 163 l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 242 (711)
T TIGR00958 163 LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFR 242 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666667666666654322111111 12233444555666777888888889999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
++++.|+.||++++.|++++|+++|++.++..+...+..++..+..++..++++..+++...++++..+++.+.+...+.
T Consensus 243 ~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~ 322 (711)
T TIGR00958 243 SLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFG 322 (711)
T ss_pred HHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777776666666555444333333333444444
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG---ANRWLAIRLEIVGGLMI 657 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~wl~~~l~~~~~~~~ 657 (1128)
+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+....... ...|....+..+..+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 402 (711)
T TIGR00958 323 KRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV 402 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556677899999999999999999998888777776655443332221 12233222233333333
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 658 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 658 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++++.+.+. .+..+ .+.+..++.+...+..++..+......+.....+.+|+.++++.+++.+.. .. ...
T Consensus 403 l~~g~~lv~-~g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~~ 472 (711)
T TIGR00958 403 LYYGGQLVL-TGKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LAP 472 (711)
T ss_pred HHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CCC
Confidence 333333332 22221 223333455666677788888888888899999999999999876543211 11 111
Q ss_pred CCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 738 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
++..+.|+|+||+|+|++. .+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 2345789999999999743 257999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++|+||||+|.+|++||||||.+.. ..+|++++++++.++++++++++|.|+||.+|++|.+||||||||++||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998764 4678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
+++|+|||||||||+||+++++.|++ ....+++|+|+||||++++..||+|++|++|+|+|.|+|+||+++. +.|++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHh
Confidence 99999999999999999999999999 3334789999999999999999999999999999999999999865 46665
Q ss_pred H
Q 001189 976 M 976 (1128)
Q Consensus 976 ~ 976 (1128)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 4
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=668.61 Aligned_cols=543 Identities=25% Similarity=0.377 Sum_probs=409.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF---YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
.+.+++.++...+....+.++....|....... .... +..+++++.++..++.+.+.++....+.+...+++..++
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 105 (592)
T PRK10790 26 GLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVM 105 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666677777776664321111 1111 112233344455666777888888888999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
+++++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++.++++...++++..+++.......+
T Consensus 106 ~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~ 185 (592)
T PRK10790 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIY 185 (592)
T ss_pred HHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998777766666666666666666565555544433222222222222223
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLMIW 658 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~ 658 (1128)
.+..+...+......+....++.|.++|+.+||+|+.++++.+.+.+..+...+..........+. .....++..++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (592)
T PRK10790 186 QRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILC 265 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333445667788999999999999999999888887766655444433322222211 1112222111111
Q ss_pred HHH-HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 659 LTA-TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 659 ~~~-~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++. .+.....+..+ .+.+..++.+...+..++..+...+...+....+.+|+.++++.+++.... . ..
T Consensus 266 ~~~~~~~~~~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~---~~ 334 (592)
T PRK10790 266 GLLMLFGFSASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---D---DR 334 (592)
T ss_pred HHHHHHHHHHCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---C---cc
Confidence 110 01111122211 222333444555677777888888888999999999999998765442111 1 11
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++++.+
T Consensus 335 ~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 335 PLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 2334679999999999753 479999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|++|+||||+|.+|++|+++||.++.+.+|++++++++.++++++++++|.|+||.++++|.+||||||||++|||||++
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|+.++
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~~l~ 572 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMY 572 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999999875 6788777
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
+.
T Consensus 573 ~~ 574 (592)
T PRK10790 573 QL 574 (592)
T ss_pred HH
Confidence 64
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=682.93 Aligned_cols=542 Identities=23% Similarity=0.324 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++....|......... ..+...++++.++..++.+++.++....+.+...+++..++++++
T Consensus 159 ~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 238 (710)
T TIGR03796 159 LLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHIL 238 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555556666666655432211111 122333444555677788889999999999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.||++.++|++++|++.| ..+...+...+...+..+..++..++++...++...++++.+++++..+..++.+..
T Consensus 239 ~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~ 317 (710)
T TIGR03796 239 RLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRR 317 (710)
T ss_pred cCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 566665554444444455555555555555555554444443333333344444444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLT 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~ 660 (1128)
++..+......+...+.+.|+++|+.+||+++.++.+.+++.+......+..........+.......+. .++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~ 397 (710)
T TIGR03796 318 VDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVV 397 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445567788999999999999999999988887776665555444333333333333322222 2222222
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC--C-CCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES--N-RPPPG 737 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~--~-~~~~~ 737 (1128)
+.+.+. .+..+ .+.+..++.+...+..++..+...+........+.+|+.++++.++|.+..... . ...+.
T Consensus 398 g~~~v~-~g~lt-----~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~ 471 (710)
T TIGR03796 398 GGLRVM-EGQLT-----IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPS 471 (710)
T ss_pred HHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccC
Confidence 223232 22221 122222334444556667777777788888999999999999877664321100 0 00111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|+++++++++
T Consensus 472 ~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 472 PRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 23457899999999998655689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|.+|++||||||.++. +.++++++++++.+++++++.++|.|+||.++|+|.+||||||||++||||++
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998765 46899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|.+.|++ .++|+|+||||++++..||||++|++|+|++.|+|+||+++. +.|+++
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~-~~y~~l 708 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYARL 708 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcC-CcHHHH
Confidence 99999999999999999999999999987 589999999999999999999999999999999999999864 567765
Q ss_pred H
Q 001189 977 V 977 (1128)
Q Consensus 977 ~ 977 (1128)
+
T Consensus 709 ~ 709 (710)
T TIGR03796 709 I 709 (710)
T ss_pred h
Confidence 4
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=680.62 Aligned_cols=541 Identities=21% Similarity=0.323 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
..+++.++...+....++++..+.|........ .. .+...++++.+...++.+++.++....+.+...+++..+++++
T Consensus 160 ~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 239 (708)
T TIGR01193 160 NIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHL 239 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666777777777654322111 11 1222334445556677888888999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|+.||++++.|++++|++ |...+...+.......+..+..++..++++.++++...++++..+++++++...+.+.
T Consensus 240 l~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~ 318 (708)
T TIGR01193 240 FELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRT 318 (708)
T ss_pred HcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 8877766554443333333333444444444455544443333333333334444444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW---LAIRLEIVGGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w---l~~~l~~~~~~~~~~ 659 (1128)
.++..+......+...+.+.|+++|+.+||+|+.++++.+++.+......+..+.......+ +...+..+..+++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~ 398 (708)
T TIGR01193 319 FNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILW 398 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555667788999999999999999999988877766665544443332222222 222222233333333
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+.. +..+ .+.+..+..+...+..++..+............+.+|+.++++.++|.+... .....++
T Consensus 399 ~g~~lv~~-g~ls-----~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~ 469 (708)
T TIGR01193 399 TGAYLVMR-GKLT-----LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNN 469 (708)
T ss_pred HHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCC
Confidence 33333332 2221 1122223344445566677777777888888999999999998776643211 1111234
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||+|+++++++++|+
T Consensus 470 ~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 470 LNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 45789999999999743 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~--~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||||+|.+|++||+|||.++ ...++++++++++.++++++++++|.||||.++++|.+||||||||++||||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999976 3568999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++. +++|+|+||||++++..||+|++|++|++++.|+|+||+++. +.|++++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~-~~y~~l~ 706 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN-GFYASLI 706 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC-CcHHHHh
Confidence 99999999999999999999999999875 789999999999999999999999999999999999999864 6777765
Q ss_pred H
Q 001189 978 Q 978 (1128)
Q Consensus 978 ~ 978 (1128)
+
T Consensus 707 ~ 707 (708)
T TIGR01193 707 H 707 (708)
T ss_pred h
Confidence 3
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-69 Score=659.86 Aligned_cols=496 Identities=24% Similarity=0.336 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
++.++..++.++..++....+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888999999999999999999999999999999999999999999998877766676666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLL-LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
++..+++++++++...++++.++ +++.....++.+..+...+......+.+.+.+.|.++|++++|+|+.++++.+++.
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 66666666666665444332222 22222223333333444444455566788899999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCcchhhhHHHHHHHHHHH----HHHHHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW---LTATFAVVQNGSAENQEAFASTMGLLLSY----ALNITSLLTAV 698 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~g~~l~~----~~~~~~~~~~~ 698 (1128)
+..+...+..........+......++..+... +++.+.+ .+.. .+|.++++ ......++.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~--~g~~--------t~g~l~a~~~~~~~~~~~~~~~l 297 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV--GGNA--------QPGALIALFVFAALAAFEALMPV 297 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccc--------chhHHHHHHHHHHHHHHHHHHHH
Confidence 777766555544433333333333333222221 1111111 1211 12222221 12223455666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEEC
Q 001189 699 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 699 ~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
............+.+|+.++++.+++.+... ... ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|
T Consensus 298 ~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~--~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG 373 (574)
T PRK11160 298 AGAFQHLGQVIASARRINEITEQKPEVTFPT--TST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--ccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEEC
Confidence 6667777888999999999988765422110 111 112346799999999997644579999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHh
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERA 857 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~ 857 (1128)
|||||||||+++|+|+++|++|+|.+||+|+++++..++|++|+||||+|.+|++|++|||.++. +.++++++++++.+
T Consensus 374 ~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~ 453 (574)
T PRK11160 374 RTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV 453 (574)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998764 46899999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeec
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
++++++++ |.||||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+|||
T Consensus 454 ~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitH 532 (574)
T PRK11160 454 GLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532 (574)
T ss_pred CCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 938 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 938 ~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|++++..||+|++|++|++++.|+|+||+++. +.|+++++
T Consensus 533 r~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-g~y~~l~~ 572 (574)
T PRK11160 533 RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ-GRYYQLKQ 572 (574)
T ss_pred ChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC-cHHHHHHh
Confidence 99999999999999999999999999999864 57777764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=610.01 Aligned_cols=499 Identities=21% Similarity=0.321 Sum_probs=396.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 001189 470 FGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 549 (1128)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~ 549 (1128)
++..+..++.-+.......+.-..+|.++|+++...+..-..+...|+++||+..|++.+|+..-..+..+...+..+..
T Consensus 69 I~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~ 148 (573)
T COG4987 69 ILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV 148 (573)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 33444445555555666777888999999999999999999999999999999999999998766666555555555555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHH
Q 001189 550 TFVLIGIVSTMSLWA-IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSM 628 (1128)
Q Consensus 550 ~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~ 628 (1128)
+.+..+++++...+. .+.+++....+...+++..+...+.....+..+.+++.+++.|...++.||..+.+.+...+..
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e 228 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATE 228 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 555555555433332 2223333334444445555555555566778899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001189 629 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLASLAEN 707 (1128)
Q Consensus 629 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~~e~ 707 (1128)
+...+..........|..+.+.++.++++.....+.....+ .+....-...+++++. ......+.++. ........
T Consensus 229 ~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-~G~~~~~~aa~~ll~~--f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-AGALAQPGAALALLVI--FAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCCcchhHHHHHHHHH--HHHHHHHhhhcchhHHHhhH
Confidence 88888888888888888888887776665533222222111 1111111112222221 22333344443 34456677
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCc-cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG-SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 786 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g-~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKST 786 (1128)
...|..|+.++.+.++|.... +. ..+..+ .++++||+|+|+++.+++|+|+||++++||+|||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP-DE-----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC-cc-----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788999999888766654322 11 111112 69999999999988778999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHH
Q 001189 787 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRR 865 (1128)
Q Consensus 787 ll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~ 865 (1128)
++++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|++|+|+||...+ +.+|+++++++++++++++++.
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998654 4699999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhc
Q 001189 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 945 (1128)
Q Consensus 866 lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~ 945 (1128)
.|.||+|++||+|..|||||||||+|||+|+++.+++||||||.|||+.|++.|.+.|.+..+++|+|+||||+..++.|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|||+||++|+++|+|+|.+|+++ .+.|+++.+
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999985 467877764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=661.90 Aligned_cols=502 Identities=24% Similarity=0.354 Sum_probs=401.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Q 001189 466 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 545 (1128)
Q Consensus 466 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~ 545 (1128)
+++.++..++.+++.+.....+.+....++..+++++++.|..+|++.+.|++++|+++|++.+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777788888888999999999999999999999999999999999999999998777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 546 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
.++..++++.++++...++++.++++.+++.....+..++..+..........+.+.|.++|+.+||+|+.++.+.+++.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 66666666666666554444433333333343444444444444445566778899999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLM---IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 702 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 702 (1128)
+..+...+..........+......++..+. +++++.+.+.. +..+ .+.+..++.+...+..++..+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~-g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM-DTLT-----AGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655544444444444433333222 22222222222 2221 2233334555556677777888888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCC
Q 001189 703 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 782 (1128)
Q Consensus 703 ~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~Gs 782 (1128)
........+.+|+.++.+.+++.+.. .. ...+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+|||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~---~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEG---KR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---Cc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 88888899999999998766543211 11 11233457999999999976556899999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHH
Q 001189 783 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLK 860 (1128)
Q Consensus 783 GKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~ 860 (1128)
|||||+++|+|+++|++|+|++||+|+++++.+++|++|+||||+|.+|++||++||.++. ..+|++++++++.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999998753 36899999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 001189 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940 (1128)
Q Consensus 861 ~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~ 940 (1128)
++++++|.|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 941 ~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
.+..||+|++|++|+++|.|+|++|+++. +.|+.++..
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~ 578 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKM 578 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHH
Confidence 99999999999999999999999999875 578877653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-71 Score=638.59 Aligned_cols=464 Identities=26% Similarity=0.414 Sum_probs=352.9
Q ss_pred cEEEEeEEEEeCCCCCC-CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC----CCCcee------------
Q 001189 119 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~-~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~----~g~~~~------------ 181 (1128)
.++++|++..|...++. ++++||||++.+||++||||+|||||||+.++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999999755332 5999999999999999999999999999999999999876 343211
Q ss_pred ---ec-CcEEEEecCCC-CCc--ccHHHHHhc----CCCCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCC
Q 001189 182 ---IR-GTVAYVPQVSW-IFN--ATVRDNILF----GSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246 (1128)
Q Consensus 182 ---~~-~~i~~v~Q~~~-l~~--~Tv~eni~~----g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~L 246 (1128)
+| +.|+|++|+|+ .+| .||.+-|.- ....+ .++..+.++..++.+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 12 35999999986 344 477766642 22111 2334455666666554433 1223689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEee
Q 001189 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 247 SGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
|||||||+.||+||..+|++||+||||.+||+.+..+|.+.+.... ..|.++|+||||+..+.+ ||||+||.+|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998665543 359999999999999875 89999999999999
Q ss_pred ecChhHHhhcch-HHHH-HHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhc
Q 001189 325 EGTFEDLSNNGE-LFQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 402 (1128)
Q Consensus 325 ~g~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
.|+.+++.++.. .|.. ++.. .|.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a--------------------------------~p~----------------------- 260 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA--------------------------------VPR----------------------- 260 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh--------------------------------CCC-----------------------
Confidence 999988865421 0000 0000 000
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 403 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 482 (1128)
Q Consensus 403 g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 482 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (539)
T COG1123 261 -------------------------------------------------------------------------------- 260 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 483 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 562 (1128)
Q Consensus 483 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1128)
++
T Consensus 261 ----------------------------------------------~~-------------------------------- 262 (539)
T COG1123 261 ----------------------------------------------LG-------------------------------- 262 (539)
T ss_pred ----------------------------------------------cc--------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 563 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 642 (1128)
Q Consensus 563 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1128)
..
T Consensus 263 ----------------------------~~-------------------------------------------------- 264 (539)
T COG1123 263 ----------------------------DE-------------------------------------------------- 264 (539)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 643 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 643 ~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
.+ ...+
T Consensus 265 ----------------------------------------------------------------------~~----~~~~ 270 (539)
T COG1123 265 ----------------------------------------------------------------------KI----IRLP 270 (539)
T ss_pred ----------------------------------------------------------------------cc----cccc
Confidence 00 0000
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
...+ . +....++++|++++|.. ....+++||||+|++||++||||+||||||||.++|+|
T Consensus 271 ~~~~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRGP--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred cccc--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0 01124889999999973 12468999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEe--cCCCChHHhhhceEEEcCCCc--ccc-ccHhhccc-cC---CCC----CHHHHHHHHHHhcHH
Q 001189 794 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLD-PF---SEH----SDADLWEALERAHLK 860 (1128)
Q Consensus 794 ~~~p~~G~I~i~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~Tv~~nl~-~~---~~~----~~~~i~~~l~~~~l~ 860 (1128)
+++|++|+|.++|.| .+.-....+|+++-+|+|||. |-. .||+++|. +. ... ..+.+.+.++.+++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999977 332234457789999999996 333 49998874 21 111 123456666776665
Q ss_pred H-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeec
Q 001189 861 D-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAH 937 (1128)
Q Consensus 861 ~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH 937 (1128)
. ++.+. ...||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.++.+ +.|.|+|||
T Consensus 420 ~~~l~ry-----------P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH 488 (539)
T COG1123 420 PEFLDRY-----------PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488 (539)
T ss_pred HHHHhcC-----------chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 3 34444 468999999999999999999999999999999999999999999988754 689999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 938 ~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+..++. ||||+||++|+|+|.|+.+++.+.+...|.+...
T Consensus 489 Dl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred CHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 9999999 9999999999999999999999887766765443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=616.10 Aligned_cols=510 Identities=24% Similarity=0.323 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHH
Q 001189 461 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 540 (1128)
Q Consensus 461 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~ 540 (1128)
+...++++.++..++...+....+..+.+....+|..+++++.+.+..+-...|+|++...++..++.++.++..++.++
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556667777777788888888889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH
Q 001189 541 MGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 617 (1128)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~ 617 (1128)
+...+..+..++.+++..+...+ +.+|++++++++.- ...+...+..-.+-..+.++|.+.++|+.|+|+|+..
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg---~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~ 198 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG---LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRT 198 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 88877777777777766654433 44555555443322 2222222223334456788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 618 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
+...+...+......+.+..........+..++++..+-+.+++.+....--..+....+.+.+. +..+.-+..++..
T Consensus 199 ~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~--LiLAPEff~PlR~ 276 (559)
T COG4988 199 EATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFV--LILAPEFFQPLRD 276 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH--HHHhHHHHHHHHH
Confidence 88888777777777777766666666677778887766666655544321100011122222222 2223344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
+-..+....+...+.+.+..+.+.|.+.+...+ .....|.....++++|++++|++++ ++++|+||+++||+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 666666666777788888888877665432211 1122232334566779999998664 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHH
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALER 856 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~ 856 (1128)
|+||||||||+++|+|+++|++|+|.+||+++++++++.+|+++++|||+|.+|++|+||||.++.. .+|+++.+++++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998775 689999999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++.++++. |.|+||.+||+|.+|||||+|||+||||++++++++|+||||++||.+|++.|.+.|.+..+++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||++.+.+||+|+||++|++++.|+|++|.++. +.|+.|+.+.
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 999999999999999999999999999999864 5788887653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=670.98 Aligned_cols=531 Identities=24% Similarity=0.358 Sum_probs=401.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++....|....... .... +..+++++.++..++.+++.++....+.+...+++..++++++
T Consensus 152 ~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 231 (694)
T TIGR03375 152 VLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVL 231 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555566666666666654322111 1111 2223334455567778888999999999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.| ++.++|++++|+ +|++.+...+.......+..+..++..++++.++++...++.+..+++++++..++.+..
T Consensus 232 ~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 309 (694)
T TIGR03375 232 GLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPL 309 (694)
T ss_pred CCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 788999999999 799999877655444444444444444444555555444433333333333333444444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN----RWLAIRLEIVGGLMIWL 659 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~wl~~~l~~~~~~~~~~ 659 (1128)
++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+...+......... .+..+...+...+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 389 (694)
T TIGR03375 310 SRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVV 389 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556677889999999999999999999888877766665544443332222 22222222222222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
+.+.+.. +..+ .+.+..++.+...+..++..+...+........+.+|+.++++.++|.+... ......+
T Consensus 390 -g~~~v~~-g~ls-----~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~---~~~~~~~ 459 (694)
T TIGR03375 390 -GVYLISD-GELT-----MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT---RFLHRPR 459 (694)
T ss_pred -HHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CCCCCCC
Confidence 2333322 2221 1222223344455566777777778888889999999999998776533211 1111112
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|+++++++++|+
T Consensus 460 ~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 460 LQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 34679999999999765567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||||+|.+|++||+|||.++.+ .++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||++++
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998764 789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=679.08 Aligned_cols=482 Identities=22% Similarity=0.319 Sum_probs=348.7
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 118 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
+.++++|++++|+... ..++|+||||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 347999999999999999999999999999999999999998764321
Q ss_pred ----------ec-CcEEEEecCC--CCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccc
Q 001189 182 ----------IR-GTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEI 239 (1128)
Q Consensus 182 ----------~~-~~i~~v~Q~~--~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~v 239 (1128)
.+ ..||||+|+| .++ ..||+|||.++. ..+. +++.++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 11 3699999998 465 479999998752 1222 234445555555310 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEE
Q 001189 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILV 317 (1128)
Q Consensus 240 g~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l 317 (1128)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+..... .|+|+|+|||+++++. .||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 334468999999999999999999999999999999999999999886544433 3899999999999876 58999999
Q ss_pred eCCeEeeecChhHHhhcch-HHH-HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhh
Q 001189 318 HEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 395 (1128)
Q Consensus 318 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1128)
++|++++.|+++++..... .|. .+.. ..+..
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~--------------------------------~~~~~--------------- 275 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLA--------------------------------AVPQL--------------- 275 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhh--------------------------------ccCcc---------------
Confidence 9999999888776542110 000 0000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHH
Q 001189 396 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLV 475 (1128)
Q Consensus 396 ~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 475 (1128)
..+
T Consensus 276 -------------------------------------------------~~~---------------------------- 278 (623)
T PRK10261 276 -------------------------------------------------GAM---------------------------- 278 (623)
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001189 476 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 555 (1128)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~ 555 (1128)
.|+ .. +
T Consensus 279 ---------------------------------------~~~-------~~-------~--------------------- 284 (623)
T PRK10261 279 ---------------------------------------KGL-------DY-------P--------------------- 284 (623)
T ss_pred ---------------------------------------ccc-------cC-------C---------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001189 556 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYT 635 (1128)
Q Consensus 556 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~ 635 (1128)
.+-+..
T Consensus 285 -------------------------------------~~~~~~------------------------------------- 290 (623)
T PRK10261 285 -------------------------------------RRFPLI------------------------------------- 290 (623)
T ss_pred -------------------------------------cccccc-------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 636 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 715 (1128)
Q Consensus 636 ~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri 715 (1128)
. ...++.
T Consensus 291 ----------------------------------------------------------------------~---~~~~~~ 297 (623)
T PRK10261 291 ----------------------------------------------------------------------S---LEHPAK 297 (623)
T ss_pred ----------------------------------------------------------------------c---cccccc
Confidence 0 000000
Q ss_pred HhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------CCCceeeeeEEEcCCcEEEEECCCCCCHHH
Q 001189 716 GNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 786 (1128)
Q Consensus 716 ~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~---------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKST 786 (1128)
..+.+.+ . ..+ +....|+++|+++.|+.. ...+|+||||+|++||++||+|+|||||||
T Consensus 298 ----~~~~~~~----~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 298 ----QEPPIEQ----D-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST 365 (623)
T ss_pred ----cCccccc----c-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHH
Confidence 0000000 0 000 011249999999999521 136999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChH---HhhhceEEEcCCC--cccc-ccHhhccccC----CCCCH----HHHHH
Q 001189 787 MLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF----SEHSD----ADLWE 852 (1128)
Q Consensus 787 ll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~Tv~~nl~~~----~~~~~----~~i~~ 852 (1128)
|+++|+|+++|++|+|.++|.++...+.. .+|++|+||||+| .++. .||.+|+... ..... +++.+
T Consensus 366 Llk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (623)
T PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAW 445 (623)
T ss_pred HHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999876543 3567899999998 3665 4999998531 11111 23334
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--Cc
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SC 930 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~ 930 (1128)
.++.+++. +........+||||||||++|||||+.+|+||||||||++||+.+.+.|.+.|+++.+ +.
T Consensus 446 ~L~~~gL~----------~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 515 (623)
T PRK10261 446 LLERVGLL----------PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515 (623)
T ss_pred HHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444442 1223444568999999999999999999999999999999999999999999988643 68
Q ss_pred EEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 931 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||+|||+++.+.. ||||++|++|+|++.|+++++..++...|.
T Consensus 516 tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 516 AYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 99999999999987 999999999999999999999865544443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=674.61 Aligned_cols=508 Identities=24% Similarity=0.351 Sum_probs=400.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHH
Q 001189 458 PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 537 (1128)
Q Consensus 458 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~ 537 (1128)
...+.+.|..++++.++..++...++.+.+.|...++|.+.++.+||+++.|||.+..|++..|++.|++.+++.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 34566677778888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHH-HHHHHHHHHHhhcccHHHHHHHHHcchHHHH
Q 001189 538 NMFMGQVSQLLSTFVLIGIVSTMSLWAIM---PLLLLFYAAYLY-YQS-TAREVKRLDSITRSPVYAQFGEALNGLSTIR 612 (1128)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~-~~~-~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIr 612 (1128)
..++..+..+++.+++.++..|....+++ |++++...++.. ..+ +.++.. .-+.--+...|++.+++|+.
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~-----~ya~Ag~iaEe~i~~iRTV~ 224 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQE-----AYAKAGSIAEEVISSIRTVY 224 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhh
Confidence 88888888888877777776665544433 443333222222 111 222222 22233456789999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001189 613 AYKAYDRMADINGKSMDKNIRYTLVNMGA----NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYA 688 (1128)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~ 688 (1128)
+|+.|++..+++.+.+....+........ ..+..+.+....++.+|+++.+...... +....+.... .+
T Consensus 225 af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~--~~g~v~~v~~-----~v 297 (1228)
T KOG0055|consen 225 AFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGY--NGGDVITVFF-----SV 297 (1228)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCceEEEEEe-----eh
Confidence 99999999999999888887776544322 1222233344455566666555443111 1111110000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCC-CCceeeeeEE
Q 001189 689 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFT 767 (1128)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~-~~~l~~vsl~ 767 (1128)
+.....++..............|..++.+.++..+.......... .....+|.|+|+||+|+|+... .++|+|+||+
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~ 375 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLK 375 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEE
Confidence 111112222223334445566788888888764433211111111 1123468999999999997542 3799999999
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHS 846 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~ 846 (1128)
|++|+.|||||||||||||++++|.|+|+|++|+|+|||.|+++++.+++|++||+|.|+|.||++||+||+.++. +.+
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat 455 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDAT 455 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 468
Q ss_pred HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHH
Q 001189 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926 (1128)
Q Consensus 847 ~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~ 926 (1128)
++++.++++.+++++++..+|.||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.+|++|++.
T Consensus 456 ~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 456 REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 927 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 927 ~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
.+|+|.|+|||||++++++|+|+||++|+|+|.|+|+||++++ +.|+++++.+
T Consensus 536 ~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 536 SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 8999999764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=695.96 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=224.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|+....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533479999999999999999999999999999999999999999999999999865 455678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++.++.. |++|||.++. ....++ +.+.++..++. .........|||||||||+|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-----------~~~dk~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-----------LYADRLAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHH
Confidence 999999998865 9999997532 122222 33344444443 3344445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
||+.+|+||||||||+|||+.+++.+++.|++.. +++|||++||++++++. ||||++|++|++++.|+++++.++.+.
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 9999999999999999999999999999999864 57999999999999988 999999999999999999999877653
Q ss_pred chHHHHHhhchhh--HH---HHHHHhhCccchhhhhhhhhhcccchhhhhhcHHHHHhhhhhhhhccccCccchhhhhhh
Q 001189 972 SFSKMVQSTGAAN--AQ---YLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVED 1046 (1128)
Q Consensus 972 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1046 (1128)
.|.-.++...... .. ........ ..++.. .. ..+ .....+. +......+
T Consensus 2164 g~~l~i~~~~~~~~~~~~~~~v~~~i~~------------~fp~a~--~~----e~~---~~~l~~~-----i~~~~~~~ 2217 (2272)
T TIGR01257 2164 GYIVTMKIKSPKDDLLPDLNPVEQFFQG------------NFPGSV--QR----ERH---YNMLQFQ-----VSSSSLAR 2217 (2272)
T ss_pred ceEEEEEEcCcchhhhhHHHHHHHHHhh------------cCccce--ee----ccc---cceEEEE-----eCcccHHH
Confidence 2221000000000 00 00000000 000000 00 000 0000010 01124577
Q ss_pred hhhHHhhhhhhh-hhhhhhccCCchHHHHHhhhcCcc
Q 001189 1047 QNNILKKTKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1082 (1128)
Q Consensus 1047 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1128)
....||+.|..+ ++.|++++++||+||++..++...
T Consensus 2218 if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2218 IFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 888999999888 999999999999999999977543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=647.28 Aligned_cols=543 Identities=24% Similarity=0.366 Sum_probs=424.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++....+......... ..+..+++++.+...++.+++.+.....+.+....++..++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 96 (571)
T TIGR02203 17 VLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEK 96 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555556655444322111111 1223345556666777788888889999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++.+.++...++++.++++......++.+
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~ 176 (571)
T TIGR02203 97 LLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176 (571)
T ss_pred HHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777777777777777777777776666555555554545555555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG---LMIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~---~~~~ 658 (1128)
..++..+......++..+.+.|.++|+.+||+++.++++.+++.+..+...+..........+......++.. ++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (571)
T TIGR02203 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVL 256 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556667788899999999999999999999988888877776666555444444444433333222 2222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
+++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++.+.. ..+. -
T Consensus 257 ~~g~~~~~-~g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~ 325 (571)
T TIGR02203 257 FIALFQAQ-AGSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--E 325 (571)
T ss_pred HHHHHHHH-cCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--C
Confidence 22222222 22221 223333344555666777777778888888999999999998765543211 1111 1
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|
T Consensus 326 ~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 23467999999999976545799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
++|+|+||+|.+|++|+|+||..+. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++
T Consensus 406 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998774 57899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|++++++++. +.|.++
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~ 564 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQL 564 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999764 456554
Q ss_pred HH
Q 001189 977 VQ 978 (1128)
Q Consensus 977 ~~ 978 (1128)
+.
T Consensus 565 ~~ 566 (571)
T TIGR02203 565 HN 566 (571)
T ss_pred HH
Confidence 43
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-67 Score=657.39 Aligned_cols=541 Identities=22% Similarity=0.327 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001189 427 LLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 504 (1128)
Q Consensus 427 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 504 (1128)
+++.++...+....++++....|....... .. ..+...++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 145 ~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (694)
T TIGR01846 145 LLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLG 224 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444555566666666654322111 11 1223344455556777888899999999999999999999999999
Q ss_pred CCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 505 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAR 584 (1128)
Q Consensus 505 ~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 584 (1128)
.|+.||++.+.|++++|+ +|++.+...+.......+..+...+..++++.+.++...++++..++++..+..+..+..+
T Consensus 225 l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 303 (694)
T TIGR01846 225 LPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILR 303 (694)
T ss_pred CCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 6999888766544444343333333334444555554444433333333333333333333
Q ss_pred HHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 585 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLTA 661 (1128)
Q Consensus 585 ~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~~ 661 (1128)
+..+......+...+.+.|+++|+.+||+++.++++.+++.+..+...+..........+......++. .+++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 383 (694)
T TIGR01846 304 KRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFG 383 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333344556778999999999999999999988888877766655554443333333333333322 22222222
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCC
Q 001189 662 TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 741 (1128)
Q Consensus 662 ~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~ 741 (1128)
.+.+.. +..+ .+.+..+..+...+..++..+...+...+....+.+|+.++++.++|.+.. ..... ....
T Consensus 384 ~~lv~~-g~it-----~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~--~~~~ 453 (694)
T TIGR01846 384 AHLVIG-GALS-----PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAAL--PELR 453 (694)
T ss_pred HHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCC--CCCC
Confidence 232322 2221 112222334445566677777777888889999999999999877654211 10011 1124
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 67999999999976556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+||||+|.+|++|++|||.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++|+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998754 468999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|+|++|+++. +.|++++..
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 691 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQ 691 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHHHh
Confidence 999999999999999999999999988889999999999999999999999999999999999999865 678877653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=660.25 Aligned_cols=454 Identities=23% Similarity=0.379 Sum_probs=339.8
Q ss_pred cEEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 119 AISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
.++++|++++|+.. ..+++|+++||++++||+++|+||||||||||+++|+|+++| ++|.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 135799999999999999999999999999999999999986 5664311
Q ss_pred ----ec-CcEEEEecCCC--CC-cccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCC
Q 001189 182 ----IR-GTVAYVPQVSW--IF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245 (1128)
Q Consensus 182 ----~~-~~i~~v~Q~~~--l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~ 245 (1128)
.+ ..|||++|++. ++ ..|+++|+.+.. ..+ .+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 11 36999999985 43 469999986421 112 134455566666643110 11223468
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
|||||||||+|||||+.+|++|||||||++||+.+.+++++.+.+... .|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999986554333 3899999999999886 48999999999999
Q ss_pred eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcc
Q 001189 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETG 403 (1128)
Q Consensus 324 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 403 (1128)
+.|+++++..... ..
T Consensus 237 ~~g~~~~~~~~~~------------------------------------------------------~~----------- 251 (529)
T PRK15134 237 EQNRAATLFSAPT------------------------------------------------------HP----------- 251 (529)
T ss_pred EeCCHHHHhhCCC------------------------------------------------------CH-----------
Confidence 8877654321000 00
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 404 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL 483 (1128)
Q Consensus 404 ~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 483 (1128)
+.+
T Consensus 252 ---------~~~-------------------------------------------------------------------- 254 (529)
T PRK15134 252 ---------YTQ-------------------------------------------------------------------- 254 (529)
T ss_pred ---------HHH--------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
+
T Consensus 255 -------------------------------------~------------------------------------------ 255 (529)
T PRK15134 255 -------------------------------------K------------------------------------------ 255 (529)
T ss_pred -------------------------------------H------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
++ ...
T Consensus 256 --------------~~----------~~~--------------------------------------------------- 260 (529)
T PRK15134 256 --------------LL----------NSE--------------------------------------------------- 260 (529)
T ss_pred --------------HH----------HhC---------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001189 644 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 723 (1128)
Q Consensus 644 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~ 723 (1128)
. +. . +
T Consensus 261 ------------------------------~---------------------------------------~~----~-~- 265 (529)
T PRK15134 261 ------------------------------P---------------------------------------SG----D-P- 265 (529)
T ss_pred ------------------------------c---------------------------------------cc----c-c-
Confidence 0 00 0 0
Q ss_pred CCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 724 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 724 e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
..+ +. +....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 266 ~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 266 VPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred ccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 000 00 00114899999999952 124699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEecCCCChHH---hhhceEEEcCCC--cccc-ccHhhccccCC----C-CCHHHHHHHHHHhcHHHHH
Q 001189 795 VELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDAI 863 (1128)
Q Consensus 795 ~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~Tv~~nl~~~~----~-~~~~~i~~~l~~~~l~~~i 863 (1128)
+ |++|+|.++|.++...+... +|++++|+||++ .++. .|+++|+.+.. . ....+.. ..+.+++
T Consensus 336 ~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l 409 (529)
T PRK15134 336 I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVM 409 (529)
T ss_pred C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHH
Confidence 8 58999999999987765443 467899999998 3665 49999996421 0 1111110 1122333
Q ss_pred HHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCch
Q 001189 864 RRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLN 940 (1128)
Q Consensus 864 ~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~ 940 (1128)
+.+ |+. ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++
T Consensus 410 ~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 410 EEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred HHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 332 443 234455578999999999999999999999999999999999999999999998653 789999999999
Q ss_pred hhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 941 TIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 941 ~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+.. ||||++|++|++++.|++++++..+
T Consensus 488 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 488 VVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 9987 9999999999999999999997654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-70 Score=659.60 Aligned_cols=443 Identities=21% Similarity=0.321 Sum_probs=335.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~-------------~~ 183 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++| ++|.+.. .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999962 5799999999999999999999999999999999999986 6665421 13
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
..++|++|++.++ ..|++||+.++.. .+.+ ++.++++..++.. .......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHHH
Confidence 4599999999876 5699999988632 1211 2233333333321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|+++..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999998665544468999999999999865 899999999999876643221
Q ss_pred hhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHH
Q 001189 332 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 411 (1128)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 411 (1128)
... . ...
T Consensus 231 ~~~---------------------------------------------------------------~----------~~~ 237 (506)
T PRK13549 231 TED---------------------------------------------------------------D----------IIT 237 (506)
T ss_pred CHH---------------------------------------------------------------H----------HHH
Confidence 000 0 000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 412 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 491 (1128)
Q Consensus 412 ~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (506)
T PRK13549 238 -------------------------------------------------------------------------------- 237 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 492 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 571 (1128)
Q Consensus 492 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1128)
++
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (506)
T PRK13549 238 -----------------------------MM------------------------------------------------- 239 (506)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 572 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 651 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 651 (1128)
+
T Consensus 240 -------~------------------------------------------------------------------------ 240 (506)
T PRK13549 240 -------V------------------------------------------------------------------------ 240 (506)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001189 652 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 731 (1128)
Q Consensus 652 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~ 731 (1128)
.... . .. .+...
T Consensus 241 ----------------~~~~-----------------------------------------~---~~--~~~~~------ 252 (506)
T PRK13549 241 ----------------GREL-----------------------------------------T---AL--YPREP------ 252 (506)
T ss_pred ----------------CcCc-----------------------------------------c---cc--ccccc------
Confidence 0000 0 00 00000
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCC-CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEec
Q 001189 732 NRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDI 809 (1128)
Q Consensus 732 ~~~~~~~p~~g~i~~~~v~~~y~~-~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~i 809 (1128)
++ +....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 253 --~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 253 --HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV 327 (506)
T ss_pred --cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC
Confidence 00 01124899999999942 12469999999999999999999999999999999999999 5999999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---cccc-ccHhhccccCC--CC------CHHHHHHHHHHhcHHHHHHHccCCcch-hhh
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EH------SDADLWEALERAHLKDAIRRNSLGLDA-QVS 875 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~--~~------~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~ 875 (1128)
...+. ...|+.++|+||++ .+|. .|+.+|+.+.. .. ...+ ....+.++++.+ |++. ...
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~ 400 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPE 400 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcc
Confidence 65543 34567799999996 3554 59999996421 11 1111 111234445543 3432 334
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
....+||||||||++||||++.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++++.. |||+++|++
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~ 480 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHE 480 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 5556899999999999999999999999999999999999999999998864 47899999999999987 999999999
Q ss_pred CEEEEecChhHH
Q 001189 954 GRVLEYDTPEEL 965 (1128)
Q Consensus 954 G~i~~~g~~~~l 965 (1128)
|+++..|+++++
T Consensus 481 G~i~~~~~~~~~ 492 (506)
T PRK13549 481 GKLKGDLINHNL 492 (506)
T ss_pred CEEEEEeccccC
Confidence 999999988776
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=639.54 Aligned_cols=544 Identities=22% Similarity=0.296 Sum_probs=393.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++++.++...+....++++....|..... .....+..+++++.+...+..++..++......+....++..++++++
T Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 22 ILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666776666543221 111112222333333333333333444444445555566779999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|..+|++.+.|++++|+++|++.+...+...+..++..++..+..++++..+++...++++.++++++.+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765544444444444444444444445555444444433333344444555555
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWLT 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~~ 660 (1128)
++..+......+.+.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.....+++ ..+++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555667788899999999999999999998887777666655554433322222222222222 22222222
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++.+.+++.+... ..... -+.
T Consensus 261 g~~~v~-~g~lt-----~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~~-~~~ 331 (588)
T PRK13657 261 GAALVQ-KGQLR-----VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP--GAIDL-GRV 331 (588)
T ss_pred HHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC--CCCCc-CCC
Confidence 333332 22222 1122223334444555566666666666677788888888776543321110 10000 012
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||.|+.+++...+|++
T Consensus 332 ~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 332 KGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3579999999999743 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+|+||+|.+|++|+|+||.++. +.+|++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++++|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764 46899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++. +.|.+++..
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 569 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG-GRFAALLRA 569 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC-ChHHHHHHH
Confidence 9999999999999999999999999887889999999999999999999999999999999999999764 678777654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=659.46 Aligned_cols=439 Identities=27% Similarity=0.434 Sum_probs=333.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~~~g~~~~---------------- 181 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+. +|++|.+..
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999952 57999999999999999999999999999999999996 687765322
Q ss_pred -----------------------------ecCcEEEEecC-CCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhC
Q 001189 182 -----------------------------IRGTVAYVPQV-SWIF-NATVRDNILFGS---AFE----PARYEKAIDVTS 223 (1128)
Q Consensus 182 -----------------------------~~~~i~~v~Q~-~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~ 223 (1128)
++..++|++|+ +.++ ..|++||+.++. ..+ .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 12359999997 5666 469999998742 122 134455666666
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEc
Q 001189 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 302 (1128)
Q Consensus 224 l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvt 302 (1128)
+.+..+. ...+|||||||||+|||||+.+|++|||||||++||+.+.+++++.+.+... .|+|+|+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544433 3358999999999999999999999999999999999999999886554433 489999999
Q ss_pred cCccchh-cCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcc
Q 001189 303 NQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 381 (1128)
Q Consensus 303 H~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1128)
|+++++. .||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 9999986 4899999999998865543221000
Q ss_pred ccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHH
Q 001189 382 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 461 (1128)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 461 (1128)
T Consensus 260 -------------------------------------------------------------------------------- 259 (520)
T TIGR03269 260 -------------------------------------------------------------------------------- 259 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 541 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~ 541 (1128)
+.
T Consensus 260 ------------------------------------------------------------~~------------------ 261 (520)
T TIGR03269 260 ------------------------------------------------------------FM------------------ 261 (520)
T ss_pred ------------------------------------------------------------HH------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHH
Q 001189 542 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 621 (1128)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~ 621 (1128)
....
T Consensus 262 ------------------------------------------~~~~---------------------------------- 265 (520)
T TIGR03269 262 ------------------------------------------EGVS---------------------------------- 265 (520)
T ss_pred ------------------------------------------hhch----------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 622 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701 (1128)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 701 (1128)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEEC
Q 001189 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 702 ~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
++.. +... + +....|+++|++++|+. +..++|+|+||+|++||++||+|
T Consensus 266 ------------~~~~----~~~~--------~----~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 266 ------------EVEK----ECEV--------E----VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred ------------hhcc----cccc--------C----CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 0000 0000 0 00124999999999952 22469999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEEC-CE---ecCCCCh---HHhhhceEEEcCCCccccc-cHhhccccCC--CCCH-
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILID-GF---DIAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSD- 847 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~-g~---~i~~~~~---~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~--~~~~- 847 (1128)
|||||||||+++|+|+++|++|+|.++ |. ++...+. ..+|++|+|+||++.+|.. |+++|+.... ....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999996 64 3333322 2456789999999988865 9999996311 1111
Q ss_pred ---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 001189 848 ---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 848 ---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~ 924 (1128)
+++.++++..++.+. ..+........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+
T Consensus 398 ~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 398 LARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122333333332110 00012344556899999999999999999999999999999999999999999998
Q ss_pred HHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 925 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 925 ~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+.. .+.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 472 ~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 864 37899999999999987 99999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=656.45 Aligned_cols=441 Identities=22% Similarity=0.337 Sum_probs=333.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 5899999999963 57999999999999999999999999999999999999998875432 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC-----C-----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA-----F-----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
|+|++|++.++ ..||+||+.++.. . +. ++..++++..++.+. ......+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 99999999876 5699999987531 0 11 122333444443221 233446899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|++|||||||++||+.+.+++++.+.+...+|+|+|+|||+++++. .||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999999866554445899999999999986 48999999999998776644
Q ss_pred HHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHH
Q 001189 330 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 409 (1128)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 409 (1128)
++.... ...
T Consensus 231 ~~~~~~-----~~~------------------------------------------------------------------ 239 (510)
T PRK09700 231 DVSNDD-----IVR------------------------------------------------------------------ 239 (510)
T ss_pred hCCHHH-----HHH------------------------------------------------------------------
Confidence 321000 000
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 410 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 489 (1128)
Q Consensus 410 ~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 489 (1128)
T Consensus 240 -------------------------------------------------------------------------------- 239 (510)
T PRK09700 240 -------------------------------------------------------------------------------- 239 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 490 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 569 (1128)
Q Consensus 490 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 569 (1128)
++
T Consensus 240 -------------------------------~~----------------------------------------------- 241 (510)
T PRK09700 240 -------------------------------LM----------------------------------------------- 241 (510)
T ss_pred -------------------------------Hh-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 570 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 649 (1128)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 649 (1128)
+ .+. .
T Consensus 242 ---------~-------------~~~-~---------------------------------------------------- 246 (510)
T PRK09700 242 ---------V-------------GRE-L---------------------------------------------------- 246 (510)
T ss_pred ---------c-------------CCC-c----------------------------------------------------
Confidence 0 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 001189 650 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 729 (1128)
Q Consensus 650 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~ 729 (1128)
. .+ .....+..
T Consensus 247 ------------------~--------------------------------------------~~---~~~~~~~~---- 257 (510)
T PRK09700 247 ------------------Q--------------------------------------------NR---FNAMKENV---- 257 (510)
T ss_pred ------------------c--------------------------------------------cc---cccccccc----
Confidence 0 00 00000000
Q ss_pred CCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 730 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 730 ~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
.++ +....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 258 ---~~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 258 ---SNL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred ---ccC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 000 0112499999998763 389999999999999999999999999999999999999999999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---ccccc-cHhhccccCCCC------------CHHHHHHHHHHhcHHHHHHHccCCcc-
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEH------------SDADLWEALERAHLKDAIRRNSLGLD- 871 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~~-Tv~~nl~~~~~~------------~~~~i~~~l~~~~l~~~i~~lp~Gld- 871 (1128)
...+. ..+|+.++|+||++ .+|.. |+++|+.+.... ...+ ....+.+.++.+ |+.
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~ 400 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKC 400 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCC
Confidence 66543 34577899999984 46654 999998643110 1111 111233444443 443
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEE
Q 001189 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRIL 949 (1128)
Q Consensus 872 t~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~ 949 (1128)
.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||+
T Consensus 401 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred CCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE
Confidence 23445556799999999999999999999999999999999999999999998864 47899999999999887 99999
Q ss_pred EEeCCEEEEecChh
Q 001189 950 LLDSGRVLEYDTPE 963 (1128)
Q Consensus 950 vl~~G~i~~~g~~~ 963 (1128)
+|++|++++.+++.
T Consensus 481 ~l~~G~i~~~~~~~ 494 (510)
T PRK09700 481 VFCEGRLTQILTNR 494 (510)
T ss_pred EEECCEEEEEecCc
Confidence 99999999887653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-67 Score=592.52 Aligned_cols=506 Identities=24% Similarity=0.341 Sum_probs=369.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
-.+..|.+..++..++..++.+++.....+.-++...+.|++.+.+.+++|.+..+|.+.+.+..-...+...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999988887776666665555444444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH
Q 001189 540 FMGQVSQLLSTFVLIGIV-STMSLWAIMPLLLLFYAAYLYYQSTA-REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 617 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~ 617 (1128)
++..++.+......+.+- ++...+ +....+..|.++..+.... .+.|+....+.....+...+.+.+..+||+|+.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~l-i~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFAL-ITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 444433333222222111 111111 1112222333332221111 1223333333444556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001189 618 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLL 695 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 695 (1128)
++..+++...+....+......+....+.+.-..+..+....+..+... .++..+ ..-+-++.++..++..++
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mt-----vgdlv~~n~l~~qL~~~l 308 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMT-----VGDLVMVNSLLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccchhhHHHHHHHHHhHH
Confidence 9999999988888877766655444444443333332222111111111 011110 011112223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEE
Q 001189 696 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVG 775 (1128)
Q Consensus 696 ~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ 775 (1128)
..+-..+......+.-+.-+.... +.+.. ..+. +.+.....+.|+|+||+|.|+++ +++|+++||+|++||+||
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~~~-i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILL--EVDED-IQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhh--hhhhh-hhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEE
Confidence 444433333333333222222111 11110 0111 11222335679999999999876 469999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHH
Q 001189 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEAL 854 (1128)
Q Consensus 776 ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l 854 (1128)
|||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.|||||||..||++||.+||.++. ..+++++.+++
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~ 461 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEAC 461 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999998765 46899999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001189 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934 (1128)
Q Consensus 855 ~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~ 934 (1128)
++++++|.+.++|+||+|.+||+|..||||||||++||||++++|+|+++|||||+||.+||+.|.+.|.+...++|+|+
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 935 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 935 vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|.||++++++||+|+++++|+|.|+|+|+||++ +++.|..++..
T Consensus 542 IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 542 IVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999999999999999999999 56677766654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=592.96 Aligned_cols=495 Identities=24% Similarity=0.392 Sum_probs=387.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001189 473 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 552 (1128)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~ 552 (1128)
.++.-+++++.........+.+--++++|+.++++.|.-....|+++.-+.+....+. .+...+.+....+..+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4566778888888999999999999999999999999999999998888777666554 333334444444444433333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHH
Q 001189 553 LIGI-VSTMSLWAIMPLLLLFYAAY----LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 627 (1128)
Q Consensus 553 ~~~~-~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~ 627 (1128)
...+ ..+|+..+++.++.++.... -+.-+..|++.....+++ +.-.+++-+..|+|-|+++++..+++.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 2221 12233222222222211111 111122233322233322 34468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 628 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN 707 (1128)
Q Consensus 628 ~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~ 707 (1128)
+..+++..+.....-..+...-+.+.++-...++.+++..-. .+..-.+-..++.+|.+++.++++++-..+..+++
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt---~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~ 504 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVT---EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQK 504 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeee---eccccccceehHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999888777665544444444333333333333332221100 00001122345678888999999999989999999
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTl 787 (1128)
.+.-+|++.++++.++|. .+.+..++-...+|.|+|+||+|.|+++ +|+|+||||+++||+.+|+|||||+||||+
T Consensus 505 nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTi 580 (790)
T KOG0056|consen 505 NFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTI 580 (790)
T ss_pred hhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHH
Confidence 999999999988654442 2222222333357899999999999877 489999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHc
Q 001189 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRN 866 (1128)
Q Consensus 788 l~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~l 866 (1128)
+++|+|+++.++|+|.|||+||++...+.+|++||+||||..||+.||..||.+.. ..+++|+.+|.+++++++.|..+
T Consensus 581 mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~f 660 (790)
T KOG0056|consen 581 MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQF 660 (790)
T ss_pred HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998765 46899999999999999999999
Q ss_pred cCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC
Q 001189 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 946 (1128)
Q Consensus 867 p~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D 946 (1128)
|+||+|.|||+|-.||||||||+++||+++++|.|++|||+||+||..|++.||.+|.+...++|.|+|+||++++-+||
T Consensus 661 PegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 661 PEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred chhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 947 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 947 ~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
.|+|+++|+|+|.|+|+||+++++|.|.+|++.
T Consensus 741 ~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 741 LILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999999999974
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=632.83 Aligned_cols=463 Identities=24% Similarity=0.335 Sum_probs=357.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHH
Q 001189 468 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQL 547 (1128)
Q Consensus 468 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~ 547 (1128)
+.++..++.++..++....+.+...+++.++++++++.|..||+++++|++++|+++|++.++..+...+..++..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777778888899999999999999999999999999999999999999999987776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 548 LSTFVLIGIVSTMSLWAIMPLLLL-FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+..+++++.+++...++++..+++ .+....+..+..+...+......+.+.+++.|.++|+++||+|+.++++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 666666666665544433332222 2222233333333333334445677889999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 703 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 703 (1128)
..+...+..........+......++..+.. ++.+.+.+. .+..+ .+.+..++.+...+..++..+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~ 295 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVA-DGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQ 295 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555444333333332222222222111 111222222 22221 12233334445556667777777778
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCC
Q 001189 704 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 783 (1128)
Q Consensus 704 ~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsG 783 (1128)
.......+.+|+.++++.+++.+... ...+...++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsG 373 (529)
T TIGR02868 296 ALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSG 373 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCC
Confidence 88888999999999998765432111 11111123345679999999999754 36999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHH
Q 001189 784 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDA 862 (1128)
Q Consensus 784 KSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~ 862 (1128)
||||+++|+|+++|++|+|.+||+|++++ .+++|++|+||||+|.+|++||||||.++. +.+|++++++++.++++++
T Consensus 374 KSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~ 452 (529)
T TIGR02868 374 KSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADW 452 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999 999999999999999999999999999864 4689999999999999999
Q ss_pred HHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCc
Q 001189 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 939 (1128)
Q Consensus 863 i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l 939 (1128)
+.++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+
T Consensus 453 i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 453 LRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-68 Score=644.63 Aligned_cols=201 Identities=17% Similarity=0.332 Sum_probs=170.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999872 4799
Q ss_pred EEcCCCc--ccc-ccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPV--LFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~--lf~-~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++. ++. .|+++|+..+. ...++++.+.++..++. .........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 443 59999986432 12234455556555442 122334456899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 968 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~~ 968 (1128)
+|+||||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||||++|++|+++ ..|++++++..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 77999988754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=647.40 Aligned_cols=436 Identities=20% Similarity=0.326 Sum_probs=332.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999962 57999999999999999999999999999999999999999875432 1245
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC-------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA-------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
++|++|++.++ ..||+||+.++.. .+.. ++.++++..++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 99999998876 5799999988632 1111 22333444333221 223346899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|++|||||||++||+.+.+++++.+......|+|+|++||+++++. .||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998765544445889999999999986 48999999999998765432210
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
.. .
T Consensus 230 ~~---------------------------------------------------------------~-------------- 232 (501)
T PRK10762 230 ED---------------------------------------------------------------S-------------- 232 (501)
T ss_pred HH---------------------------------------------------------------H--------------
Confidence 00 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
. ..
T Consensus 233 ~------------------------------~~----------------------------------------------- 235 (501)
T PRK10762 233 L------------------------------IE----------------------------------------------- 235 (501)
T ss_pred H------------------------------HH-----------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
++
T Consensus 236 ----------------------------~~-------------------------------------------------- 237 (501)
T PRK10762 236 ----------------------------MM-------------------------------------------------- 237 (501)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
+
T Consensus 238 ------~------------------------------------------------------------------------- 238 (501)
T PRK10762 238 ------V------------------------------------------------------------------------- 238 (501)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
.. +.. ..++..+
T Consensus 239 ---------------~~--------------------------------------------~~~---~~~~~~~------ 250 (501)
T PRK10762 239 ---------------GR--------------------------------------------KLE---DQYPRLD------ 250 (501)
T ss_pred ---------------CC--------------------------------------------Ccc---ccccccc------
Confidence 00 000 0000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.+ +....|+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 251 -~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~ 319 (501)
T PRK10762 251 -KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR 319 (501)
T ss_pred -cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 00 0112488999974 379999999999999999999999999999999999999999999999999776
Q ss_pred ChH-HhhhceEEEcCCC---cccc-ccHhhccccCCC---------CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001189 813 GLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 877 (1128)
Q Consensus 813 ~~~-~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~~---------~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~ 877 (1128)
++. .+|++++|+||++ .+|. .|+++|+.+... ....+. ...+.++++.+ |+. ......
T Consensus 320 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~ 392 (501)
T PRK10762 320 SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQA 392 (501)
T ss_pred CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCc
Confidence 543 4567899999997 3554 599999964210 011111 11233444443 442 234555
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+|++|++|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999999865 47899999999999987 99999999999
Q ss_pred EEEecChhHH
Q 001189 956 VLEYDTPEEL 965 (1128)
Q Consensus 956 i~~~g~~~~l 965 (1128)
++..|+++++
T Consensus 473 i~~~~~~~~~ 482 (501)
T PRK10762 473 ISGEFTREQA 482 (501)
T ss_pred EEEEeccccC
Confidence 9999987765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=645.12 Aligned_cols=450 Identities=23% Similarity=0.391 Sum_probs=339.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-------------cC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 184 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..- +.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 579999999999999999999999999999999999999998754321 13
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
.++|++|++.++ ..||+||+.++.... .++..++++..++.... .....+|||||||||+|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHH
Confidence 599999999876 569999999874321 23444555555553322 233468999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcchHHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQ 339 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 339 (1128)
+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++.... ...
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-IIQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-HHH
Confidence 9999999999999999999999999876554446899999999999886 48999999999999888765542110 000
Q ss_pred HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhh
Q 001189 340 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 419 (1128)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~ 419 (1128)
.+.
T Consensus 235 ~~~----------------------------------------------------------------------------- 237 (510)
T PRK15439 235 AIT----------------------------------------------------------------------------- 237 (510)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 420 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
..
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (510)
T PRK15439 238 -----------------------------PA------------------------------------------------- 239 (510)
T ss_pred -----------------------------Cc-------------------------------------------------
Confidence 00
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
. ..
T Consensus 240 ------~--------~~--------------------------------------------------------------- 242 (510)
T PRK15439 240 ------A--------RE--------------------------------------------------------------- 242 (510)
T ss_pred ------c--------cc---------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 659 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 659 (1128)
...+ .
T Consensus 243 ----~~~~------~----------------------------------------------------------------- 247 (510)
T PRK15439 243 ----KSLS------A----------------------------------------------------------------- 247 (510)
T ss_pred ----cccc------c-----------------------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
..+.. ...|...+ . .+ +
T Consensus 248 ----------------------------------------------------~~~~~--~~~~~~~~-----~-~~---~ 264 (510)
T PRK15439 248 ----------------------------------------------------SQKLW--LELPGNRR-----Q-QA---A 264 (510)
T ss_pred ----------------------------------------------------ccccc--cccccccc-----c-cC---C
Confidence 00000 00000000 0 00 0
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 818 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r 818 (1128)
....|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766554 45
Q ss_pred hceEEEcCCC---ccccc-cHhhccccC--C--CC--CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001189 819 KILGIIPQSP---VLFSG-TVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 819 ~~i~~v~Q~~---~lf~~-Tv~~nl~~~--~--~~--~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrq 887 (1128)
+.|+|+||++ .+|.. |+.+|+... . .. ...+. +..+.++++.+ |+. .........|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999986 36654 999998421 0 00 11111 11233445543 443 3445556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||||++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999864 47899999999999987 999999999999999998776
Q ss_pred h
Q 001189 966 L 966 (1128)
Q Consensus 966 ~ 966 (1128)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 5
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=631.91 Aligned_cols=545 Identities=24% Similarity=0.376 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
+.+++.++...+....++.+....+....... .. ..+..+++++.+...+..+.+.++....+.+....++..+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 101 (576)
T TIGR02204 22 AALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHL 101 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666555543211111 11 11222333444445566677788888888999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++..+.+...++++..+++++....++.+.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 181 (576)
T TIGR02204 102 ISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR 181 (576)
T ss_pred HcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987766655565666666666666666565555444333333333333344444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~ 659 (1128)
.+...+..........+.+.|.++|+++||+++.++++...+.+..+...+..........|.......+. .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
T TIGR02204 182 VRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLW 261 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556667788999999999999999999988877777666554443333323333333222221 111112
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..+..++..+..++..+...+........+.+|+.++++.+++.+.... .....++
T Consensus 262 ~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~ 333 (576)
T TIGR02204 262 VGAHDVI-AGKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVP 333 (576)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcC
Confidence 2222222 22221 22233344455566677777888888888999999999999876554221110 1111223
Q ss_pred CCccEEEEEEEEEeCCCC-CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 740 SSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.+++++++.++|
T Consensus 334 ~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 334 LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred CCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 346799999999997532 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++|+|+||+|.+|++|++|||.++. +.++++++++++.+++.++++++|.|+||.++++|.+||||||||++||||+++
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754 457899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++. +.|.+++
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~-~~~~~l~ 572 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG-GLYARLA 572 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcC-ChHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999998753 5676665
Q ss_pred H
Q 001189 978 Q 978 (1128)
Q Consensus 978 ~ 978 (1128)
.
T Consensus 573 ~ 573 (576)
T TIGR02204 573 R 573 (576)
T ss_pred h
Confidence 4
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=647.57 Aligned_cols=440 Identities=21% Similarity=0.295 Sum_probs=331.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 36899999999963 46999999999999999999999999999999999999999876432 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC------CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.. .......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHH
Confidence 6999999998874 699999987631 111 22333444444321 1223456899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|+++||||||++||+.+.+++++.+.....+|+|+|+|||+++++.. ||+|++|++|+++..++..+.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~- 227 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQ- 227 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcccc-
Confidence 999999999999999999999999999999998665544468999999999998865 899999999998753320000
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
.. .+.
T Consensus 228 --------------------------------------------~~------------------~~~------------- 232 (501)
T PRK11288 228 --------------------------------------------VD------------------RDQ------------- 232 (501)
T ss_pred --------------------------------------------CC------------------HHH-------------
Confidence 00 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
+.
T Consensus 233 ~~------------------------------------------------------------------------------ 234 (501)
T PRK11288 233 LV------------------------------------------------------------------------------ 234 (501)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
..+
T Consensus 235 ---------------------------~~~-------------------------------------------------- 237 (501)
T PRK11288 235 ---------------------------QAM-------------------------------------------------- 237 (501)
T ss_pred ---------------------------HHh--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
. .+
T Consensus 238 -----------------~--~~---------------------------------------------------------- 240 (501)
T PRK11288 238 -----------------V--GR---------------------------------------------------------- 240 (501)
T ss_pred -----------------c--CC----------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
.. ++. ....+.
T Consensus 241 -----------------~~-----------------------------------------~~~---~~~~~~-------- 251 (501)
T PRK11288 241 -----------------EI-----------------------------------------GDI---YGYRPR-------- 251 (501)
T ss_pred -----------------Cc-----------------------------------------ccc---cccccc--------
Confidence 00 000 000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
+ +....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 -~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 -P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred -C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 01124889999742 489999999999999999999999999999999999999999999999998654
Q ss_pred Ch-HHhhhceEEEcCCCc---ccc-ccHhhccccCCCC---------CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001189 813 GL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSEH---------SDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 877 (1128)
Q Consensus 813 ~~-~~~r~~i~~v~Q~~~---lf~-~Tv~~nl~~~~~~---------~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~ 877 (1128)
++ ...|+.++|+||++. +|. .|+.+|+.+.... ...+ ....+.++++.+ |++ ......
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~ 393 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSL--NIKTPSREQL 393 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhc--CcccCCccCc
Confidence 43 345678999999973 554 6999998642110 1100 011223444443 342 233445
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
..+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .+.|||+|||+++++.. ||++++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 56899999999999999999999999999999999999999999998865 47899999999999987 99999999999
Q ss_pred EEEecChhHHh
Q 001189 956 VLEYDTPEELL 966 (1128)
Q Consensus 956 i~~~g~~~~l~ 966 (1128)
+++.|+++++.
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999887654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=629.06 Aligned_cols=506 Identities=22% Similarity=0.289 Sum_probs=381.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 541 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~ 541 (1128)
..+++++.++..++.++..++....+.+...+++..+++++++.|+.+|++.++|++++|+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444455566677777777888999999999999999999999999999999999999999998755444444444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHH
Q 001189 542 GQVSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 620 (1128)
Q Consensus 542 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~ 620 (1128)
..++..+..++++ ..+++...++++..+++++.+...+.+..++..+......+.+.+.+.|.++|+++||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 4433333333322 234443333322222222233333333333333334445567888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 621 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
.+++.+..+...+..........+.......+ +.++++.++.+.+. .+..+ .+.+..++.+...+..++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~lt-----~g~l~a~~~~~~~~~~pl~~ 272 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-NGSLT-----LGQLTSFVMYLGLMIWPMLA 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHH
Confidence 88877766655444433322222222222211 11222222222222 22221 11222233344445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
+......+.....+.+|+.++++.+++.+.. ....+ +..+.|+++||+|+|+++.+++|+|+||+|+|||+++|+
T Consensus 273 l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~iv 347 (569)
T PRK10789 273 LAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGIC 347 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEE
Confidence 6667777888899999999998765442211 00111 224579999999999755457999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHH
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALER 856 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~ 856 (1128)
||||||||||+++|+|+++|++|+|.+||.++.+++...+|++++|+||+|.+|++|+++||.++. ..++++++++++.
T Consensus 348 G~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~ 427 (569)
T PRK10789 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARL 427 (569)
T ss_pred CCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 4689999999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++++++.++|.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
||++++..||+|++|++|++++.|++++++++. +.|++++..
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 508 HRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred cchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 999999999999999999999999999999765 567777654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=625.14 Aligned_cols=544 Identities=21% Similarity=0.277 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
+++.+++.++...+.+..++.++...|...... ....+..+++++.+...+..++..++......+...+++.++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 99 (585)
T TIGR01192 21 VLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRI 99 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666655432211 1112222222223333334444444444555556666778999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|+.||+++++|++++|+++|++.+...+...+...+..++.++..++++..+++...++++.++++++.+...+.+.
T Consensus 100 ~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 179 (585)
T TIGR01192 100 ISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQR 179 (585)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887666555555555555555545555555554444433333333444444444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~ 659 (1128)
.++..+......+.+.+++.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++ ..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (585)
T TIGR01192 180 TKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILV 259 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555667788899999999999999999888877776666554443332222222221111111 1222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++.+.+++.... ..+ ..++
T Consensus 260 ~g~~~v~-~g~it-----~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~-~~~~ 329 (585)
T TIGR01192 260 IGTVLVI-KGELS-----VGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADA-PELP 329 (585)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccC-CCCC
Confidence 2222222 22221 122222334444555566666666677777788999998887655432111 110 1111
Q ss_pred -CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 740 -SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 740 -~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++..+|
T Consensus 330 ~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 24579999999999753 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.++|+||+|.+|++|++|||.++. ..++++++++++.+++++++.++|.|+||.++++|.+||||||||++|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764 457899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++++++. +.|++++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 567 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLL 567 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHH
Confidence 999999999999999999999999999887899999999999999899999999999999999999999864 5777776
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
..
T Consensus 568 ~~ 569 (585)
T TIGR01192 568 RR 569 (585)
T ss_pred Hh
Confidence 54
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=643.63 Aligned_cols=447 Identities=19% Similarity=0.287 Sum_probs=329.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee-------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~-------------~~~ 184 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++| ++|.+.. .+.
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999962 5799999999999999999999999999999999999987 5665322 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC-------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA-------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.|+|++|++.++ ..||+||+.++.. .+.+ +..++++..++.+.. ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 599999999876 5699999987632 1111 222333333332110 01224689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+++++.+.....+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998665544568999999999999865 899999999998764431110
Q ss_pred hhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHH
Q 001189 332 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 411 (1128)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 411 (1128)
.. .. .
T Consensus 229 ~~----------------------------------------------------------------~~---------~-- 233 (500)
T TIGR02633 229 SE----------------------------------------------------------------DD---------I-- 233 (500)
T ss_pred CH----------------------------------------------------------------HH---------H--
Confidence 00 00 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 412 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 491 (1128)
Q Consensus 412 ~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (1128)
.
T Consensus 234 --~----------------------------------------------------------------------------- 234 (500)
T TIGR02633 234 --I----------------------------------------------------------------------------- 234 (500)
T ss_pred --H-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 492 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 571 (1128)
Q Consensus 492 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1128)
.++
T Consensus 235 ----------------------------~~~------------------------------------------------- 237 (500)
T TIGR02633 235 ----------------------------TMM------------------------------------------------- 237 (500)
T ss_pred ----------------------------HHH-------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 572 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 651 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 651 (1128)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001189 652 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 731 (1128)
Q Consensus 652 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~ 731 (1128)
.... . . ..+...
T Consensus 239 ----------------~~~~-----------------------------------------~---~--~~~~~~------ 250 (500)
T TIGR02633 239 ----------------GREI-----------------------------------------T---S--LYPHEP------ 250 (500)
T ss_pred ----------------Cccc-----------------------------------------c---c--cccccc------
Confidence 0000 0 0 000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEec
Q 001189 732 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 809 (1128)
Q Consensus 732 ~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i 809 (1128)
.+ +....|+++|++++|+.+ ...+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 251 -~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 251 -HE----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred -cC----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 00 011248999999999421 23699999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---cccc-ccHhhccccCCC--CCH-HHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCC
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 880 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~~--~~~-~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~ 880 (1128)
...+. ..+|++++|+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ |+.. ........
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45678899999996 3665 499999975210 000 0000000112233444443 3321 23444567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+|||+++++.. ||||++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999987 99999999999998
Q ss_pred ecChhH
Q 001189 959 YDTPEE 964 (1128)
Q Consensus 959 ~g~~~~ 964 (1128)
.++.++
T Consensus 484 ~~~~~~ 489 (500)
T TIGR02633 484 DFVNHA 489 (500)
T ss_pred EEcccc
Confidence 776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=638.87 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=164.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCC--cccc-ccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~--~lf~-~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++ .++. .|+.+++.... ...+.++.+.++..++.. .........|||||||||+|||+++.+
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 999985 2333 37777653211 112333444444433321 123344467999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||+|++|++|+++ ..|+++++..
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999985 4599999999999987 9999999999998 6799999854
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=621.79 Aligned_cols=515 Identities=24% Similarity=0.294 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-cCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
.+++.++...+....++.+++..|... .... . ...+..+++++.++..++.+++.+.....+.+...+++..+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556666666555431 1111 1 122334455556667778888888888999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..+|++.++|++++|+++|++.++..+...+..++..+...+..++++...++...++++..+++...+...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987766655555555555555555555555544333322222222222233333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~ 659 (1128)
.+...+......+.+.+.+.|+++|+++||+|+.++++.+++.+..+...+..........+......++..+.. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445567789999999999999999999888888776665554443333333333333333222211 11
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
.+.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++... .. +...+
T Consensus 248 ~~~~~~~-~g~~t-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~ 316 (529)
T TIGR02857 248 YIGFRLL-AGDLD-----LATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA--PVTAA 316 (529)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCC
Confidence 2222222 22221 11222233444455566666667777888889999999999875433211 10 11112
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+++|+
T Consensus 317 ~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 23579999999999765457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+++||||+|.+|++||+|||.++. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4688999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=630.95 Aligned_cols=201 Identities=23% Similarity=0.298 Sum_probs=164.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999643 699999999999999999999999999999999999999999999954 1 159
Q ss_pred EEEcCCC-cccc-ccHhhccccCCC---C--CHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSP-VLFS-GTVRFNLDPFSE---H--SDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~-~lf~-~Tv~~nl~~~~~---~--~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++ .++. .|+++|+.+... . .+.+..++++.. |+.. .......+||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 5654 499999864321 1 122222333332 3322 234445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeC-CEEEE-ecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-GRVLE-YDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~-G~i~~-~g~~~~l~~~ 968 (1128)
|++.+|++|||||||++||+.+...+.+.|++. . .|||+|||+++++.. ||+|++|++ |++.+ .|+++++++.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999985 3 589999999999987 999999986 88874 5888777643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=633.49 Aligned_cols=435 Identities=21% Similarity=0.332 Sum_probs=326.4
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTVAY 188 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i~~ 188 (1128)
++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 57999999999999999999999999999999999999998875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
++|++.++ ..||+||+.++.. .+.. +..++++..++. ........+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99999775 6799999987631 1221 122223333322 122344578999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|++|||||||++||+.+.+++++.+......|+|+|++||+++++. .||+|++|++|++++.|+.+++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 224 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-- 224 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH--
Confidence 9999999999999999999999999999866554446899999999999886 4899999999999876653221000
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHH
Q 001189 337 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 416 (1128)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 416 (1128)
..
T Consensus 225 ---~~--------------------------------------------------------------------------- 226 (491)
T PRK10982 225 ---KI--------------------------------------------------------------------------- 226 (491)
T ss_pred ---HH---------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 417 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 496 (1128)
Q Consensus 417 ~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (1128)
T Consensus 227 -------------------------------------------------------------------------------- 226 (491)
T PRK10982 227 -------------------------------------------------------------------------------- 226 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 497 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 497 ~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 576 (1128)
..++
T Consensus 227 ----------------------~~~~------------------------------------------------------ 230 (491)
T PRK10982 227 ----------------------IAMM------------------------------------------------------ 230 (491)
T ss_pred ----------------------HHHH------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 656 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 656 (1128)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCC
Q 001189 657 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 736 (1128)
Q Consensus 657 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~ 736 (1128)
... . .+ ..+... .+
T Consensus 232 -----------~~~-----------------------~------------------~~-----~~~~~~-------~~-- 245 (491)
T PRK10982 232 -----------GRS-----------------------L------------------TQ-----RFPDKE-------NK-- 245 (491)
T ss_pred -----------CCC-----------------------c------------------cc-----cccccc-------CC--
Confidence 000 0 00 000000 00
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 737 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 737 ~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999975 25999999999999999999999999999999999999999999999999998766543
Q ss_pred -hhhceEEEcCCCc---ccc-ccHhhc-----cccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001189 817 -LRKILGIIPQSPV---LFS-GTVRFN-----LDPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 881 (1128)
Q Consensus 817 -~r~~i~~v~Q~~~---lf~-~Tv~~n-----l~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~L 881 (1128)
+|+.++|+||++. +|. .|+.+| +..+.. ....+.. ..+.++++.+ |+. ........+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccC
Confidence 4677999999963 555 377665 321111 1111111 1223344443 331 1235555689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
|||||||++||||++.+|+||||||||+|||+.+.+.+++.|+++. +++|||+|||+++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 57999999999999987 999999999999988
Q ss_pred cChhH
Q 001189 960 DTPEE 964 (1128)
Q Consensus 960 g~~~~ 964 (1128)
+++++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 77643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-67 Score=632.50 Aligned_cols=439 Identities=24% Similarity=0.340 Sum_probs=328.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999998876432 01248
Q ss_pred EEEecCCCC---------CcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSWI---------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~l---------~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++.+ +..|+++|+.++.. ..++..++++..++.+..+.. ..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHHH
Confidence 999998643 24699999876521 234566677777776544333 358999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999998765544458999999999998765 89999999999998776554321100
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHH
Q 001189 337 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 416 (1128)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 416 (1128)
...+..
T Consensus 228 -~~~~~~------------------------------------------------------------------------- 233 (490)
T PRK10938 228 -VAQLAH------------------------------------------------------------------------- 233 (490)
T ss_pred -hhhhhh-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 417 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 496 (1128)
Q Consensus 417 ~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (1128)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 497 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 497 ~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 576 (1128)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 656 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 656 (1128)
.+ .+..
T Consensus 234 ------~~---~~~~----------------------------------------------------------------- 239 (490)
T PRK10938 234 ------SE---QLEG----------------------------------------------------------------- 239 (490)
T ss_pred ------hh---ccCc-----------------------------------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CccccCCCCCC
Q 001189 657 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 735 (1128)
Q Consensus 657 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e-~~~~~~~~~~~ 735 (1128)
.+.+.. .+.. ... .+
T Consensus 240 --------------------------------------------------------------~~~~~~~~~~~-~~~-~~ 255 (490)
T PRK10938 240 --------------------------------------------------------------VQLPEPDEPSA-RHA-LP 255 (490)
T ss_pred --------------------------------------------------------------cccCccccccc-ccc-cC
Confidence 000000 0000 000 00
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCC-CC
Q 001189 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 813 (1128)
Q Consensus 736 ~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~-~~ 813 (1128)
.....|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+
T Consensus 256 ---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 01124999999999964 3699999999999999999999999999999999998875 69999999987632 23
Q ss_pred hHHhhhceEEEcCCCcccc---ccHhhccccC--C------CCCH---HHHHHHHHHhcHHHHHHHccCCcch-hhhcCC
Q 001189 814 LMDLRKILGIIPQSPVLFS---GTVRFNLDPF--S------EHSD---ADLWEALERAHLKDAIRRNSLGLDA-QVSEAG 878 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~---~Tv~~nl~~~--~------~~~~---~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g 878 (1128)
....|++|+|+||++.++. .++++++.+. . .... +++.++++.. |++. ......
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 399 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL-----------GIDKRTADAPF 399 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCchhhccCch
Confidence 3446788999999986542 3677665321 1 0111 2233344443 3433 334445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh--cCEEEEEeCC
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSG 954 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~vtH~l~~~~~--~D~i~vl~~G 954 (1128)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ + .|||+|||+++++.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 68999999999999999999999999999999999999999999998753 4 479999999999975 8999999999
Q ss_pred EEEEec
Q 001189 955 RVLEYD 960 (1128)
Q Consensus 955 ~i~~~g 960 (1128)
++++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=626.48 Aligned_cols=478 Identities=23% Similarity=0.268 Sum_probs=328.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-cCcEEEEecCCCCC-
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF- 196 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~- 196 (1128)
.++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+... +..||||+|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999962 3579999999999999999999999999999999999999998765432 34699999999987
Q ss_pred cccHHHHHhcCCCC------------------CH---------HHHHHHHHHhCcH-------HHHhcCCCCCcccccCC
Q 001189 197 NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQ-------HDLDLLPGGDVTEIGER 242 (1128)
Q Consensus 197 ~~Tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~~~~~l~~g~~t~vg~~ 242 (1128)
+.||+|||.++... +. .++.++++.++.. +.++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 56999999875210 01 1233333344422 112222 111 12445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
..+|||||||||+|||||+.+|++|||||||++||+.+.+++.+.+.. . +.|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 678999999999999999999999999999999999999999886543 2 3699999999999876 79999999999
Q ss_pred Ee-eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhh
Q 001189 322 VK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 400 (1128)
Q Consensus 322 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1128)
++ ..|+++++.+..... . ... ..
T Consensus 236 i~~~~g~~~~~~~~~~~~--~-~~~-----------------------------------------------------~~ 259 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKR--L-EQE-----------------------------------------------------EK 259 (552)
T ss_pred EEEecCCHHHHHHHHHHH--H-HHH-----------------------------------------------------HH
Confidence 76 678877664321000 0 000 00
Q ss_pred hcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 001189 401 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 480 (1128)
Q Consensus 401 ~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 480 (1128)
.+..+
T Consensus 260 --------~~~~~------------------------------------------------------------------- 264 (552)
T TIGR03719 260 --------EESAR------------------------------------------------------------------- 264 (552)
T ss_pred --------HHHHH-------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 481 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 560 (1128)
Q Consensus 481 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1128)
T Consensus 265 -------------------------------------------------------------------------------- 264 (552)
T TIGR03719 265 -------------------------------------------------------------------------------- 264 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 561 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSI-TRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 639 (1128)
Q Consensus 561 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1128)
.+++++.... .+.+... ++ ....
T Consensus 265 ----------------------~~~~~~~~~~~~~~~~~~------------~~-~~~~--------------------- 288 (552)
T TIGR03719 265 ----------------------QKALKRELEWVRSSPKAR------------QA-KSKA--------------------- 288 (552)
T ss_pred ----------------------HHHHHHHHHHHHhhhhhH------------HH-HHHH---------------------
Confidence 0000000000 0000000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001189 640 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 719 (1128)
Q Consensus 640 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~ 719 (1128)
.....++..+
T Consensus 289 --------------------------------------------------------------------~~~~~~~~~~-- 298 (552)
T TIGR03719 289 --------------------------------------------------------------------RLARYEELLS-- 298 (552)
T ss_pred --------------------------------------------------------------------HHHHHHhhhh--
Confidence 0000000000
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 720 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 720 ~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
..++..+.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 376 (552)
T TIGR03719 299 QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS 376 (552)
T ss_pred hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 000000000000000000011235999999999964 369999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHhhhceEEEcCCCc-ccc-ccHhhccccCCC---CC--HHHHHHHHHHhcHHHHHHHccCCcch
Q 001189 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HS--DADLWEALERAHLKDAIRRNSLGLDA 872 (1128)
Q Consensus 800 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~Tv~~nl~~~~~---~~--~~~i~~~l~~~~l~~~i~~lp~Gldt 872 (1128)
|+|.+++ + ..|+|+||++. ++. .|+++|+..... .. +.+..+. ++.+ |++.
T Consensus 377 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~ 434 (552)
T TIGR03719 377 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY---------VGRF--NFKG 434 (552)
T ss_pred eEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH---------HHhC--CCCh
Confidence 9999954 1 16999999973 564 499999965321 11 1122223 3332 3432
Q ss_pred -hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEE
Q 001189 873 -QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILL 950 (1128)
Q Consensus 873 -~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~v 950 (1128)
.......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. ++|||+|||+++++.. ||+|++
T Consensus 435 ~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEE
Confidence 234445689999999999999999999999999999999999999999999986 3589999999999987 999999
Q ss_pred EeC-CEEEE-ecChhHHhh
Q 001189 951 LDS-GRVLE-YDTPEELLS 967 (1128)
Q Consensus 951 l~~-G~i~~-~g~~~~l~~ 967 (1128)
|++ |+++. .|+++++.+
T Consensus 513 l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 513 FEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EECCCeEEEeCCCHHHHHH
Confidence 996 68774 477766543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=625.92 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=164.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 36999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCC-ccccc-cHhhccccCCC-C--C--HHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSP-VLFSG-TVRFNLDPFSE-H--S--DADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~-~lf~~-Tv~~nl~~~~~-~--~--~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|++|++ .++.. ||.+|+..... . . ..++.+.++.. |+. .........|||||||||+||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF-----------LFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhc-----------CCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999986 46654 99999864321 1 1 22233333332 232 12334446799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-CCEEEEe-cChhHHhh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 967 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~-~G~i~~~-g~~~~l~~ 967 (1128)
++.+|++|||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||+|++|+ +|++.++ |++++++.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999874 5699999999999987 99999998 8999886 88988864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=602.91 Aligned_cols=524 Identities=18% Similarity=0.210 Sum_probs=381.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++.+....|....... . ...+..+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555666666665554321111 1 1223334444455566777888888888999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
+.|+.. .+..++++++|++.+...+.. ....++..++.++.. +++..++++..++++..+++++.+..+..+.
T Consensus 91 ~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999842 356788999999999876544 233333333333322 3334444433332222122222222222333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~~~~ 659 (1128)
.++..+......+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+......+ +..++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455667788999999999999999999888887766665544433222222222221111 12222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++.... ...+ +
T Consensus 245 ~g~~l~~-~g~it-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~---~ 312 (544)
T TIGR01842 245 LGAYLAI-DGEIT-----PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLP---E 312 (544)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCC---C
Confidence 2222222 22222 122222344445566677777777778888999999999998766543211 1111 2
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+
T Consensus 313 ~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 23579999999999755457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
.++|+||+|.+|++|++||+..+.+ .++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986554 689999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|++||||||||+||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999875 5799999999999988899999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=602.09 Aligned_cols=484 Identities=26% Similarity=0.357 Sum_probs=338.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecC-cEEEEecCCCCC-
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF- 196 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~-~i~~v~Q~~~l~- 196 (1128)
.|.++|++++|+ ++++|+++||++.+|+++||||+|||||||||++|+|...|++|.+....+ +|+|++|++.+.
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 478999999999999999999999999999999999999999887665544 799999999987
Q ss_pred cccHHHHHhcCCCCC---HHHHHHHHH------------------H-------hCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 197 NATVRDNILFGSAFE---PARYEKAID------------------V-------TSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 197 ~~Tv~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
..||.+.+..+...- ..+++.+.. . ......+..+. .... .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg--~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG--FPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC--CCcc-cCchhhcCH
Confidence 569999998764210 011111110 0 01111111121 1111 334578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe-eec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 326 (1128)
|||.|++|||||..+||+|||||||||||.++..|+.+.+.. .+| |+|+||||++||+. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999999999987653 356 99999999999997 6999999999765 577
Q ss_pred ChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccch
Q 001189 327 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVS 406 (1128)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 406 (1128)
+|+.+.+............. + + .+....
T Consensus 234 ny~~~~~~r~~~~~~~~~~~-------~------------------------------------~----~~~~~~----- 261 (530)
T COG0488 234 NYSSYLEQKAERLRQEAAAY-------E------------------------------------K----QQKELA----- 261 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------H------------------------------------H----HHHHHH-----
Confidence 77765543211100000000 0 0 000000
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIIS 486 (1128)
Q Consensus 407 ~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 486 (1128)
. +..|
T Consensus 262 -----~-------------------------------~~~~--------------------------------------- 266 (530)
T COG0488 262 -----K-------------------------------EQEW--------------------------------------- 266 (530)
T ss_pred -----H-------------------------------HHHH---------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 487 SLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 566 (1128)
Q Consensus 487 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1128)
++|+..
T Consensus 267 --------------------------------i~r~~~------------------------------------------ 272 (530)
T COG0488 267 --------------------------------IRRGKA------------------------------------------ 272 (530)
T ss_pred --------------------------------HHHHHh------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 567 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 646 (1128)
Q Consensus 567 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 646 (1128)
...++
T Consensus 273 ------------~~~~~--------------------------------------------------------------- 277 (530)
T COG0488 273 ------------AASKA--------------------------------------------------------------- 277 (530)
T ss_pred ------------ccchH---------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCC
Q 001189 647 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSE 724 (1128)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~--~~~~~e 724 (1128)
...+......+++.+- ...|..
T Consensus 278 --------------------------------------------------------k~a~sr~k~l~k~~~~~~~~~~~~ 301 (530)
T COG0488 278 --------------------------------------------------------KKAKSRIKRLEKLEARLAEERPVE 301 (530)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHhhhhhccccc
Confidence 0000000111111110 000110
Q ss_pred CccccCCCCCCCC-CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 001189 725 APLVIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803 (1128)
Q Consensus 725 ~~~~~~~~~~~~~-~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~ 803 (1128)
......-..+++. -..+..++++|+++.|.++ +++++++||.|.+|++|||+||||+|||||+++|.|...|.+|+|.
T Consensus 302 ~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred ccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 0000000001111 1223469999999999654 5799999999999999999999999999999999999999999998
Q ss_pred ECCEecCCCChHHhhhceEEEcCCC-cccc-ccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 804 IDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 804 i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
++- .-++||++|+. .++. .|+-+++.... ...+.+++..|.+.++..--. ......
T Consensus 381 ~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~ 439 (530)
T COG0488 381 VGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGV 439 (530)
T ss_pred eCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhh
Confidence 873 13699999998 3443 38888886443 223566777777665543221 233457
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||.||.||+.++.+|++|||||||++||.++...+.++|.+ ...|||+||||.+++.. |++|+++++ ++..+
T Consensus 440 LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 999999999999999999999999999999999999999999988 57799999999999999 999999999 77777
Q ss_pred -cChhHHhhc
Q 001189 960 -DTPEELLSN 968 (1128)
Q Consensus 960 -g~~~~l~~~ 968 (1128)
|+++++.+.
T Consensus 517 ~g~y~~y~~~ 526 (530)
T COG0488 517 EGGYEDYLEQ 526 (530)
T ss_pred CCCHHHHHHh
Confidence 899888764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=666.98 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=178.3
Q ss_pred cEEEEEEEEEeC--CCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~--~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.++++||+++|+ ++.+++|+|||++|+|||++||+||||||||||+++|+|..+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 233579999999999999999999999999999999999997 78899999999984 257
Q ss_pred hhceEEEcCCCccc-cccHhhccccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 818 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf-~~Tv~~nl~~~~------~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
|+.++||||++.++ ..||+|||.+.. ..+++ .+.++++..++.+ -.|+.+++.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997521 12332 3445555555433 357788887778999999
Q ss_pred HHHHHHHHhccCCC-EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh--hhcCEEEEEeCC-EEEEecC
Q 001189 887 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 961 (1128)
Q Consensus 887 qrl~lArall~~p~-iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~--~~~D~i~vl~~G-~i~~~g~ 961 (1128)
||++|||||+.+|+ ||+|||||||||+.+...|++.|++.. +++|||+++|+++.. ..||+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 579999999999974 459999999987 9999999
Q ss_pred hhH
Q 001189 962 PEE 964 (1128)
Q Consensus 962 ~~~ 964 (1128)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=653.23 Aligned_cols=544 Identities=20% Similarity=0.273 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 505 (1128)
.+++.++...+....+..++...+.... ......+...+++++++.+++.+++.+++...+.+...+++.+++++++++
T Consensus 65 ~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~ 143 (1466)
T PTZ00265 65 SFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ 143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444444444555555443211 112233445566667778888999999999999999999999999999999
Q ss_pred CccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 585 (1128)
Q Consensus 506 p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 585 (1128)
|+.||+.++.|++++|++.|+..+...+...+..++..++.+++.++++++.+|...++++.++++++++..++.+..+.
T Consensus 144 ~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~ 223 (1466)
T PTZ00265 144 DGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKI 223 (1466)
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877777777777777777777777777655544443333333333444444444
Q ss_pred HHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001189 586 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR----LEIVGGLMIWLTA 661 (1128)
Q Consensus 586 ~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~----l~~~~~~~~~~~~ 661 (1128)
..+......+...+.+.|++.|+++||+|+.++++.+++.+......+..........+.... ..+..++++|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445667789999999999999999999998888776666555443332222221111 1122233333333
Q ss_pred HHHHHhc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCC
Q 001189 662 TFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 734 (1128)
Q Consensus 662 ~~~v~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~ 734 (1128)
.+ +..+ +..+....++..++.++++ ..+..+............+.+|+.++++.+++.+... .
T Consensus 304 ~l-v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~-----~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-~--- 373 (1466)
T PTZ00265 304 RI-IISDLSNQQPNNDFHGGSVISILLGVLISM-----FMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-D--- 373 (1466)
T ss_pred HH-HHcCCcccccccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-C---
Confidence 33 2221 1111111122222222211 1222334445667778899999999988665432111 1
Q ss_pred CCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEecCCC
Q 001189 735 PPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFDIAKF 812 (1128)
Q Consensus 735 ~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i-~g~~i~~~ 812 (1128)
....+..+.|+|+||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+ ||.++.++
T Consensus 374 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 1112223479999999999743 236999999999999999999999999999999999999999999999 57999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCC-------------------------------------------------
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS------------------------------------------------- 843 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~------------------------------------------------- 843 (1128)
+...+|++|+||||+|.+|++||++||.+..
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 9999999999999999999999999997631
Q ss_pred ---------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 001189 844 ---------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 844 ---------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~ 914 (1128)
..++++++++++.+++++++.++|.|+||.+++.|.+||||||||++|||||+++|+|||||||||+||++
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 13568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCC--------------------------------------
Q 001189 915 TDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG-------------------------------------- 954 (1128)
Q Consensus 915 t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G-------------------------------------- 954 (1128)
+++.|++.|++.. +++|+|+||||++++..||+|++|++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999875 479999999999999889999999986
Q ss_pred ---------EEEEecChhHHhhcCCCchHHHHHhh
Q 001189 955 ---------RVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 955 ---------~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+|+|+|+|+||+++.++.|+.+++.+
T Consensus 694 ~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 694 NNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986678999998654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=545.23 Aligned_cols=454 Identities=28% Similarity=0.465 Sum_probs=345.9
Q ss_pred CcEEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCce-----------
Q 001189 118 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 180 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~----------- 180 (1128)
+.+.++|++..|... +...++++|||+|++||.+||||+||||||-..+.++|+++.. +|.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 458999999888632 3467999999999999999999999999999999999998641 12111
Q ss_pred ----eecC-cEEEEecCCCC-Cc--ccHHH----HHhcCCCCC----HHHHHHHHHHhCcHH---HHhcCCCCCcccccC
Q 001189 181 ----VIRG-TVAYVPQVSWI-FN--ATVRD----NILFGSAFE----PARYEKAIDVTSLQH---DLDLLPGGDVTEIGE 241 (1128)
Q Consensus 181 ----~~~~-~i~~v~Q~~~l-~~--~Tv~e----ni~~g~~~~----~~~~~~~~~~~~l~~---~~~~l~~g~~t~vg~ 241 (1128)
.+|+ +|++++|+|-- .| -||.. -|......+ .++..+.++..++.+ .++..|
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------- 155 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------- 155 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------
Confidence 1233 69999999953 22 24444 444433222 345556666666644 244444
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC
Q 001189 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE 319 (1128)
Q Consensus 242 ~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~ 319 (1128)
..|||||||||-||.||..+|++||-||||.|||.....+|.+.+.... ..|..+++||||+..++. ||||+||.+
T Consensus 156 --HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 156 --HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred --cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 5899999999999999999999999999999999999999998654433 348999999999999986 799999999
Q ss_pred CeEeeecChhHHhhcch-HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhh
Q 001189 320 GMVKEEGTFEDLSNNGE-LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 398 (1128)
Q Consensus 320 G~i~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1128)
|++++.|+.+++...+. .|.+..-++
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~a----------------------------------------------------- 260 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAA----------------------------------------------------- 260 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhc-----------------------------------------------------
Confidence 99999998776654321 111111000
Q ss_pred hhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 399 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 399 ~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 558 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 559 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 638 (1128)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001189 639 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 718 (1128)
Q Consensus 639 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~ 718 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHH
Q 001189 719 IELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 789 (1128)
Q Consensus 719 ~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~ 789 (1128)
.|.-. .++........++.+||...|+- +...++++|||++++||.+||||.||||||||-.
T Consensus 261 --eP~g~-------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~ 331 (534)
T COG4172 261 --EPSGD-------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGL 331 (534)
T ss_pred --CCCCC-------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHH
Confidence 00000 00000001123566666666631 1125899999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHH---hhhceEEEcCCCc--ccc-ccHhhccc----cCC-C----CCHHHHHHHH
Q 001189 790 TLFRIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNLD----PFS-E----HSDADLWEAL 854 (1128)
Q Consensus 790 ~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~Tv~~nl~----~~~-~----~~~~~i~~~l 854 (1128)
+|+|+++++ |+|.++|.++..++.++ +|+++-+|+|||+ |-. .||.+-+. ... . ..++++.++|
T Consensus 332 allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL 410 (534)
T COG4172 332 ALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410 (534)
T ss_pred HHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Confidence 999999876 99999999999888776 5889999999996 322 36655332 222 1 1256678888
Q ss_pred HHhcHHHHH-HHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcE
Q 001189 855 ERAHLKDAI-RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCT 931 (1128)
Q Consensus 855 ~~~~l~~~i-~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~T 931 (1128)
+.+|++... .+.| ..+|||||||++||||++-+|++++||||||+||..-...|.+.|+++- .+-+
T Consensus 411 ~EVGLDp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~Ls 479 (534)
T COG4172 411 EEVGLDPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479 (534)
T ss_pred HHcCCChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCe
Confidence 888776432 3344 5799999999999999999999999999999999999999999999864 3679
Q ss_pred EEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 932 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 932 vi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
-++||||+..+.. ||+|+||.+|+|||+|+.+++..++...|.+.
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999998 99999999999999999999999887666543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=542.68 Aligned_cols=487 Identities=25% Similarity=0.378 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001189 481 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV-ST 559 (1128)
Q Consensus 481 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 559 (1128)
.++...+..+.+.+--..|.|+.++.+.|.-+..+|-+...+..-..-++..+...+...+..++.+....+..... .+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34455666777778888899999999999877666654443333333333333344444444444433333322222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 560 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 639 (1128)
Q Consensus 560 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1128)
+...+.+..++++.+............+|....+.+...+.-.+++-+..++|.|+.|+.+..++...++.+.+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 33333333333222222222222234455555666667778889999999999999999999999999998888877666
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 640 GANRWLAIRLEIVGGLMIW---LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 716 (1128)
Q Consensus 640 ~~~~wl~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~ 716 (1128)
.+-.|+.+.-..+...... +.+...+..+ ..+ .+.+...-.+..+++.++..+-..+..+.+.....++..
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g-~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mf 237 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEG-QLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMF 237 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhc-cCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Confidence 6666666654443322111 1111222211 111 122333445666777777777777778888888888888
Q ss_pred hhhcCCCCCccccCCCCCCCCCC-CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 717 NYIELPSEAPLVIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 717 ~~~~~~~e~~~~~~~~~~~~~~p-~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.+.+.+.. +....++-|| ..|.+.|+||+|.|.+. +++|+++||++++|+++||||++|+||||++++|+|+|
T Consensus 238 dLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 238 DLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred Hhhccchhhc---cCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 8877665432 2223345564 45789999999999876 48999999999999999999999999999999999999
Q ss_pred CCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001189 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQV 874 (1128)
Q Consensus 796 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v 874 (1128)
++++|.|.+||.|+.....+.+|+.||+||||..||+.|+..|+.+..+ .+++|++.+++.++++++++.+|.||+|.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 9999999999999999999999999999999999999999999987654 689999999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
||+|-.||||||||++|||+++++|+||+|||+||+||..||+.||..|++...++|.++|+||++++.+||.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChhHHhhcCCCchHHHHH
Q 001189 955 RVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|.|+|+||+++ +|.|.+|+.
T Consensus 474 ~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 474 RIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999998 678988874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-62 Score=601.56 Aligned_cols=200 Identities=19% Similarity=0.287 Sum_probs=162.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 459999999999543 3699999999999999999999999999999999999999999999875 2479
Q ss_pred EEEcCCCccccccHhhccc--c---CCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFSGTVRFNLD--P---FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~--~---~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++. ...++.+|.. + +....++++.++++..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999873 2223444421 1 112345556666666555321 223345689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 966 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~ 966 (1128)
.+|++|||||||++||+.+...+.+.|.+. ++|||+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4599999999999987 9999999999998 568887764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=581.79 Aligned_cols=514 Identities=16% Similarity=0.128 Sum_probs=361.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 508 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ 508 (1128)
+.++........+++++.+.+...... . .....++++.++..++.++..++....+.+...+++.++++++++.|+.
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~ 102 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE 102 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 333444444555556666654321110 1 1122233445556677788888888899999999999999999999999
Q ss_pred ccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 509 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 588 (1128)
Q Consensus 509 ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 588 (1128)
||++.++|++++|+++|++.++..+.. ...++..+..++..+++++++++...++++.++++.+....+..+..++..+
T Consensus 103 ~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~ 181 (555)
T TIGR01194 103 EIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH 181 (555)
T ss_pred HHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876643 3344444444555555555555544444333333322222222222223233
Q ss_pred HHHhhcccHHHHHHHHHcchHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 589 LDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV 666 (1128)
Q Consensus 589 ~~~~~~s~~~~~~~E~l~g~~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 666 (1128)
......+.+.+.+.|.+.|++++|+|+.++ ...+.+.+..+...+.................++..+...+...+...
T Consensus 182 ~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (555)
T TIGR01194 182 AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM 261 (555)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677889999999999999999853 334444444443333322211111111111111111111100111101
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc---cCCCCC--CCCCCCC
Q 001189 667 QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---IESNRP--PPGWPSS 741 (1128)
Q Consensus 667 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~---~~~~~~--~~~~p~~ 741 (1128)
. +..+ .+.+..++.+...+..++..+............+.+|+.++++.+++++.. .+.... .+.....
T Consensus 262 ~-~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (555)
T TIGR01194 262 F-ASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV 335 (555)
T ss_pred h-cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCC
Confidence 1 1111 122333344455566777777888888899999999999997643221111 000000 0111223
Q ss_pred ccEEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 742 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+++||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++..++|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 579999999999753 23699999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++++||||+|.+|++|+++|+. ...++++++++++.++++++++.+|.|+||. .+||||||||++||||++++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~ 488 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLED 488 (555)
T ss_pred hhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999963 3457889999999999999999999999995 68999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHH-HH-cCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIR-EE-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~-~~-~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|+|||||||||+||+++++.+++.+. .. .+++|+|+||||++++..||+|++|++|+++|.
T Consensus 489 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 489 RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999988764 33 368999999999999989999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=614.32 Aligned_cols=470 Identities=20% Similarity=0.264 Sum_probs=345.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
...+.+....+...+|+++++.|..++.+.++|+++|++++|++.++...... ..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l-~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQL-HTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778889999999999999999999999999999999998876433 22222323333222222221111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
+.++++++++++..++.+..+..++.....+....+.+.|.++|+++||+|++++.+.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333333334433444455667889999999999999999999988877666554443333222222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 644 WLAIRLEIVGGL-MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 644 wl~~~l~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
+..+.......+ .+...+.+.+. ++..+. +.+..++++...+..++..+......+.....+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~-~g~Lt~-----g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLL-GGDLTP-----ARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 222222221111 11112222222 333322 22223344445556666777777788888999999999998755
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-c
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-G 800 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-G 800 (1128)
++.+.. . ++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |
T Consensus 599 e~~~~~---~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG 673 (1622)
T PLN03130 599 ERVLLP---N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673 (1622)
T ss_pred cccccc---C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc
Confidence 432110 0 00 01123469999999999743 3579999999999999999999999999999999999999999 8
Q ss_pred eEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+|.+ |.+|+||||+|++|++||||||.++.+.++++++++++.|++.++++.+|.|++|.+||+|.+
T Consensus 674 ~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred eEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 9974 568999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|||||||||+||||++++|+|||||||||+||+++++.| +++++...+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999876 4667776789999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchHHHHHh
Q 001189 960 DTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|+++||+++. +.|..+...
T Consensus 821 Gt~~eL~~~~-~~~~~l~~~ 839 (1622)
T PLN03130 821 GTYEELSNNG-PLFQKLMEN 839 (1622)
T ss_pred CCHHHHHhcc-hhHHHHHHh
Confidence 9999999753 567766654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=614.18 Aligned_cols=471 Identities=19% Similarity=0.240 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
...+.+....++..+|+++++.|..++++.++|+++|++++|++.++.... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456667777788899999999999999999999999999999999987653 2222222222222222222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
+.++++++++++..++.+..+..++.....+....+.+.|.++|+++||+|++++.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222333333333333344455577888999999999999999999988877766555444333322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 644 WLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 644 wl~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
+..+.......++. +..+.+.+. ++..+ .+.+-.++++...+..++..+............+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt-----~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLL-GGDLT-----PARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 32222222111111 112222222 33222 122233344555566667777777788888999999999998765
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
++.... . + +..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.
T Consensus 599 ~~~~~~---~-~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 599 ERILAQ---N-P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred cccccc---c-C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 432110 0 1 111223569999999999752 357999999999999999999999999999999999999999987
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 802 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
+. .+|++|+||||+|++|++||||||.++.+.++++++++++.|++.+.++.+|.|++|.+||+|.+|
T Consensus 674 i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 674 SV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred EE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 63 357799999999999999999999988888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHH-HHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~-~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
|||||||++||||++++|+|||||||||+||+++++.|. ++++...+++|+|+||||++.+..||+|++|++|++++.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999775 4566666889999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchHHHHHh
Q 001189 961 TPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 961 ~~~~l~~~~~~~~~~~~~~ 979 (1128)
+++|++++. +.|..++..
T Consensus 822 t~~eL~~~~-~~~~~l~~~ 839 (1495)
T PLN03232 822 TFAELSKSG-SLFKKLMEN 839 (1495)
T ss_pred CHHHHHhcc-hhHHHHHHh
Confidence 999999754 567766654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=608.49 Aligned_cols=211 Identities=26% Similarity=0.341 Sum_probs=173.1
Q ss_pred cEEEEEEEEEeCC-----------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Q 001189 743 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 809 (1128)
Q Consensus 743 ~i~~~~v~~~y~~-----------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i 809 (1128)
.+.++||++..+. +...+|+|||++|+|||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998741 123699999999999999999999999999999999999774 689999999876
Q ss_pred CCCChHHhhhceEEEcCCCccccc-cHhhccccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 810 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 810 ~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~------~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
. ....|+.+|||+|++.++.. ||+|||.+.. ..+++ .+.+.++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567789999999987764 9999996421 12222 24556666665543 244555332
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hhcCEEEEEeC-
Q 001189 879 -ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 953 (1128)
Q Consensus 879 -~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~-~-~~~D~i~vl~~- 953 (1128)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++.. .++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999865 47999999999984 4 44999999996
Q ss_pred CEEEEecChh
Q 001189 954 GRVLEYDTPE 963 (1128)
Q Consensus 954 G~i~~~g~~~ 963 (1128)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=579.56 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=160.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCccc-cccHhhccccCC-CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLF-SGTVRFNLDPFS-EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf-~~Tv~~nl~~~~-~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.++ +.|+++|+.... .. ....+.++++..++. ........+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-----------~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-----------RLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-----------HHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998754 569999986431 11 122334445554444 3344445689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++++.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999987 999999964 8877776
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-57 Score=551.93 Aligned_cols=464 Identities=16% Similarity=0.139 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001189 472 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 551 (1128)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~ 551 (1128)
..++.++..++....+.+...+++..+++++++.|+.||+++++|++++|+++|++.+...+.. +..++..++.++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456677788888889999999999999999999999999999999999999999998764432 334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH---HHHHHHHHHHH
Q 001189 552 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSM 628 (1128)
Q Consensus 552 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~---~~~~~~~~~~~ 628 (1128)
+++..+++...++++.++++++.+..+..+..+...+......+.+.+++.|.++|+++++ ++.+ +++.+.+.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 5555555554444333333333333333333333333334456678889999999999995 4332 34444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 629 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNG-SAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN 707 (1128)
Q Consensus 629 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~ 707 (1128)
+...+..................+..+ +++.+.+.... .... ...++.+..+...+..++..+.........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANSLGWAD----TNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322211111111000101111100 11111111100 0000 111122222233344566667777777888
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTl 787 (1128)
...+.+|+.++.+.+.+.+.. ...+. +..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 899999999987554332111 11111 123569999999999743 469999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHcc
Q 001189 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 867 (1128)
Q Consensus 788 l~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp 867 (1128)
+++|+|+++|++|+|.+||+|+++++...+|++|+||||+|.+|++|+++| ....++++++++++.+++.+.+.. +
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~ 441 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-E 441 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-c
Confidence 999999999999999999999999999999999999999999999999998 224456677777777666554432 2
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhc
Q 001189 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDC 945 (1128)
Q Consensus 868 ~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~ 945 (1128)
.|. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..|
T Consensus 442 ~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~ 516 (547)
T PRK10522 442 DGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA 516 (547)
T ss_pred ccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhC
Confidence 221 1378999999999999999999999999999999999999999999987654 479999999999999999
Q ss_pred CEEEEEeCCEEEEe
Q 001189 946 DRILLLDSGRVLEY 959 (1128)
Q Consensus 946 D~i~vl~~G~i~~~ 959 (1128)
|+|++|++|+++|.
T Consensus 517 d~i~~l~~G~i~e~ 530 (547)
T PRK10522 517 DRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999987
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-59 Score=536.67 Aligned_cols=444 Identities=25% Similarity=0.345 Sum_probs=334.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++|++++|+. -++|+++||++++||++|++|.||||||||+|+|+|.++|++|.+.. ...
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 46899999999974 57999999999999999999999999999999999999999875432 122
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.|+.|+|+..|+ +.||.|||.+|+.. |..++++..+. .++.+....+ ......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 499999999986 88999999998643 22333322211 1111110000 233446799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh-hHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-EDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~l~~~ 334 (1128)
||||..+++|+|||||||+|+....+.+|+.+.+...+|.++|+|||+++++.. ||||.||.||+.+..++. .++.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~-- 234 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS-- 234 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC--
Confidence 999999999999999999999999999999776666789999999999998765 899999999998854321 1000
Q ss_pred chHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHH
Q 001189 335 GELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYK 414 (1128)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~ 414 (1128)
. .+
T Consensus 235 --------------------------------------------------------~-----~~---------------- 237 (500)
T COG1129 235 --------------------------------------------------------E-----DE---------------- 237 (500)
T ss_pred --------------------------------------------------------H-----HH----------------
Confidence 0 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 415 DALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRL 494 (1128)
Q Consensus 415 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (500)
T COG1129 238 -------------------------------------------------------------------------------- 237 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 495 HDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYA 574 (1128)
Q Consensus 495 ~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 574 (1128)
+ +..+.
T Consensus 238 ----------------------------------l-------v~~Mv--------------------------------- 243 (500)
T COG1129 238 ----------------------------------L-------VRLMV--------------------------------- 243 (500)
T ss_pred ----------------------------------H-------HHHhh---------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 575 AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG 654 (1128)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 654 (1128)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCccccCCCC
Q 001189 655 LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNR 733 (1128)
Q Consensus 655 ~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~-~~~e~~~~~~~~~ 733 (1128)
+ | ++.+ .|. + ...
T Consensus 244 -------------G---------------------------------------------r--~~~~~~~~--~-~~~--- 257 (500)
T COG1129 244 -------------G---------------------------------------------R--ELEDLFPE--P-PEE--- 257 (500)
T ss_pred -------------C---------------------------------------------c--chhhhccc--c-ccc---
Confidence 0 0 0000 000 0 000
Q ss_pred CCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001189 734 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 813 (1128)
Q Consensus 734 ~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 813 (1128)
-+....++++|++.. ..++|+||++++||++||.|--|||+|-++++|+|..++.+|+|.+||.++.-.+
T Consensus 258 ----~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 258 ----GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS 327 (500)
T ss_pred ----CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence 001123677777643 2589999999999999999999999999999999999999999999999988777
Q ss_pred hH-HhhhceEEEcCCC---ccc-cccHhhccccC--CCCCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 814 LM-DLRKILGIIPQSP---VLF-SGTVRFNLDPF--SEHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 814 ~~-~~r~~i~~v~Q~~---~lf-~~Tv~~nl~~~--~~~~~~-~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
+. ..+..|+|||.|- -+| ..+|++|+... ...... -+...-++....+++.++...-.. ......+||||+
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGN 406 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGN 406 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchh
Confidence 66 5677899999886 355 45999999643 111101 233444445556666665332111 123335799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+||+.|||+|..+|+||||||||.|+|..+++.|++.|+++. +|.+||+||.+++++.. ||||+||.+|+++..=+
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999976 57999999999999986 99999999999997533
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=547.41 Aligned_cols=305 Identities=27% Similarity=0.430 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC-CCCC
Q 001189 40 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLP 118 (1128)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~ 118 (1128)
..+.++++|.+++..|.||++...+++.|-..+..++..+...++.++++..|.+|+.++++.++..+......+ .-..
T Consensus 385 ~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G 464 (716)
T KOG0058|consen 385 AVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQG 464 (716)
T ss_pred HHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccc
Confidence 345667889999999999999999999999999999999999999999999999999999998775433211111 2334
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 186 (1128)
.|+|+||+|+||.+++.++|+|+||+|+|||.+|+|||||+||||++++|.++|+|++|.+. .+|++|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 79999999999999889999999999999999999999999999999999999999988642 367889
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|.|+|.||++||+|||.+|.+ .++|++.++++.++.++++..+|+||+|.|||+|..|||||||||||||||++||.
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999965 57899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc-hHHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMEN 344 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 344 (1128)
||||||+|||||++++..+-+ .+....+++|||+|+||++.+++||+|+++++|++++.|+|+|++++. +.|.+++..
T Consensus 625 VLILDEATSALDaeSE~lVq~-aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~ 703 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQE-ALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR 703 (716)
T ss_pred EEEEechhhhcchhhHHHHHH-HHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence 999999999999999887755 555566789999999999999999999999999999999999999987 789888765
Q ss_pred h
Q 001189 345 A 345 (1128)
Q Consensus 345 ~ 345 (1128)
+
T Consensus 704 q 704 (716)
T KOG0058|consen 704 Q 704 (716)
T ss_pred h
Confidence 3
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=504.80 Aligned_cols=481 Identities=21% Similarity=0.277 Sum_probs=339.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.+.+...++..++++++...+.+....+...+|...+++|..--........+ +|++.+..++...-...+.....
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 33445667788899999999999999999999999887766543222222222 35555544433211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
.-..+.+++.+.+|..+..+.-.++++.+.++-....++--+...+....-..+...+.++..+|++.+......+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 12223334444555544433333332222222222222222222223333455677789999999999887766655544
Q ss_pred HHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 627 SMD----KNIRYTLVNMGANRWL-AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN---ITSLLTAV 698 (1128)
Q Consensus 627 ~~~----~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~ 698 (1128)
... .+.+............ .+++ .+...+..+++.+++ . +..+ .|.+++-... ...++...
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm-~lQs~iLg~GA~Lvi-~-ge~t--------~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRM-ALQSAVLGLGAWLVI-K-GEIT--------PGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhcceeeEE-c-CcCC--------cchhhHHHHHhhhhhccHHHH
Confidence 433 3333322222111111 1111 111222222222222 1 2221 1222222222 22355556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEEC
Q 001189 699 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 699 ~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
+..|..+.....+..|+.+++...++...... .| ..+|.+.++++++.=++..+++|+|+||.+.+||-+||||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP----~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAAERMP--LP----APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCC--CC----CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEEC
Confidence 77777888888999999999875443221111 11 1357899999999766666799999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHh
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERA 857 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~ 857 (1128)
|||||||||.++|.|.+.|.+|.|++||-|+.+++++++=++|||+|||-.||+|||+|||.-|. +.+++.+.++.+.+
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lA 449 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999997665 66778899999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEee
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIA 936 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vt 936 (1128)
+.+|.|.++|+||||.+|++|..||||||||++||||++.+|.+++||||-|+||.+.|+.+.++|.+.+ +|+|+|+||
T Consensus 450 gvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred ChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 589999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||.+.+..+|+|+||++|++..+|+.+|.+++
T Consensus 530 HRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 530 HRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=554.47 Aligned_cols=494 Identities=20% Similarity=0.274 Sum_probs=372.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHH
Q 001189 461 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 540 (1128)
Q Consensus 461 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~ 540 (1128)
|....++..+...++.....+.....+.+.-..+-..+|+|.++.+-..-...+.|+++|-++.|++.+++........+
T Consensus 244 ~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w 323 (1381)
T KOG0054|consen 244 LAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLW 323 (1381)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333344444555544455556677888888889999999999999888888999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHH
Q 001189 541 MGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 620 (1128)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~ 620 (1128)
...+..+++...+...+++..+..++ ++++++++..+..+..+..+......+......++|.++|+++||.|+||+.|
T Consensus 324 ~~Plqi~~~l~lLy~~LG~sa~~G~~-~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F 402 (1381)
T KOG0054|consen 324 SAPLQIILALYLLYGLLGPSALAGVA-VMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPF 402 (1381)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHH
Confidence 77766666666665555555444444 33334444444444444444444444444556789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 621 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 699 (1128)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 699 (1128)
.++..+.-+...+..........+..+.......++.++.....+ ..++..+... +-..+++...+..++..++
T Consensus 403 ~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~-----aF~slalfniLr~pl~~~P 477 (1381)
T KOG0054|consen 403 LKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTAST-----AFTSLALFNILRFPLFMLP 477 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhH-----HHHHHHHHHHHHHHHHHHH
Confidence 887765555443333222222222222222222222222111112 2222333222 2233555555666666677
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEEC
Q 001189 700 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 700 ~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
......-+..++++|+.+++..++..+...+. .+.-+.+..|+++|.+|+++++ .++.|+||||+|++|+.+||||
T Consensus 478 ~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG 554 (1381)
T KOG0054|consen 478 SVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVG 554 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEEC
Confidence 77777777899999999999765543322211 1112334469999999999763 3459999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhc
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 858 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~ 858 (1128)
+.|||||||+.+|+|.++..+|+|.++| .++||||.|++|+|||||||.|+.++++++..++++.|+
T Consensus 555 ~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~ 621 (1381)
T KOG0054|consen 555 PVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACA 621 (1381)
T ss_pred CCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHcc
Confidence 9999999999999999999999999998 399999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHHcCCcEEEEeec
Q 001189 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 859 l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~~~~Tvi~vtH 937 (1128)
|.+.++.+|.|..|+|||+|.+||||||||++||||++++++|++||.|.|++|.++-+.| .++|+...+++|+|+|||
T Consensus 622 L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTH 701 (1381)
T KOG0054|consen 622 LKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTH 701 (1381)
T ss_pred CHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999876655 567777778999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 938 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 938 ~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
.++.+.+||.|++|++|+|.+.|+++||++. +..|.++.
T Consensus 702 ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~ 740 (1381)
T KOG0054|consen 702 QLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELA 740 (1381)
T ss_pred chhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHh
Confidence 9999999999999999999999999999965 34566553
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=574.91 Aligned_cols=527 Identities=18% Similarity=0.246 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHG---PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 505 (1128)
+.++...+....|+.+....+........ ...+...++++.++..++.....+.....+.+....+...+|+|+++.
T Consensus 325 ~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l 404 (1522)
T TIGR00957 325 FKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVI 404 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455555565555544322111111 111222233333333444333444556678888889999999999999
Q ss_pred CccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 585 (1128)
Q Consensus 506 p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 585 (1128)
|..++++.+.|+++|+++.|++.+...... +..+....+.++..++++.....+..++.+.++++++++..+..+..+.
T Consensus 405 ~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~ 483 (1522)
T TIGR00957 405 TNSARKSSTVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKT 483 (1522)
T ss_pred ChhhcCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764432 3333333333333332222221112112112222222333333333333
Q ss_pred HHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001189 586 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TATFA 664 (1128)
Q Consensus 586 ~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~~~~ 664 (1128)
.++.....+....+.+.|.++|+++||.|++++.+.+++.+..+...+..........+..+.......++.++ .+.+.
T Consensus 484 ~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 563 (1522)
T TIGR00957 484 YQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYV 563 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455668899999999999999999998887776655544433222222222111111111111111 11222
Q ss_pred HHh-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC-CCc
Q 001189 665 VVQ-NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP-SSG 742 (1128)
Q Consensus 665 v~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p-~~g 742 (1128)
+.. +...+....| ..+++...+..++..+......+.....+.+|+.++++.+++++...+.. ...+ ..+
T Consensus 564 ~~~~~~~l~~~~~f-----~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~~~ 635 (1522)
T TIGR00957 564 TVDENNILDAEKAF-----VSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR---TIKPGEGN 635 (1522)
T ss_pred HhcCCCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc---ccCCCCCC
Confidence 222 1222222112 22333344556777778888888899999999999997654432111100 0111 123
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence 6999999999975445799999999999999999999999999999999999999999999997 599
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
||||+|++|++||+||+.++.+.++++..++++.|++.+.++.+|.|++|.+|++|.+||||||||++||||++++|+|+
T Consensus 703 yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 703 YVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999987666778888999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHH---HcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 903 VLDEATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~---~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|||||||+||+.+++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|++++.|++++++++. +.|..+..
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l~~ 860 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFLR 860 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc-hhHHHHHH
Confidence 99999999999999999998863 34689999999999999999999999999999999999998754 45666654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=552.76 Aligned_cols=300 Identities=29% Similarity=0.499 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++|+|++.+.+|.+|.|.++++.++.+.+..|+..+.+.+..+++++.+.+|+.++++.|.+...+.. ..+.-...
T Consensus 392 v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~ 471 (709)
T COG2274 392 VLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGE 471 (709)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCce
Confidence 3568899999999999999999999999999999999999999999999999999999999876433221 12223357
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~ 187 (1128)
|+++|++|+|+.+ ++++|+|+||+|++||++||||+||||||||+|+|+|+++|++|.+. .+|++||
T Consensus 472 I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 472 IEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred EEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 9999999999864 35899999999999999999999999999999999999999988643 2677899
Q ss_pred EEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||+|++.+|++||+|||.++.+. +.|++.++++.++.++++..+|.|++|.+||+|.+||||||||++|||||+++|+|
T Consensus 551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999875 45899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||||||||||+++++.+.+++.+ ...|+|+|+||||++.++.||||++|++|+|+++|+++|+++.++.|.+++.
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~ 706 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHh
Confidence 999999999999999999997644 5578999999999999999999999999999999999999999888887764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-56 Score=498.25 Aligned_cols=441 Identities=25% Similarity=0.413 Sum_probs=339.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++++++.|+ +-.+++||||++++||++||+|+||+|||||+++|.|+|+|++|.+.. .+.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 3589999999998 357999999999999999999999999999999999999999986533 233
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.||+|.|++.|+ +.||.|||.+|.+. +. +++.+..+..++.-+ | .+....||-|+|||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd----p-------~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD----P-------DAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC----c-------cceeecCCcchhHH
Confidence 599999999997 67999999999653 22 233333333333322 2 23446799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
|.|-+|||++|++||||||||.|-|...+.+|+.+.+....|+|||+|||++.++.. |||+-||.+|+++..-+ ...
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~~ 226 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PVA 226 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CCC
Confidence 999999999999999999999999999999999877667789999999999999775 89999999999763211 000
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
+. + .++
T Consensus 227 -----------------------------------~~--------------t-----------~~e-------------- 232 (501)
T COG3845 227 -----------------------------------ET--------------T-----------EEE-------------- 232 (501)
T ss_pred -----------------------------------CC--------------C-----------HHH--------------
Confidence 00 0 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
+.++
T Consensus 233 -------------la~l--------------------------------------------------------------- 236 (501)
T COG3845 233 -------------LAEL--------------------------------------------------------------- 236 (501)
T ss_pred -------------HHHH---------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
+.+.. ...+.+
T Consensus 237 -------------MvG~~------------------------------------------------v~~~~~-------- 247 (501)
T COG3845 237 -------------MVGRE------------------------------------------------VVLRVV-------- 247 (501)
T ss_pred -------------hcCCc------------------------------------------------cccccc--------
Confidence 00000 000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec-CC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AK 811 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i-~~ 811 (1128)
.++.-|....++++|++..-+.. .+.+++|||+|++||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|+|+ ..
T Consensus 248 -~~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 248 -KPPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325 (501)
T ss_pred -cCCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence 00111233458999999875433 3689999999999999999999999999999999999999999999999997 67
Q ss_pred CChHHhhh-ceEEEcCCCc----cccccHhhccccCCCC----------CHHHHHHHHHHhcHHHHHHHcc---CCcchh
Q 001189 812 FGLMDLRK-ILGIIPQSPV----LFSGTVRFNLDPFSEH----------SDADLWEALERAHLKDAIRRNS---LGLDAQ 873 (1128)
Q Consensus 812 ~~~~~~r~-~i~~v~Q~~~----lf~~Tv~~nl~~~~~~----------~~~~i~~~l~~~~l~~~i~~lp---~Gldt~ 873 (1128)
.++...|+ .++|||.|.. ..+.|+.||+.+.... ....+.+ ...+.++++. .+.++
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-----~a~~li~~fdVr~~~~~~- 399 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-----FARELIEEFDVRAPSPDA- 399 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-----HHHHHHHHcCccCCCCCc-
Confidence 78888776 4999999983 4466999998542211 1122221 2233444432 23333
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
...+||||++||+-+||-|.++|++||..+||.|||..+.+.|++.|.+.. .|+.|++||-+++++.. ||||.||
T Consensus 400 ---~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 400 ---PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred ---chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeee
Confidence 235799999999999999999999999999999999999999999998866 57899999999999988 9999999
Q ss_pred eCCEEEEecChhH
Q 001189 952 DSGRVLEYDTPEE 964 (1128)
Q Consensus 952 ~~G~i~~~g~~~~ 964 (1128)
.+|+++....+++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998877665
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=523.19 Aligned_cols=509 Identities=16% Similarity=0.143 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 497 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 497 (1128)
+++.+++.++...+....+++.+...+.......... .+..+++++.+...+..++..++......+....+|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666667777666654321111101 11222223333444455555555666666777777888
Q ss_pred HHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001189 498 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 498 l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~ 576 (1128)
.+++....++.||+. ++|++++|+++|++.+...+...+..++..++.++...+.+.. ..+...++++.++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888777788888886 7899999999999999888777777777666666655444443 44444343333334444444
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG--- 653 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~--- 653 (1128)
.++.+...+..+......+.+.+.+.|.++|+++|++|+.++...+++.+..+...+..........++.....++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555666666666778889999999999999999999888777777666665555554444444444444332
Q ss_pred -HHHHHHHHHH-HHHhc----CCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001189 654 -GLMIWLTATF-AVVQN----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 724 (1128)
Q Consensus 654 -~~~~~~~~~~-~v~~~----~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e 724 (1128)
..+.+++... .+... +..+ ....++.++.+ +..+..++..+......+.....+.+|+.++++.+++
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t----~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMS----EEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222212 22111 1111 11223323333 3445666777777788888899999999999865332
Q ss_pred Cc-------cccC--CC----C-----C--CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCH
Q 001189 725 AP-------LVIE--SN----R-----P--PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 784 (1128)
Q Consensus 725 ~~-------~~~~--~~----~-----~--~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGK 784 (1128)
.. ...+ .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+|||||||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCH
Confidence 11 0000 00 0 0 0000123569999999999643 369999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccC--------CCCCHHHHHHHHHH
Q 001189 785 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--------SEHSDADLWEALER 856 (1128)
Q Consensus 785 STll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~--------~~~~~~~i~~~l~~ 856 (1128)
|||+++|+|+++|++|+|.+++ |++++||||+|.+|++|+++|+.+. ...++++++++++.
T Consensus 492 STLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 560 (659)
T TIGR00954 492 SSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDN 560 (659)
T ss_pred HHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHH
Confidence 9999999999999999998863 5689999999999999999999753 22467889999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++.+++++ |.|+||..+. +.+||||||||++||||++++|++|||||||++||+++++.+++.+++ .++|+|+||
T Consensus 561 ~~l~~~~~~-~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~is 636 (659)
T TIGR00954 561 VQLTHILER-EGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVS 636 (659)
T ss_pred cCCHHHHhh-cCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEEe
Confidence 999999987 8999999874 568999999999999999999999999999999999999999999987 489999999
Q ss_pred cCchhhhhcCEEEEEe
Q 001189 937 HRLNTIIDCDRILLLD 952 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~ 952 (1128)
||++++..||+|++|+
T Consensus 637 H~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 637 HRKSLWKYHEYLLYMD 652 (659)
T ss_pred CchHHHHhCCEEEEEe
Confidence 9999998899999997
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=502.51 Aligned_cols=305 Identities=29% Similarity=0.459 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-C
Q 001189 36 NSIPVLVTVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP-L 113 (1128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~-~ 113 (1128)
..+.+.++.+.+|.. +.+ |+++....+.++.+...++.|++.+...+|...++..+.+.+..|++.|......... .
T Consensus 234 a~lsiAlvAv~~g~~-ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~ 312 (559)
T COG4988 234 AYLSIALVAVYIGFR-LLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE 312 (559)
T ss_pred HHHHHHHHHHHHHHH-HHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccc
Confidence 333444444555544 455 7999999999999999999999999999999999999999999999987653322211 1
Q ss_pred CCCCCc--EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-----------
Q 001189 114 TSGLPA--ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA----------- 180 (1128)
Q Consensus 114 ~~~~~~--i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~----------- 180 (1128)
....+. ++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+++|++|...
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred cccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH
Confidence 112223 4555999999853 4899999999999999999999999999999999999999987543
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
.|+++++||||+|.+|++||||||.++++ .+++++.++++.+++.++++. |+|.+|.+||+|.+|||||+|||+|||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHH
Confidence 25678999999999999999999999987 678999999999999999999 999999999999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHH
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 338 (1128)
||+++++++||||||||||.++++.|.+.+.+ ..+++|+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 99999999999999999999999999876544 45679999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 001189 339 QKLMENA 345 (1128)
Q Consensus 339 ~~~~~~~ 345 (1128)
++++..+
T Consensus 549 ~~l~~~q 555 (559)
T COG4988 549 ANLLKQQ 555 (559)
T ss_pred HHHHHHH
Confidence 9998653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-52 Score=551.01 Aligned_cols=482 Identities=18% Similarity=0.262 Sum_probs=344.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Q 001189 466 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 545 (1128)
Q Consensus 466 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~ 545 (1128)
+++.++..++.....|.....+.+.-..+...+|+|+++.+...+++.++|+++|++++|++.+...+......+...+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~ 208 (1490)
T TIGR01271 129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQ 208 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666777777788888899999999999999999999999999999998866554433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 546 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
.+++.+++...+.+..++.++ ++++++++..+..+.....++..............|.++|+++||.|++++.+.++..
T Consensus 209 i~~~~~lL~~~~G~~~l~~l~-v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~ 287 (1490)
T TIGR01271 209 VILLMGLIWELLEVNGFCGLG-FLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIK 287 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 333333332233333222222 2223333333333334444444444555667788999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL-TAVLRLAS 703 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~ 703 (1128)
+..+...+..........+..........++. ...+.+.+.. + ......|+ .++++..+..++ ..+.....
T Consensus 288 ~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~-~-~~~~~~ft-----~lal~~lL~~~l~~~lp~~~~ 360 (1490)
T TIGR01271 288 NIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIK-G-IILRRIFT-----TISYCIVLRMTVTRQFPGAIQ 360 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 66665554433332222222221111111111 1111222221 1 11111121 123333333333 35666667
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------------------------
Q 001189 704 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE--------------------------- 756 (1128)
Q Consensus 704 ~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~--------------------------- 756 (1128)
.+.....+++|+.+++..++..+.. .. +....|+++|++|.|+..
T Consensus 361 ~~~~a~~s~~RI~~fL~~~e~~~~~--~~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 361 TWYDSLGAITKIQDFLCKEEYKTLE--YN------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCccccccc--cc------CCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 7778899999999999765432110 00 112347888888887421
Q ss_pred -----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 757 -----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 757 -----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++|
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~ 499 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIM 499 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccC
Confidence 13589999999999999999999999999999999999999999999997 499999999999
Q ss_pred cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 832 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 832 ~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
++||+|||.+....++++..++++.|++.+.++.+|.|.+|.+|++|.+||||||||++||||++++|+|+|||||||+|
T Consensus 500 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 500 PGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred CccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999876556666788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH-HHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 912 DVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 912 D~~t~~~i~~-~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
|+.+.+.|.+ ++....+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. ..|....
T Consensus 580 D~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 9999999997 467766799999999999999899999999999999999999998753 3344433
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=541.30 Aligned_cols=297 Identities=25% Similarity=0.353 Sum_probs=266.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++..............|++
T Consensus 375 ~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~ 454 (686)
T TIGR03797 375 ALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEV 454 (686)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEE
Confidence 34567888888999999999999999999999999999999999999999999999998765422111111111236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|.+. .+|+.|||||
T Consensus 455 ~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 455 DRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 9999999743 46899999999999999999999999999999999999999988542 1456799999
Q ss_pred cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
|+|++|++||+|||.++++.+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||+||+++++.+++.+.+. ++|+|+||||++.++.||+|++|++|+++++|++++++++++.|.+++.
T Consensus 614 EpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999876543 5899999999999999999999999999999999999988888888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=531.90 Aligned_cols=280 Identities=28% Similarity=0.414 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CCC-CCCCcEEEEeEEEEeCCCCCCCce
Q 001189 61 RAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLT-SGLPAISIRNGYFSWDSKAERPTL 138 (1128)
Q Consensus 61 ~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~~~L 138 (1128)
.+++++.+...+..|+..++..+..+.+++++++||.++++.+++...... +.+ .....|+++|++|.|++ ++++|
T Consensus 289 ~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL 366 (588)
T PRK11174 289 AGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLA 366 (588)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeee
Confidence 445555677888899999999999999999999999999987653211111 111 12235999999987763 36799
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcccHHHHHhc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILF 206 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~ 206 (1128)
+|+||++++|+++||||+||||||||+++|+|++ |++|.+.. +|+.|+||||+|++|++||+|||.+
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~ 445 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLL 445 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhc
Confidence 9999999999999999999999999999999999 88775421 3557999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHH
Q 001189 207 GSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285 (1128)
Q Consensus 207 g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~ 285 (1128)
|++ .+++++.++++.|+++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.
T Consensus 446 g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 446 GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 964 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 286 ~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+.+ ....+++|+|+||||++.++.||+|++|++|+++++|+|++++++++.|++++..
T Consensus 526 ~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 526 QAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583 (588)
T ss_pred HHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence 855 4445789999999999999999999999999999999999999998899888754
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=537.93 Aligned_cols=296 Identities=28% Similarity=0.427 Sum_probs=265.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------CCC--C
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN------PPL--T 114 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~------~~~--~ 114 (1128)
+++++|++.+..|.+|+|.++++..++..+..|+..++..+..+.+++.+++|+.++++.+++..... ... .
T Consensus 393 ~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~ 472 (710)
T TIGR03796 393 LILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSP 472 (710)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCC
Confidence 45677889899999999999999999999999999999999999999999999999998765432111 000 1
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------e
Q 001189 115 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I 182 (1128)
Q Consensus 115 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~ 182 (1128)
.....|+++|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 473 ~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 473 RLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 112369999999999843 468999999999999999999999999999999999999999886432 4
Q ss_pred cCcEEEEecCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 183 RGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
|+.|+||||+|++|++||+|||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+|||||+
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999885 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
++|+|||||||||+||+++++.+++.+.+ .++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|+++
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l 708 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARL 708 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHH
Confidence 99999999999999999999999987654 479999999999999999999999999999999999999888888776
Q ss_pred H
Q 001189 342 M 342 (1128)
Q Consensus 342 ~ 342 (1128)
+
T Consensus 709 ~ 709 (710)
T TIGR03796 709 I 709 (710)
T ss_pred h
Confidence 4
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=531.97 Aligned_cols=297 Identities=25% Similarity=0.396 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC-CCCCcE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPAI 120 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~i 120 (1128)
+.++.+|.+.+..|.+|++.+++++.++..+..|+..++..+..+.++..+.+|+.++++.+++...+....+ +....|
T Consensus 400 ~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I 479 (711)
T TIGR00958 400 VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLI 479 (711)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeE
Confidence 3445678888889999999999999999999999999999999999999999999999987654221111111 123469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++.+++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+.. ++++|+|
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 9999999998654578999999999999999999999999999999999999999875432 3567999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999954 6788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
|||||||+||+++++.+++ .. ..+++|+|+||||++.++.||+|++|++|+|+++|+|++++++++.|+++
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999987 22 33689999999999999999999999999999999999999887777654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=520.08 Aligned_cols=300 Identities=32% Similarity=0.526 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.+++++.+.+..+.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++....+..+.......|++
T Consensus 252 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f 331 (567)
T COG1132 252 LVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEF 331 (567)
T ss_pred HHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEE
Confidence 34566777788899999999999999999999999999999999999999999999999865422221111122345999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. +|++|+|||
T Consensus 332 ~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~ 409 (567)
T COG1132 332 ENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409 (567)
T ss_pred EEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEc
Confidence 999999984 468999999999999999999999999999999999999998876543 456799999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|+||++||+|||.+|++ .+++++.++++.+++++++..+|+|++|.+||+|.+||||||||++||||++++|+||+|
T Consensus 410 Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 410 QDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred ccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999987 688999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||+||+++++.+.+.+.. ..++||+|+|+||++.+..||+|++|++|+|++.|+|++|+++++.|++++..+
T Consensus 490 DEaTSalD~~tE~~I~~~l~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 490 DEATSALDTETEALIQDALKK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred eccccccCHHhHHHHHHHHHH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999987653 336789999999999999999999999999999999999999999999998653
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=519.85 Aligned_cols=300 Identities=27% Similarity=0.384 Sum_probs=265.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++.........+....|++
T Consensus 265 ~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T PRK11176 265 FVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEF 344 (582)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEE
Confidence 34566778888899999999999999999999999999999999999999999999998664322111111112235999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 345 ~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 345 RNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 9999999743 468999999999999999999999999999999999999999875422 356799999
Q ss_pred cCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.+|.+ +++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+|
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999853 68899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+++.+.+ ..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|++++..
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999999999999987654 34679999999999999999999999999999999999999998889888753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=534.95 Aligned_cols=488 Identities=18% Similarity=0.237 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--cCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 469 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.++..++...+.+.....+.+.-..+...+|+|+++.+...+. +.+.|+++|.++.|++.+...+......+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666777777888889999999999888776 56899999999999999998875555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+++.+++...+.+..++.+ .++++++++..+..+.....++.....+....+...|.++|+++||.+++|+.+.++..+
T Consensus 375 i~~~~lL~~~lG~~al~gv-~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVGWCALMAV-AVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433444333333 233333344444444333344433444555667889999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 705 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 705 (1128)
.-+...+..........+..+.......++..+ ++.+.+. ++..+... +-..++++..+..++..+...+..+
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~-g~~Lt~~~-----vft~laL~~~L~~Pl~~lp~~~~~~ 527 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLL-GHELTPEV-----VFPTIALLGVLRMPFFMIPWVFTTV 527 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555443333333333333222222222211 1122222 33333222 2233444555566677777777888
Q ss_pred HHHHHHHHHHHhhhcCCCCCcc----c-c---------C--C-----CC-------C-----------------------
Q 001189 706 ENSLNAVERVGNYIELPSEAPL----V-I---------E--S-----NR-------P----------------------- 734 (1128)
Q Consensus 706 e~~~~a~~Ri~~~~~~~~e~~~----~-~---------~--~-----~~-------~----------------------- 734 (1128)
....+++.|+.++++.++..+. . . . . .. +
T Consensus 528 ~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1560)
T PTZ00243 528 LQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCC 607 (1560)
T ss_pred HHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 8899999999999976541100 0 0 0 0 00 0
Q ss_pred ----CCCCCCCccEEEEEEEEEeC--------------------------------------CCCCCceeeeeEEEcCCc
Q 001189 735 ----PPGWPSSGSIKFEDVVLRYR--------------------------------------PELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 735 ----~~~~p~~g~i~~~~v~~~y~--------------------------------------~~~~~~l~~vsl~i~~Ge 772 (1128)
+..+...+.+.++|+++.++ .+.+++|+|+||+|++||
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~ 687 (1560)
T PTZ00243 608 EQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGK 687 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCC
Confidence 00011123467777766532 112358999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+++|+||||||||||+++|+|+++|++|+|.++ ++|+|+||+|++|++||+||+.++.....+++.+
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~ 754 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD 754 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence 999999999999999999999999999999863 4799999999999999999999876655667888
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHH-HHHHHcCCcE
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK-TIREEFKSCT 931 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~-~l~~~~~~~T 931 (1128)
+++.+++.+.++.+|.|++|.++++|.+||||||||++||||++.+|+||||||||++||+.+.+.+.+ ++....+++|
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~T 834 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999998777765 4444557899
Q ss_pred EEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 932 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 932 vi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|||+++.+..||+|++|++|++++.|+++++++. +.|..+..
T Consensus 835 vIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~ 879 (1560)
T PTZ00243 835 RVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATLAA 879 (1560)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHHHH
Confidence 9999999999988999999999999999999999864 34555543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=531.19 Aligned_cols=298 Identities=28% Similarity=0.480 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CCCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~ 119 (1128)
++++++|++.+..|.+|+|.++++..++..+..|+..+...+..+.+++++++|+.++++.+++..... .+.......
T Consensus 394 i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~ 473 (708)
T TIGR01193 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGD 473 (708)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCc
Confidence 345678899999999999999999999999999999999999999999999999999998765432111 111122246
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
|+++|++|+|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +|+.||
T Consensus 474 I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 474 IVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 999999999973 368999999999999999999999999999999999999999875432 456799
Q ss_pred EEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
||||+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999983 467889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||||||||+||+++++.+++.+.. .+++|+|+||||++.+..||+|++|++|++++.|+|+++++..+.|+.+++
T Consensus 632 iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999987754 368999999999999999999999999999999999999988888877653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-53 Score=476.46 Aligned_cols=297 Identities=30% Similarity=0.482 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEE
Q 001189 44 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIR 123 (1128)
Q Consensus 44 ~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 123 (1128)
++..+..-+..+.+|.+......+++.++..|+..|...+..+.++..-+.-+.......+.......+.......|+|+
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~ 355 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFD 355 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEE
Confidence 34445555678899999999999999999999999999999998888877766554433322111111222223469999
Q ss_pred eEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEec
Q 001189 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQ 191 (1128)
Q Consensus 124 ~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q 191 (1128)
||+|+|++ ++++|+++||+|++|+++||||+|||||||++++|+++++ ++|.+.. +|+.||||||
T Consensus 356 dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 99999974 4679999999999999999999999999999999999999 7776432 5677999999
Q ss_pred CCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 192 VSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 192 ~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
+..|||.||.+||.+|++ ..++++.++++.+++++.+..+|+||+|.+||+|..|||||||||+||||+++||+|+++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 999999999999999976 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||+||.++++.+++.+.. ...+||+|+|.||++.++.+|+|+++++|++.+.|+|+|++...+.|..++..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 99999999999999997655 56799999999999999999999999999999999999999988888887753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=525.17 Aligned_cols=290 Identities=30% Similarity=0.481 Sum_probs=259.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-C-CCCCCCcE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P-LTSGLPAI 120 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~-~~~~~~~i 120 (1128)
.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+..++++++|+.++++.+++...... . .......|
T Consensus 385 ~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I 464 (694)
T TIGR03375 385 AIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEI 464 (694)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceE
Confidence 356778898999999999999999999999999999999999999999999999999987654221111 1 11122469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++ .++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +|+.|+|
T Consensus 465 ~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 465 EFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 99999999974 3468999999999999999999999999999999999999999885432 4568999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.++++ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++|||||+++|+++
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999976 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.||+|++|++|+++++|+|+++++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999986543 4468999999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=514.81 Aligned_cols=290 Identities=25% Similarity=0.358 Sum_probs=260.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCC
Q 001189 52 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 131 (1128)
Q Consensus 52 ~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~ 131 (1128)
+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++..... ........|+++|++|+|+.
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~ 352 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRPLQSGRIDIDNVSFAYRD 352 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccCCCCCeEEEEEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999997654321111 11112245999999999974
Q ss_pred CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEecCCCCCccc
Q 001189 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 132 ~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~T 199 (1128)
++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+. .+++.|+||||+|++|++|
T Consensus 353 --~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~T 430 (592)
T PRK10790 353 --DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430 (592)
T ss_pred --CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccch
Confidence 35799999999999999999999999999999999999999987542 2356799999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHH
Q 001189 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279 (1128)
Q Consensus 200 v~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~ 279 (1128)
|+|||.++.+.+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+|||||||+||++
T Consensus 431 i~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 431 FLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 280 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 280 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
+++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++...+
T Consensus 511 t~~~i~~~l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 511 TEQAIQQALAA-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred HHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 99999886643 445799999999999999999999999999999999999999999999887643
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=507.17 Aligned_cols=299 Identities=29% Similarity=0.435 Sum_probs=265.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.+++......+..+....+++
T Consensus 254 ~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 333 (571)
T TIGR02203 254 VVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEF 333 (571)
T ss_pred HHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEE
Confidence 44567888888999999999999999999999999999999999999999999999998765422111111112236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 334 ~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 334 RNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 9999999753 468999999999999999999999999999999999999999876432 345799999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++|++|||.++. +.+++++.++++.|++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|++
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999985 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|+++..
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 9999999999999999887654 4568999999999999999999999999999999999999988778877654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=497.47 Aligned_cols=296 Identities=24% Similarity=0.415 Sum_probs=256.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCCCCCCCCcEE
Q 001189 44 VVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPAIS 121 (1128)
Q Consensus 44 ~~~~~~~~~~~~~lt~~~~f~~l~l~~~l-~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~i~ 121 (1128)
++++|++. ..|.++++.+++++.+...+ ..|+..++..+..+.++..+++||.++++.+++...+ ........+.|+
T Consensus 262 i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~ 340 (574)
T PRK11160 262 MLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLT 340 (574)
T ss_pred HHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEE
Confidence 45566666 47889999988887776554 4588888999999999999999999999876532211 111111234699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +|+.|+||
T Consensus 341 ~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 341 LNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 99999999743 357999999999999999999999999999999999999999885432 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+|++|++||+|||.++.+ .+++++.++++.++++++++. |+|++|.+||+|.+||||||||++|||||+++|+++|
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999864 678899999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++++
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999886544 4468999999999999999999999999999999999999999999988764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=460.35 Aligned_cols=296 Identities=25% Similarity=0.455 Sum_probs=266.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCC-CCCCCCCCcEEEEe
Q 001189 47 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRN 124 (1128)
Q Consensus 47 ~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~-~~~-~~~~~~~~~i~~~~ 124 (1128)
+.+|.+..+.+|+|....+..++-++.+|++.+...+..++.+.+-++++.++++++++.. .|+ +|.......|+|+|
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsn 542 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSN 542 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEE
Confidence 4456677899999999999999999999999999999999999999999999998776532 222 23333345799999
Q ss_pred EEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecC
Q 001189 125 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQV 192 (1128)
Q Consensus 125 ~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~ 192 (1128)
|+|.|++ ++|+|+||||++++|+.+|+|||||+||||++++|.++++..+|.+.. +|++||.||||
T Consensus 543 vtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 543 VTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred eEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 9999974 589999999999999999999999999999999999999998876432 56789999999
Q ss_pred CCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 193 SWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 193 ~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
..|||.||..||.++++ ...|++.++++++++++.+-.+|+|+.|.|||+|-.||||+|||||+||+++++|.+++|||
T Consensus 621 tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 621 TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 99999999999999976 45688889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc-chHHHHHHHHh
Q 001189 272 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENA 345 (1128)
Q Consensus 272 pts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 345 (1128)
+|||||..+++.|-. ++.....++|.|+|.||++.+-+||.|+++++|+|+|.|+|+|+..+ ++.|.+|+..+
T Consensus 701 ATSALDT~tER~IQa-aL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 701 ATSALDTNTERAIQA-ALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred hhhhcCCccHHHHHH-HHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 999999999999965 55656689999999999999999999999999999999999999887 78899998643
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=466.34 Aligned_cols=286 Identities=29% Similarity=0.507 Sum_probs=242.8
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCC
Q 001189 54 GGDLT-PARAFTSLSLFAVLRFPLFML-PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 131 (1128)
Q Consensus 54 ~~~lt-~~~~f~~l~l~~~l~~pl~~l-~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~ 131 (1128)
.|..+ +..+...+..|..+- ++..+ |.++....+...|.+|+.++++.+++...+.+..+.....++++|++|+|++
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~ 348 (573)
T COG4987 270 AGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPG 348 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCC
Confidence 45555 333333333344332 33333 3777889999999999999998877544332212222227999999999985
Q ss_pred CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCccc
Q 001189 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 132 ~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~T 199 (1128)
+ ..++|+|+||++++||++||+|+||||||||+++|.|-++|++|.+.. ++..+++++|.+++|++|
T Consensus 349 ~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~T 427 (573)
T COG4987 349 Q-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427 (573)
T ss_pred C-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHH
Confidence 4 468999999999999999999999999999999999999999886432 344799999999999999
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 200 VRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 200 v~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
+|||+.++++ .++|++.++++.++|++.+...|+|++|.+||+|.+||||||||++|||+|++|++++||||||.+||+
T Consensus 428 lr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 9999999975 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
.|++++.+.+.. ..+|||+|+||||+..++.+|+|++|++|+++++|+|++++.+++.|.++.
T Consensus 508 ~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 508 ITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred hhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 999999986554 557999999999999999999999999999999999999999988888765
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=500.59 Aligned_cols=300 Identities=27% Similarity=0.405 Sum_probs=264.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CCC-CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PNP-PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-~~~-~~~~~~~~ 119 (1128)
++++++|++.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.+++... +.. ........
T Consensus 255 ~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 334 (588)
T PRK13657 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGA 334 (588)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCe
Confidence 3456678888899999999999999999999999999999999999999999999999876543211 111 11111235
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
|+++|++|+|++ .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+
T Consensus 335 I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 335 VEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999973 257999999999999999999999999999999999999999875422 356799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|++|++++.|++++++...+.|.++...
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 999999999999999999987654 34689999999999999999999999999999999999999888888887764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=494.43 Aligned_cols=300 Identities=26% Similarity=0.466 Sum_probs=265.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|.+.+..|.+|+|.+++++.++..+..|+..++..+..+..++++.+||.++++.+++......+.......|++
T Consensus 237 ~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~ 316 (569)
T PRK10789 237 LAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEE
Confidence 34567888888999999999999999999999999999999999999999999999998754321111111112235999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++|+|
T Consensus 317 ~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 9999999743 468999999999999999999999999999999999999999875432 345799999
Q ss_pred cCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|++|++||+|||.++. +.+++++.++++.+++.+++..+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999985 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
|||||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|++|+++++|+++++.++.+.|++++..
T Consensus 476 DEpts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred ECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 999999999999999987644 34789999999999999999999999999999999999999888888887754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=496.78 Aligned_cols=301 Identities=28% Similarity=0.455 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-CC-CCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-PL-TSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~-~~-~~~~~ 118 (1128)
+.++++|++.+..|.+|++.++++..++..+..|+..++..+..+.+++.+++|+.++++.+++.... .+ .. .+...
T Consensus 257 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 336 (576)
T TIGR02204 257 VGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRG 336 (576)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCc
Confidence 34556788888899999999999999999999999999999999999999999999999865432111 11 01 11123
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+.+.++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|.... +++.|
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 599999999998543468999999999999999999999999999999999999999875422 34579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++||||++++|+
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999864 57789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+||||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++++.|+++..
T Consensus 497 ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 497 ILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 9999999999999999999886654 3468999999999999999999999999999999999999988888877654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=503.29 Aligned_cols=299 Identities=27% Similarity=0.446 Sum_probs=266.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCCCCCCCcEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAIS 121 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~-~~~~~~~~~i~ 121 (1128)
+++++|++.+..|.+|+|.++++..+...+..|+..+...+..+.+++++++|+.++++.+++..... ...+.....|+
T Consensus 378 ~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~ 457 (694)
T TIGR01846 378 ILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAIT 457 (694)
T ss_pred HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEE
Confidence 45678889889999999999999999999999999999999999999999999999998765432111 11111224699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++|+|+++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +|..|+||
T Consensus 458 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 99999999743 457999999999999999999999999999999999999999875421 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 537 ~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred ccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999864 67889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|+++++|++++++++++.|++++.
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 9999999999999999987654 3468999999999999999999999999999999999999998888988865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=454.89 Aligned_cols=291 Identities=26% Similarity=0.441 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 121 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 121 (1128)
..++..|.|++..|++|+|.+++...+......|+-.....+.++..++.|++|+.++|...+....+- +.+.....+.
T Consensus 258 s~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m-~LP~P~g~L~ 336 (580)
T COG4618 258 SAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM-PLPAPQGALS 336 (580)
T ss_pred HHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC-CCCCCCceee
Confidence 345678899999999999999999999999999999999999999999999999999998754322221 2222334699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++++++.-| +..+|+|+++||++++|+.++||||||||||||.++|.|..+|.+|.+.. +.++|||+
T Consensus 337 Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 337 VERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred EeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 999999766 45689999999999999999999999999999999999999999886532 23479999
Q ss_pred ecCCCCCcccHHHHHh-cCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+..||+|||.|||. |+.+.|++++.++.+.++.++.+-.+|+||+|.||+.|.+|||||||||+||||||.+|.+++
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred cccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 9999999999999997 887889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||-|+||.+.++.+.+.+...+.+|.|+|+||||++.+..+|+|.+|++|++...|+.+|++++
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999998877777789999999999999999999999999999999998887643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=458.25 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=163.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|.++||+|.|.++. .++++++|-|.+++++++|||||+|||||++++.|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 499999999998663 7899999999999999999999999999999999999999999865422 2344
Q ss_pred EEcCCCc---cccccHhhcccc-CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPV---LFSGTVRFNLDP-FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~---lf~~Tv~~nl~~-~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.-|+-. .++.+.-+++.+ +. ....+++...+.++|+....+..|. .+||+|||.||++||+++.
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 4455432 234466666543 33 2456778888999888754444443 4799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe-cChhHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEEL 965 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~-g~~~~l 965 (1128)
.|.||||||||+|||.++...+.++|.+ ...+||+||||...|.+ +++|++.+||.+... |.....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 9999999999999999999999999988 56789999999999999 999999999988765 555443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=449.13 Aligned_cols=242 Identities=35% Similarity=0.684 Sum_probs=226.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4699999999997544579999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||+|.+|++|+++|++++...++++++++++.+++.+++.++|.++++.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
|||||||++||+.+++.+++.|++.+.++|||+||||++++..||||++|++|++++.|+|++++++. +.|++++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcc
Confidence 99999999999999999999999887889999999999999889999999999999999999999854 67888888766
Q ss_pred hhhH
Q 001189 982 AANA 985 (1128)
Q Consensus 982 ~~~~ 985 (1128)
....
T Consensus 239 ~~~~ 242 (275)
T cd03289 239 RLKL 242 (275)
T ss_pred hHHH
Confidence 5443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=486.25 Aligned_cols=289 Identities=26% Similarity=0.400 Sum_probs=255.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.+++.+++|+.++++.+++.... .........+++
T Consensus 241 ~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~ 319 (544)
T TIGR01842 241 LVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCCCCCeEEE
Confidence 4566888888899999999999999999999999999999999999999999999999775532211 111112236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++|||
T Consensus 320 ~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 320 ENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 9999999742 368999999999999999999999999999999999999999875422 345799999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999986654 778899999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+||+++++.+.+.+.....+++|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999998866443336899999999999999999999999999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=481.54 Aligned_cols=260 Identities=29% Similarity=0.452 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-C-C--CCCCCC
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-P-P--LTSGLP 118 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~-~-~--~~~~~~ 118 (1128)
.++++|.+.+..|.++++.+++++.+...+..|+..++..+..+.+++++.+|+.++++.+++...+. + + ..+...
T Consensus 254 ~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 254 GALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 34567888888999999999999999999999999999999999999999999999998765321111 0 0 111223
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.|+++||+|+|+++ +++|+|+||++++|++++||||||||||||+++|+|+++|++|.+.. +|+.|+
T Consensus 334 ~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 59999999999742 46999999999999999999999999999999999999999876432 245799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+||+|.+|||||||||+|||||+++|+|
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 305 (1128)
||||||||+||+++++.+.+.+.. ..+++|+|+||||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA-ALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEecCC
Confidence 999999999999999999987653 45789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=481.09 Aligned_cols=300 Identities=24% Similarity=0.382 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++...+.. ........
T Consensus 255 ~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (585)
T TIGR01192 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGA 334 (585)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCe
Confidence 3455678888889999999999999999999999999999999999999999999999876543211111 11112235
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++.++
T Consensus 335 i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 335 VEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999974 246999999999999999999999999999999999999999875422 345799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++|++|||.++.+ .+++++.++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 567888899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||+||+++++.+.+.+. ...+++|+|+||||++.++.||+|++|++|++++.|+++++.++++.|++++..
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 99999999999999999987654 345689999999999999999999999999999999999999998889888754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=473.65 Aligned_cols=270 Identities=29% Similarity=0.448 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeE
Q 001189 46 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG 125 (1128)
Q Consensus 46 ~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (1128)
.++++.+..|.+|++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++.....+......+.|+++|+
T Consensus 247 ~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v 326 (529)
T TIGR02857 247 VYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGL 326 (529)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEE
Confidence 34555566889999999999999999999999999999999999999999999997543211111111111236999999
Q ss_pred EEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCC
Q 001189 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVS 193 (1128)
Q Consensus 126 ~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~ 193 (1128)
+|+|++. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+||+|+|
T Consensus 327 ~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 327 SVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred EEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 9999843 358999999999999999999999999999999999999999875421 355799999999
Q ss_pred CCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc
Q 001189 194 WIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272 (1128)
Q Consensus 194 ~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp 272 (1128)
++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++|||||
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999999999864 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE
Q 001189 273 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 317 (1128)
Q Consensus 273 ts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 317 (1128)
||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|
T Consensus 486 ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 486 TAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999987654 44789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=400.56 Aligned_cols=215 Identities=28% Similarity=0.476 Sum_probs=191.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC-CChHHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-FGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i 821 (1128)
.|+++||+++|+.. .+|+|||++|++||+++|+||||||||||+++|.++-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999754 79999999999999999999999999999999999999999999999987743 3678899999
Q ss_pred EEEcCCCccccc-cHhhccccCC----CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+|+|+..||.. |+.+|+.... ..+ .+.-.+.|+++|+.+..+..| .+||||||||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999977 9999996431 122 233455677777777777766 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|||..+|+++|+|||||+|||+....+.+.++++.+ |.|+|+|||.+.++.+ ||||+.|++|+|++.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999999774 7899999999999998 99999999999999999999998764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=425.09 Aligned_cols=296 Identities=30% Similarity=0.510 Sum_probs=264.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CC-CCCC-CCCCcEE
Q 001189 45 VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PN-PPLT-SGLPAIS 121 (1128)
Q Consensus 45 ~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-~~-~~~~-~~~~~i~ 121 (1128)
.+.+...+..|.+|++.+...-.+..++..|+..+...+..+.+++.-++++.+.+..+.+..+ |. ++.. -....+.
T Consensus 185 m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~ 264 (497)
T COG5265 185 MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVA 264 (497)
T ss_pred HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEE
Confidence 3345556678999999999999999999999999999999999999999999999887654322 11 1222 2234699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
|.|++|.|.+ .+|+|+++||++++|+.+++||++|+||||++++|.++|++.+|.+.. .|+.||.|
T Consensus 265 F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 265 FINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 9999999974 589999999999999999999999999999999999999999986543 35569999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+..|||.|+..||.+|++ ..++++.++++.+++++++..+|+|++|.|||+|-.||||+|||||+||+++++|+||+
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999976 46788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||+||+||.++++.|... ++...+|+|.++|.||++.+-.||.|+||++|+|+|.|+|++|+..++.|.+++.
T Consensus 423 ~deatsaldt~te~~iq~~-l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 423 LDEATSALDTHTEQAIQAA-LREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred EehhhhHhhhhHHHHHHHH-HHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 9999999999999999765 4555689999999999999999999999999999999999999999999998873
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=430.89 Aligned_cols=195 Identities=20% Similarity=0.316 Sum_probs=163.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..+++.+|+|.|.++..+.+.++++++..-+++++||+||+||||+++++.+...|.+|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 35999999999988765799999999999999999999999999999999999999999987764 6789
Q ss_pred EEEcCCCccc-cccHhh--cc-ccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~lf-~~Tv~~--nl-~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|..|..+=+ +..+.. -+ ..+...+++++++.+...|+..-+...+ -.+||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcC
Confidence 9999987533 222221 11 1122347889998888866654433322 25699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
+|.+|+|||||++||.++...+-++|+. .+..||+|||+.+++.. |+.+|+.++|+|.-.
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999987 35569999999999998 999999999999764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=429.04 Aligned_cols=228 Identities=23% Similarity=0.361 Sum_probs=200.9
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Q 001189 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIA 810 (1128)
Q Consensus 736 ~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~ 810 (1128)
..||..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3589999999999999997544579999999999999999999999999999999999996 57999999999997
Q ss_pred --CCChHHhhhceEEEcCCCccccccHhhccccCC---CCCHHHH-----HHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 811 --KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 811 --~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i-----~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
..+...+|+.++||||+|.+|++|+++|+.+.. ..++++. .++++.+++ +.++++.+++.+.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~ 225 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNA 225 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCccc
Confidence 345567899999999999999999999998432 2333333 344455543 34567888999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||||+|||||++++|+||||||||++||+.+.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|++.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998888999999999999998 999999999999999
Q ss_pred cChhHHhhcCC
Q 001189 960 DTPEELLSNEG 970 (1128)
Q Consensus 960 g~~~~l~~~~~ 970 (1128)
|+|+++...+.
T Consensus 306 g~~~~l~~~~~ 316 (329)
T PRK14257 306 GETKTIFIHPK 316 (329)
T ss_pred CCHHHHhcCCC
Confidence 99999987553
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=406.44 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=193.4
Q ss_pred EEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 744 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
|++++|++.|... ...+|+||||+|++||++||+|+||||||||++++.++-+|++|+|.+||.|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 246999999999999999999999999999999999999999999999999988777554 5
Q ss_pred hhceEEEcCCCcccc-ccHhhccccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 818 RKILGIIPQSPVLFS-GTVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
|++||+|+|++.|++ .||.+|+.+- ...+ .+++.+.|+.+|+.+...+.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 778999999999997 5999999742 1222 345667777788777776666 68999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||..+|+|||.|||||+|||+|.+.|.+.|++..+ |-||++|||.|+.+++ ||||.||++|+|+|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998653 7899999999999999 9999999999999999999999
Q ss_pred hcCCCch
Q 001189 967 SNEGSSF 973 (1128)
Q Consensus 967 ~~~~~~~ 973 (1128)
.++....
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 8775433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=394.18 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=195.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+|+|||++|.+ +.+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+|||.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999974 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHH--HHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~--~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|-|...||.. ||.+|+.... ..+ ++++.+.++.+++. ++..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 9999996432 122 34566667777764 4666666 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||..+|+|||+|||.++|||-++..+|+-+.++.+ ++|+|+||||+++... +|||.+|++|+++.+++|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999987653 7999999999999877 99999999999999999999999886
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|-
T Consensus 229 n~FV 232 (309)
T COG1125 229 NDFV 232 (309)
T ss_pred HHHH
Confidence 6554
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=374.09 Aligned_cols=219 Identities=26% Similarity=0.449 Sum_probs=198.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-----ceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-----G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|+++.|+.. .+|+|||++|++++++|++|||||||||+|++|.|+.+..+ |+|.++|.+|.+ ++..
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999754 79999999999999999999999999999999999999875 999999999976 4688
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+|+++|+|+|.|.-|..||.||+.++.+ .-|+.+.++|+.+.||+.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999976421 124557888999999987753 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||||.-+|+|||||||||+|||.+...|++.|.++.++-||++|||.|.-..+ +|+...+..|+++|+|..+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999888 99999999999999999999987
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=399.82 Aligned_cols=237 Identities=50% Similarity=0.827 Sum_probs=217.1
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 46799999999997533469999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++|+||+|.+|.+|+++|+.+......+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998654344566788888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|..++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999987678999999999999988999999999999999999999876655555544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-45 Score=375.21 Aligned_cols=219 Identities=30% Similarity=0.510 Sum_probs=191.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~ 819 (1128)
.|++++|+++|+.. .+++||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+++..+ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999654 7999999999999999999999999999999999999999999999999999888654 588
Q ss_pred ceEEEcCCCccccc-cHhhcccc-CC---CCCHHHHHH----HHHHhcHHHH-HHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDP-FS---EHSDADLWE----ALERAHLKDA-IRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~-~~---~~~~~~i~~----~l~~~~l~~~-i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++|+++|...||+. ||+||+.+ .. ..++..+.+ .|+.+||... .+.+| ..||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHH
Confidence 99999999999976 99999975 22 334444433 3555666554 44444 67999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||+.-+|+||++||||+||||.+...+-+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999999988 9999999999999999999999
Q ss_pred hcCCCchH
Q 001189 967 SNEGSSFS 974 (1128)
Q Consensus 967 ~~~~~~~~ 974 (1128)
+..+....
T Consensus 235 ~sd~P~v~ 242 (263)
T COG1127 235 ASDDPWVR 242 (263)
T ss_pred hCCCHHHH
Confidence 86653333
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=392.93 Aligned_cols=231 Identities=37% Similarity=0.603 Sum_probs=209.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996433579999999999999999999999999999999999999999999999999988787788889999
Q ss_pred EcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|..|+++|+.+... ....++.+.++..++.++++.+|.|+++..+..+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3455677777888899999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++.+. +.|..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAY 232 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHH
Confidence 9999999999999999999999987789999999999999779999999999999999999998763 34443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=435.73 Aligned_cols=264 Identities=18% Similarity=0.277 Sum_probs=226.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cC---CCC------CCCCCCCcEEEEe
Q 001189 55 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LL---PNP------PLTSGLPAISIRN 124 (1128)
Q Consensus 55 ~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~-~~---~~~------~~~~~~~~i~~~~ 124 (1128)
+.+|++.+++++.+...+..|+..+...+..+.++.++++||.++++.+++. .. +.. +.......|+++|
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 6899999999999999999999999999999999999999999998642111 00 100 0001124699999
Q ss_pred EEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 125 GYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 125 ~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
++|+|++++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++||+
T Consensus 343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 422 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF 422 (555)
T ss_pred EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence 999997532 246999999999999999999999999999999999999999885421 345699999
Q ss_pred cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
|++++|++|+++|+ ....+++++.++++.+++.++++.+|+|++|. .+|||||||||+||||++++|+++|||
T Consensus 423 q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 423 ADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred cChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999995 23456778889999999999999999999984 789999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 271 DPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
||||+||+++++.+++.+++. ..+++|+|+||||++.++.||+|++|++|++++.
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999998866542 2468999999999999999999999999999863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=371.75 Aligned_cols=203 Identities=32% Similarity=0.496 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.|+++|++++|+. ..+|+||||+|++||+++|+|||||||||||++|.|+.+|++|.+.. +|.+
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999973 57999999999999999999999999999999999999999875432 3557
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
+|+|+|+..|| ..||.|||.++. ..+ +++..+.++..+|.+..+..|. +|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999998 689999999873 112 2344556788899988888884 899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||||+-+|+++|+|||||||||+....+.+-+......|.|.|+|||.+.|.+. ||||+.|++|+|+++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999998766667789999999999999987 6999999999999999999988764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=387.94 Aligned_cols=221 Identities=69% Similarity=1.076 Sum_probs=206.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 45899999999975434799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|.+|+++|+.++.....+++.++++..++.+++.++|.|+++..+....+||||||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~ 962 (1128)
|||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987777999999999999988999999999999988763
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=387.84 Aligned_cols=213 Identities=34% Similarity=0.539 Sum_probs=189.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||+++.+++..++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 3789999999974 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHhhcccc--------CCCCC--H-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVL-FSGTVRFNLDP--------FSEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~--------~~~~~--~-~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
||||.+.. |.-||+|-+.. +...+ | +.+.++|+..++.++.++. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 45599875532 22222 2 3477889998888776653 2579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||+|||||++||....-.+++.++++. ++.|+|+|.||++.+.. ||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999999877 99999999999999999999885
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=383.33 Aligned_cols=226 Identities=43% Similarity=0.707 Sum_probs=207.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++|++++|+.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 358999999999632 3699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||++.+|.+|+++|+.++.. ....++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999986533 34567788888899999999999999999998889999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999998888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=383.99 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=206.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996543369999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|..|+++|+.+... ....++.+.++..++.++++.+|.|+++..+....+||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986533 3455677777888899999999999999988888999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999887789999999999999889999999999999999999987654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=404.80 Aligned_cols=266 Identities=20% Similarity=0.278 Sum_probs=214.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCC
Q 001189 54 GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKA 133 (1128)
Q Consensus 54 ~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~ 133 (1128)
.+.+++..+|+.+++++.+..|+..+|..... ..|+..|+..++..........+....|+++|++++|+. .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~ 93 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-R 93 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-C
Confidence 36788999999999999999888877665433 568888887654211100111223357999999999974 2
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCce--------------eecCcEEEEecCCC
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSW 194 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~--------------~~~~~i~~v~Q~~~ 194 (1128)
.+++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|.+. .+++.++||||+||
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 3579999999999999999999999999999999999986 4566422 23567999999999
Q ss_pred CCcccHHHHHhcCCC---CC-HH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 195 IFNATVRDNILFGSA---FE-PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 195 l~~~Tv~eni~~g~~---~~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|++||+|||.|+.. .+ .+ .+..+++.|++.+++ .+.+++++.+|||||||||+|||||+++|+|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I 246 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPEV 246 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999998642 22 22 255667777765443 3568899999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||||||++||+++.+++.+. +....+++|+|+|||+++++.. ||+|++|++|++++.|+++++.+.+
T Consensus 247 lLLDEPts~LD~~~~~~i~~~-i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 247 LLMDEPTSALDPIATAKIEEL-ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999997764 4544567999999999999887 9999999999999999999987653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=394.16 Aligned_cols=217 Identities=26% Similarity=0.420 Sum_probs=196.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++. .+|+|+||+|+.||.++|+|||||||||||++|+|+.+|++|+|.|||.++++++|.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 48999999999753 2999999999999999999999999999999999999999999999999999999854 7899
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+|+|+..||.. ||++|+.+.-+ ..+.++.++++..++.+.+++.| .+||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 99999986422 22567888888888888888877 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+++|+++|||||.|+||+..+..+...|+++.+ +.|+|.||||..++.. +|||+||++|+|...|+|.|+..++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999888653 6899999999999887 999999999999999999999988766
Q ss_pred chH
Q 001189 972 SFS 974 (1128)
Q Consensus 972 ~~~ 974 (1128)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 554
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=427.52 Aligned_cols=199 Identities=28% Similarity=0.385 Sum_probs=165.8
Q ss_pred CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCcccc-
Q 001189 756 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS- 832 (1128)
Q Consensus 756 ~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 832 (1128)
+.+..|+||+=-++||-.+||+|+||||||||+++|+|-..- .+|+|+|+|.+..+ +..++.+|||.|++.-..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 445799999999999999999999999999999999987532 47999999998754 678999999999996554
Q ss_pred ccHhhccccC------CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC-CE
Q 001189 833 GTVRFNLDPF------SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 901 (1128)
Q Consensus 833 ~Tv~~nl~~~------~~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p-~i 901 (1128)
-||||-|.+. .+.++++ ++++++..++.+.- |..||..|..||..||+||.||--|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 4999988642 1223332 45555555555433 45688888999999999999999999999 88
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh--hhhcCEEEEEe-CCEEEEecChhH
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 964 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~--~~~~D~i~vl~-~G~i~~~g~~~~ 964 (1128)
|+|||||||||.++...|.+.++++. .|+||+.+-|.++- .+..|+++.|+ .|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999976 58999999999876 45699999997 799999988654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=403.21 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=188.0
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999998887654 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|. .|+++|+.+.. ..+. +++.++++.+++.+..++ ...+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999996 59999996421 1222 334556666666554433 34689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999987 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=377.21 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+.. +||+||||+|++|++++|+||||||||||+++|+|+++|.+|+|.+.|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999754 59999999999999999999999999999999999999999999999988765432 56899
Q ss_pred EEcCCC---ccccccHhhccccCC-----------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 823 IIPQSP---VLFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 823 ~v~Q~~---~lf~~Tv~~nl~~~~-----------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
||||.. +-|..||+|-+.... ..+.+.+.++|+++++.++..+. -..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHHH
Confidence 999966 346779998764321 12247899999999998876542 24699999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++.+ |+|||+||||++.+.. ||+|+.|++ ++...|+|++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999775 8999999999999988 999999964 899999999987
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=420.42 Aligned_cols=246 Identities=24% Similarity=0.404 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCC
Q 001189 69 FAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 148 (1128)
Q Consensus 69 ~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G 148 (1128)
...+..|+..+...+..+..++.+++|+.+++..+++...+.+...+....++++|++|+|+. ++++|+|+||++++|
T Consensus 272 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G 349 (547)
T PRK10522 272 LLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCC
Confidence 334668999999999999999999999999976543211111111111236999999999973 357999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
++++|+||||||||||+++|+|+++|++|.+. .++++|+|++|+|.+|++|++|| +...+++++.
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~ 426 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVE 426 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHH
Confidence 99999999999999999999999999987542 14567999999999999999999 4455667777
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CC
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SG 295 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~ 295 (1128)
++++.+++..++.. +++. .+|.+||||||||++||||++++|+++|||||||+||+++++.+++.+..... .+
T Consensus 427 ~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 500 (547)
T PRK10522 427 KWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500 (547)
T ss_pred HHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 78888877766542 3221 14789999999999999999999999999999999999999999887654322 48
Q ss_pred cEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 296 KTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 296 ~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
+|+|+||||++.+..||+|++|++|++++.
T Consensus 501 ~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 501 KTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999975
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=375.96 Aligned_cols=219 Identities=37% Similarity=0.604 Sum_probs=198.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+....++++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999964334699999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||++.+|..|+++|+.+... ....++.+.++..++.+.+..+|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999975432 34556778889999999999999999999888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+|||||||++||+.+...+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988669999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=378.54 Aligned_cols=224 Identities=43% Similarity=0.717 Sum_probs=206.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.+ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999633 369999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|+.|+++|+.+.. ...+.++.+.++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23556677788888999999999999999999889999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||||++||+.+...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=377.14 Aligned_cols=215 Identities=29% Similarity=0.506 Sum_probs=194.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC-CCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 821 (1128)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999876 68999999999999999999999999999999999999999999999999988 47888999999
Q ss_pred EEEcCCC--ccccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSP--VLFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~--~lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|||+|+| .+|..||.+.+.+... .. ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 6899999999876532 22 345777888888887766655 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++.+|+|.++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999764 4799999999999998 9999999999999999999988653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=371.85 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=184.8
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 78888999999999997533469999999999999999999999999999999999999999999999999988888788
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+.|+|+||+|.+|.+|+++|+.++....++++.++++ ++.....|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999997654444443333332 234567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~ 962 (1128)
+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987678999999999999988999999999999998864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=362.31 Aligned_cols=221 Identities=31% Similarity=0.475 Sum_probs=186.2
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHhhh
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~ 819 (1128)
.++++|+++.|+... .++|+||||+|.+||++||+|+||||||||.++|.|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997541 24999999999999999999999999999999999999999999999998766543 234677
Q ss_pred ceEEEcCCCcc-cc--ccHhhccc-cCCC----CCHHHHHHHHHHhcHH-HHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 820 ILGIIPQSPVL-FS--GTVRFNLD-PFSE----HSDADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 820 ~i~~v~Q~~~l-f~--~Tv~~nl~-~~~~----~~~~~i~~~l~~~~l~-~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.+.+|+|||.- ++ .||++-|. +... ....+++++|+.+++. +++.+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999952 22 27776553 2221 2345588888888875 4555665 579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCC--cEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~--~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||.-+|++||||||||+||+-..+.|++.|.+..++ -|.|+||||+..+.. ||||+||++|+++|.++..++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999987754 599999999999999 99999999999999999999987
Q ss_pred cCCCchH
Q 001189 968 NEGSSFS 974 (1128)
Q Consensus 968 ~~~~~~~ 974 (1128)
.+...|.
T Consensus 232 ~~~h~yt 238 (252)
T COG1124 232 HPSHPYT 238 (252)
T ss_pred CCccHHH
Confidence 6444444
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=392.84 Aligned_cols=217 Identities=28% Similarity=0.428 Sum_probs=196.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. ..+++|+||+|++||.+.++|||||||||+|++|+|+..|++|+|.+||.|+..+++ -++.|+
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccc
Confidence 5999999999973 479999999999999999999999999999999999999999999999999999887 467899
Q ss_pred EEcCCCccccc-cHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+|+..||.. ||++|+.|.-. .. ++++.++|+.+++.++-.+.| ..||||||||++|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999986432 22 246888899999988887776 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||..+|++||||||.|+||..-+..++.-|++.. .|.|.|+||||-++... +|||+||++|+|...|+|+|+..++.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9999999999999999999999999999888754 37899999999999877 99999999999999999999998876
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|-
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 5554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=378.33 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=204.1
Q ss_pred EEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 744 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
|+||++.+|..|+++|+.+... ...+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976432 345566777787889999999999999998888899999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+.+.+.+.|++..+++|||++||+++++..||+|++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987677999999999999988999999999999999999888754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=349.38 Aligned_cols=206 Identities=28% Similarity=0.430 Sum_probs=186.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 820 (1128)
|+|+||+++|+.. +++|+||||+|++||.+-|+||||||||||+++|++..+|++|+|.++|.|++++...+ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 68999999999999999999999999999999999999999999999999998887655 7999
Q ss_pred eEEEcCCCccccc-cHhhccccCC----C---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----E---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
||+|+||.-|... ||.||+.+-- . .-.+++.++|+.+||.+-...+| ..||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999987755 9999997421 1 12466888999999999888888 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||++.+|++||-||||-+|||++...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999865 58999999999999998 67999999999987654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=366.34 Aligned_cols=197 Identities=26% Similarity=0.372 Sum_probs=174.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+++++|+++|+. ..||+|+||+|++||+|+|+||||||||||+++|.|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999975 4799999999999999999999999999999999999999999999999988543 35799
Q ss_pred EEcCCCccccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||+|++.||.. ||++|+.+.-+. ..+.+.+.|+.+|+.++-++.| .+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999998 999999753221 2345777888888888877777 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEE
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVL 957 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~ 957 (1128)
|+.+|+||+||||.++||+.|+..+++.|.++. .++||++|||+.++... +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998865 36999999999999877 999999998 5553
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=379.63 Aligned_cols=212 Identities=30% Similarity=0.451 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 820 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999964 369999999999999999999999999999999999999999999999999987664 457888
Q ss_pred eEEEcCCCccccc-cHhhccccCC----CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
|+|+||++.+|.. |+++|+.+.. ..+.. ++.++++..++ .........+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-----------RGAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHH
Confidence 9999999999876 9999996431 12222 23334444443 333344446799999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++++.. ||||++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 7899999999999887 999999999999999999998753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=357.96 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 819 (1128)
.|+++||++.|+.+ +.+|+||||+|++||.|+|+||||||||||+++|.|+.+|++|+|.++|.++.... ...+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999644 58999999999999999999999999999999999999999999999999998887 445678
Q ss_pred ceEEEcCCCccccc-cHhhccccC------------CCCCHH---HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDA---DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~------------~~~~~~---~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
+||+|+|++.|-+. ||.+|+..+ +-++.+ ...++|+++++.+.. -.+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCCc
Confidence 89999999998865 999997421 223333 345556666655433 344578999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 884 Gqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
||+||++|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|||+.-|+++.+.. ||||+-|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 47999999999999988 9999999999999999
Q ss_pred ChhHHh
Q 001189 961 TPEELL 966 (1128)
Q Consensus 961 ~~~~l~ 966 (1128)
+++|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=361.57 Aligned_cols=204 Identities=29% Similarity=0.413 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h-
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~- 817 (1128)
++++||++.|.... ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 36999999999999999999999999999999999999999999999999999888544 3
Q ss_pred hhceEEEcCCCccccc-cHhhcccc---CCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~---~~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
|++||||+|+..|.+. |++||+.. +.... .....+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4569999999998866 99999973 22222 233444455545554333 123468999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVL 957 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~ 957 (1128)
||||||+.+|+|++.||||.+||.++.+.|.+.+++..+ ++|+|+||||......|||++.|.+|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998753 78999999999999999999999999953
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=375.76 Aligned_cols=211 Identities=32% Similarity=0.507 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEECCEecCCCC--hHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 816 (1128)
|+++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 6999999999999999999999999999999999999 999999999999988766 556
Q ss_pred hhhceEEEcCCCccccccHhhccccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|++++|+||++.+|..|+++|+.+... . . ++++.++++..++.+.+.+.+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 7889999999999887799999965311 1 1 2234445555444433222110 46899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987655899999999999876 999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=350.42 Aligned_cols=213 Identities=26% Similarity=0.444 Sum_probs=184.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
+++.+++++|++. ..+++||||+++.||++||.|+|||||||+|++|.+++.|++|.|.+||.|+.+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6889999999763 359999999999999999999999999999999999999999999999999987 56788999999
Q ss_pred EcCCCccccc-cHhhccccCCCC---CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEH---SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~---~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
++-+..++.. |+||||.+|+.. ++ .++.+..+.. +++.....+..+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----------~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----------QLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----------ChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 9987778754 999999876532 22 2333333333 344444445567999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+++|++++|||||||||..+.+.+++.|.+... +++||+.||.|++++. ||||+++++|+++..|+++++.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999998764 8999999999999997 9999999999999999999998653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=388.33 Aligned_cols=220 Identities=20% Similarity=0.374 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC------
Q 001189 742 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------ 812 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~------ 812 (1128)
..|+++|++|+|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999642 13699999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHhhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhc
Q 001189 813 ----------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 876 (1128)
Q Consensus 813 ----------~~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e 876 (1128)
....+|++|+||||+| .+|..|+++|+.+.. ..+.++.. ++ ..++++.+ |++ ...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 688889999996532 12222221 11 23444443 564 45677
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 954 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G 954 (1128)
.+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|||+|||+++++.. ||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998764 47899999999998865 9999999999
Q ss_pred EEEEecChhHHhhc
Q 001189 955 RVLEYDTPEELLSN 968 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~ 968 (1128)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=394.03 Aligned_cols=217 Identities=22% Similarity=0.396 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 3699999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||++|+.+... .+ .+++.++++..++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999975321 12 234556666666666555544 5899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+++|+|||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999988654 7899999999999877 999999999999999999999876644
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 33
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=374.18 Aligned_cols=215 Identities=29% Similarity=0.453 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCCccccccHhhccccCCCC---CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~---~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+|..|+++|+.+.... ...++.+.++..+ ++ ........+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG-----------LNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcC-----------CCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999988999999753211 1223344444433 32 233455678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999865 37899999999999887 99999999999999999999986543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=378.90 Aligned_cols=225 Identities=22% Similarity=0.364 Sum_probs=200.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|.+.. +++.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999742 3579999999999999999999999999999999999997 5664321 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|+||+|++|++||++|+......+++++.++++.+++...++.+|+++++.++++|.+||||||||++|||||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334567788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 346 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 346 (1128)
+||||||++||+.+.+.+.+.+.. ...++|+|+|||+++++..||+|++|++|++++.|+++++.++...++.++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 999999999999999988876553 3458999999999999988999999999999999999999998777787776544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=338.58 Aligned_cols=210 Identities=29% Similarity=0.422 Sum_probs=188.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|.+++|.++|... =-.++++|++||++||+||||||||||+++|.||..|.+|+|.|+|+|....+| .++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 5678999999632 235789999999999999999999999999999999999999999999988777 4567999
Q ss_pred EcCCCccccc-cHhhccccCC----CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~----~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
++|+..||.. ||.+|+..+- +. ..+.+..++.++|+..+..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999987 9999997542 22 3456888999999999999998 47999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
+++-+||+||||.|+|||.-+..+...+.+.. ++.|+++|||.++.+.. +||++++++|||.+.|..+++++...
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999988865 46899999999999988 99999999999999999999987543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=389.53 Aligned_cols=212 Identities=30% Similarity=0.466 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 45788999
Q ss_pred EEcCCCcccc-ccHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|. .|++||+.++.. .+.. ++.++++.++ +.........+||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-----------LENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchHhcCchhhCCHHHHHHHHHHHH
Confidence 9999999886 599999975322 1222 2223333333 3333333445799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+++|++|||||||+|||+.+++.+++.|+++. .++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999875 47899999999999987 999999999999999999999765
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=392.49 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .+++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999964 369999999999999999999999999999999999999999999999999987665 357899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. |+++|+.+... .. ++++.++++..++.++..+. ...||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999975321 22 23455566666665544433 46799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999877 999999999999999999999877654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 44
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=392.47 Aligned_cols=216 Identities=29% Similarity=0.470 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1247999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|. .|+++|+.+.. ..+.. ++.+.++.. |++........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----------GLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 88999999999886 59999997431 12222 233334433 4444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999887 99999999999999999999986
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
.+.
T Consensus 231 ~~~ 233 (343)
T PRK11153 231 HPK 233 (343)
T ss_pred CCC
Confidence 543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=392.71 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++...++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|. .||++|+.+.. ..+ ++++.++++..+ ++........+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-----------LPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CCchhhCChhhCCHHHHHHHHHHHH
Confidence 9999999996 49999997531 112 223444444444 4444445557899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.+++.+++.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988654 7899999999999877 999999999999999999999987654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 44
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=381.05 Aligned_cols=215 Identities=29% Similarity=0.441 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
.|+++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 24699999999999999999999999999999999999999999999999999887887888999
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||+|. ++..||++|+.+.. ..+. +++.++++.+++.++.++ ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 55679999997532 1222 345556666665544443 3468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999977999999999999999999988754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=367.64 Aligned_cols=206 Identities=27% Similarity=0.434 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCC--CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.|+++++++.|+.. +..++|+||||+|++|++.+|||.||+|||||++++.++..|++|.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999853 1246999999999999999999999999999999999999999986532
Q ss_pred ecCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 182 IRGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.|++||+++|++.|++ .||.+||.|.-. .+ ..++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 4567999999999985 899999998632 11 245566677788887776666 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+|||||+.+|+|||.|||||||||++.+.|.+.+.... ..|-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999998665543 349999999999999986 899999999999999999998
Q ss_pred hhcc
Q 001189 332 SNNG 335 (1128)
Q Consensus 332 ~~~~ 335 (1128)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=349.56 Aligned_cols=223 Identities=28% Similarity=0.466 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.+..+|+.++|.. +++++||||+|++||+||+.|||||||||.+.++.|+.+|++|+|.+||.||+.++.+.. |..|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4889999999965 479999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred EEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
||+||+|.+|.+ ||++||...-+....+.+...++..+.+.++.+ .+...-...+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999977 999999643222221222222333344445442 45555566778999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.++||||.+|+||-+-..|++.++.+. .|--|+++-|...+..+ |||.+++.+|+|...|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998876 47789999999876555 9999999999999999999999765
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=372.80 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=187.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++|+++.|+. +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999964 369999999999999999999999999999999999985 699999999999988877788889
Q ss_pred eEEEcCCCccccccHhhccccCCC---C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~---~------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|+||++.+|..|+++|+.+... . .++++.++++.+++.+.+. ......+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999965311 0 1123445555555533322 22445667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999987778999999999999876 9999999999999999999987643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=382.43 Aligned_cols=216 Identities=28% Similarity=0.474 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhh
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r 818 (1128)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999996421 36999999999999999999999999999999999999999999999999997643 35678
Q ss_pred hceEEEcCCC--ccccccHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++|+|+||+| .+|..|+++|+.+.. ..++++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 567889999997532 123322 33344443332 11334555678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||+.+|++|||||||++||+.+...+++.|+++.+ ++|||+|||+++++.. ||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999999987
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=379.57 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCC--ccccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+| .++..|+++|+.+... .. ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 5778899999975311 12 234555666666655444433 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999874 47899999999999866 9999999999999999987643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=365.22 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=191.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---ecCCCChHHhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~---~i~~~~~~~~r~ 819 (1128)
.|+++|+++.|+.. ++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|. |.++.. .-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 37889999999653 7999999999999999999999999999999999999999999999999 776643 3446
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC---------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~---------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+||+|+|+..||.. ||++|+.|+-+ ..+.++.+.|+.++|..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 79999999999965 99999987531 12455677788888877777776 57999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||.-+|++||||||.++||..-++.+.+-|++... +.|+++||||.+++.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999988653 7999999999999887 9999999999999999999999
Q ss_pred hcCCCchH
Q 001189 967 SNEGSSFS 974 (1128)
Q Consensus 967 ~~~~~~~~ 974 (1128)
..+++.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 87766553
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=367.85 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=193.8
Q ss_pred CccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 741 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
.+.|+++|++++|+.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999642 236999999999999999999999999999999999999999999999999988777777788
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.++.|+++.+.....+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999998999999975322 233445555666778899999988999989998999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=370.38 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCcccc-ccHhhccccCCCC-------CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSEH-------SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~~-------~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||+|.+|. .|+++|+.+.... .. +++.++++..+ ++........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHHH
Confidence 999999886 5999999753211 11 12233334433 4444444556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998653 7899999999999876 999999999999999999998754
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 228 ~ 228 (239)
T cd03296 228 P 228 (239)
T ss_pred C
Confidence 3
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=381.49 Aligned_cols=213 Identities=33% Similarity=0.569 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|+. ...+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.+...- ....|++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 3788999999973 23799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||+|.++.. |++|||.++.. ..++++.+.++..++.+. .......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHHH
Confidence 99999998866 99999986532 123466777777666541 123346799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+++|++|||||||+|||+.+...+++.|+++.+ + +||+++||.++++.. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999775 4 699999999999999 999999999999999999998754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=368.52 Aligned_cols=202 Identities=29% Similarity=0.419 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964324699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. .. .++++.++++..++.+...+ ...+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 49999996421 11 12345556666555544433 3357999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
|||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999987 999999999975
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=367.42 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999964224699999999999999999999999999999999999999999999999998764 3567788999
Q ss_pred EcCCCccc-cccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLF-SGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+| ..|+++|+.+.. .... +++.++++..++. ........+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-----------DKANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 99999988 469999986421 1111 2234444444443 333344467999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999977 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=390.61 Aligned_cols=217 Identities=24% Similarity=0.393 Sum_probs=186.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEecCCCChHHhhh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~--G~I~i~g~~i~~~~~~~~r~ 819 (1128)
|.|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 56999999999964 369999999999999999999999999999999999999999 999999999987665 357
Q ss_pred ceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
.|+|++|++.+|.. ||++|+.+.. .... .++.++++..++.++. .....+||||||||++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHH
Confidence 89999999999976 9999997531 1222 2344455555554444 34446899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~---~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||||+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999988654 6899999999999877 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 229 ~p~~~~ 234 (362)
T TIGR03258 229 APADGF 234 (362)
T ss_pred CcCcHH
Confidence 765444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=371.69 Aligned_cols=221 Identities=29% Similarity=0.473 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHhhccccCCCCC-HHHH-------HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~-~~~i-------~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||++.+|.. |+++|+.+..... ...+ ...-....+.++++.+ |++........+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999876 9999986432100 0000 0000111234445443 5666666667789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999999999999999999865 57899999999999977 999999999999999999988653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=372.22 Aligned_cols=211 Identities=30% Similarity=0.456 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~~ 820 (1128)
++++|++++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999642 36999999999999999999999999999999999999999999999999998776 4567888
Q ss_pred eEEEcCCCcccc-ccHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
++|+||++.+|. .|+++|+.+... .. ++++.++++.. |++........+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCHH
Confidence 999999998886 599999964210 01 11223333333 4444455566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999865 37899999999999986 99999999999999999
Q ss_pred hhHHh
Q 001189 962 PEELL 966 (1128)
Q Consensus 962 ~~~l~ 966 (1128)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=390.36 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=178.6
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----hhceEEEcCCCccccc
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG 833 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~ 833 (1128)
+.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++..+ |+.|+||||++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 369999999999999999999999999999999999999999999999999999888877 7789999999999975
Q ss_pred -cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 834 -TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 834 -Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
||++|+.+.. ..+ .+++.++++.+++..+ .+....+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999996421 112 2334555555555444 44445689999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 906 EATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||++||+.+++.+++.|.++. .++|+|+|||+++++.. ||||++|++|++++.|+|++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998864 37999999999999876 999999999999999999999887654443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=387.42 Aligned_cols=216 Identities=24% Similarity=0.407 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+|.. |+++|+.+... .+ ++++.++++..++.++.+ .....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 99999999975 99999975321 12 223445555555544433 344689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998754 6899999999999887 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 654333
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=392.43 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...++++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3899999999964 47999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcCCCcc-ccccHhhccccCC-----C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFS-----E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~-----~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+ |..|+++|+.+.. . ...+.+.++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 5679999986431 0 112346667777666554433 34679999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999977 999999999999999999998753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=377.69 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||++ .++..|+++|+.+.. ..+. +++.++++..++.+++.+. ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 456679999997531 1122 2345555555555544443 4589999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999988999999999999999999988754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=371.12 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 816 (1128)
|+++||+++|+.. ++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999643 6999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.|+.++|+||++.+|..|+++|+.+.. . ... +++.++++..++.+.+. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 788999999999998899999996421 1 111 23344444444431110 33455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999877 99999999999999999999876
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
..
T Consensus 233 ~~ 234 (247)
T TIGR00972 233 NP 234 (247)
T ss_pred CC
Confidence 44
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=379.67 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 816 (1128)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 33456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|++|+| .+|..|+.+|+.+... .+.. ++.++++.+++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 788999999998 6888899999975321 1222 233334443332 12234555789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 47899999999999876 999999999999999999998
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=365.45 Aligned_cols=202 Identities=27% Similarity=0.430 Sum_probs=171.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+... ... +++.++++..+ ++........+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVG-----------LEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999998886 599999964211 111 22334444444 44444444568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999865 37899999999999877 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=361.33 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=150.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+-+.||+|.|+.. .|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 47789999999765 589999999999999999999999999999999999999999987544 345799
Q ss_pred EEcCCCc-ccc--ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPV-LFS--GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~-lf~--~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+.-|... -++ .|-.|.|.-.-....++.+.+|...|+...... -....||||||-|++||-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHT----------ikikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHT----------IKIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccce----------EeeeecCCcchHHHHHHHHhcCCC
Confidence 9888763 222 265555532112233455555655554332111 112469999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC-EEEEEeCCEEEEe-cChhHH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEEL 965 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D-~i~vl~~G~i~~~-g~~~~l 965 (1128)
+||||||||++||.++...+-++|++ ....||+|||+-..+...| ..||+++-.|-+. |..+++
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 99999999999999999999999998 4567999999988887633 3556665444443 555444
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=368.31 Aligned_cols=213 Identities=29% Similarity=0.461 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++|++++|+.. ..++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 126999999999999999999999999999999999999999999999999998765543 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++.+|. .|+++|+.+.. ... .+++.++++..+ ++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG-----------LEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 78999999999987 59999986421 111 123334444444 444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||||++.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999999877 99999999999999999988865
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=370.56 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 820 (1128)
|+++||+++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999622 469999999999999999999999999999999999999999999999999877654 346788
Q ss_pred eEEEcCCCcccc-ccHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
++|+||++.+|. .|+++|+.+... .. ++++.++++.. |++........+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-----------GLADKAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence 999999998886 599999964210 01 12233333333 4444445566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998642 7899999999999876 99999999999999999
Q ss_pred hhHHh
Q 001189 962 PEELL 966 (1128)
Q Consensus 962 ~~~l~ 966 (1128)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=371.18 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999964 369999999999999999999999999999999999975 689999999999864 3345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+.+ ....+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 23344555555543322 12345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
...
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=344.52 Aligned_cols=467 Identities=19% Similarity=0.261 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
|.++...-.+.+.+........+...-.+++.++.++++..|+.-+++...++++.++++|+..|.-.+ ..+..+...+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHHHHH
Confidence 333334444455556666777888999999999999999999999999999999999999999987322 2234455555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH--HH
Q 001189 545 SQLLSTFVLIGIVSTMSLW-AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR--MA 621 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~--~~ 621 (1128)
...+++....+++++.++. +++.+++.++.-+....+..+.. +...+....+..+++..+.|.+..+....-.+ +.
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~-~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHM-AAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 5666666777777765443 33333333322222211111111 11223345577888999999999887654322 22
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 622 DING----KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 622 ~~~~----~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
+.+. ..-+...+..........|..+.+-.+.++.+|+..... ...++ .+.++. ...+.+..++..
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~----w~st~---~a~tiv---lvlLflr~pL~s 281 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG----WASTN---VAATIV---LVLLFLRTPLLS 281 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhh---HHHHHH---HHHHHHhhHHHH
Confidence 2211 111122222333334455666655444444433332211 11111 111111 112233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
++......-.+.+|.+++.++...|.... -....+.+.|. .|+++||.|.|.+.. --+..||++|++||+|-|+
T Consensus 282 ~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFli 355 (546)
T COG4615 282 AVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLI 355 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEE
Confidence 55555555667788888887755332211 11222333453 599999999997653 4588999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHh
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 857 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~ 857 (1128)
|.|||||||++++|+|++.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++- +-+..+++.+...|++.
T Consensus 356 G~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrL 431 (546)
T COG4615 356 GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986542 22224566676666665
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEe
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 935 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~v 935 (1128)
.+.....-. +|- .. ...||-|||+|+++--|++.+.+|+++||=.+.-||.-++...+.+-... .|+||+.|
T Consensus 432 el~~ktsl~-d~~---fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 432 ELAHKTSLN-DGR---FS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHhhhhccc-CCc---cc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 544332211 110 00 13599999999999999999999999999999999999999988765533 58999999
Q ss_pred ecCchhhhhcCEEEEEeCCEEEEe
Q 001189 936 AHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 936 tH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|||-.....|||++.|++|+++|.
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999986
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=369.42 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt--~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|. .|+++|+.+... ....+. ...+.++++.+ |+.. .......+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999964311 111111 11223344443 4442 4455667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999998753 7899999999998876 9999999999999999999887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=387.74 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=188.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|+
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. ||++|+.+.. ... .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997532 112 234555666666665555544 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999887654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 43
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=365.61 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=179.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++||+++|+. .++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+||++.+|.. |+++|+.+..... ..+..+ .+.+.++.++ +++........+||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876 9999997532211 111111 1122222221 23344455567899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999865 47899999999999877 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=385.86 Aligned_cols=216 Identities=27% Similarity=0.460 Sum_probs=181.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EEcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.++. .|+++|+.++.. ....+..+. +.++++. .|++........+||||||||++|||||+++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 599999975321 122221111 1222322 2343334444568999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++|||||||+|||+.+++.+++.|+++. .++|||++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999987 999999999999999999999764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.44 Aligned_cols=220 Identities=25% Similarity=0.397 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~ 813 (1128)
.+.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 356999999999964 369999999999999999999999999999999999986 589999999999853 34
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
...+|++++|+||++.+|..|+++|+.+.. ..+. +++.++++.+++.+. +....+....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHHH
Confidence 567788999999999999899999997431 1222 234455555544221 2234556667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988667899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 001189 965 LLSNE 969 (1128)
Q Consensus 965 l~~~~ 969 (1128)
+....
T Consensus 242 ~~~~~ 246 (260)
T PRK10744 242 IFTKP 246 (260)
T ss_pred HHhCC
Confidence 87644
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=370.06 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=185.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3699999999999999999999999999999999999997 48999999998853 2345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ .........+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 67889999999999988899999974311 11 23345555555543222 12234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999877 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+++.
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=389.51 Aligned_cols=215 Identities=22% Similarity=0.345 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999987665 356799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. |+++|+.+.. .... +++.++++..++.++. .....+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 1121 2345555555554433 33446899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999877 999999999999999999999876543
Q ss_pred c
Q 001189 972 S 972 (1128)
Q Consensus 972 ~ 972 (1128)
.
T Consensus 228 ~ 228 (369)
T PRK11000 228 R 228 (369)
T ss_pred H
Confidence 3
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=378.21 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996422 3699999999999999999999999999999999999999999999999998653 2356
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqrqrl~ 890 (1128)
+|++|+|+||+| .+|..|+.+|+.+.. ..+..+..+ .+.++++. .|+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 578889999997531 122222221 12333443 36653 345667899999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 37999999999999876 99999999999999999999875
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
+
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=405.11 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=215.4
Q ss_pred CCCCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CC-C-------------
Q 001189 55 GDLTPARAFT-S---LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-----PN-P------------- 111 (1128)
Q Consensus 55 ~~lt~~~~f~-~---l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-----~~-~------------- 111 (1128)
|.+|.+..+. + ..++..+..|+..+...+..+.++.++.+|+.++++.+++... +. +
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 6788886554 2 3346677899999999999999999999999999976432110 00 0
Q ss_pred ------CCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-ecC
Q 001189 112 ------PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRG 184 (1128)
Q Consensus 112 ------~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-~~~ 184 (1128)
........|+++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~ 515 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG 515 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC
Confidence 00012235999999999973 357999999999999999999999999999999999999998775432 245
Q ss_pred cEEEEecCCCCCcccHHHHHhcCC--------CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGS--------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~--------~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++||||+|+++++|++|||.++. ..+++++.++++.+++.+.++. |.|++|..+ .+.+||||||||++|
T Consensus 516 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 516 KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAM 593 (659)
T ss_pred cEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHH
Confidence 799999999999999999999863 2346778889999999988877 889999876 577999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
||||+++|+++|||||||+||+++++.+.+.+.+ .|+|+|+||||++.++.||+|++|+.
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999876533 37999999999999999999999973
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=363.07 Aligned_cols=208 Identities=28% Similarity=0.458 Sum_probs=177.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.++.. |+++|+.+.. ... ++++.++++..++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999988875 9999986421 111 23345555555554433 333457999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 6899999999999887 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=375.50 Aligned_cols=214 Identities=30% Similarity=0.495 Sum_probs=182.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 3345567889
Q ss_pred eEEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|+||+| .+|..|+++|+.+.. ..+. +.+.++++..++ .........+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhCCcccCCHHHHHHHHH
Confidence 99999998 567889999996421 1222 223444444444 334455567899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 7899999999999986 999999999999999999998753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=377.20 Aligned_cols=214 Identities=28% Similarity=0.410 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 816 (1128)
|+++|++++|++.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996421 369999999999999999999999999999999999999999999999999863 34456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQR 886 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqr 886 (1128)
.|+.|+|+||+| .+|..|+++|+.+.. ..+.. .+.++++.+ |++ .........||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV-----------GLPEELLARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCChhhhhCCcccCCHHHH
Confidence 788899999998 578789999996431 11222 233334443 343 223445578999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998753 7899999999999876 9999999999999999999
Q ss_pred HHhhc
Q 001189 964 ELLSN 968 (1128)
Q Consensus 964 ~l~~~ 968 (1128)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=370.11 Aligned_cols=220 Identities=23% Similarity=0.432 Sum_probs=185.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~ 813 (1128)
...|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346999999999964 369999999999999999999999999999999999987 689999999999863 45
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 6677889999999999998899999975321 11 233444455544322 2233445556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeC-----------CE
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GR 955 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~-----------G~ 955 (1128)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988667899999999999977 999999996 67
Q ss_pred EEEecChhHHhhcC
Q 001189 956 VLEYDTPEELLSNE 969 (1128)
Q Consensus 956 i~~~g~~~~l~~~~ 969 (1128)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999997643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=368.29 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3899999999964 3699999999999999999999999999999999999974 69999999999988887788
Q ss_pred hhceEEEcCCCccc-cccHhhccccCCC-----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 818 RKILGIIPQSPVLF-SGTVRFNLDPFSE-----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~-----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
|+.|+|+||++.+| ..|+++|+.+... .. ++++.++++.+++.+.+ +........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 89999999999765 5699999964211 01 22344555555543221 12234445689999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=370.47 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=185.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~ 813 (1128)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 356999999999964 3699999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
...+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++.+++.+.+. ........+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 556788999999999999889999996421 11 1 223445555555433221 2334556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999977 9999999999999999999
Q ss_pred HHhhcC
Q 001189 964 ELLSNE 969 (1128)
Q Consensus 964 ~l~~~~ 969 (1128)
++....
T Consensus 248 ~~~~~~ 253 (267)
T PRK14235 248 KMFTNP 253 (267)
T ss_pred HHHhCC
Confidence 987543
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=378.52 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=184.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876 44577889999
Q ss_pred EcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|.. |+++||.++.. ...++..+ .+.+.++.+ |++........+||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999876 99999974321 12111111 122333332 5555555666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
++|||||||+|||+.+.+.+++.|+++.+++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999988 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=377.67 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC---------
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 811 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--------- 811 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHhhhceEEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHcc
Q 001189 812 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNS 867 (1128)
Q Consensus 812 ---------------~~~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp 867 (1128)
.+...+|+.|||+||+| .+|..||++|+.+.. .... +++.++++.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13456788999999987 578789999997532 1222 22344444444421
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-c
Q 001189 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 868 ~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~ 945 (1128)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 23445557899999999999999999999999999999999999999999998864 47999999999999876 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 001189 946 DRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||++|++|++++.|+++++.++
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=354.27 Aligned_cols=191 Identities=29% Similarity=0.427 Sum_probs=166.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-------cCcEEEEec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQ 191 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q 191 (1128)
.+.+++++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|.+..- ...++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999974 579999999999999999999999999999999999999998764331 235999999
Q ss_pred CCCCCc-ccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.||. .||+|||.|+... ..++..+.++..+|..+-+..|. +|||||||||||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcC
Confidence 999885 8999999998543 13467778899999988888884 8999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeC--CeEe
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHE--GMVK 323 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 323 (1128)
|+||||||||+|||+.|+..+.+.+.+.+. .++|+++||||.++.- .+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999988877654 4899999999998854 5899999998 4443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=351.10 Aligned_cols=203 Identities=28% Similarity=0.444 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|+|+.|. ++.+++|+||+|++|++++++|||||||||+|++|.++++|++|.+.. +|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 378999999997 468999999999999999999999999999999999999999986432 56789
Q ss_pred EEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHH--HHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~--~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|||-|+.-|| +.||.|||.+-. .++. ++..+.++..+|+. ..++.| ..|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999998 789999998642 2343 45566777788864 566666 4899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccc-hhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+|+|+||||+||||-++..+-+.++.... -|+|+|+||||+++ ++.+|||.+|++|+++..+++++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887665443 48999999999987 566899999999999999999999987
Q ss_pred c
Q 001189 335 G 335 (1128)
Q Consensus 335 ~ 335 (1128)
+
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=363.83 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----h
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~ 817 (1128)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 36999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hhceEEEcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999998876 99999975321 111111 11122333332 4555555556789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7899999999999878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=378.92 Aligned_cols=216 Identities=29% Similarity=0.440 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.++. .|+++|+.++. ..+..+..+. +.+.++. .|+.........+||||||||++|||||+++
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 59999996421 1222222111 1122222 2343334444567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++|||||||++||+.+.+.+++.|++.. +++|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999864 47899999999999987 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.87 Aligned_cols=213 Identities=25% Similarity=0.438 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999633 359999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 824 IPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 824 v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+||+|. +|..|+++|+.+.. ..+. +.+.++++.+++.+.+ ......||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 999983 67789999996421 1222 2344555555554443 33346899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998653 7899999999999976 999999999999999999999753
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=368.59 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC--CCChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~--~~~~~ 815 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 3899999999964 3699999999999999999999999999999999999987 4999999999987 44555
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC---CC--CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~--~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
.+|++++|+||++.+|.. |+++|+.+.. .. .. +++.++++..++.+.+ .........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 678899999999999976 9999996421 10 11 2334444444432211 123345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999877 99999999999999999999
Q ss_pred HhhcC
Q 001189 965 LLSNE 969 (1128)
Q Consensus 965 l~~~~ 969 (1128)
+....
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=364.99 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=176.1
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.++++||+++|+.+. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877654 3
Q ss_pred h-hceEEEcCCCccccc-cHhhccccC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r-~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
| +.++|+||++.+|.. |+++|+.+. ..... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999998875 999998642 11111 2233344443 44444555567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++++..+|++++|++|++++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4789999999999999889999999999998765
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=358.68 Aligned_cols=198 Identities=27% Similarity=0.458 Sum_probs=169.8
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999642 369999999999999999999999999999999999999999999999998854 4567789999
Q ss_pred cCCC--ccccccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 825 PQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 825 ~Q~~--~lf~~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
||+| .+|..|+++|+.+... ...+++.++++..++.++..+. ...||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3667899999975321 1234566667776665544333 3579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999864 57899999999999987 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=358.63 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=175.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999954 3799999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.++. ...++++.++++..++.+.+.+ ....||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998874 69999996432 1234556667777666554433 34579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999865 47899999999999977 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=355.16 Aligned_cols=203 Identities=31% Similarity=0.518 Sum_probs=173.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee---------cCcEEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVAY 188 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~~ 188 (1128)
+.|+++|++|+|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|.+... +.+|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 36999999999974 2 69999999999999999999999999999999999999999876532 146999
Q ss_pred EecCC---CCCcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 189 VPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 189 v~Q~~---~l~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||.. |-|..||+|-+.+|... |.+++.++++..++.+..+. ....|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 56899999999988432 24778889999998865543 2247999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
.|||||+++|++|+|||||+++|+.++..+++.+.....+|+||++||||++.+. .+|+|+.|+ +++.+.|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999999999865555556999999999999876 589999995 56788999998876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 228 ~~ 229 (254)
T COG1121 228 EE 229 (254)
T ss_pred HH
Confidence 54
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=373.23 Aligned_cols=213 Identities=30% Similarity=0.397 Sum_probs=179.9
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----hhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~ 820 (1128)
.++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56788888864 369999999999999999999999999999999999999999999999999987765443 457
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++.+.+. ....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 999999999885 59999996421 111 223445555555544443 33457999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+++|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 37899999999999876 9999999999999999999998654
Q ss_pred C
Q 001189 970 G 970 (1128)
Q Consensus 970 ~ 970 (1128)
.
T Consensus 253 ~ 253 (269)
T cd03294 253 A 253 (269)
T ss_pred C
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=378.94 Aligned_cols=223 Identities=22% Similarity=0.376 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCC-----------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 743 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-----------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
.|+++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---hhhceEEEcCCC--cccc-ccHhhcccc----CC-CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 812 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 812 ~~~~~---~r~~i~~v~Q~~--~lf~-~Tv~~nl~~----~~-~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
++... +|++|+||||+| .++. .||.+|+.. +. ..+.++ +.++++.+++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 87544 577899999998 4664 599999853 11 123222 33344444441 122344
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
...+||||||||++|||||+.+|++||+||||++||+.++..|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCCchHH
Q 001189 954 GRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 954 G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
|+|++.|+++++.++....|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765444543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.59 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++||+++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999987766553 56799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999886 9999996421 11111111 1223344443 555555666678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 47899999999998877 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=370.15 Aligned_cols=215 Identities=27% Similarity=0.451 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999643347999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEcCCC--ccccccHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+| .++..|+++|+.+.. ..+.++ +.++++..++ +........+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM-----------EDYLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHhhCCcccCCHHHHHHHHHHH
Confidence 999998 345679999997521 122222 3333444444 44444555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 4899999999999878999999999999999999988653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=343.92 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.++++|++..|+.. ++|++|||++++||+++|+||||+|||||+++|+|+.+|.+|+|.++|.||+..+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 37899999999763 79999999999999999999999999999999999999999999999999999998875 6679
Q ss_pred EEEcCCCccccc-cHhhccccCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||||...+|.. ||.|||...... .+.+- ....+++..+-+| -|.......+.+|||||||.|+|||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999965 999999753211 11000 0111333444455 3666677788899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
++|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999874 5699999999999877 9999999999999999999998764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=359.78 Aligned_cols=202 Identities=27% Similarity=0.447 Sum_probs=174.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++++|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999964 36999999999999 99999999999999999999999999999999999987766 677889999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.. |+++|+.+.. ... .+++.++++..++.+.. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 9999998876 9999986421 111 23345555555554433 233457999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987767999999999999976 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=371.00 Aligned_cols=213 Identities=29% Similarity=0.510 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 822 (1128)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999533 36999999999999999999999999999999999999999999999999997765 356788899
Q ss_pred EEcCCCc--cccccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~--lf~~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+|. ++..|+++|+.+... .+. +.+.++++.. |++.........||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI-----------GLEKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHHHhcCCcccCCHHHHHHHHHHH
Confidence 9999985 566799999975321 121 2233334443 4444445555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+...+++.|+++. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998865 47899999999999977999999999999999999998653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=365.90 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 369999999999999999999999999999999999999999999999999987776544 45799
Q ss_pred EEcCCCccccc-cHhhccccCCCCCHH---H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~~~---~---i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|+||++.+|.+ |+++|+.+....... . .........+.++++.+ |++........+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999753210000 0 00000111233344442 555555666678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999987777999999999999987 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=361.29 Aligned_cols=205 Identities=31% Similarity=0.512 Sum_probs=174.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++||+++|+... +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 169999999999999999999999999999999999999999999999999875 445678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|.. |+++|+.+.. ... .+++.++++..+ ++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-----------MEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999885 9999986421 111 223344444444 444444555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++++.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 47899999999999877 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=355.06 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+|+||+|.+|+.|+++|+.+.....+++..++++.+++.+++..+|.|+++.++....+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998755555666778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH-HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~-~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
++||||||++||+.+.+.+.+ .+++.. +++|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999988877 566553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=370.38 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEcCCCccccc-cHhhccccCCC--------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~--------~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.++.. |+.+|+.+... . .++++.++++.+++.+.+.+ ...+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHHH
Confidence 99999877655 99999974210 0 12345555666555444333 33579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999999864 37899999999999976 99999999999999999988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=385.31 Aligned_cols=220 Identities=29% Similarity=0.416 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCC----------------------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 743 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.|+++||++.|+++. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 377777777776531 1379999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHh----hhceEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccC
Q 001189 801 RILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|.++|.++...+...+ |++++|+||++.+|.. |+++|+.+.. ... ++++.++++.+++.++..
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~---- 159 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH---- 159 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh----
Confidence 99999999988776554 3579999999999965 9999997431 112 233445555555544433
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-c
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~ 945 (1128)
....+||||||||++|||||+.+|+||||||||++||+.+++.+++.|+++. .++|||+|||+++++.. |
T Consensus 160 -------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 160 -------SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred -------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 3446899999999999999999999999999999999999999999998864 37899999999999876 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|+|++|++|++++.|++++++..+...|
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 9999999999999999999987654433
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=363.67 Aligned_cols=215 Identities=29% Similarity=0.452 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998776553 4458999
Q ss_pred EcCCCccc-cccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.++ ..|+++|+.+... ....+.. ..+.++++. .|++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLAR--LGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999965321 1111111 112334444 25655566667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999988999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=372.36 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCCCChHHhh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~---G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3599999999996433469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred hceEEEcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++++|+||+|. ++..|+.+|+.+.. ..+. +++.++++.+++.++. .....+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHH
Confidence 89999999983 56779999997431 1222 2344555555554443 334468999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999997799999999999999999999875
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=366.48 Aligned_cols=213 Identities=30% Similarity=0.516 Sum_probs=180.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----------
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 813 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---------- 813 (1128)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999964 37999999999999999999999999999999999999999999999999987543
Q ss_pred ---hHHhhhceEEEcCCCcccc-ccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 814 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 814 ---~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
...+|+.++|+||++.+|. .|+.+|+.... .... +.+.++++.. |++.........|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV-----------GLADKADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhHhhcChhhc
Confidence 2356788999999998885 69999996421 1111 2233333333 4444455556789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999976 99999999999999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++.+..
T Consensus 228 ~g~~~~~~~~~ 238 (252)
T TIGR03005 228 QGKPDEIFRQP 238 (252)
T ss_pred eCCHHHHhcCC
Confidence 99999987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.41 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=180.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 819 (1128)
.|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998776543 3467
Q ss_pred ceEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.++|+||++.+|.. |+.+|+.+. ..... +.+.+.++..+ +.........+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG-----------LRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHH
Confidence 89999999999876 999999642 11111 12333344433 333334445689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998653 6899999999999987 99999999999999999999876
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=384.46 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .|+.|
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++.+|.. ||.+|+.+.. .... +++.+.++..++.++. .....+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999976 9999997532 1222 2344455555554433 3344679999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||+++|++|||||||++||+.++..+.+.|+++. .+.|+|+|||+++++.. ||||++|++|++++.|+|+++..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887754 37899999999999877 99999999999999999999998765
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 4443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=366.45 Aligned_cols=219 Identities=24% Similarity=0.386 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999964 369999999999999999999999999999999999997 3 59999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... ..+. ++.++++..++.+.+ .........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67889999999999998899999964311 1112 233334444433221 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998777999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
++..
T Consensus 243 ~~~~ 246 (259)
T PRK14274 243 SNPD 246 (259)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=359.38 Aligned_cols=202 Identities=22% Similarity=0.371 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876554 2468999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. .... +++.++++..++ +........+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----------EHLLDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHHhCChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996531 1122 223334444444 4444445568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999865 37899999999999887 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=363.85 Aligned_cols=217 Identities=26% Similarity=0.445 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 821 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999964 36999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCCcccc-ccHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++.+|. .|+++|+.+.. .....+..+ .+.+.++. .|++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998886 59999996421 111111111 12334443 25555556666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 9999999999999999999999999998865 47999999999999977 9999999999999999999987543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=346.97 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=164.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+...+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999965434699999999999999999999999999999999999999999999999988765 5667889999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+|..|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 35799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=367.32 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 815 (1128)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999964 3699999999999999999999999999999999999985 7999999999986532 34
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ..... ++.++++.+++.+. +.........+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-------TSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCChhhCCHHHHHH
Confidence 5678899999999998899999997421 11221 23344444443211 1223345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||+|||+++++.+ ||||++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999877 99999999999999999999976
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
++
T Consensus 243 ~~ 244 (258)
T PRK14268 243 NP 244 (258)
T ss_pred CC
Confidence 54
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=364.22 Aligned_cols=219 Identities=29% Similarity=0.447 Sum_probs=183.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
|.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 45899999999964 3699999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. . .. ++++.++++.+++.+. +.........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-------VKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999996421 1 11 2233444444443221 22334556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999999877 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
....
T Consensus 233 ~~~~ 236 (250)
T PRK14240 233 FTNP 236 (250)
T ss_pred HhCC
Confidence 7543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=366.08 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=181.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--------
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-------- 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-------- 813 (1128)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++....
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 56999999999964 36999999999999999999999999999999999999999999999999886421
Q ss_pred -----hHHhhhceEEEcCCCccccc-cHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhh-hcCC
Q 001189 814 -----LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQV-SEAG 878 (1128)
Q Consensus 814 -----~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g 878 (1128)
...+|+.++|+||++.+|.. |+++|+.+.. .... +++.++++.. |+.... ....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~ 150 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV-----------GIDERAQGKYP 150 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCChhhhhCCc
Confidence 24567889999999999975 9999986421 1111 2233333433 343332 4456
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999999875 47999999999999987 999999999999
Q ss_pred EEecChhHHhhcC
Q 001189 957 LEYDTPEELLSNE 969 (1128)
Q Consensus 957 ~~~g~~~~l~~~~ 969 (1128)
++.|+++++.+..
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999987543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=366.59 Aligned_cols=211 Identities=26% Similarity=0.445 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988777778888999
Q ss_pred EcCCCccccc-cHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||++.++.+ |+.+|+.+... .. ++++.++++..++. .........||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-----------HLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-----------HHHcCCcccCCHHHHHHHHH
Confidence 9999988876 99999975310 01 12334444444443 33444557899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999877 99999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=360.61 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++|++++|+... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|. .|+++|+.+.. ... ++++.++++..++.+ .......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999999887 59999986421 111 223444445444443 334444689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 963 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~--~G~i~~~g~~~ 963 (1128)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++++.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999864 37899999999998876 99999999 79999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=375.25 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCC--------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001189 743 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 814 (1128)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999988765
Q ss_pred H---HhhhceEEEcCCCc--cccc-cHhhcccc----CCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 815 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 815 ~---~~r~~i~~v~Q~~~--lf~~-Tv~~nl~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
. .+|++|+||||+|. ++.. |+.+|+.. ...... +++.++++.+++.+ .........
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 4 45778999999993 5543 88887741 111121 23444455544421 122334568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
||||||||++|||||+.+|+|||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998653 7899999999999987 9999999999999
Q ss_pred EecChhHHhhcCCCchHH
Q 001189 958 EYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 958 ~~g~~~~l~~~~~~~~~~ 975 (1128)
|.|+++++.+++...|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999999876545544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=361.05 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 821 (1128)
.|+++|++++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEEcCCCccccc-cHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+|+||++.+|.. |+++|+..... ....+..+. +.+.++.++ +++.........||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999975 99999965221 111111111 112222221 1222233445689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. |||+++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999998865 47999999999998877 99999999999999999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=358.29 Aligned_cols=200 Identities=29% Similarity=0.459 Sum_probs=169.4
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999965224699999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
||++. ++..|+++|+.+.. .... +++.+.++..+ ++.........||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG-----------LEGLRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99983 56779999996421 1111 22333444443 44444445578999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998754 7899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.89 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=180.0
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++|++++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998653 2345
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
.|+.++|+||+| .+|..|+++|+.+.. ....++..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKK--VGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 577789999996421 122222111 12233333 2454 2345556789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999877 99999999999999999999875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=362.87 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 822 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 889999999964 36999999999999999999999999999999999999999999999999998777644 567899
Q ss_pred EEcCCCccccc-cHhhccccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.+|.. |+++|+.+... .+.++. ...+.++++.+ |++.........||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 99999975321 111111 11233445443 55555666677899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998765 47899999999988877 99999999999999999998864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=361.92 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--------hH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--------~~ 815 (1128)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999964 36999999999999999999999999999999999999999999999999986532 24
Q ss_pred HhhhceEEEcCCCcccc-ccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 816 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.+|+.++|+||++.+|. .|+++|+.+. .....++..+ .+.+.++.+ |++........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999998886 5999999642 1112111111 122334432 4554455666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988654 7899999999999977 999999999999999999998754
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=368.05 Aligned_cols=213 Identities=22% Similarity=0.374 Sum_probs=183.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+. +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 3699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEcCCCcccc-ccHhhccccCC--C------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS--E------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~--~------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+|+||++.+|. .|+++|+.+.. . .. ++.+.++++..++.+ .......+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-----------LADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCChHHHHHH
Confidence 99999998875 59999996531 0 01 123444455544443 34445578999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||++++|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998653 7899999999999877 9999999999999999998876
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=369.18 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||+|. ++..|+.+|+.+.. ...++ ++.++++.+++.++. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999983 66779999997421 12232 234455555554443 334468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=364.91 Aligned_cols=218 Identities=28% Similarity=0.414 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC---CCC--CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~---~~p--~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3699999999999999999999999999999999997 454 589999999998754 245
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+. +.+.......+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 1 1223444444443221 123345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998678999999999999876 9999999999999999999998
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
++.
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=364.51 Aligned_cols=218 Identities=25% Similarity=0.407 Sum_probs=182.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CC---CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p---~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 36999999999999999999999999999999999995 46 499999999998643 344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. . .. ++++.++++.+++.+. +.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------VKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-------HHHHHhcCcccCCHHHHH
Confidence 5788899999999999899999996421 1 11 1223334444443321 223445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=364.15 Aligned_cols=211 Identities=27% Similarity=0.422 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988877777889999
Q ss_pred EcCCCcc-ccccHhhccccCCC---C----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVL-FSGTVRFNLDPFSE---H----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~~~---~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+ +..|+++|+.+... . .+..+.++++..++. .........||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-----------HLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56799999865321 1 122344444544443 334444568999999999999999
Q ss_pred c------cCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 896 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 896 l------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+ .+|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999865 47899999999999986 9999999999999999998886
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=357.69 Aligned_cols=207 Identities=27% Similarity=0.410 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh---h
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---R 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---r 818 (1128)
|+++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 369999999999999999999999999999999999999999999999999988765443 3
Q ss_pred -hceEEEcCCCcccc-ccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 819 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 819 -~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++. .|++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEK--VGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 5999999642 111111111 011233333 24544455555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 957 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~ 957 (1128)
|++.+|+||||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999865 378999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=369.60 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHh
Q 001189 743 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~ 817 (1128)
.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hhceEEEcCCCc--cccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r~~i~~v~Q~~~--lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|+.++|+||+|. +|..|+.+|+.+... .. ++++.++++.+++.+++.+ ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 889999999984 666689999965321 12 2345555666666554444 346899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=366.34 Aligned_cols=218 Identities=25% Similarity=0.462 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4999999999964 369999999999999999999999999999999999865 7899999999998653 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|.+|+++|+.+.. .. . ++.+.++++..++.. ++.........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5688899999999999889999986421 11 1 122333444433321 1123345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
.+.
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=368.59 Aligned_cols=215 Identities=26% Similarity=0.442 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999998878778889999
Q ss_pred EEcCCCc-cc-cccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPV-LF-SGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~-lf-~~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+|. +| ..|+++|+.+... ... +++.++++..++. ........+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-----------ERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCCcccCCHHHHHHHHHHH
Confidence 9999984 44 4589999864311 111 2233444444433 3334455789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 7899999999999888999999999999999999998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=356.22 Aligned_cols=203 Identities=29% Similarity=0.481 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+ ++++|+|+||++++|++++|+||||||||||||+|+|.++|.+|.+.. +.+.+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 368999999999999999999999999999999999999998875432 22369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||||.+.. +..||+|-+.+|+.. |.+.+.++++.+++.+..++. ...||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999755 688999999998521 234567778888888766432 257999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
.|||||+++|+|++||||||+||....-.+++.+.+.. .+|+|+|+|+||+... +.||+++.|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998766554 4599999999999875 579999999999999999999887
Q ss_pred hcc
Q 001189 333 NNG 335 (1128)
Q Consensus 333 ~~~ 335 (1128)
+..
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 653
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=365.60 Aligned_cols=218 Identities=25% Similarity=0.441 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 479999999999999999999999999999999999997 589999999999864 3345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.|+|+||++.+|..|+++|+.+.. . .. ++++.++++..++.+.+ +...+....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 6788999999999999889999997521 1 11 22344445555443222 23455667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|++|||||||++||+.+...+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999999997
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 251 ~~~ 253 (267)
T PRK14237 251 TNP 253 (267)
T ss_pred cCC
Confidence 643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=364.40 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999864 3344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... . . ++++.++++..++++. ..........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHHH
Confidence 57888999999999998999999974311 1 1 1223334444333210 012234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 6543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=358.67 Aligned_cols=210 Identities=28% Similarity=0.437 Sum_probs=177.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 822 (1128)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998777654 367899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~-~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.+|.. |+++|+.+... .... ...++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 99999964211 1111 1122222221 23334455567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++++.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999998653 7899999999999987 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=358.15 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=170.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999522 4799999999999999999999999999999999999999999999999999876643 46778
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. .. .++++.++++..++.+.+.+ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 11 12345555666555544333 3357999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
|||+.+|++|||||||++||+.++..+.+.|++.. +++|+|+|||+++++.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=362.15 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHh
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 817 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 369999999999999999999999999999999999999999999999998731 223456
Q ss_pred hhceEEEcCCCccccc-cHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+.++|+||++.+|.+ |+++|+... ......+.. ..+.++++.+ |++........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999999875 999998631 111111111 1123334332 455555555678999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||++.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999865 37999999999999976 99999999999999999988754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=362.55 Aligned_cols=220 Identities=22% Similarity=0.391 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCCC--Ch
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~~--~~ 814 (1128)
+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 56999999999964 369999999999999999999999999999999999986 4 689999999998653 34
Q ss_pred HHhhhceEEEcCCCcccc-ccHhhccccC----CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 815 MDLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
..+|+.++|+||++.+|. .|+++|+.+. .... ++++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 467888999999999887 5999999642 1111 123344444444432221 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|||+|||+++++.. ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999876 99999999999999999999
Q ss_pred HhhcCC
Q 001189 965 LLSNEG 970 (1128)
Q Consensus 965 l~~~~~ 970 (1128)
+...+.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 876543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=362.51 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++|+++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .|
T Consensus 38 ~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 469999999952 3699999999999999999999999999999999999999999999998 39
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|..|+++|+.+.....+.++.+.++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999976433344456677788888888999999999888888899999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+...+.+.+ +....++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999888754 555567999999999999988999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=374.53 Aligned_cols=224 Identities=21% Similarity=0.385 Sum_probs=182.8
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHh
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
|+++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996432 359999999999999999999999999999999999998 489999999999998887665
Q ss_pred hh----ceEEEcCCCc--ccc-ccHhhcc----ccCCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001189 818 RK----ILGIIPQSPV--LFS-GTVRFNL----DPFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 882 (1128)
Q Consensus 818 r~----~i~~v~Q~~~--lf~-~Tv~~nl----~~~~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LS 882 (1128)
++ .|+||||+|. ++. .|+.+++ ....... .+++.++++.+++.+. .........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999994 443 2666544 2221111 2334555555555321 122345557899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+.+|+|||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCCchHH
Q 001189 960 DTPEELLSNEGSSFSK 975 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~ 975 (1128)
|+++++.+++...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999999876555543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=437.55 Aligned_cols=220 Identities=27% Similarity=0.398 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996333579999999999999999999999999999999999999999999999999975 4566788999
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. |++|||.++.. ... +++.+.++.. |++........+|||||||||+||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999875 99999975421 121 2233334443 44444555567899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|+.+|+||||||||+|||+.+++.+++.|++..+++|||++||+++++.. ||||++|++|++++.|++.+|.++.+..|
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy 1155 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcE
Confidence 99999999999999999999999999999998778999999999999987 99999999999999999999988766444
Q ss_pred H
Q 001189 974 S 974 (1128)
Q Consensus 974 ~ 974 (1128)
.
T Consensus 1156 ~ 1156 (2272)
T TIGR01257 1156 Y 1156 (2272)
T ss_pred E
Confidence 3
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=362.99 Aligned_cols=218 Identities=26% Similarity=0.430 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999964 3799999999999999999999999999999999999984 899999999998653 234
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ...+ +++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999997421 1111 2234444444443222 22345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987677999999999998876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 643
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=362.57 Aligned_cols=203 Identities=29% Similarity=0.401 Sum_probs=175.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999964 36999999999999999999999999999999999999999999999998763 4678899
Q ss_pred EEcCCCcccc-ccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+||++.+|. .|+++|+.+... ..++++.++++..++.+ .......+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 12344555555555543 3344456899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
+|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999876 9999999999999988764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=375.37 Aligned_cols=203 Identities=28% Similarity=0.468 Sum_probs=173.3
Q ss_pred EeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 752 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
+|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999876 3456788999999999988
Q ss_pred cc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 832 SG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 832 ~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
.. |+++|+.++.. .. ++++.++++..++ +........+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-----------GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 99999975321 11 1234444444444 333344456899999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||++||+.+.+.+++.|++.. +++|||++||+++++.. ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999875 47899999999999987 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.70 Aligned_cols=218 Identities=21% Similarity=0.398 Sum_probs=185.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 369999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
.+|+.++|+||++.+|..|+++|+.+... . .++++.++++.+++.+.+. ........+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67889999999999988899999975321 1 1233444555555544332 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEEe
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 959 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~---------~G~i~~~ 959 (1128)
+|||||+++|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999999887 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001189 960 DTPEELLSNE 969 (1128)
Q Consensus 960 g~~~~l~~~~ 969 (1128)
|+++++.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=360.93 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999964 36999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... ... +.+.++++..++.+. +.........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67889999999999998899999975311 111 223333444444322 223355667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999988 8999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=356.28 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=170.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|+.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 4699999999999999999999999999999999999999999999999999876543 46788
Q ss_pred eEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|.. |+++|+.+.. ... ++++.++++..++.+. ......+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHH
Confidence 9999999998875 9999996431 111 1234445555444433 3334467999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
|||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47999999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=368.70 Aligned_cols=218 Identities=22% Similarity=0.373 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998754 3456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
+|+.|+|+||++ .+|..|+++|+.+.. ..+.++..+. +.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577889999996421 1222222111 1233333 2444 2345556789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998653 7899999999999977 999999999999999999998653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=364.48 Aligned_cols=218 Identities=25% Similarity=0.438 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCCC--hHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 816 (1128)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 578999999964 379999999999999999999999999999999999986 47999999999886543 235
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++..++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 12233444444432211 12345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999877 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+.+.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=363.95 Aligned_cols=218 Identities=27% Similarity=0.452 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 744 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998776543
Q ss_pred ---hhhceEEEcCCCc--ccc-ccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 817 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 817 ---~r~~i~~v~Q~~~--lf~-~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
+|+.|+|+||++. ++. .|+++|+.+. ......+. ...+.++++.+ |++ .........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 443 5999998521 11111110 11122333332 443 23455567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998653 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q 001189 963 EELLSN 968 (1128)
Q Consensus 963 ~~l~~~ 968 (1128)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=361.23 Aligned_cols=218 Identities=24% Similarity=0.387 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 3699999999999999999999999999999999999885 799999999998653 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
..|+.++|+||++.+|..|+++|+.+... . .. +++.++++.+++.+. +..........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE-------VKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHHH
Confidence 56888999999999998999999974311 1 11 233445555444221 122344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767999999999999877 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
...
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=340.61 Aligned_cols=211 Identities=30% Similarity=0.512 Sum_probs=178.0
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.+.|++++++++|. ++.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35699999999996 478999999999999999999999999999999999999999986532
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcC----CCCCHHHHH----HHHHHhCcHHH-HhcCCCCCcccccCCCCCCChHHH
Q 001189 182 IRGTVAYVPQVSWIF-NATVRDNILFG----SAFEPARYE----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~~~~~~----~~~~~~~l~~~-~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
++.++|+++|+-.|| +.||+||+.|- ...+++.++ .-++.++|... .+.+| ..||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 456799999999999 67999999984 223444433 34678898877 77777 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
+|+|||||+..||+++++||||++|||.+...+-+ +++.. .-|.|+|+||||++.+.. ||||+++.+|+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999998776654 55432 238999999999998775 799999999999999999
Q ss_pred hHHhhcch-HHHHHH
Q 001189 329 EDLSNNGE-LFQKLM 342 (1128)
Q Consensus 329 ~~l~~~~~-~~~~~~ 342 (1128)
+++.+... ..++++
T Consensus 231 ~el~~sd~P~v~qf~ 245 (263)
T COG1127 231 EELLASDDPWVRQFF 245 (263)
T ss_pred HHHHhCCCHHHHHHh
Confidence 99987643 344443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=366.90 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~i 821 (1128)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||++. ++..|+.+|+.+.. ..... ++.++++..++.+ .......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-----------FRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-----------HhcCCchhCCHHHHHHHHHH
Confidence 99999985 56678999986421 11222 2333444444433 23344568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999999999999998754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=361.42 Aligned_cols=218 Identities=24% Similarity=0.415 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999964 3699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
..|+.++|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+ ++.+..+....+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 67888999999999998899999975321 11 122333444433322 2233456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987767999999999999976 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
.+.
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 644
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=338.70 Aligned_cols=207 Identities=26% Similarity=0.393 Sum_probs=175.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCC-------------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------------- 178 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~------------------- 178 (1128)
+.++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++.+..+...+.
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999997 367999999999999999999999999999999999988765531
Q ss_pred ceeecCcEEEEecCCCCCcccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 179 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 179 ~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
...+|++||+|+|.|.-|..||+|||.+|... . ++.+++.++.++|.+.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 12256789999999999999999999998421 1 2456777888888776542 24456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||.-+|+|||||||||||||.+..+|.+ ++...+++-|+|+|||+++...+ .|++..+..|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999976 45555578899999999998876 49999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87664
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=358.39 Aligned_cols=211 Identities=25% Similarity=0.405 Sum_probs=172.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhh
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r 818 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999987663 4678
Q ss_pred hceEEEcCCC--ccc-cccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSP--VLF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~--~lf-~~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++ .++ ..|+++|+.+. ....+++..+.. ..+.++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 46999998632 111111111100 01233332 443 3456666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998754 7899999999999986 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.11 Aligned_cols=219 Identities=25% Similarity=0.393 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 814 (1128)
..++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 35999999999964 369999999999999999999999999999999999997 699999999999853 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CCCHH-----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~-----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. ...++ .+.++++..++. .++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 56788999999999999889999997421 11111 122233332221 1333445566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999877 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
..++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=341.21 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=161.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
++|++.+|..|+++|+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 99999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
|||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998865 47899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=363.14 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988887778888999
Q ss_pred EcCCCcc-ccccHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVL-FSGTVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||++.+ +..|+++|+.+... .. ++++.++++..++. .........||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHHH
Confidence 9999864 45699999965311 01 12334444444443 33444556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||++.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998753 6899999999999976 99999999999999999988753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=369.10 Aligned_cols=220 Identities=21% Similarity=0.387 Sum_probs=180.8
Q ss_pred ccEEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----C-C
Q 001189 742 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~-~ 813 (1128)
+.|+++|++++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999996432 259999999999999999999999999999999999999999999999999852 1 3
Q ss_pred hHHhhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001189 814 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrq 887 (1128)
...+|+.|+|+||+| .+|..|+++|+.+.. .....+..+. +.+.++.+ |+. .........|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788899999998 467779999996421 1122222111 12233322 442 2345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988653 7899999999999876 99999999999999999998
Q ss_pred Hhhc
Q 001189 965 LLSN 968 (1128)
Q Consensus 965 l~~~ 968 (1128)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=362.17 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++|++++|++ .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999964 379999999999999999999999999999999999999999999999999988776554 4469
Q ss_pred EEEcCCCccccc-cHhhccccCCC----------CC-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE----------HS-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~-----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
+|+||++.+|.. |+++|+.+... .. +....+. ...+.++++.+ |++........+|||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYGQ 158 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHHH
Confidence 999999999976 99999975211 00 0000000 11223344443 56666677778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++||||++.+|++|||||||++||+.+.+.+.+.|.+..+ ++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999977 999999999999999999
Q ss_pred hHHhh
Q 001189 963 EELLS 967 (1128)
Q Consensus 963 ~~l~~ 967 (1128)
+++..
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 98864
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=355.67 Aligned_cols=197 Identities=33% Similarity=0.485 Sum_probs=165.2
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999964 36999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCCcc---ccccHhhccccCCCC-----------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 825 PQSPVL---FSGTVRFNLDPFSEH-----------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 825 ~Q~~~l---f~~Tv~~nl~~~~~~-----------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
||++.+ +..|+++|+.+.... .++++.++++..++.+. ......+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-----------ADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHH
Confidence 999976 557999998642210 12234445555554433 33344689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++++.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999865 57899999999999977 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=356.26 Aligned_cols=206 Identities=22% Similarity=0.321 Sum_probs=173.7
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996432 25999999999999999999999999999999999999999999999999998776643 2
Q ss_pred -hhceEEEcCCCccccc-cHhhccccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 -r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
++.++|+||++.+|.. |+.+|+.+. .... .+++.++++..++.+.+. .....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3579999999998875 999998642 1111 233455555555544433 3345799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998864 2 7899999999999878999999999999764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=346.00 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=190.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
+++++++++|+.- .|++||||++++||++||+|||||||||++|+|.|+|+|++|+|.++|.||..+++++. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6799999999753 69999999999999999999999999999999999999999999999999999999886 45699
Q ss_pred EEcCCCccccc-cHhhccccCCC------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~------------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
--+|.+-+|++ ||.||+..... ....+-.++.++ +.++++. .||+...++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853211 000111222222 3344444 4777778888889999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
.|||||..+|++|+||||.+||.+.....+.+.|++..+ +.||++|-|||+.+.+ ||||+||+.|+++++|+|+|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999875 4899999999999998 9999999999999999999998
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.84 Aligned_cols=219 Identities=26% Similarity=0.418 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
+.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999964 3699999999999999999999999999999999999884 89999999999865 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. . .. ++.+.++++.+++.+.+ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 1 11 12244444444443222 1334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++++.. ||||++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
....
T Consensus 255 ~~~~ 258 (272)
T PRK14236 255 FTSP 258 (272)
T ss_pred hcCC
Confidence 7543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=352.16 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .|+.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999642 2 39999999999999999999999999999999999999999999999977654 4578999
Q ss_pred EcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+... ..++++.++++..++.+...+. ..+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999999875 99999974321 1133456666666665544433 357999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||||++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999865 37899999999999977 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.19 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC-CCChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 816 (1128)
.++++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999964 3699999999999999999999999999999999999986 5999999999985 345667
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. .+ +++.++++.+++.+. +.........+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-------VKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-------hhHHhhcCcccCCHHHHHH
Confidence 788999999999999899999997421 11 11 223334444443322 2234455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999998865
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
+
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=352.71 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=185.3
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 820 (1128)
.+.|+.++|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 577999999755 479999999999999999999999999999999999999999999999998876542 235678
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++|+||++.+|+.|+++|+.......+++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654445566678888888888888899999998888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH--HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~--~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
+|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 455443 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=377.19 Aligned_cols=205 Identities=25% Similarity=0.352 Sum_probs=172.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----ecCCCChHHh---h-hceEEEcCCCcc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDL---R-KILGIIPQSPVL 830 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~---r-~~i~~v~Q~~~l 830 (1128)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|. ++...+...+ | ++|+|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 6666665544 3 579999999999
Q ss_pred cc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 831 FS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 831 f~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
|. .|+++|+.+.. .... +.+.++++.+++.++. .....+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 59999997431 1122 2344555555554433 3344579999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
||||||++||+.+++.+++.|.++.+ ++|+|+|||+++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999988753 7899999999999876 999999999999999999999876544343
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=361.57 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 5999999999964 3699999999999999999999999999999999999985 48999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC----CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ... ++.+.++++.+++.+.+. .........|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 6788999999999999899999996421 111 123445555555543322 2234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-----CCEEEEecC
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 961 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~-----~G~i~~~g~ 961 (1128)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999987777999999999999987 99999998 599999999
Q ss_pred hhHHhhcC
Q 001189 962 PEELLSNE 969 (1128)
Q Consensus 962 ~~~l~~~~ 969 (1128)
++++.+.+
T Consensus 238 ~~~~~~~~ 245 (259)
T PRK14260 238 TTQIFSNP 245 (259)
T ss_pred HHHHhcCC
Confidence 99997654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.54 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~~ 816 (1128)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +...
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 789999999964 369999999999999999999999999999999999875 4899999999998653 3556
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. +. +.+.++++.+++.+.+.. ..+....+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 788999999999999899999997421 11 11 234555666665544322 2345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999888 99999999999999999999976
Q ss_pred cCCC
Q 001189 968 NEGS 971 (1128)
Q Consensus 968 ~~~~ 971 (1128)
.+..
T Consensus 235 ~~~~ 238 (250)
T PRK14266 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 5443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.33 Aligned_cols=219 Identities=25% Similarity=0.430 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 814 (1128)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999964 369999999999999999999999999999999999997 689999999999864 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. .++++.++++..++...+ .........+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHHH
Confidence 56788999999999998889999996421 11 123344455554442211 123455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEE-EEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~-vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999887 99976 56999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
++.
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=354.10 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+.. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 239999999999999999999999999999999999999999999999876544 3568999
Q ss_pred EcCCCccccc-cHhhccccCC-C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS-E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~-~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+.. . ..++++.++++..++.+.+.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999997421 1 11334566666666655544433 57999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998653 7899999999999877 999999999999999999998754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=366.10 Aligned_cols=213 Identities=26% Similarity=0.435 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 821 (1128)
|+++||+++|+.. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 369999999999999999999999999999999999999999999999999852 2334578899
Q ss_pred EEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||++ .+|..|+++|+.+.. .... +++.++++..++. ........+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHHHHHHHHH
Confidence 9999998 467789999996421 1122 2334444444443 333344568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999886 999999999999999999998753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=357.70 Aligned_cols=162 Identities=25% Similarity=0.393 Sum_probs=129.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc-cccccHhhccccCCC-
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFSGTVRFNLDPFSE- 844 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~Tv~~nl~~~~~- 844 (1128)
+|..||++|++||||-||||++++|+|.++|++|. ..+ -+++|=||--. -|++||++-|.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 35567899999999999999999999999999998 111 26889898753 478899876532110
Q ss_pred -CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHH
Q 001189 845 -HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923 (1128)
Q Consensus 845 -~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l 923 (1128)
..+... ...+. .|..++..+...-.+|||||.||++||-||.+++++++||||++.||.+.+-.+-++|
T Consensus 429 ~~~~s~~---------~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 429 AFGSSYF---------KTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred hcccchh---------HHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 111111 11111 2566677777777889999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEeecCchhhhh-cCEEEEEe
Q 001189 924 REEF--KSCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 924 ~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
++.. .++|.++|-||+..+.- +||++|++
T Consensus 499 RR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 499 RRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9865 46899999999999987 99999986
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=354.51 Aligned_cols=203 Identities=28% Similarity=0.399 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 820 (1128)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 46999999999999999999999999999999999999999999999999998766543 6788
Q ss_pred eEEEcCCCccc-cccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf-~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.++ ..|+++|+.+.. ..+++ ++.++++..++.+ .......+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHHHHHHHHH
Confidence 99999999875 569999997521 12222 2334444444433 33344468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++++.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 46899999999999987 99999999999864
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=361.60 Aligned_cols=222 Identities=22% Similarity=0.359 Sum_probs=187.1
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC---
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--- 810 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~--- 810 (1128)
|..+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 34567999999999964 3699999999999999999999999999999999999985 7999999998774
Q ss_pred -CCChHHhhhceEEEcCCCccccccHhhccccCC---CC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 811 -KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 811 -~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
......+|+.++|+||++.+|.+|+++|+.+.. .. .++++.++++.+++.+ ++....+....+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccC
Confidence 233456788899999999999889999996421 11 1234455555554432 2234455666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987767899999999999976 9999999999999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++....
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999987543
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=357.48 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+.. ... ++++.++++..++.++ ......+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGY-----------ANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986421 111 2234444444444443 4444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+++|++|||||||++||+.+.+.+++.|++..+ ++|||++||+++++.. ||||++|++|++++.|+++++.+..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998653 7999999999999877 9999999999999999999887543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=353.44 Aligned_cols=204 Identities=25% Similarity=0.461 Sum_probs=170.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999988753 46778999
Q ss_pred EcCCCccccc-cHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |++........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 9999986431 11111111 1123334332 4444455556789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999998864 47899999999999877 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=355.75 Aligned_cols=210 Identities=26% Similarity=0.445 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+... .+ ++++.++++..++. ........+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-----------GLGDRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 99999964321 11 12233344443333 333444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998654 6899999999999877 999999999999999999999754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.69 Aligned_cols=218 Identities=26% Similarity=0.448 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999643 699999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
.+|+.++|+||++.+|.. |+++|+.+.. .... +.+.++++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 678899999999998874 9999986321 1111 223344444444221 12334555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe------CCEEEEe
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 959 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~------~G~i~~~ 959 (1128)
||++||||++.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++++.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999876 99999997 8999999
Q ss_pred cChhHHhhcC
Q 001189 960 DTPEELLSNE 969 (1128)
Q Consensus 960 g~~~~l~~~~ 969 (1128)
|++++++...
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=353.30 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=169.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 821 (1128)
|+++||+++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 369999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred EEEcCCCcccc-ccHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++.+|. .|+++|+.+.. ....++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999996531 112211111 112233332 4444455555789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
++|++|||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999875 47899999999999977 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=364.52 Aligned_cols=220 Identities=25% Similarity=0.353 Sum_probs=182.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 814 (1128)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+.+ |++|+|.++|.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999964 369999999999999999999999999999999999865 4999999999998643 23
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++..++.+. +..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-------VSDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-------hhhHhhCChhhCCHHHH
Confidence 35688899999999999889999997421 11 1 1223344444443211 12233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++..++|||++||+++++.. ||||++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999877 999999999999999999998
Q ss_pred hhcCC
Q 001189 966 LSNEG 970 (1128)
Q Consensus 966 ~~~~~ 970 (1128)
.+++.
T Consensus 269 ~~~~~ 273 (286)
T PRK14275 269 FTNPK 273 (286)
T ss_pred HhCCC
Confidence 76543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=360.19 Aligned_cols=219 Identities=23% Similarity=0.412 Sum_probs=184.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 35999999999964 3699999999999999999999999999999999999864 69999999999864 234
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+|+.|+|+||++.+|..|+.+|+..... . .++.+.++++.+++.+.+. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 457889999999999998899999965321 1 1233444555555543222 23345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEE
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLE 958 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~---------~G~i~~ 958 (1128)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. |||+++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777999999999999977 99999997 899999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++...+
T Consensus 250 ~g~~~~~~~~~ 260 (274)
T PRK14265 250 FSPTEQMFGSP 260 (274)
T ss_pred eCCHHHHHhCC
Confidence 99999997654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=349.54 Aligned_cols=221 Identities=30% Similarity=0.419 Sum_probs=195.2
Q ss_pred cEEEEEEEEEeCCCC----------------------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 743 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.|+++||++-|+.+. ...++|+||+|+.||++.|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886431 1248999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHhh----hceEEEcCCCccccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccC
Q 001189 801 RILIDGFDIAKFGLMDLR----KILGIIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|+++|.|+..++..+|| +++++|+|...||+. ||.+|..+.-+. ..+...++|+.+||.+|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988873 469999999999977 999999875321 2344677788888888887777
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-c
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~ 945 (1128)
.+||||+|||+.|||||..+|+|||+|||.|+|||--+..+|+-|.++-+ .+||++||||+++..+ -
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 47999999999999999999999999999999999999999999887643 6999999999999877 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||.+|++|+|+..|+|+|++.++...|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999988766554
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=354.08 Aligned_cols=220 Identities=30% Similarity=0.493 Sum_probs=190.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|+++.|+. ..+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 468999999963 2357999999999999999999999999999999999999999875422 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.||+||+.++.. ....++...++..++.+.++.+|.+..+..+..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998643 334555666777788888888988888888888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
+||||||++||+.+.+.+.+.+... .+|+|+|++||+++++..||++++|++|++++.|+++++....+.|..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999998866544 3589999999999999889999999999999999999987776555543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=364.83 Aligned_cols=203 Identities=31% Similarity=0.442 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.|+++|++++|++. .+++++||+|++||+++|+|||||||||||++|+|+.+|++|.+.. ..+.||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999732 2999999999999999999999999999999999999999876532 2346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|+..|| ..||+|||.|+... .++++.++++..++.+.++..|. +|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHHH
Confidence 99999997 67999999998432 24678889999999999998884 7999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+++|+++|||||+|+||++.+..+-..+.+... .|.|+|.||||..++. .+|||.+|++|+|.+.|++.++..++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998888776655433 4889999999987754 58999999999999999999998764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=370.16 Aligned_cols=226 Identities=25% Similarity=0.408 Sum_probs=184.7
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~ 817 (1128)
.++++|+++.|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999998887765
Q ss_pred h----hceEEEcCCC--cccc-ccHhhccc----cCCCCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001189 818 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 882 (1128)
Q Consensus 818 r----~~i~~v~Q~~--~lf~-~Tv~~nl~----~~~~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LS 882 (1128)
| +.|+||||+| .++. .|+.+|+. .+...+.. .+.+.++.+++ +.+. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 37777663 22222222 23333343333 2111 23455667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+||||++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCCchHHH
Q 001189 960 DTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~~ 976 (1128)
|+++++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766556543
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=371.33 Aligned_cols=225 Identities=21% Similarity=0.362 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~ 816 (1128)
.|+++|++++|+. +...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22369999999999999999999999999999999999986 58999999999998887765
Q ss_pred hh----hceEEEcCCCc--ccc-ccHhhcccc----C--CC----C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 817 LR----KILGIIPQSPV--LFS-GTVRFNLDP----F--SE----H---SDADLWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~--lf~-~Tv~~nl~~----~--~~----~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
++ +.|+||||+|. ++. .||.+|+.. + .. . ..+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 47999999996 333 388888742 0 00 0 012344555555553210 12234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
....||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4468999999999999999999999999999999999999999999998754 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCCchHH
Q 001189 954 GRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 954 G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
|+|++.|+++++.+++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999998765544543
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=359.56 Aligned_cols=218 Identities=28% Similarity=0.423 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCC-hHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 816 (1128)
.|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4899999999964 3799999999999999999999999999999999999986 6999999999987653 346
Q ss_pred hhhceEEEcCCCccccccHhhccccCC----CCCHHHHH----HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~~~i~----~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. ..++.+.. +.++..++.+ .+++.......+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHHH
Confidence 788999999999999899999997421 12333322 2233333221 12234456677899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++++.. |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999877 99999999999999999999976
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
.+
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 54
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=357.07 Aligned_cols=219 Identities=24% Similarity=0.400 Sum_probs=181.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 817 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+...+
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999998 777665443
Q ss_pred ----hhceEEEcCCCc--ccc-ccHhhcccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 818 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 818 ----r~~i~~v~Q~~~--lf~-~Tv~~nl~~----~~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
++.++|+||++. ++. .|+.+|+.. +......++. ..+.++++.+ |++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 557999999984 333 478888742 1111111111 1234555554 343 45667778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001189 963 EELLSNEG 970 (1128)
Q Consensus 963 ~~l~~~~~ 970 (1128)
+++..++.
T Consensus 237 ~~~~~~~~ 244 (258)
T PRK11701 237 DQVLDDPQ 244 (258)
T ss_pred HHHhcCCC
Confidence 99876543
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=360.65 Aligned_cols=216 Identities=24% Similarity=0.367 Sum_probs=179.2
Q ss_pred cEEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 815 (1128)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999521 23699999999999999999999999999999999999999999999999998765555
Q ss_pred HhhhceEEEcCCCc--cccc-cHhhccccC----CCCC----HHHHHHHHHHhcHH-HHHHHccCCcchhhhcCCCCCCh
Q 001189 816 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHS----DADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~--lf~~-Tv~~nl~~~----~~~~----~~~i~~~l~~~~l~-~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
..++.++|+||++. ++.. |+.+|+... .... ++++.++++.+++. +. ......+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH-----------ASYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH-----------HhcCchhcCH
Confidence 55678999999985 4443 888887531 1111 23345555555552 22 2223457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 884 Gqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998653 7899999999999987 9999999999999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++...+
T Consensus 233 ~~~~~~~~~ 241 (267)
T PRK15112 233 STADVLASP 241 (267)
T ss_pred CHHHHhcCC
Confidence 999998654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=353.09 Aligned_cols=208 Identities=24% Similarity=0.339 Sum_probs=177.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998888877888999
Q ss_pred EEcCCCccccccHhhccccCC----CC-CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 823 IIPQSPVLFSGTVRFNLDPFS----EH-SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~----~~-~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|+||++.+|..|+++|+.+.. .. .++++.+ .++.+ |+. +.......+||||||||++|||||+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999999889999996421 11 1122233 33332 342 3445666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEe-CCEEEEecChh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 963 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~-~G~i~~~g~~~ 963 (1128)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+..||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999865 3789999999999998899999995 66667777764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=358.11 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.+.+++++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3899999999964 3699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
.+|+.++|+||++.+|..|+.+|+.+... ...+++.++++.+++.+.+. ...++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999975321 11234566666666543332 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe--------CCEEEEec
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 960 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~--------~G~i~~~g 960 (1128)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998777899999999999877 99999996 89999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999988654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=356.12 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|++++|+. +++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3889999999964 36999999999999999999999999999999999999874 8999999999864 3345
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC---CC-CHHHHHH----HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWE----ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~-~~~~i~~----~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
.+|+.++|+||++.+|.. |+.+|+.... .. .+++..+ .++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 678889999999998875 9999996321 11 2222222 2222322211 12223344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999987 999999999999999999999
Q ss_pred hhcCC
Q 001189 966 LSNEG 970 (1128)
Q Consensus 966 ~~~~~ 970 (1128)
+.++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14272 235 FTNPR 239 (252)
T ss_pred HhCcC
Confidence 86543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=354.38 Aligned_cols=237 Identities=35% Similarity=0.628 Sum_probs=198.9
Q ss_pred HHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 95 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 95 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.+.|..+.+... ..+.+...+.|+++|+++.+ +++|+++||+|++|++++|+|+||||||||+++|+|+++|
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQENN-DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhccccccc-ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45566665443211 11222344569999999852 4699999999999999999999999999999999999999
Q ss_pred CCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 175 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 175 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++|. +.+.+.|+|++|++++++.||+||+.++......++...++.+++.+.++.++.+.++.+++.+..||||||||+
T Consensus 90 ~~G~-I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEGK-IKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCcE-EEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 8765 556778999999999998999999998754444566677788889888999999888889889999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998887655433457899999999999988999999999999999999988764
Q ss_pred chHH
Q 001189 335 GELF 338 (1128)
Q Consensus 335 ~~~~ 338 (1128)
...+
T Consensus 249 ~~~~ 252 (282)
T cd03291 249 RPDF 252 (282)
T ss_pred chHH
Confidence 4333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=357.00 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999964 36999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred eEEEcCCCccccc-cHhhccccCCC----------CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 887 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~-~LSgGqrq 887 (1128)
++|+||++.+|.+ |+++|+..... ....+.. ..+.+.++.+ |++. ....... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0111111 1122333332 3432 2233333 59999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 47899999999999986 79999999999999999886
Q ss_pred Hhh
Q 001189 965 LLS 967 (1128)
Q Consensus 965 l~~ 967 (1128)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=357.58 Aligned_cols=220 Identities=27% Similarity=0.418 Sum_probs=184.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~ 814 (1128)
+.|+++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 35999999999964 36999999999999999999999999999999999999985 8999999999853 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++..++.+++. ...+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 56788899999999999899999996421 11 1 123444555555433222 234556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC-----CEEEE
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLE 958 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~-----G~i~~ 958 (1128)
||++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999853 47999999999999987 999999999 99999
Q ss_pred ecChhHHhhcCC
Q 001189 959 YDTPEELLSNEG 970 (1128)
Q Consensus 959 ~g~~~~l~~~~~ 970 (1128)
.|+++++...+.
T Consensus 237 ~~~~~~~~~~~~ 248 (261)
T PRK14258 237 FGLTKKIFNSPH 248 (261)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=366.56 Aligned_cols=204 Identities=34% Similarity=0.491 Sum_probs=178.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|.+.. .++.||
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 368999999999999999999999999999999999999999875432 245699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC----CC-H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|+|+..|| +.||+|||.||.. .. . +++.++++..+|.+..+..| ..|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999998 7899999999954 12 2 47788888888888776666 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccc-hhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||..+|++||||||+|+||.+.+.++-..+.+.. ..|.|.|+||||.++ +..+|||++|++|+|...|+++++...+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999887776543 349999999999876 5678999999999999999999998764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=349.84 Aligned_cols=203 Identities=29% Similarity=0.524 Sum_probs=179.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-------------eecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-------------VIRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-------------~~~~~ 185 (1128)
.+.++|++|+|+++ .++|+++||++++|+.++|+|+||||||||+++|.|+++|++|.+. .++++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58899999999854 6899999999999999999999999999999999999999987642 14567
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
||||+|+| .+|..||.|.|.||.. .+. +++.++++.+++.+..+..| .+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 6889999999999842 232 45677888999988876666 4899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|.+|+.+|+++|||||||+||+...+.+++.+.+.... |+|+|++|||++.+.. ||++++|++|+++.+|++.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999876655444 6899999999999876 999999999999999998887655
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=358.18 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=177.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCC-----Ch
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~-----~~ 814 (1128)
.|+++||+++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999964 37999999999999999999999999999999999999986 49999999998653 23
Q ss_pred HHhhhceEEEcCCCccccc-cHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 815 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
..+|+.++|+||++.+|.. |+++|+.+... .. ..++.++++..+ ++.......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG-----------MVHFAHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcC-----------CHHHHhCCc
Confidence 4567889999999988874 99999964211 00 122333444433 433344555
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999875 37899999999999776 99999999999
Q ss_pred EEEecChhHH
Q 001189 956 VLEYDTPEEL 965 (1128)
Q Consensus 956 i~~~g~~~~l 965 (1128)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999986
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=357.90 Aligned_cols=211 Identities=26% Similarity=0.388 Sum_probs=181.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--------CceEEECCEecCCCChH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~--------~G~I~i~g~~i~~~~~~ 815 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999887777
Q ss_pred HhhhceEEEcCCCc-cccccHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001189 816 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~-lf~~Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
.+++.++|+||++. +|..|+++|+.+... .. ++.+.++++.. |+++..+....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 78888999999986 567899999964311 01 11233333333 555556666678999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEE
Q 001189 884 GQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 884 Gqrqrl~lArall---------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999976 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 001189 952 DSGRVLEYDTPEELLS 967 (1128)
Q Consensus 952 ~~G~i~~~g~~~~l~~ 967 (1128)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999988864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=340.84 Aligned_cols=193 Identities=29% Similarity=0.446 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 120 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
++++|+++.|..+.. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999999974322 46999999999999999999999999999999999999998775322 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcC----CCCC---HHHHHHHHHHhCcHHHHh-cCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~---~~~~~~~~~~~~l~~~~~-~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..||||+|+..|. +.||+|||.+. .... .++....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 34699999999885 78999999853 2111 334555566667765554 444 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
|||||||+.+|++++.||||++||.++.+.+++.+..... .|+|+|+||||+.....|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999987655543 489999999999999999999999999854
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=371.91 Aligned_cols=211 Identities=23% Similarity=0.395 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhh
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 819 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 819 (1128)
|++ |++++|+.. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999642 23 89999999999999999999999999999999999999999999998653 2334678
Q ss_pred ceEEEcCCCccccc-cHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+++|+||++.+|.. |+++|+.+.. ...++++.++++..++.+.. .....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLL-----------DRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999965 9999997532 22334555666665554443 34446899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
+|++|||||||++||+.+++.+.+.|++..+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998653 6899999999999887 99999999999999999999987654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=351.83 Aligned_cols=209 Identities=27% Similarity=0.446 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 38999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. ..+ ++++.++++..++.+++ .....+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-----------NRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-----------hcCcccCCHHHHHHHHHHHHH
Confidence 999999885 59999996321 111 22344455555554443 344468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|++|+|||||++||+.+.+.+++.|++... ++|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999887 999999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=347.21 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|+. .++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 568999999999999999999999999999999999999999999999987643 36778999
Q ss_pred EcCCCccccc-cHhhccccC-CC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPF-SE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~-~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||+|.+|.. |+++|+.+. .. ..+.++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999998875 999998632 11 11234555666666655544433 57999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++++.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 7899999999999876 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=355.34 Aligned_cols=219 Identities=26% Similarity=0.448 Sum_probs=182.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EecCCCChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g------~~i~~~~~~~ 816 (1128)
.|.++|++++|+. +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4999999999964 3699999999999999999999999999999999999999997666665 6666666677
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCC---CC-CHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~-~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|+||+|.+|.+ |+++|+.+.. .. .+++ +.++++..++.+.+ ..........||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999999876 9999997421 11 1222 23333433332211 12334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.++..+.+.|++..+++|||+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999966 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+.+.
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=362.20 Aligned_cols=219 Identities=27% Similarity=0.461 Sum_probs=184.2
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--C
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--G 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~ 813 (1128)
+..|+++|++++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999964 369999999999999999999999999999999999986 6899999999998653 3
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCCC---------------C-----CHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE---------------H-----SDADLWEALERAHLKDAIRRNSLGLDAQ 873 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---------------~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~ 873 (1128)
...+|+.++|+||++.+|..|+++|+.+... . .++.+.++++.+++. .++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHH
Confidence 4567889999999999998999999974210 0 012233344443332 233445
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEE-EEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLL 951 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i-~vl 951 (1128)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56667889999999999999999999999999999999999999999999998777899999999999877 9997 567
Q ss_pred eCCEEEEecChhHHhhc
Q 001189 952 DSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 952 ~~G~i~~~g~~~~l~~~ 968 (1128)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=320.75 Aligned_cols=200 Identities=27% Similarity=0.465 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
+.++++.|+|... ==..+++|++||++||+||||||||||+++|+|+..|.+|.+.. ..+.|+++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678899999632 23678999999999999999999999999999999999876543 23469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC-------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA-------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|+..|| ..||.+||-+|.. .+.++++.++...++....+++|. +||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999999 6899999999943 235678888999999999999995 79999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++.+|++||||||+|||.-+......+... ..++.|++||||.++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999988877644433 2468999999999998775 7999999999999999988877553
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=354.72 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++||+++|+. +++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 469999999999999999999999999999999999975 5 599999999998642 344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+++.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.. ++.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 1 122333444443321 2223445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
..+.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=355.10 Aligned_cols=202 Identities=23% Similarity=0.340 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999988642 246899
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. .... +++.+.++..+ ++........+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVG-----------LEGAEKRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 1121 22334444444 33334445568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 963 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~--~G~i~~~g~~~ 963 (1128)
+.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999863 37999999999999877 99999998 59999987754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=347.07 Aligned_cols=203 Identities=31% Similarity=0.460 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.|.++|+++.|+. .++++||||+|+.||.+|+.|||||||||||++|+|+..|+.|.+.. ..++
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788999999974 57999999999999999999999999999999999999999876432 1236
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
||||+|+..|| ..||.+||.||... ...++.+.++.|+|...-+..| ..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999997 79999999999521 1345667788888887777766 489999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||..+|++||||||+++||++.++.+-..+.+...+ |.|+|+||||.++. +.||||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999988887665544333 89999999999885 5689999999999999999999876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 64
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=346.75 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=174.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.+.. ...+.++.++++..++.+.. .....+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986421 22345566666665555433 3334579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999865 47899999999999876 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=332.03 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=160.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996532369999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+|..|+.+|+ ||||||||++||||++.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988998886 99999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
|||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=351.56 Aligned_cols=215 Identities=26% Similarity=0.396 Sum_probs=177.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hceEEEcCCCc-ccc--ccHhhcccc----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~-lf~--~Tv~~nl~~----~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++.+++.+. ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 1223445555555444321 12455666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999976
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
...
T Consensus 231 ~~~ 233 (254)
T PRK10418 231 APK 233 (254)
T ss_pred CCC
Confidence 543
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=369.22 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=176.3
Q ss_pred EEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHhhhceEE
Q 001189 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 823 (1128)
Q Consensus 748 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 823 (1128)
|++++|+.. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred EcCCCccccc-cHhhccccCCC-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|.. |+++|+.+... .. ++++.+.++.. |++........+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 99999975321 11 11233344443 44444555557899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 9999999999999999999999999998653 7899999999999877 999999999999999999999876543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=349.22 Aligned_cols=223 Identities=23% Similarity=0.367 Sum_probs=193.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 357999999999999999999999999999999999999999875432 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|++|+|++|+.|++||+........+++..+++..++.+.++.+|.++++.+++.+.+||||||||++|||||+.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997654444556777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc-hHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLM 342 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 342 (1128)
++||||||++||+.+.+.+++.+.. ..++.|+|++||+++.+..||+|++|++|++++.|+++++.... +.++.++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 9999999999999999988875543 34589999999999999889999999999999999999887653 3454443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=346.18 Aligned_cols=218 Identities=32% Similarity=0.569 Sum_probs=188.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 257999999999999999999999999999999999999999875432 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.|++||+.++.. .........++.+++.+.+..+|.+.++.+..+..+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743 344556667778889888899999999989888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 340 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 340 (1128)
+||||||++||+.+.+.+.+.+..... |+|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999886654433 8999999999999988999999999999999998887765544443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=339.53 Aligned_cols=201 Identities=55% Similarity=0.978 Sum_probs=179.4
Q ss_pred EEEEeEEEEeCCCCC--CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc
Q 001189 120 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 197 (1128)
++++|+++.|+...+ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+ .+.++|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecCchhcc
Confidence 468999999974321 379999999999999999999999999999999999999998754 56778999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD 277 (1128)
.|++||+.++..++.++..++.+.+++.+.++.+|.|+++.++....+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999986666666777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 278 AHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 278 ~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+.+.+++++.++.. ..+|+|+|++||+++.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999998865543 334799999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=320.89 Aligned_cols=195 Identities=25% Similarity=0.452 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
.|+|+||++.|+.+ +++|+||||+|++||++.|+||||||||||+|+|.++..|+.|.+.. +|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 37899999999853 68999999999999999999999999999999999999999886432 56
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++||+|+||.-|. +.||.||+.|.-. .. .+++.+++++.+|.+....+|. .|||||+||++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 7899999999875 7899999998632 11 3567788999999999999994 79999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcC-CEEEEEeCCeEeeec
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 326 (1128)
||||++.+|++||-||||.+|||..+..|++.+......|.||++.||+.+.+..+ -|++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999986555567799999999999999876 899999999998643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=346.49 Aligned_cols=215 Identities=32% Similarity=0.535 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|+++.|+...++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997433457999999999999999999999999999999999999999875421 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++.+++.||+||+.++.. ...++....++.+++.+.+..+|.+.++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 234555666777788888888998888888888899999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+||||||++||+.+.+.+++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999998665444 789999999999999889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=345.84 Aligned_cols=215 Identities=33% Similarity=0.540 Sum_probs=187.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+.. ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 247999999999999999999999999999999999999999875422 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.||+||+.++.. ....++.+.++.+++.+.++.+|.+..+..+....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743 344566677778888899999988888888888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999998865443 45899999999999998899999999999999999888765543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=345.97 Aligned_cols=202 Identities=26% Similarity=0.388 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r 818 (1128)
++++|+++.|++. .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999776643 357
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC----CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+.++|+||++.+|. .|+.+|+.+.. ....+ ++.++++..+ ++........+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG-----------LGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHH
Confidence 88999999999887 59999997432 11222 2333444444 44444445568999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
+||||++++|++|||||||++||+++...+.+.|++..+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999997656999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=391.30 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.5
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001189 869 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 943 (1128)
Q Consensus 869 Gldt-~v~e~g~~LSgGqrqrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~ 943 (1128)
|++. ..+....+||||||||+.|||+|+++| +++||||||++||+.+.+.+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 357777899999999999999999999 9999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCC
Q 001189 944 DCDRILLL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 944 ~~D~i~vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 6999999999999987654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=342.49 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+.. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 37899999999742 357999999999999999999999999999999999999999875421 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|++|++.+++.|++||+.+......++..++++..++.+.+..+|.|+.+..+..+.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
+||||||++||+.+++.+++.+... .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999998865443 35689999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=343.99 Aligned_cols=212 Identities=29% Similarity=0.511 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 246999999999999999999999999999999999999998875422 23459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++|+++++..|++||+.++.. ....++..+++.+++.+.++.+|.+..+.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998743 34456677788889999999999888888888899999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999998865543 45899999999999998899999999999999988877653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=351.42 Aligned_cols=218 Identities=24% Similarity=0.380 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-
Q 001189 744 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~- 815 (1128)
|+++||+++|+.. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999631 24799999999999999999999999999999999999999999999999999876653
Q ss_pred --HhhhceEEEcCCCc--cc-cccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001189 816 --DLRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 885 (1128)
Q Consensus 816 --~~r~~i~~v~Q~~~--lf-~~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq 885 (1128)
.+|+.++|+||++. ++ ..|+++|+.+. ...... .....+.+.++.+ |+++ ..+.....|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999983 44 35899987431 011111 1112334455543 5653 4566778899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998653 7899999999999987 999999999999999999
Q ss_pred hHHhhc
Q 001189 963 EELLSN 968 (1128)
Q Consensus 963 ~~l~~~ 968 (1128)
+++...
T Consensus 237 ~~~~~~ 242 (268)
T PRK10419 237 GDKLTF 242 (268)
T ss_pred hhccCC
Confidence 998753
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=331.97 Aligned_cols=172 Identities=32% Similarity=0.515 Sum_probs=158.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 821 (1128)
|+++|++++|+. +++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred EEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||+|.+|.. |+++|+... ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998642 99999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998654 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=348.65 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 817 (1128)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 368999999999999999999999999999999999999999999999987 766665432
Q ss_pred ----hhceEEEcCCCc--cc-cccHhhcccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 818 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 818 ----r~~i~~v~Q~~~--lf-~~Tv~~nl~~----~~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
++.++|+||++. ++ ..|+.+|+.. +......+. ...+.++++.+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999984 22 3477777632 111111111 12344556664 443 45666778899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 37899999999999986 999999999999999999
Q ss_pred hHHhhcC
Q 001189 963 EELLSNE 969 (1128)
Q Consensus 963 ~~l~~~~ 969 (1128)
+++..+.
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 9987654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=363.09 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
|+++|++++|+.++ ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999875421 24
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
+.|||++|++.++ ..||+|||.++.. .+. ++..++++..++.+..+..| .+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 5799999999998 5899999987531 222 33455666677665544433 589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++||||||||+||+.+.+.+++.+.+... .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999986655433 38999999999999865 89999999999999999999876
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
+
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=329.90 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|+.. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999643 6999999999999999999999999999999999999999999999999987655 567889999
Q ss_pred EcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|.+ |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988876 9998863 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+++++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 46899999999999886 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=347.32 Aligned_cols=200 Identities=29% Similarity=0.446 Sum_probs=173.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. +++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCCcccc---ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf~---~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.++. .|+++|+.......++++.++++..++.+.+.+ ....||||||||++||||++.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 378888754333445667777777777655443 33579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||||++||+.+...+++.|++..+ ++|||+|||+++++.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988653 7899999999999876 999999965 7999999999864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=341.52 Aligned_cols=201 Identities=24% Similarity=0.389 Sum_probs=166.5
Q ss_pred EEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhhceEE
Q 001189 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKILGI 823 (1128)
Q Consensus 748 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~ 823 (1128)
||+++|+.. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++... +....|+.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999753 34 99999999 99999999999999999999999999999999999988643 23346788999
Q ss_pred EcCCCcccc-ccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||++.+|. .|+++|+.+... ..+.. ....+.++++.+ |++........+||||||||++||||++.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 499999964321 11111 111233344443 555555666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998653 7899999999999976 9999999999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=344.77 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+||+++|+.. .+++++|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999654 2579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCC-CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~-~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+.++|+||++.+|.+ |+++|+.+.... ......+........+ .++. .+++.........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 999999742110 0000000011111111 2222 2444444555678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCc-hhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l-~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+++|++|||||||++||+.+...+.+.|++.. .++|+|++||++ +++.. ||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 46665 9999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=329.54 Aligned_cols=201 Identities=26% Similarity=0.443 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
.|+++|++..||+ ++.+|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.+.. +|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 468999999999999999999999999999999999999999875432 45
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC------------CCHHHH---HHHHHHhCcHHHHhcCCCCCcccccCCCCCCC
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA------------FEPARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~~~~~---~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LS 247 (1128)
.+|||++|++.|. ..||.+|++.|+- ++.++. .++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 6799999999986 7899999998742 223332 33455555544332 3456899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeee
Q 001189 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEE 325 (1128)
Q Consensus 248 GGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~ 325 (1128)
|||+|||+|||||+++|+|+|-|||+|+|||.+.+++++.+.+.. ..|.|+|+.-|++++.. +||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999776543 46899999999999976 5899999999999999
Q ss_pred cChhHHh
Q 001189 326 GTFEDLS 332 (1128)
Q Consensus 326 g~~~~l~ 332 (1128)
|+.+++.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=344.02 Aligned_cols=224 Identities=25% Similarity=0.457 Sum_probs=185.6
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-C----CCceEEECCEecCCCChHH
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p----~~G~I~i~g~~i~~~~~~~ 816 (1128)
++++|++..|... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6889999999643 2369999999999999999999999999999999999997 4 5799999999999999875
Q ss_pred hh----hceEEEcCCCc-cccc--cHhhcc----ccCCCC-C----HHHHHHHHHHhcHHH---HHHHccCCcchhhhcC
Q 001189 817 LR----KILGIIPQSPV-LFSG--TVRFNL----DPFSEH-S----DADLWEALERAHLKD---AIRRNSLGLDAQVSEA 877 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~-lf~~--Tv~~nl----~~~~~~-~----~~~i~~~l~~~~l~~---~i~~lp~Gldt~v~e~ 877 (1128)
+| +.|++|||||. -++- ||.+.+ ...... + .++..+.|+.+++.+ .+...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 36999999994 2332 555433 211111 1 234666677776643 334444
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCC
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 954 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G 954 (1128)
.+||||||||+.||-||+.+|++||.||||++||..+.+.|.+.|+++.+ +.|+|+||||+..+.. ||||+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 58999999999999999999999999999999999999999999998764 7999999999999988 9999999999
Q ss_pred EEEEecChhHHhhcCCCchHHHHH
Q 001189 955 RVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|.|+.+++..++...|.+..-
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHH
Confidence 999999999999988777765543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=320.03 Aligned_cols=212 Identities=27% Similarity=0.445 Sum_probs=185.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+.+|++++-..+ .+|+++||+++|||++||+||||||||||++.|.|.+.|++|++.++|+++..+++.++-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999887543 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-ccccHhhccccC----C---CCCHHH--HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 824 IPQSPVL-FSGTVRFNLDPF----S---EHSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~----~---~~~~~~--i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+||+..+ |.-||+|-+.++ . +..+++ ..+++.++++..+-.+. -..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999875 788999877543 1 111333 56778887776654432 2479999999999999
Q ss_pred Hhcc------CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 894 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 894 all~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
.|.+ ++++|+||||||+||......+.+..+++. .++.|+.|-||++.... ||||++|.+||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 346999999999999999999999999876 47899999999999887 999999999999999999999
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=350.87 Aligned_cols=209 Identities=28% Similarity=0.417 Sum_probs=171.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 48999999999633 469999999999999999999999999999999999999999999999998742 12234699
Q ss_pred EEcCCCcc---ccccHhhccccC--C------CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 823 IIPQSPVL---FSGTVRFNLDPF--S------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 823 ~v~Q~~~l---f~~Tv~~nl~~~--~------~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|+||++.+ +..++++|+... . .. .++.+.++++..++.+. ......+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-----------RHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHH
Confidence 99999865 345788887531 0 00 12234445555555433 333446799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++++.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999865 47899999999999876 9999777 89999999999875
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=356.19 Aligned_cols=211 Identities=23% Similarity=0.407 Sum_probs=171.4
Q ss_pred CCCcEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------
Q 001189 116 GLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181 (1128)
Q Consensus 116 ~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------ 181 (1128)
+.+.|+++|++|+|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999997421 247999999999999999999999999999999999999998874321
Q ss_pred ----------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCc
Q 001189 182 ----------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDV 236 (1128)
Q Consensus 182 ----------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~ 236 (1128)
++..|+||+|+| ++|+.||+|||.|+.. .+.++ ..+.++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 234599999998 6888999999998732 22222 223333333321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEE
Q 001189 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRII 315 (1128)
Q Consensus 237 t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 315 (1128)
...+..+.+||||||||++|||||+.+|++|||||||++||+.+++++++.+.....+|+|+|+|||+++++. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1245567899999999999999999999999999999999999999999866544446899999999999874 699999
Q ss_pred EEeCCeEeeecChhHHhhcch
Q 001189 316 LVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 316 ~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
+|++|++++.|+++++.....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHH
Confidence 999999999999998876543
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=333.58 Aligned_cols=185 Identities=25% Similarity=0.378 Sum_probs=162.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
++++|++++|++ +++++|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999964 3699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++|+||++.+|.+ |+++|+ .. ...+||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998876 555544 01 11369999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~--~~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 59999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=344.56 Aligned_cols=201 Identities=28% Similarity=0.438 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 57999999999999999999999999999999999999998875321 234
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.+..+ ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 6999999998886 599999987521 222 23344555555543332 233589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999986654433 48999999999998765 89999999999999999888764
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=325.49 Aligned_cols=205 Identities=28% Similarity=0.412 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 119 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
.++++|+++.|+.+. -.++|++|||+|.+||+++|+|+||||||||.++|+|+.+|++|.+.. .++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997431 115999999999999999999999999999999999999999876432 234
Q ss_pred cEEEEecCCCC---CcccHHHHHhcCC-----CCCHHHHHHHHHHhCcHHH-HhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWI---FNATVRDNILFGS-----AFEPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l---~~~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~-~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|-+|+|||.- ...||++-|.-+. +..+.+..++++..+|.+. ++..| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 69999999964 3468888876331 1224557788888888654 55666 479999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||..+|++||||||||+||+.....|++.+.... ..+-|.|+||||+..+.+ ||||++|++|++++.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999998665533 357899999999999986 89999999999999999999887
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 6
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=334.54 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.3
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.++||+|.|+.. .+++|+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999742 4579999999999999999999999999999999999999 89999999999987764 3567
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.++|+||++.+|.. |+++|+.+.... . ..+....||||||||++|||||++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998643100 0 122335799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEee-cCchhhhh-cCEEEEEeCCEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vt-H~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+|++|||||||++||+.+++.+++.|++..+ ++|+|+++ |+++.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766655 55677765 9999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=360.75 Aligned_cols=203 Identities=28% Similarity=0.417 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. ++++|+|+||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 357999999999999999999999999999999999999999875422 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| +.||+|||.|+.. .+ .+++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 5799999998742 12 234566777788876666555 48999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++||||||||+||+.+++.+.+.+.+... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999999887654433 3899999999998765 5899999999999999999998665
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=332.98 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.9
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
.|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999642 247999999999999999999999999999999999999 9999999999998864 35
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
.|+.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988865 9999885310 0 0 06999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCch-hhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~-~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4789999999997 5655 9999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=329.39 Aligned_cols=177 Identities=33% Similarity=0.532 Sum_probs=158.2
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++||+++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3699999999999999999999999999999999999999999999999999888887888889999
Q ss_pred cCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
|| +++.+++.+++. ....+||||||||++||||++++|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98 445555554433 23467999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 905 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998754 7899999999999866 9999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=336.36 Aligned_cols=206 Identities=34% Similarity=0.577 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999632 357999999999999999999999999999999999999998875421 12369
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++|+++++..|++||+.++.. .+..++.+.++..++.+.++..|.+++|.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999987643 34456677888889998899999999999888889999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
++||||||++||+.+.+.+++.+.... +++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999998655433 348999999999988889999999999987653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=329.26 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=155.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 821 (1128)
.|+++|++++| +++++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++ ...|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999988764 3467789
Q ss_pred EEEcCCC---ccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~---~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++ .++ ..|+++|+.+... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864210 99999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++++.. ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999988 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=337.21 Aligned_cols=193 Identities=25% Similarity=0.373 Sum_probs=160.9
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhce
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 821 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~i 821 (1128)
++||++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 369999999999999999999999999999999999999999999999999765442 2356789
Q ss_pred EEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|++|++.+|. .|+++|+.+.. ... ++++.++++..++. ........+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-----------LKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-----------hhhcCChhhCCHHHHHHHHHHH
Confidence 99999999987 59999997521 111 22344444444443 3344445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhhcCEEEEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998653 78999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=357.99 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=171.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999875422 135699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++....+..| ..|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 12 234556666667665444333 5899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+.+|++||||||||+||+.+++++.+.+..... .|.|+|+|||+++++ ..||+|++|++|++++.|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999886654433 389999999999986 45899999999999999999988654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.10 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHhhh-
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r~- 819 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 3699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC----------CCH----HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC-CCC
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE----------HSD----ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFS 882 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~~----~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~-~LS 882 (1128)
.++|+||++.+|.+ |+.+|+..... ... +.+.++++.+ |+. +..+.... .||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV-----------GMDPSFLSRNVNEGFS 153 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHc-----------CCchhhhccccccCCC
Confidence 48999999998876 88888753211 000 1122333333 332 23333333 599
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 001189 960 DTPEEL 965 (1128)
Q Consensus 960 g~~~~l 965 (1128)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 998743
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=348.74 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+....+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997433356999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. ++..||+|||.|+.. .+. ++..++++..++.+..+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 567899999998632 222 34566777778776555443 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|+++..|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999886554433 389999999999998889999999999999999998876553
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=342.36 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=172.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46677774 27999999999999999999999999999999999985 599999999999888887888889999
Q ss_pred cCCCccc-cccHhhccccCCCC--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc----
Q 001189 825 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 897 (1128)
Q Consensus 825 ~Q~~~lf-~~Tv~~nl~~~~~~--~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~---- 897 (1128)
||++.++ ..|+++|+.+.... ...+. ...+.+.++.+ |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998644 56999999754221 11111 01122333332 44444455567899999999999999997
Q ss_pred ---CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998877 99999999999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=376.69 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=181.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh-hce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r-~~i 821 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+....+ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCCccccc-cHhhccccCCCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++.++.. |+++|+.+..... ++++.++++.. |++........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988875 9999997542211 12333344443 33333344456899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 47899999999999977 99999999999999999998764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=330.40 Aligned_cols=181 Identities=25% Similarity=0.399 Sum_probs=159.1
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999641 246999999999999999999999999999999999986 489999999999885 4567
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++++|+||++.+|.. |+++|+.+.. . +. +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~---------~~---------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------L---------LR---------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------H---------Hh---------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986310 0 00 699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-hh-hcCEEEEEeC-CEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-II-DCDRILLLDS-GRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~-~~-~~D~i~vl~~-G~i~~~g 960 (1128)
+|++|||||||++||+.+...+++.|++.. .++|+|+|||+++. +. .||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999865 47899999999984 54 4999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=337.94 Aligned_cols=467 Identities=20% Similarity=0.218 Sum_probs=291.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCh-----hHHHHHHhhchhhhhhhhHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAVF 536 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~-----G~ilnr~s~D~~~id~~l~~~ 536 (1128)
+.+|.+++.+.+++...+.|+-.....+.-.-+-..++++-+.....|+..... -..=.|+..|+...-.....+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 456777777777788888888888888888888888888888777444433221 233368888887765443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Q 001189 537 VNMFMGQVSQLLSTFVLIGIV---------------STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 601 (1128)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 601 (1128)
...++..+..+++..+++.-+ ..++.|+++..++....+...+.+....+.-......+.+...+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 334444443333322222111 11122222222111111111221111111111111122233344
Q ss_pred HHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001189 602 GEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR---WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 678 (1128)
Q Consensus 602 ~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 678 (1128)
...-++...|-.|+.|+...+...+.++.............. |.+.....++.++-++.+. ..+..+... +
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~a-p~~f~g~i~----~- 322 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAA-PRYFSGQIT----F- 322 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhcc-HhhhcCcCh----H-
Confidence 455567777888877665544444443333322222111111 2222222222222111111 111222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCccccCCCCCCCCCCCCccEEEEEEEEE
Q 001189 679 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVLR 752 (1128)
Q Consensus 679 ~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~------~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~ 752 (1128)
+-+......+..+...+++++..+..+.+......|+.++... +++.+.... ......-..+..|+++|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 1112222333445566777777777777888889999887632 222111100 000000001457999999999
Q ss_pred eCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc
Q 001189 753 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832 (1128)
Q Consensus 753 y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 832 (1128)
-+++. ..|++.+|+|+|||.+-|.|+||||||||+++|.|+++--+|+|.+-. -..+-|+||.|.+-.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87654 789999999999999999999999999999999999999999986541 135789999999999
Q ss_pred ccHhhccc-cCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc
Q 001189 833 GTVRFNLD-PFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 833 ~Tv~~nl~-~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs 909 (1128)
||+||-|. |.. ..+|+++.++|.+|+|.++++++. +.+. -..-||+||||||++||.++++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999886 333 278999999999999999999863 2222 345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEe
Q 001189 910 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
+||++++..+.+.+++..+++|||-|+||.....-.++.+-+.
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999977666566655543
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=340.89 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=158.2
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc-CCCccc-cccH
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLF-SGTV 835 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~Tv 835 (1128)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|+| |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999987553 345678899998 566676 4599
Q ss_pred hhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCC
Q 001189 836 RFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912 (1128)
Q Consensus 836 ~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD 912 (1128)
++|+.+.. ....++..+. +.+.++. .|++.........||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99985421 1222222211 1122222 234333444456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 913 VRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 913 ~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+.+.+.+.|+++.+ ++|||+|||+++++.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998653 6899999999999877 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=319.42 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999643 46999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+++.|+++|+.+. ....||||||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 135799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||+|++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999985 68999999999877679999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=390.61 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=148.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHH---------HHhcCCCCCCc--------eEEEC
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 805 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~---------~l~g~~~p~~G--------~I~i~ 805 (1128)
.++++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478888752 3699999999999999999999999999999 55554322111 23455
Q ss_pred CEecCCCCh----H------Hhh---------hceE-----EEcCC------------------C---------------
Q 001189 806 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 828 (1128)
Q Consensus 806 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 828 (1128)
-.++..-+. . ++| +..+ +.++. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 444332111 1 233 1111 12221 0
Q ss_pred -----ccccc-cHhhccccCCC-----C-CHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHh
Q 001189 829 -----VLFSG-TVRFNLDPFSE-----H-SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 829 -----~lf~~-Tv~~nl~~~~~-----~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lAral 895 (1128)
..+.+ ||.|+|++... . ...++.+.+ +.++. .|++.. .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 66666654211 0 011122111 22333 466654 6777789999999999999999
Q ss_pred c---cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEe------CCEEEEecChhHH
Q 001189 896 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l---~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~------~G~i~~~g~~~~l 965 (1128)
+ ++|++|||||||++||+.+.+.+.+.|+++. .+.|||+|+|+++.+..||+|++|. +|++++.|+|+++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 5999999999999999999999999998865 4789999999999996699999996 7999999999999
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 863
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=348.06 Aligned_cols=205 Identities=29% Similarity=0.463 Sum_probs=168.9
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
|+++|++|+|+.+. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 136999999999999999999999999999999999999998875322
Q ss_pred --------------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcH-HHHhcC
Q 001189 182 --------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDLL 231 (1128)
Q Consensus 182 --------------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~l 231 (1128)
++..||||+|+| .+|..||+|||.|+.. .+. ++..++++.++|. +..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 134599999986 5778899999998731 222 3345566666664 2222
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-c
Q 001189 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-Q 310 (1128)
Q Consensus 232 ~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~ 310 (1128)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+......|+|+|+|||+++++. .
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334689999999999999999999999999999999999999998866544445899999999999865 5
Q ss_pred CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 311 VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 311 ~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||+|++|++|++++.|+.+++....
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999998886553
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=346.88 Aligned_cols=205 Identities=25% Similarity=0.441 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
|+++|++|+|+.+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997422 136999999999999999999999999999999999999999875321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..|+||+|+| .+|..||.||+.|+.. .+. +++.++++..++.+.+ ......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 234699999998 6888899999998732 222 2345555556653221 12344689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999998865443345899999999999885 5999999999999999999988
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=304.19 Aligned_cols=196 Identities=27% Similarity=0.409 Sum_probs=169.0
Q ss_pred EeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 752 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
.|.....++|+++||++.+||.++|.||||||||||++.++-+..|++|++++.|.|++.++++.+|++|+||-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 34444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHhhcccc-CC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001189 832 SGTVRFNLDP-FS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906 (1128)
Q Consensus 832 ~~Tv~~nl~~-~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDE 906 (1128)
.+||.+||.+ +. ........+.++++++. ++.+..+..+||||||||++|+|-|.--|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 9999999964 21 12222233333333332 355566678899999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh-hhhcCEEEEEeCCEEE
Q 001189 907 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-IIDCDRILLLDSGRVL 957 (1128)
Q Consensus 907 pTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~-~~~~D~i~vl~~G~i~ 957 (1128)
|||+||+.+.+.|.+.|.+++ ++..++.|||+.+. +..+|+++-+..|++-
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999987 36899999999999 6669999999998763
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=356.17 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=171.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
..++++|++++|+. +.+|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .++.||
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 56999999999999999999999999999999999999999875432 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 22 23455666666665544433 35899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+.+|+++|||||||+||+.+.+++.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999887655433 3899999999999865 58999999999999999999987653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=377.55 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 3899999999964 369999999999999999999999999999999999999999999999999988776543 4579
Q ss_pred EEEcCCCccccc-cHhhccccCCC-------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-------~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+|+||++.+|.. |+++|+.+... . ...+.. ..+.+.++.+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964211 0 111111 1122333332 4433344445689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999998865 47899999999999987 99999999999999999988753
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=347.84 Aligned_cols=206 Identities=28% Similarity=0.459 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 183 (1128)
++++|++|.|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 247999999999999999999999999999999999999999875321 23
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..||||+|+| .+++.||+|||.|+.. .+. +++.++++.+++.. .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 4699999998 5678999999998631 222 23445566666540 0112344578999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+|||||+.+|++|||||||++||+.+.+++++.+..... .|+|+|+|||+++++. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999986554433 3899999999999875 59999999999999999998876
Q ss_pred hc
Q 001189 333 NN 334 (1128)
Q Consensus 333 ~~ 334 (1128)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=316.70 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 822 (1128)
|+++|++++|+.. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999643 699999999999999999999999999999999999999999999999999887654 4577899
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999874 47899999999998877 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=336.65 Aligned_cols=201 Identities=26% Similarity=0.368 Sum_probs=164.3
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHhhhceEEEcCCCc-cc-c-
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 832 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 832 (1128)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred ccHhhccccC----CCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 833 GTVRFNLDPF----SEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 833 ~Tv~~nl~~~----~~~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
.|+.+|+... .... .+++.+.++..++.+ + ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887421 1111 122344444433321 0 13455566789999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 906 EATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|++++.|+++++.....
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 99999999999999999998653 7899999999999976 99999999999999999999986543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=375.73 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=178.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 821 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987655544 35679
Q ss_pred EEEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.++.. |+++|+.+... ....+..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 11111111 122333332 3433334445679999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999987 9999999999999999988764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=376.45 Aligned_cols=215 Identities=22% Similarity=0.365 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-hhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~ 819 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998766554 457
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
.++|+||++.+|.. |+++|+.+... ...++..+ .+.++++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 11111111 123334443 444334445568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998864 47899999999999987 9999999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=358.87 Aligned_cols=227 Identities=27% Similarity=0.464 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~----~G~I~i~g~~i~~~~~~~ 816 (1128)
-++++|+++.|.... ..+++||||+|.+||++||||.|||||||+.++|.|+.++. +|+|.++|.|+..++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 589999999996433 25999999999999999999999999999999999999987 899999999999888766
Q ss_pred hh----hceEEEcCCCc-cccc--cHhhccc----cCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 817 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~-lf~~--Tv~~nl~----~~~~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
.| +.|+||||+|. .++. ||.+.+. ..... ..++..+.|+.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 45999999995 4543 6655442 11111 23445566666666443322 2234689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||||+.||+||+.+|++||+||||++||+.+.+.|.+.|+++. .+.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 47899999999999998 99999999999999
Q ss_pred ecChhHHhhcCCCchHHHHH
Q 001189 959 YDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~ 978 (1128)
.|+++++++++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999988877776553
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=328.44 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=166.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|+.++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999986543 467889999
Q ss_pred EcCCCccc-cccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLF-SGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||++.++ ..|+++|+.++.. ..++++.++++..++.+... ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 4699999976432 24556667777776654332 23357999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999887766 9999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=355.66 Aligned_cols=204 Identities=29% Similarity=0.419 Sum_probs=173.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|+
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999998875421 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .++..++++..++.+.++..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5699999998742 12 234566677777776666555 4899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+.+|++||||||||+||+.+++.+.+.+..... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999886654433 4899999999999864 69999999999999999999887653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=338.94 Aligned_cols=218 Identities=19% Similarity=0.285 Sum_probs=167.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHhh-hc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 820 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999994 69999999999999887766554 56
Q ss_pred eEEEcCCCccccc-cHhhccccC-CCCCHHHHHHHHHHh----cHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPF-SEHSDADLWEALERA----HLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~-~~~~~~~i~~~l~~~----~l~~~i~~lp~Gld-t~v~e~g-~~LSgGqrqrl~lA 892 (1128)
++|+||++.++.. |..+++... .........+.++.. .+.+.++.+ ++. ....... ..||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999987654 544443210 000000000000111 112222221 221 1111222 36999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhHH
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988654 6899999999999987 899999999999999998754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=334.96 Aligned_cols=191 Identities=25% Similarity=0.440 Sum_probs=158.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+.. .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999998875321 234
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++. .||+||+.++.. .. .+++.++++..++.+..+..+ .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 6999999998874 699999987521 11 234566677777765544333 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998665443458999999999999874 899999999974
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=336.48 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=160.0
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc-ccHhhcc
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 839 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl 839 (1128)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999887 5999998
Q ss_pred ccC-----CCCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccC
Q 001189 840 DPF-----SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910 (1128)
Q Consensus 840 ~~~-----~~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~ 910 (1128)
.+. ....+. .+.+.++.. |++.........||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALV-----------GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHc-----------CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 112222 233334443 344444445568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 911 VDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 911 lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999999877 9999999999999999877664
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=343.59 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999963 246999999999999999999999999999999999999999875421 13469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+| .++..||+||+.|+.. .+ .+++.++++.+++.+..+..| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234566677777766555444 47999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|||+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998866554445899999999999985 5999999999999999998654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=336.05 Aligned_cols=201 Identities=31% Similarity=0.448 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999963 57999999999999999999999999999999999999998875421 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|+|.++ ..||+||+.++... +. ++..++++..++.+..+ ....+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHH
Confidence 99999887 57999999876321 11 23344455555544333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999886554333 3789999999999875 489999999999999999888754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=328.64 Aligned_cols=194 Identities=25% Similarity=0.340 Sum_probs=164.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999987654 456778999
Q ss_pred EcCCCcccc-ccHhhccccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++|++.++. .|+++|+.+... ..++++.++++..++.++. ......||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 499999964321 2334556666666665433 233467999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 47899999999999987 4566665
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=330.17 Aligned_cols=199 Identities=48% Similarity=0.800 Sum_probs=173.9
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
.+.|+.|+|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 577899999743 57999999999999999999999999999999999999998874321 124
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
.++|++|++.+++.|++||+.++...+.++..++++.+++.+.++.+|.++++.++....+||||||||++|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 69999999999999999999987655556667888889998888888999999888889999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHH-HHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDR-CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~-~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+++||||||++||+.+.+.+++. ++.. ...|.|+|++||+++.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988872 3433 234799999999999998899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=332.52 Aligned_cols=193 Identities=29% Similarity=0.431 Sum_probs=159.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 57999999999999999999999999999999999999998875422 13469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++ +.|++||+.++.. .+. +++.++++..++.+..+.. ..+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987522 121 2344556666665444333 3589999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999986654333 48999999999998764 8999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=353.70 Aligned_cols=204 Identities=28% Similarity=0.419 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
|+++|++|+|+... ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 357999999999999999999999999999999999999999875321 13
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
..|+|++|++.++ +.||+||+.++.. .+. ++..+.++..++.+..+. ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 5699999999987 4799999987521 222 234445555555443332 34689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999986654433 38999999999999865 89999999999999999998875
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=335.23 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCCcee-------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-----~~~~g~~~~------------- 181 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|++ +|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999963 47999999999999999999999999999999999999 888875321
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..++|++|++.++..||+||+.++.. . . .++..++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 1346999999998888899999987531 1 1 2344556666666544433211 3689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++++. .||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999866544334 89999999999876 589999999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=337.47 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=162.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999998875321 12459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC-------------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
+|++|++.++. .||+||+.++... .. +++.+.++..++.. .......+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999998876 5999999875311 01 12223333333322 23445678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecC
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 327 (1128)
|||||++|||||+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999998665443468999999999999865 89999999999999999
Q ss_pred hhHHhh
Q 001189 328 FEDLSN 333 (1128)
Q Consensus 328 ~~~l~~ 333 (1128)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=352.08 Aligned_cols=202 Identities=31% Similarity=0.440 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 46999999999999999999999999999999999999999875422 1246999
Q ss_pred EecCCCCCc-ccHHHHHhcCCC-------CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGSA-------FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~~-------~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++.+|. .||+|||.|+.. .+ .++..++++..++.+..+.. ..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHH
Confidence 999999985 799999998732 12 13445556666665444433 35899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++|||||||++||+.+++.+.+.+.....+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998866544333 899999999999865 4899999999999999999988754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=344.09 Aligned_cols=206 Identities=24% Similarity=0.433 Sum_probs=167.2
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++|+|+.+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 247999999999999999999999999999999999999999874321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..||||+|+| .+|..||.|||.|+.. .+.+ +..++++.+++... .......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 234699999997 5788899999998631 2322 23344444444311 123345789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|+|+|||+++++. .||+|++|++|++++.|++++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999886544333 4899999999999875 589999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+....
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 76543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=347.25 Aligned_cols=203 Identities=26% Similarity=0.427 Sum_probs=167.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 186 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 186 (1128)
+.++++|++++|+. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 36999999999963 57999999999999999999999999999999999999999875432 23569
Q ss_pred EEEecCCCCC-cccHHHHHhc-CCC--CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILF-GSA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~-g~~--~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||||++.++ ..|++||+.+ +.. .+. ++..++++.+++.+..+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999999887 5799999985 221 121 23334455555443222 223589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|++++|||||++||+.+++++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999998665544458999999999999865 899999999999999999888543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=370.55 Aligned_cols=210 Identities=19% Similarity=0.229 Sum_probs=179.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999643 59999999999999999999999999999999999999999999999988877676677788999
Q ss_pred EcCCCcc--c-------cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 824 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 824 v~Q~~~l--f-------~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+||++.+ + ..|+++|+.... ..++++.++++..++.+. ......+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHHH
Confidence 9998753 2 348888875421 123345555555555433 333446899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.+ ||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999988653 6899999999999988 99999999999999999998865
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=354.87 Aligned_cols=202 Identities=30% Similarity=0.407 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 46999999999999999999999999999999999999999875432 1345999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999988 5699999998632 22 234556677777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++|||||||++||+.+.+.+.+.+..... .|.|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999886654433 3899999999999875 5899999999999999999888654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=353.43 Aligned_cols=203 Identities=27% Similarity=0.415 Sum_probs=171.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--CCcee----------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~--g~~~~----------~~~~ 185 (1128)
..++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++ |.+.. .++.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 35899999999963 469999999999999999999999999999999999999998 75432 1346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|+||+|++.+| ..||+|||.|+.. .+ .+++.++++..+|.+..+..| .+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999998 5699999998632 22 134556677777765555444 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC--CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++||||||||+||+...+++.+.+.....+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998876554433 789999999999865 5899999999999999999998765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=340.26 Aligned_cols=206 Identities=31% Similarity=0.462 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|+++.|+. ..+++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|.+.. .+..|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2357999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++ .+++.||+|||.++.. .+. +++.++++.++|.+.++..| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 122 34566777778776665554 48999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++.....
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999866544433 899999999999988899999999999999999988766543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=343.33 Aligned_cols=206 Identities=30% Similarity=0.511 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++|+|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 247999999999999999999999999999999999999999875421
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..|+||+|+| .+++.||+|||.|+.. .+. +++.++++.++|...+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 123599999998 5788899999988631 222 2345566666664322 12334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+...+++.+..... .|.|+|++||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999886554433 4899999999999975 589999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 76553
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=328.56 Aligned_cols=189 Identities=30% Similarity=0.480 Sum_probs=158.6
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEEEEecC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQV 192 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~ 192 (1128)
++|++++|+.. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999631 57999999999999999999999999999999999999999875432 23469999999
Q ss_pred C--CCCcccHHHHHhcCCC---CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 193 S--WIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 193 ~--~l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
+ .++..|++||+.++.. .+.++..++++.+++.+..+..| ..||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4568899999987632 12346677778887765544433 479999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 323 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 323 (1128)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999988655443468999999999999874 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=353.51 Aligned_cols=190 Identities=24% Similarity=0.375 Sum_probs=161.2
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------e----cCcEEEEecCCCCCc
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIFN 197 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~~ 197 (1128)
.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. + +..|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 357999999999999999999999999999999999999999875421 1 457999999999985
Q ss_pred -ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 198 -ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 198 -~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
.||+|||.|+.. .+ .++..++++..+|...++.. ..+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998632 12 23445566666665554444 358999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||+||+.+++++++.+..... .++|+|+|||+++++ +.||+|++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999987765443 489999999999986 45899999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=331.26 Aligned_cols=204 Identities=26% Similarity=0.446 Sum_probs=172.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+....+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 4699999999997433347999999999999999999999999999999999999999875322 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
++|++|++.+|..||+||+.++.. ....++.+..+...+.+.++.++.|..+.+.....+|||||||||+|||||+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999987643 2223333444455677788888877777788889999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeE
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 322 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 322 (1128)
+++||||||++||+.+.+++.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999998865543 346899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=304.32 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------- 813 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--------- 813 (1128)
.++++|+.++|+.. .+|++||++.++|+.+.|+|-|||||||+++||.=+-.|+.|.|.++|..|.-..
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999765 6999999999999999999999999999999999999999999999998875321
Q ss_pred ----hHHhhhceEEEcCCCccccc-cHhhccc--cCC--CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 814 ----LMDLRKILGIIPQSPVLFSG-TVRFNLD--PFS--EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 814 ----~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~--~~~--~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
.+.+|.++++|+|+..|++. |+.||.. |.. ..+. +.....|.++|+.+-.+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 34468899999999999975 9999984 211 1122 22333455566655444444 57
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||+||++|||||..+|+++++|||||+|||+---.+.+.++++. +|+|+++|||.|.+..+ +.+|+.+.+|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999998876 58999999999999999 99999999999999
Q ss_pred ecChhHHhhcCCC
Q 001189 959 YDTPEELLSNEGS 971 (1128)
Q Consensus 959 ~g~~~~l~~~~~~ 971 (1128)
+|+|+++..++.+
T Consensus 233 ~G~P~qvf~nP~S 245 (256)
T COG4598 233 EGPPEQVFGNPQS 245 (256)
T ss_pred cCChHHHhcCCCC
Confidence 9999999987754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=353.16 Aligned_cols=203 Identities=30% Similarity=0.460 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999963 57999999999999999999999999999999999999999875431 23469
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||+|++.+ ++.|++||+.++.. + +.+++.++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 68999999988641 1 12345666777777654432 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+++|++|||||||++||+.+...+++.+.....+|+|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999998765544446899999999999985 589999999999999999999876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 229 ~~ 230 (402)
T PRK09536 229 AD 230 (402)
T ss_pred cH
Confidence 53
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=335.87 Aligned_cols=199 Identities=29% Similarity=0.435 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 357999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
.++|++|++.++ ..||+||+.++... . .+++.++++..++.+.+ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 599999999887 47999999875310 1 12344455555554433 234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999886554333 3899999999999985 58999999999999999
Q ss_pred ChhHH
Q 001189 327 TFEDL 331 (1128)
Q Consensus 327 ~~~~l 331 (1128)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=331.23 Aligned_cols=198 Identities=30% Similarity=0.430 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 191 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 191 (1128)
++++|++++|+... .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 157999999999999999999999999999999999999998875432 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.++. .|++||+.++.. .+ .+++.+.++..++.+.++..+ .+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHcC
Confidence 998875 799999986521 11 234555666666655444333 58999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEe--CCeEeeecCh
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVH--EGMVKEEGTF 328 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 328 (1128)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++++. .||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999986654333 4899999999999875 589999999 7999987754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=331.80 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=156.7
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 157999999999999999999999999999999999999998875421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+..++|++|++.++. .||+||+.++.. .+ .+++.++++..++.+.++ ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 246999999998885 599999987532 11 234455556665544333 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeE
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 322 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 322 (1128)
+|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999886654433 48999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=325.17 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=161.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999998865 34567889999
Q ss_pred EcCCCcccc-ccHhhccccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~--~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+||++.++. .|+++|+.+... ..+..+.++++..++. ........+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-----------HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-----------hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998874 699999874321 1122334444443332 22233345799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
+|||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999864 47899999999999999987654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.62 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=165.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEe
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 190 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 190 (1128)
+.++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 57999999999999999999999999999999999999999876432 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~-~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|++.++. .||+||+.++... ..++..++++..++.+..+ ....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998875 7999999876321 2345566667776654433 3346899999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||||++||+.+.+.+.+.+..... .++|+|+|||+++++. .||+|++|++|+++++|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999886554323 4799999999999875 58999999999999887654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=332.52 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=162.5
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 118 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
+.++++|++|.|+.+. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 3589999999997422 247999999999999999999999999999999999999998875321
Q ss_pred e-cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 I-RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~-~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
. +..|+|++|++.++. .|++||+.++. ..+ .++..++++..++.+.. .....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHH
Confidence 1 146999999998875 59999998631 112 12345556666654333 2334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
|++|||||+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999886554333 5899999999999999889999999999998765
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=327.19 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=163.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EEcCCCccccc-cHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.++.. |+++|+.... ...++.+.+.++..++. .........||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-----------GYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-----------hhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 9999985421 11123334444444433 22333446799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 46899999999999987 999999874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=332.41 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=168.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 57999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC---CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+|++|++.++..|++||+.++... ..++..+.++..++.... .......||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876322 223455556666664211 1234568999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999886554333 48999999999999764 899999999999999999887654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=335.14 Aligned_cols=200 Identities=28% Similarity=0.452 Sum_probs=163.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
.++|+||++.+|. .||+||+.++.. .. .++..++++..++... ....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 5999999998875 799999986421 01 1233344444544332 2345578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999886654433 4899999999999987 58999999999999999
Q ss_pred ChhHHh
Q 001189 327 TFEDLS 332 (1128)
Q Consensus 327 ~~~~l~ 332 (1128)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=323.68 Aligned_cols=190 Identities=24% Similarity=0.414 Sum_probs=160.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..++++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 458999999999742 247999999999999999999999999999999999999999875432 2356
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|++|+|.+++.|++||+.+...++.+++.+.++ ++.....|||||+||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999899999998654444333333222 234567899999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999998865543 45899999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=338.65 Aligned_cols=202 Identities=32% Similarity=0.451 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 356999999999999999999999999999999999999998875321 13459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. +++.|++|||.++.. .+ .+++.++++..++.+..+. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999986 467899999987631 12 2334555666666554433 3468999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999988665444458999999999999988999999999999999998887544
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=332.71 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
++++|++++|+... .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 127999999999999999999999999999999999999998875321 13
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
..++|+||++.+|. .|++||+.++.. .+ .++..+.++..++.+.++. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 46999999999885 799999986421 22 1234455555565544333 33689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998866544333 8999999999999865 89999999999999998877643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=330.13 Aligned_cols=198 Identities=24% Similarity=0.380 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999875421 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.++. .|++||+.++. ..+ .++..+.++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998875 69999997641 111 23455667777776544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999998866544444 8899999999999865 899999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=339.57 Aligned_cols=204 Identities=25% Similarity=0.429 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 6899999999962 357999999999999999999999999999999999999999874321 234
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.++|++|+| .+++.||+||+.++.. .. .+++.++++.+++.+..+ ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 699999998 5678999999987521 22 134555666677654332 345689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998865544333 899999999999987 599999999999999999998876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 54
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=318.69 Aligned_cols=215 Identities=24% Similarity=0.488 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+++++|+++|++. .|++|+||+++||++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 38999999999754 79999999999999999999999999999999999999999999999998865 5678999
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+|.+..|+.. ||.|.|.++++ ....++.+ .+..|++++. +--.-......||-|++|++.+--+++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999965 99999877643 33444432 2445666653 22223344567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|+++|||||.|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.++..+..+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999876 58999999999999998 99999999999999999999987543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=325.12 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=162.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999962 57999999999999999999999999999999999999998875322 13469999
Q ss_pred ecCCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 190 PQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++.++ +.|++||+.++. ..+.++..++++..++.+..+. ....||||||||++|||||+.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 689999997652 1245566677777777655433 345899999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
++||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999988655443468999999999999864 8999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=297.69 Aligned_cols=206 Identities=27% Similarity=0.356 Sum_probs=173.5
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.|+++++++..+.. .-.+|++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|.++.+++-+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48888888877532 236899999999999999999999999999999999999999999999999999988654 3
Q ss_pred h-hceEEEcCCCcccc-ccHhhcccc-C---CC-C--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 R-KILGIIPQSPVLFS-GTVRFNLDP-F---SE-H--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r-~~i~~v~Q~~~lf~-~Tv~~nl~~-~---~~-~--~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
| +++|+|+|...|.. .|-.||+.. . .+ . ....-.+.|+++|+.+-+...| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 57999999998774 599999852 1 11 1 1222445566666655554444 6899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
++||||+...|+||+-||||-+||.+|-+.|-+.+.++. .+.|.++||||.....+|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998765 36899999999999999999999999999763
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=350.48 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=170.4
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcE
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 186 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 186 (1128)
.+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .++.|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 46999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||+|++.+| ..||.|||.|+.. .+. +++.+.++..++.+..+..| .+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5699999998732 222 34455566666655444433 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|++||||||||+||+.+++.+.+.+.+... .|.|+|+|||+++++ ..||+|++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998876554333 489999999999986 45999999999999999999988765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=375.66 Aligned_cols=220 Identities=24% Similarity=0.355 Sum_probs=177.8
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC----------
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 810 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~---------- 810 (1128)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---Hhh-hceEEEcCCC--cccc-ccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001189 811 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS 875 (1128)
Q Consensus 811 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~ 875 (1128)
+.+.. .+| +.|+||+|+| .++. .||++|+.+.. .... +++.++++.+++.+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHHh
Confidence 22222 233 4799999998 5665 49999986421 1122 22333444433311 012344
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEe
Q 001189 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5557899999999999999999999999999999999999999999999875 3 7899999999999987 99999999
Q ss_pred CCEEEEecChhHHhhcCC
Q 001189 953 SGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 953 ~G~i~~~g~~~~l~~~~~ 970 (1128)
+|+|++.|+++++...+.
T Consensus 244 ~G~i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQ 261 (623)
T ss_pred CCeecccCCHHHhhcCCC
Confidence 999999999999976443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=368.18 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=174.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 821 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999876543 3457789
Q ss_pred EEEcCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988875 99999975311 1111111 1123344443 33333344556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999864 47899999999999987 999999999999977654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=367.55 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=176.3
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HhhhceEEE
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 824 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 824 (1128)
++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred cCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 825 PQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 825 ~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
||++.++.. |+++|+.+... ....+..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987754 99999974311 11121111 123344443 45444455567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 47899999999999987 9999999999999999988763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=343.26 Aligned_cols=201 Identities=25% Similarity=0.394 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 56999999999999999999999999999999999999999875432 245699
Q ss_pred EEecCCCCC-cccHHHHHhcC-C--CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFG-S--AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|+||++.++ ..|++||+.+. . ..+.. +..++++..++.+.. .....+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 999999887 57999999742 1 12222 233344445544322 22346899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999866554446899999999999986 489999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=372.94 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.3
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhcc---CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001189 869 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 943 (1128)
Q Consensus 869 Gldt-~v~e~g~~LSgGqrqrl~lArall~---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~ 943 (1128)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+...+++.|+++. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 3677788999999999999999997 599999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 001189 944 DCDRILLL------DSGRVLEYDTPEEL 965 (1128)
Q Consensus 944 ~~D~i~vl------~~G~i~~~g~~~~l 965 (1128)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=330.45 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=162.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 47999999999999999999999999999999999999998875321 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|++|++.++. .|++||+.++.. ... +++.+.++..++.+. ......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999998886 599999986521 111 123334444444332 33445689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||+.+|++|||||||++||+.+.+.+++.+.....+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998865544445899999999998766 489999999999999999887754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=368.19 Aligned_cols=219 Identities=25% Similarity=0.437 Sum_probs=177.9
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~ 815 (1128)
.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 24699999999999999999999999999999999999987 799999999999876654
Q ss_pred H---hh-hceEEEcCCCc--ccc-ccHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 816 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 816 ~---~r-~~i~~v~Q~~~--lf~-~Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
. .| +.++|+||++. ++. .|+++|+... ..... +++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 3 33 57999999985 443 4888887521 11111 233444444444211 0123444568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 37899999999999887 9999999999999
Q ss_pred EecChhHHhhcC
Q 001189 958 EYDTPEELLSNE 969 (1128)
Q Consensus 958 ~~g~~~~l~~~~ 969 (1128)
+.|+++++....
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999987643
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=327.18 Aligned_cols=189 Identities=31% Similarity=0.530 Sum_probs=156.1
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEecCCC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQVSW 194 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q~~~ 194 (1128)
++|++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999963 46999999999999999999999999999999999999999876432 1346999999987
Q ss_pred C---CcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 195 I---FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 195 l---~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+ ++.||+||+.++... ..+++.++++..++.+.++. ...+||||||||++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 568999999875321 12345566777777654443 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeee
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 325 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 325 (1128)
+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++| +++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999988665544468999999999999865 8999999886 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.59 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=167.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999864 46664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
++..++|++|++.+|..||+||+.++.. . . .+++.++++.+++.+.+. +..+....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1346999999999988899999987521 1 1 234445566666543322 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|++|||||||++||+.+.+++++.+... .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865543 45789999999999985 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 87643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=328.15 Aligned_cols=200 Identities=29% Similarity=0.502 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 47999999999999999999999999999999999999999875321 13459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC--H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~~~--~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+|++|++.++. .|++||+.++.... . ++..++++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998886 59999998763221 1 1122222222 1111 123345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+.+|+++||||||++||+.+.+.+++.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999998665443468999999999998754 8999999999999999877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=346.14 Aligned_cols=203 Identities=25% Similarity=0.426 Sum_probs=167.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 186 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 186 (1128)
..|+++|++++|+. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999963 57999999999999999999999999999999999999999875432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhc-CCC--CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILF-GSA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~-g~~--~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
||+||++.++ ..|++||+.+ +.. .+. ++..++++.+++.+.. .....+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999999886 6899999975 211 121 2233344444443222 2334689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|+++||||||++||+.+++++++.+......|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999998765544468999999999999865 899999999999999999987643
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=327.73 Aligned_cols=196 Identities=23% Similarity=0.397 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
++++|++++|+.... +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 689999999974211 27999999999999999999999999999999999999999875422 234699
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|++|++.+|. .||+||+.+... .+ .+++.++++..++.+.++ ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999998886 599999975321 11 233455566666654433 3456899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
|+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+|||+++++.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999988665444458999999999998764 8999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=326.64 Aligned_cols=193 Identities=31% Similarity=0.457 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 47999999999999999999999999999999999999998875321 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++ ..|++||+.++.. ... +++.++++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 222 233445566666544433 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999986654433 48999999999998765 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=334.49 Aligned_cols=205 Identities=30% Similarity=0.441 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+. +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999963 2357999999999999999999999999999999999999998875321 2446
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|+|. ++..||+||+.++.. ++.+ +..++++..++.+.++.. ..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHH
Confidence 999999984 457899999987521 2322 244556666666554433 36899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++|||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999866544334 5899999999999888999999999999999998887654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=336.32 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--Ccee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g--~~~~-------------~~ 183 (1128)
.++++|++|.|+.. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++| +.+. .+
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 35799999999999999999999999999999999999999873 2222 23
Q ss_pred CcEEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..|||++|+|. +++.||+|||.++.. .+. +++.++++.+++.+..+..| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 46999999984 568899999987622 222 33556677777766555444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999886654433 3899999999999998899999999999999999988765
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=338.39 Aligned_cols=206 Identities=26% Similarity=0.447 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.++++|++++|+... .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 257999999999999999999999999999999999999999875321
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 -IRGTVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..|+|++|+| .++..|++|||.++. .... +++.++++.+++.... ......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 123599999998 467889999998752 1222 2344455556654211 1234468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|++|||||||++||+.+.+++.+.+.....+|.|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998865544345899999999999876 589999999999999999988
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=336.32 Aligned_cols=206 Identities=28% Similarity=0.415 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCC---CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------e
Q 001189 119 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~---~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~ 182 (1128)
.++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999875321 2
Q ss_pred cCcEEEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..++|++|+|. ++..|+.||+.|+.. .+ .+++.++++.+++.+.++..+ .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 346999999984 567799999998631 12 234566777778876655544 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999886554333 489999999999998889999999999999999999886
Q ss_pred hcc
Q 001189 333 NNG 335 (1128)
Q Consensus 333 ~~~ 335 (1128)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 553
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=332.65 Aligned_cols=206 Identities=24% Similarity=0.366 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 46999999999999999999999999999999999999874 553211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..|+|++|++.++..||+|||.++.. .+ .++..++++.+++.+.+. + .......+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 2346999999999988999999987632 11 123344555555532221 1 1233567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865544 457899999999999754 8999999999999999998
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88644
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=367.23 Aligned_cols=213 Identities=23% Similarity=0.406 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 820 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred eEEEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~~LSgGqrqrl~l 891 (1128)
++|+||++.+|.. |+++|+.+... ...++.. ..+.+.++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988765 99999864321 1111111 1123334443 332221 22345799999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999998864 47899999999999987 999999999999999988765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=322.38 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=163.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. .|+.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 789999999964 369999999999999999999999999999999999999999999999998752 22 7888999
Q ss_pred EcCCCccc-cccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++|++.++ ..|+++|+.+.. ...++++.++++..++.+... ....+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 569999986422 223445666777766654332 223479999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998753 57899999999999988 99987743
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=335.84 Aligned_cols=206 Identities=22% Similarity=0.341 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+....+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997433346999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. ++..||.|||.++. .... +++..+++.+++.+..+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 56889999998752 1222 234556677777654433 3358999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++++..||+|++|++|++++.|+++++....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999998865544333 89999999999999889999999999999999998887553
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.02 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC---CCCCCcee------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~---~~~g~~~~------------~~ 183 (1128)
.|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++ |++|.+.. .+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 579999999999999999999999999999999999974 56664321 23
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..|+|+||++.+|..|++||+.++... ..+++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 469999999999989999999875211 11234556666666543322 23445678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|+++||||||++||+.+..++++.+... .+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998865443 35899999999999876 589999999999999999888764
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=337.70 Aligned_cols=200 Identities=28% Similarity=0.402 Sum_probs=165.2
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
.++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 357999999999999999999999999999999999999998875321 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++ +.|++||+.++.. .+ .+++.++++..++.+.++..+ .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 699999999887 5799999987421 11 234556677777766555444 4799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999886554333 4899999999999875 5899999999999999999888654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=331.62 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=165.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCcee-------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~------------- 181 (1128)
++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 46999999999999999999999999999999999999987 764321
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..++|+||++.++..|++||+.++.. .+. ++..++++..++...+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 1346999999999988999999987521 111 23445555566642221 1223445789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998755443 33589999999999876 5899999999999999998887
Q ss_pred hh
Q 001189 332 SN 333 (1128)
Q Consensus 332 ~~ 333 (1128)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 54
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=326.86 Aligned_cols=193 Identities=24% Similarity=0.419 Sum_probs=157.5
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996322 247999999999999999999999999999999999999998875421 11
Q ss_pred -CcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 -GTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 -~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..++|++|++.++ ..|++||+.++. ..+ .+++.+.++..++.+.++ .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 4699999999887 579999998642 122 123444555555544333 23468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.+..... .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999886554333 479999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=329.21 Aligned_cols=201 Identities=20% Similarity=0.369 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e-------cCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I-------RGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~-------~~~i~~ 188 (1128)
++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. + +..++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 689999999963 57999999999999999999999999999999999999999875421 1 135999
Q ss_pred EecCCCC-CcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l-~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+ +..|++||+.++.. ... ++..+.++..++.. .......+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 47899999986421 221 12233344444432 23445578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|+++||||||++||+.+.+.+++.+.... .+|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998665443 258999999999999988999999999999999998877543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=326.42 Aligned_cols=199 Identities=27% Similarity=0.503 Sum_probs=163.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999632 257999999999999999999999999999999999999998875421 2345999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.++ ..|++||+.+.. .... +++.++++..++.+..+ ....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 689999998642 1121 34455666666654433 22358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999998865443 346899999999999865 899999999999999987664
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=311.45 Aligned_cols=212 Identities=25% Similarity=0.439 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++..|.. -.+|++|||++++||+++|+|+||+||||||++|+|..++.+|.+.. .+..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999973 47999999999999999999999999999999999999998775432 2345
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|+||||.-.+| ..||.||+.+|......+ ......+++..+.+|.- ......++.+|||||+|-+||||||.++|
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~---~~~~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDK---EAQERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccc---ccccccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 99999999998 689999999884322110 00111144455566642 23456778899999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhcchH
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNGEL 337 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 337 (1128)
++|+|||||.+|-|...+.|++.+.....+ |.||++|-++..+. +.+||.++|++|+|+.+|+.+++..+...
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 999999999999999999999976655434 67999999998884 56899999999999999999999877543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=321.57 Aligned_cols=197 Identities=29% Similarity=0.469 Sum_probs=172.6
Q ss_pred cEEEEEEEEEeCCCC-------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~-------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 815 (1128)
.++++|+++.|+... ..+++||||+|++||++||||.|||||||+-++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 388999999996421 36899999999999999999999999999999999999999999999999987654
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
.....+++.+.|+.+++.+ ++.+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1112456888888888754 555655 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+-+|+++++|||||+||...++.|...|.++. .+-|.++||||++.+.. ||||.||..|+|+|.|..+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998865 37899999999999999 999999999999999999999998877
Q ss_pred chHHHHHh
Q 001189 972 SFSKMVQS 979 (1128)
Q Consensus 972 ~~~~~~~~ 979 (1128)
.|.+..-+
T Consensus 204 pYTk~Ll~ 211 (268)
T COG4608 204 PYTKALLS 211 (268)
T ss_pred HHHHHHHH
Confidence 77765544
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=320.74 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=160.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987764 356788999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.+... ..+..+.++++..++.+++. ....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999864321 11334666666666654432 333579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
++|||||||++||+.+.+.+++.|++.. ++.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999863 578999999998443 3566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=333.16 Aligned_cols=202 Identities=31% Similarity=0.450 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 4899999999963 47999999999999999999999999999999999999998875321
Q ss_pred ---ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..++|++|++.++ ..|++||+.++. .... +++.+.++..++... ......+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 234699999999887 479999997641 1121 223334444444322 23345789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999988654443458999999999999865 899999999999999998
Q ss_pred hHHhhc
Q 001189 329 EDLSNN 334 (1128)
Q Consensus 329 ~~l~~~ 334 (1128)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=325.78 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=161.9
Q ss_pred CcEEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e----------
Q 001189 118 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~---------- 182 (1128)
+.++++|++++|+.... .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36899999999974221 35999999999999999999999999999999999999999875421 0
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 183 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 183 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
+..++|++|++.++. .|+.||+.++. ..+ .+++.++++..++.+.++..+ ..|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 246999999998875 69999997642 111 234556677777765554433 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEee
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 324 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999886654433 3889999999999988899999999999875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=334.58 Aligned_cols=203 Identities=23% Similarity=0.353 Sum_probs=166.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------e
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~ 182 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 36899999999962 57999999999999999999999999999999999999998875321 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..++|++|++.++. .||.||+.++. ..+. ++..+.++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 345999999999886 59999998641 1222 12334455555543332 2346899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999886554333 37999999999998865 899999999999999999988
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=330.59 Aligned_cols=203 Identities=27% Similarity=0.423 Sum_probs=163.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+.. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999731 56999999999999999999999999999999999999998875321 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|++|++.++ ..||+||+.++.. .+. ++..++++..++.. .........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999888 5799999987521 121 23334444444432 001234457899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999886655433 3899999999999865 589999999999999999887754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=323.07 Aligned_cols=193 Identities=24% Similarity=0.414 Sum_probs=158.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------ecCcEEEEec
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------IRGTVAYVPQ 191 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------~~~~i~~v~Q 191 (1128)
++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999962 57999999999999999999999999999999999999998875432 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.++. .|++||+.+... .. .+++.+.++..++...++ ....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 998875 699999976421 11 223444555555544332 34468999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
|+++||||||++||+.+.+++.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988665444458899999999998864 8999999999988653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.25 Aligned_cols=204 Identities=29% Similarity=0.450 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4889999999963 246999999999999999999999999999999999999999875421 12359
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++. +++.||+||+.++. ..+. +++.++++..++.+.++..+ ..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 99999973 67889999998653 2332 23456666677765554433 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|+++||||||++||+.+.+.+++.+..... .|.|+|++||+++++. .||+|++|++|++++.|+++++....
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 999999999999999999999999999886554433 3899999999999985 68999999999999999999886543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=328.34 Aligned_cols=201 Identities=29% Similarity=0.452 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 57999999999999999999999999999999999999999875321 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|++.++ ..||+||+.++. ..+. +++.++++..++...++ .....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 99999999887 579999998752 1121 23344455555543333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988654433458999999999999865 899999999999999998887543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=335.92 Aligned_cols=205 Identities=24% Similarity=0.421 Sum_probs=165.5
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 146999999999999999999999999999999999999998875321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..|+|++|++ .+++.||+||+.++.. .+.++ ..++++..++... .......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 124599999998 5778899999987521 22222 2333444444321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+.+++.+......|+|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998866544345899999999999886 5899999999999999998887
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=328.27 Aligned_cols=200 Identities=28% Similarity=0.434 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 57999999999999999999999999999999999999998875321
Q ss_pred -ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 -IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..|+|++|++.++. .|++|||.++. ... .+++.+.++..++...++ ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 1346999999998875 69999997421 111 123344455555544333 33458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988654433458999999999999865 89999999999999999887
Q ss_pred Hh
Q 001189 331 LS 332 (1128)
Q Consensus 331 l~ 332 (1128)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=370.78 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=84.2
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
+....+|||||-||+-||+.|-.+= =+++|||||.||-+.-...+.+.|+++. .|.|||+|-||.++++.||+|+-|
T Consensus 1382 ~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iidi 1461 (1809)
T PRK00635 1382 GQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIHL 1461 (1809)
T ss_pred cCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 4556789999999999999998762 4789999999999999999999999887 489999999999999999999999
Q ss_pred ------eCCEEEEecChhHHhh
Q 001189 952 ------DSGRVLEYDTPEELLS 967 (1128)
Q Consensus 952 ------~~G~i~~~g~~~~l~~ 967 (1128)
..|+|+.+|+|+++..
T Consensus 1462 GPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1462 GPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred CCCccCCCCEEEecCCHHHHhh
Confidence 4799999999999975
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=325.04 Aligned_cols=189 Identities=26% Similarity=0.468 Sum_probs=157.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 357999999999999999999999999999999999999998875421 234
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++ ..|++||+.++.. .+ .+++.+.++..++.+.++..+ .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 699999999987 5799999987521 11 234556666667665444333 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999988665443458999999999999875 89999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=336.56 Aligned_cols=207 Identities=23% Similarity=0.382 Sum_probs=164.7
Q ss_pred CcEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------
Q 001189 118 PAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 181 (1128)
..++++|++++|+.+. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999997432 136999999999999999999999999999999999999998875321
Q ss_pred ---ecCcEEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..|+|++|+|. ++..|++||+.++.. ...+ ++.+.++..++.. + .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCHH
Confidence 1346999999984 567899999987532 2221 2223333333311 1 123445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecC
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 327 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999886544333 4899999999999875 589999999999999999
Q ss_pred hhHHhhc
Q 001189 328 FEDLSNN 334 (1128)
Q Consensus 328 ~~~l~~~ 334 (1128)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 8887654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=335.92 Aligned_cols=202 Identities=29% Similarity=0.503 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.+.++|+++.|+. .+.+|+||||++++|+++|++||||||||||+++|+|++.|++|.+.. .+.+||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999972 357999999999999999999999999999999999999999876432 234699
Q ss_pred EEecCCCCC-cccHHHHHhcC-----CC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFG-----SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g-----~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|+||+|.++ ..|++||+.|. .+ .+.+++.++++..+|.+.. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999876 68999999863 21 2345677788888776522 22346899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC-cEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|++|||||||++|||.+++.+++.+.....+| +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999998766655556 799999999999887 89999999999999999888653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.76 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 368999999999742 246999999999999999999999999999999999999998875321 2345
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|+|. ++..|+++|+.++.. ... ++..++++..++.+..+ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 999999985 456799999987632 122 23344455555543332 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999886554333 38999999999999888999999999999999999887654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.54 Aligned_cols=206 Identities=27% Similarity=0.378 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 479999999999999999999999999999999999986 35664211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..|+|++|++.++..|++||+.++.. .+. ++..++++..++...+. ........+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2346999999999988999999987521 222 33445556665533221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865543 35789999999999886 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87643
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=325.37 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=159.6
Q ss_pred EEEEEEEEEeCC----C-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC--CE--ecCCCCh
Q 001189 744 IKFEDVVLRYRP----E-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID--GF--DIAKFGL 814 (1128)
Q Consensus 744 i~~~~v~~~y~~----~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~--g~--~i~~~~~ 814 (1128)
|+++|++++|+. + .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 1369999999999999999999999999999999999999999999998 42 6665555
Q ss_pred HH---h-hhceEEEcCCCccccc-cHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhH
Q 001189 815 MD---L-RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQ 885 (1128)
Q Consensus 815 ~~---~-r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGq 885 (1128)
.. + ++.++|+||++.++.. |+++|+.+. ......+..+ .+.++++.+ |++.. ......+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 2 4579999999988865 999998631 1111111111 122333332 33322 234567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999865 47899999999999876 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.22 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999998875321 2345
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC-CCHHHH----HHHHHHh-CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA-FEPARY----EKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~-~~~~~~----~~~~~~~-~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
++|++|++.+|. .||+||+.++.. .+..+. .++++.. ++.+ .......+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHH
Confidence 999999998886 699999987532 121222 2222222 1111 122345689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998866544446899999999998765 5899999999999999999888643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=324.46 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|+++.|+.. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 57999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++. .|++||+.++.. .+ .+++.++++.+++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 5999999998885 699999987521 11 13445566666766544433 35899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988665443458999999999999875 899999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.56 Aligned_cols=208 Identities=22% Similarity=0.285 Sum_probs=169.1
Q ss_pred cEEEEEEEEEeCCC------------------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 743 SIKFEDVVLRYRPE------------------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~------------------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
.|+++||++.|+.. .+++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877531 235899999999999999999999999999999999999999999999
Q ss_pred CCEecCCCChHHhhhceEEEcCCCcccc-ccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 805 DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 805 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+|. +++++|++.++. .|+++|+... ...+.++..+.. .+.++. .+++..+.....+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH--cCCchhhcCCccc
Confidence 984 456788876664 4999998632 122333332211 112221 2444555556678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 47899999999999877 99999999999999
Q ss_pred ecChhHHhhcCC
Q 001189 959 YDTPEELLSNEG 970 (1128)
Q Consensus 959 ~g~~~~l~~~~~ 970 (1128)
.|++++++++..
T Consensus 224 ~g~~~~~~~~~~ 235 (264)
T PRK13546 224 YGELDDVLPKYE 235 (264)
T ss_pred eCCHHHHHHHhH
Confidence 999999987543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=331.23 Aligned_cols=204 Identities=27% Similarity=0.434 Sum_probs=166.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
+.++++|+++.|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 35899999999963 57999999999999999999999999999999999999998874311
Q ss_pred ---------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 182 ---------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 182 ---------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
.+..++|+||++.++. .||+||+.++. ..+. ++..+.++..++...+ .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 1346999999999885 69999997642 1121 2334445554543322 12345
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
..||||||||++|||||+++|+++||||||++||+.+.+++++.+......|+|+|+|||+++++.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999998655443458999999999999885 899999999999
Q ss_pred eeecChhHHhhc
Q 001189 323 KEEGTFEDLSNN 334 (1128)
Q Consensus 323 ~~~g~~~~l~~~ 334 (1128)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999998887543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=330.16 Aligned_cols=201 Identities=26% Similarity=0.435 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4789999999963 57999999999999999999999999999999999999998875421 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+|++|++.++. .|+.||+.++.. + +.+++.++++..++.+..+. ....||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHH
Confidence 99999998875 499999987621 1 12344555666666544432 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|+++..|+.+++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998866543345899999999999876 589999999999999999888754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=332.89 Aligned_cols=201 Identities=23% Similarity=0.374 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999962 57999999999999999999999999999999999999999875321 1246
Q ss_pred EEEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|++. ++..|+.+|+.++. ..+. +++.++++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 46779999998641 1222 22344555556544332 2346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998866554445899999999999985 4899999999999999998887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=365.70 Aligned_cols=212 Identities=26% Similarity=0.443 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEC----------------
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILID---------------- 805 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~---------------- 805 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CEecC-------CCC---hHHhhhceEEEcCC-Cccccc-cHhhccccCC---CCCH----HHHHHHHHHhcH
Q 001189 806 -------GFDIA-------KFG---LMDLRKILGIIPQS-PVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHL 859 (1128)
Q Consensus 806 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l 859 (1128)
|.++. ..+ ...+|+.++|+||+ +.+|.. |+++|+.+.. .... +++.++++.++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g- 157 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ- 157 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence 33221 111 12457789999998 567764 9999986411 1111 22334444444
Q ss_pred HHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeec
Q 001189 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAH 937 (1128)
Q Consensus 860 ~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH 937 (1128)
++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||
T Consensus 158 ----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 158 ----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred ----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4333444457899999999999999999999999999999999999999999999864 3789999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 938 ~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999987 999999999999999999988653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.04 Aligned_cols=201 Identities=21% Similarity=0.373 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999963 57999999999999999999999999999999999999999875321 1346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|++.++. .|++||+.+... .+. .++.+.++..++.. ........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 999999998875 699999987531 121 12333333333332 2334557899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||||+.+|++|||||||++||+.+.+++.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999988755443345899999999998775 589999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.22 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=168.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46999999999963 47999999999999999999999999999999999999998875421 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC--------C---CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA--------F---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
++|++|++.++ ..|+.||+.++.. . ..++...+++.+++.+.++..+ .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 99999998765 5699999987521 1 1234556677777765554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++++. .||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999876544333 3899999999999985 5899999999999999998887
Q ss_pred hh
Q 001189 332 SN 333 (1128)
Q Consensus 332 ~~ 333 (1128)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=329.92 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=165.5
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------------ 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------------ 181 (1128)
|+++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 57999999999999999999999999999999999999998874321
Q ss_pred -------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCC
Q 001189 182 -------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245 (1128)
Q Consensus 182 -------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~ 245 (1128)
.+..++|++|++.++ ..|+.||+.++. .... +++.++++..++.+.++ ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 134699999999887 589999998742 1111 23445555555554433 33468
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
||||||||++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999886554433 3899999999999985 58999999999999
Q ss_pred eecChhHHhhc
Q 001189 324 EEGTFEDLSNN 334 (1128)
Q Consensus 324 ~~g~~~~l~~~ 334 (1128)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99998887644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.26 Aligned_cols=206 Identities=18% Similarity=0.297 Sum_probs=165.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 579999999999999999999999999999999999864 56664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSAF----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..++|++|++.+|..|++||+.++... . .++..++++..++...+. ........+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 23469999999999988999999865211 1 122333444444432111 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998755443 34689999999999876 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87644
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.75 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 346999999999999999999999999999999999999998874321 2345
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|++ .++..||+|||.++.. ... ++..++++.+++....+. ...+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 99999997 4678899999987521 121 334455666666433322 245899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999866544345899999999999986 5999999999999999999887654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=321.05 Aligned_cols=191 Identities=21% Similarity=0.380 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++|.|+. +++|+|+||++++| +++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 47999999999999 99999999999999999999999999875432 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+|. .||+||+.+.. ..+ .++..++++..++.+..+. ...+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 999999885 59999997631 111 2345566677777654432 2357999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
+.+|+++||||||++||+.+.+++++.+.... +++|+|++||+++++. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999988654433 4689999999999986 58999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.92 Aligned_cols=200 Identities=21% Similarity=0.357 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4789999999963 47999999999999999999999999999999999999999875321 1235
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCC---------------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSAF---------------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++|++|++.++. .||+||+.++... ..+++.+.++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999999886 5999999875321 0122333333333332 233455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999998865443 347899999999999875 899999999999999998
Q ss_pred hHHhh
Q 001189 329 EDLSN 333 (1128)
Q Consensus 329 ~~l~~ 333 (1128)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.80 Aligned_cols=208 Identities=27% Similarity=0.423 Sum_probs=177.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh-ce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 821 (1128)
-++++|++++|++- +||+||||++.+||++|++|.||||||||+|.|.|.|+|++|+|.+||.++.-.++.+.++ .|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999754 7999999999999999999999999999999999999999999999999999888877665 59
Q ss_pred EEEcCCCccccc-cHhhccccCCCCC-------HHHHHHHHHHhcHHHHHHHccC--CcchhhhcCCCCCChhHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHS-------DADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~-------~~~i~~~l~~~~l~~~i~~lp~--Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|.|+..|+.. ||.|||-...+.. ...+.+ ...+.+.++.. .+++.+ .+||.||||.+.|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~-----~A~~~l~~lg~~~~~~~~v----~~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR-----RARELLARLGLDIDPDTLV----GDLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHH-----HHHHHHHHcCCCCChhhhh----hhCCHHHHHHHHH
Confidence 999999999965 9999996543321 122221 12233443322 244554 4699999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
|||+..+++|||||||||+|+....+.+.+.++++. +|.++|+|||||+++.. ||||.||.||+++..+.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999999876 58999999999999988 99999999999998766
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=328.69 Aligned_cols=202 Identities=21% Similarity=0.370 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999962 57999999999999999999999999999999999999999875321 1234
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC-----------C-----C---H---HHHHHHHHHhCcHHHHhcCCCCCcccccCC
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA-----------F-----E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~-----------~-----~---~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~ 242 (1128)
++|++|++.++. .|++||+.++.. + . . +++.+.++..++. ......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 899999999885 599999997521 0 0 0 1122223333332 233455
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCC
Q 001189 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEG 320 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 320 (1128)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999998866544333 7899999999999865 8999999999
Q ss_pred eEeeecChhHHhhc
Q 001189 321 MVKEEGTFEDLSNN 334 (1128)
Q Consensus 321 ~i~~~g~~~~l~~~ 334 (1128)
++++.|+.+++...
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999998887543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=322.68 Aligned_cols=188 Identities=34% Similarity=0.543 Sum_probs=153.7
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++++|+.. .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..|+|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 68999999632 257999999999999999999999999999999999999999875421 13469999
Q ss_pred ecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 190 PQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 190 ~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+|++. +++.|++||+.++.. .+. ++..+.++..++.+.++. ....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99984 568899999987521 221 234445566666544433 3468999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998665444458999999999999876 89999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=311.03 Aligned_cols=167 Identities=28% Similarity=0.582 Sum_probs=148.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.... .+..++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999742 247999999999999999999999999999999999999998875421 2346999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 189 VPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
++|++++++.|++||+ ..+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999989999998 35799999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
|||||++||+.+.+.+++.+... .+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998866543 3589999999999999889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.94 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=158.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
|+++|++++|+. +. .|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999875432 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC--C-----CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIFN-ATVRDNILFGSA--F-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++. .|++||+.++.. . ++++..++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999885 599999987532 1 1335566777777766555444 479999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999886654333 48999999999999865 8999999999988653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=328.01 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCce-------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA------------- 180 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~------------- 180 (1128)
.++++|++|+|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 57999999999999999999999999999999999999987 35321
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.++..++|++|++.+++.|++||+.++... .. +++.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 124569999999999888999999876321 11 22333344444433221 224556789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999998755433 457999999999999876 79999999999999999888
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7544
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.86 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=165.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC--C---CCCCce------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASA------------ 180 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~--~---~~g~~~------------ 180 (1128)
+.++++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|.+.
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999987 3 355421
Q ss_pred --eecCcEEEEecCCCCCcccHHHHHhcCCC----CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 181 --VIRGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 181 --~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
..+..++|++|++.++..|++||+.++.. .+++ +..++++..++.+.+. +.......+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 12346999999999988899999987531 1211 2333444445433221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+...+.+.+.. ..+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999875544 334789999999999876 58999999999999999998
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 87644
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=325.17 Aligned_cols=199 Identities=28% Similarity=0.488 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 47999999999999999999999999999999999999999875421 13359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-C--C-HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++|++.+|. .|++||+.++.. . . .+...++++..+. + .........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999886 599999987532 1 1 1222333333321 1 11223455689999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
.+|+++||||||++||+.+.+++++.+..... .++|+|++||+++++.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999886654433 37999999999999885 899999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=345.86 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCCCC---------------------CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 119 AISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~---------------------~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.|+++|+++.|..... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4777777777764221 2379999999999999999999999999999999999999987
Q ss_pred Ccee----------------ecCcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCC
Q 001189 178 ASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPG 233 (1128)
Q Consensus 178 ~~~~----------------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~ 233 (1128)
.+.. .+..++|++|++.+| +.||+|||.++.. .+ .++..++++.+++.+..+..|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 5421 124699999999988 4799999987531 22 234556677777765554444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cC
Q 001189 234 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QV 311 (1128)
Q Consensus 234 g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~ 311 (1128)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|+|||+++++. .|
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 58999999999999999999999999999999999999999887655433 4899999999999875 58
Q ss_pred CEEEEEeCCeEeeecChhHHhhc
Q 001189 312 DRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 312 d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998765
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.65 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCCCC----------CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------
Q 001189 118 PAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~----------~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------ 181 (1128)
+.++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996321 246999999999999999999999999999999999999998875321
Q ss_pred ---------ecCcEEEEecCC--CCC-cccHHHHHhcCC-----CCCH----HHHHHHHHHhCcHHHHhcCCCCCccccc
Q 001189 182 ---------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 240 (1128)
Q Consensus 182 ---------~~~~i~~v~Q~~--~l~-~~Tv~eni~~g~-----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg 240 (1128)
+++.|+||+|+| .++ ..||.|||.++. ..+. ++..+.++..++.+. ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 245799999998 365 689999996531 1232 233445555565321 122
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEe
Q 001189 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH 318 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 318 (1128)
....+|||||||||+|||||+.+|+++|+||||++||+.+...+.+.+..... .|.|+|+|||++..+.. ||+|++|.
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 33468999999999999999999999999999999999999999986654433 38999999999999875 89999999
Q ss_pred CCeEeeecChhHHhhc
Q 001189 319 EGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 319 ~G~i~~~g~~~~l~~~ 334 (1128)
+|+|++.|+.+++..+
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999998765
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=328.77 Aligned_cols=206 Identities=24% Similarity=0.350 Sum_probs=166.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC---CCC--CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE---LPP--VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~---~~~--~~g~~~~----------- 181 (1128)
+.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+ ++| ++|.+..
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 36899999999963 5699999999999999999999999999999999996 454 3553211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.++.++|+||++.++..|++||+.++.. ... ++..++++.+++.+.+. +.....+.+|||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQ 151 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHH
Confidence 1346999999999988899999986521 111 23444555555543221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998865544 45799999999999885 58999999999999999999
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.21 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4789999999963 57999999999999999999999999999999999999999875421 12459
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSA-F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|++|++.+ +..||+||+.++.. . ..++..++++..++.+..+. ....||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999999987 57899999987532 1 12234555666666543332 34689999999999999
Q ss_pred HHc------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 259 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 259 al~------~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||+ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999988655443 45899999999999986 589999999999999999888
Q ss_pred Hhh
Q 001189 331 LSN 333 (1128)
Q Consensus 331 l~~ 333 (1128)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.17 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=167.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
+.|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999963 5799999999999999999999999999999999999975 6664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---C--C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..++|++|++.++..||+||+.++.. . . .+++.++++..++.+.+. ......+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 2346999999999988899999987521 1 1 123455566666643321 1234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998865443 347899999999999864 899999999999999998
Q ss_pred hHHhh
Q 001189 329 EDLSN 333 (1128)
Q Consensus 329 ~~l~~ 333 (1128)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 88754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.46 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=166.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
+.++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 46999999999962 5799999999999999999999999999999999999875 5664221
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCC---CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..++|++|++.++..|++||+.++. ..+.+ +..++++.+++...+. ........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 234599999999998899999998752 12222 2344555555432211 123345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++++.+... .+++|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765443 35799999999999885 489999999999999999988
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+..+
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 7543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=322.02 Aligned_cols=199 Identities=25% Similarity=0.369 Sum_probs=161.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3599999999996 257999999999999999999999999999999999999999875421 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++|++.+++.|++||+.++.. .+.++..+.++..++.+ +.......+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999998899999986421 12233444555555432 122345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEe-CCeEeeecChh
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVH-EGMVKEEGTFE 329 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 329 (1128)
+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999876544333 4889999999999998899999995 56666777764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=323.79 Aligned_cols=186 Identities=27% Similarity=0.463 Sum_probs=155.9
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcc---ccccHhhccccC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPF 842 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~Tv~~nl~~~ 842 (1128)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++|+||++.+ +..|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 356789999999976 346999998532
Q ss_pred C--------CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 843 S--------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 843 ~--------~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
. .. .++++.++++..++.+. ......+||||||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTEL-----------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 01 12234555555554433 33344579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 912 DVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 912 D~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+.+.+.+.+.|++.. +++|+|++||+++++.. ||+|+++ +|++++.|+++++..+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999865 47899999999999877 9999999 8999999999998653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=319.82 Aligned_cols=200 Identities=25% Similarity=0.426 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. .+ .++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999963 22 3999999999999999999999999999999999999875422 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC----CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIFN-ATVRDNILFGSA----FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~----~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++. .|++||+.++.. .. .+++.++++..++.+.++..+ ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99998886 599999987521 11 234566777778776665554 479999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999886554333 38899999999999865 8999999999999999998887553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1128 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-60 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 5e-42 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-41 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-41 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 6e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-39 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-39 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-39 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-38 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-38 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-33 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-30 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-30 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-31 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-30 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-30 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-30 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-30 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-30 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-30 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-29 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-29 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-29 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-22 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-21 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-21 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 7e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1128 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-163 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-31 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-128 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-70 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-34 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-127 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-34 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-127 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-36 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-124 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-37 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-87 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-37 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-86 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-39 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 7e-86 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-40 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-76 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-35 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 8e-75 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-40 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-74 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-24 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-73 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-38 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-70 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-68 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-36 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-68 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-36 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-56 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-22 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-28 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-22 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-23 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-16 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-09 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 9e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-11 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-05 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 487 bits (1256), Expect = e-163
Identities = 95/348 (27%), Positives = 182/348 (52%), Gaps = 9/348 (2%)
Query: 728 VIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 785
+IE++ + WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 786 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845
++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
SD ++W+ + L+ I + LD + + G S G +QL+ L+R++L ++KIL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 906 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965
E +A +D T +I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 966 LSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQ 1025
F + N ++ A ++++ E + Q+ WL
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKVT---ATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
Query: 1026 YALAVSLTSSH---NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHD 1070
+++ + H +D+ + +E + ++++ + + + +
Sbjct: 298 ANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQN 345
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-31
Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+++++ + L NI+ I G V ++G TG GK++L+SA L + +
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR----LLNT 73
Query: 179 SAVI---------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 223
I R +PQ +IF+ T R N+ +A K D
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
L+ ++ PG + + G +S G KQ + +AR+V S + + + D+P + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 284 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT-FEDLSNNGELFQKLM 342
+ R ++ + T +L ++ + + D+ +++ E V++ + E + F
Sbjct: 194 I-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 343 ENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 398
+ KM + + P N LP E S + S+ I+ E
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVE-SRDVQVGANMSLGIRPE 307
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 422 bits (1086), Expect = e-128
Identities = 208/990 (21%), Positives = 404/990 (40%), Gaps = 89/990 (8%)
Query: 47 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI 106
+G ++ + + + T + F + I NA + + + + + I
Sbjct: 312 YGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI 371
Query: 107 LLPNPPLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 160
+ SG + +N +FS+ S+ E L +NL + G VA+VG +G G
Sbjct: 372 ---DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428
Query: 161 KTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGS 208
K++ + M P+ D + +R + V Q +F T+ +NI +G
Sbjct: 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR 488
Query: 209 AFEPARYEKAIDV--TSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265
E ++ + +D + LP T +GERG +SGGQKQR+++ARA+ N
Sbjct: 489 --EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMV 322
+ + D+ SALD V + G+T +++ H LS V D I G++
Sbjct: 547 ILLLDEATSALDTESEAVVQAA-LDKAREGRTTIVIA---HRLSTVRNADVIAGFDGGVI 602
Query: 323 KEEGTFEDLSNNGELF------QKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDND 376
E+G ++L ++ Q E + K++ + +D + ++ +
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR 662
Query: 377 LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL 436
+++ ++ K + + + SF + K ++ + C + L
Sbjct: 663 STRKSICGPHDQDRKLSTKEALDEDVPPASFWRI--LKLNSTEWPYFVVGIFCAIINGGL 720
Query: 437 RVSSSTWLS------YWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 490
+ + S S + ++ ++ +L + + +
Sbjct: 721 QPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEIL 780
Query: 491 AKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLL 548
KRL + S+LR + +F N G + R A D V + + Q +
Sbjct: 781 TKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDA----AQVKGATGSRLAVIFQNI 836
Query: 549 STFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 601
+ I+S + W AI+P++ + + S +K + S A
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQ-ALKDKKELEGSGKIAT- 894
Query: 602 GEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 661
EA+ T+ + + + +S+ R + I +M + A
Sbjct: 895 -EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK---KAHVFGITFSFTQAMMYFSYA 950
Query: 662 -TFAV----VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 716
F V + ++ A+ + + + A + + +
Sbjct: 951 AAFRFGAYLVTQQLMTFENVLLVFSAIVFG-AMAVGQVSS----FAPDYAKATVSASHII 1005
Query: 717 NYIELPSEAPLVIESNRPPPGWPSS--GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSD 772
IE E I+S P+ G+++F VV Y RP +P VL GLS +
Sbjct: 1006 RIIEKTPE----IDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQ 1060
Query: 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832
+ +VG +G GKS+++ L R + G + +DG +I + + LR LGI+ Q P+LF
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 833 GTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889
++ N+ D S ++ A + A++ I + +V + G S GQ+Q +
Sbjct: 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180
Query: 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 949
+++RAL+R+ IL+LDEAT+A+D ++ ++Q+ + + + T ++IAHRL+TI + D I+
Sbjct: 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240
Query: 950 LLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
++ +G+V E+ T ++LL+ +G + MV
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKG-IYFSMVSV 1269
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 5e-70
Identities = 143/716 (19%), Positives = 299/716 (41%), Gaps = 70/716 (9%)
Query: 373 VDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAL--------------- 417
++ + + + + K+++ + VS + RY L
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 418 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI------YSLLSFG 471
G +++L+ V + + S ++ + + Y+ + G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 472 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 531
++V + +++ ++ H+I+ + +F + +G + R D+ I+
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 532 NVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAR 584
+ + MF Q ++TF I+ W AI P+L L + S+
Sbjct: 181 GIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF- 235
Query: 585 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 644
K L + ++ A+ E L + T+ A+ + + ++++ R +
Sbjct: 236 TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRL---GIKKAIT 290
Query: 645 LAIRLEIVGGLMIWLTATFAV--------VQNGSAENQEAFASTMGLLLSYALNITSLLT 696
I + G + + A++A+ V + + +L+ A ++
Sbjct: 291 ANISM---GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG-AFSVGQASP 346
Query: 697 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRY--R 754
+ A N+ A V I+ +S P G+++F+++ Y R
Sbjct: 347 NIEAFA----NARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSR 400
Query: 755 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814
E+ +L GL+ + V +VG +G GKS+ + + R+ + G + IDG DI +
Sbjct: 401 KEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQ 873
LR+I+G++ Q PVLF+ T+ N+ E + ++ +A++ A+ D I + D
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 933
V E G S GQ+Q ++++RAL+R KIL+LDEAT+A+D ++A++Q + + + T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 934 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 993
+IAHRL+T+ + D I D G ++E +EL+ +G + K+V Q + +
Sbjct: 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG-IYFKLVM------TQTAGNEIE 632
Query: 994 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1049
G K ++E +D + S + + + S+ H+ ++L ++ +
Sbjct: 633 LGNEACKSKDEIDNLDMSSK---DSGSSLIRRRSTRKSICGPHDQDRKLSTKEALD 685
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-34
Identities = 74/373 (19%), Positives = 146/373 (39%), Gaps = 55/373 (14%)
Query: 12 LFGFVFSYIFLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV 71
F F + ++ + FG + + +T S
Sbjct: 937 TFSFTQAMMYFSYAAAF-----------------RFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 72 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNG 125
+ + + A VS + + +I + T GL +
Sbjct: 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI---DSYSTQGLKPNMLEGNVQFSGV 1036
Query: 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------D 177
F++ ++ P L ++L++ G +A+VG +G GK++++ + P++ +
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 178 ASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--- 230
+ +R + V Q +F+ ++ +NI +G YE+ + +
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS 1156
Query: 231 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDR 287
LP T +G++G +SGGQKQR+++ARA+ + + D+ SALD + V D+
Sbjct: 1157 LPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Query: 288 CIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344
G+T +++ H LS + D I+++ G VKE GT + L ++ ++
Sbjct: 1217 ARE----GRTCIVIA---HRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV 1269
Query: 345 -AGKMEEYVEEKE 356
AG YV
Sbjct: 1270 QAGAKRSYVHHHH 1282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 390 bits (1003), Expect = e-127
Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 89 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIP 146
V ++ + F L + S + FS S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 206
G L+A+ G TG GKTSL+ ++GEL P G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 207 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266
G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S+ARAVY ++D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326
++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+++HEG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 327 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN 363
TF +L N F + +++ E+ + +
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-34
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 24/278 (8%)
Query: 711 AVERVGNYIELPSEAPL--VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 768
+E V + E ++N S+ F + L PVL ++F I
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 828
+ + G TGAGK+S+L + +E G+I G I+ Q+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RIS------------FCSQNS 108
Query: 829 VLFSGTVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887
+ GT++ N + + + ++ L++ I + + + + E G S GQR
Sbjct: 109 WIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 888 LLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCD 946
+SL+RA+ + + + +LD +DV T + + + + + T +++ ++ + D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 947 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 984
+IL+L G Y T EL + FS + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFD 263
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-127
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+I++RN F+W +++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-G 60
Query: 179 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 239 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 296
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 297 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 350
TR+LVT+ + +L QVD II++ G + E G++++L F + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-36
Identities = 59/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERAHL 859
+ I G +A +PQ + + ++R N L F + ++ L
Sbjct: 62 VAIKG-SVA------------YVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACAL 106
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DAL 918
+ G ++ E G N S GQ+Q +SL+RA+ + I + D+ +AVD +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 919 IQKTI--REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+ I + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +F++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 977 VQSTGAANAQ 986
+++ + +
Sbjct: 226 LRTYASHHHH 235
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 379 bits (977), Expect = e-124
Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
Query: 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172
LT+ + + N W+ + P L +IN I G L+A+ G TG GKTSL+ ++GEL
Sbjct: 2 LTTT--EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 173 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 232
P G +++ Q SWI T+++NI+FG +++ RY I L+ D+
Sbjct: 59 EPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 233 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292
D +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+
Sbjct: 118 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 293 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342
++ KTR+LVT+++ L + D+I+++HEG GTF +L N F +
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 8e-37
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799
++ + E+V + PVL ++F I + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERA 857
G+I G I+ Q + GT++ N + F D ++
Sbjct: 63 GKIKHSG-RIS------------FCSQFSWIMPGTIKENII--FGVSYDEYRYRSVIKAC 107
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-D 916
L++ I + + + + E G S GQR +SL+RA+ + + + +LD +DV T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976
+ + + + + T +++ ++ + D+IL+L G Y T EL + + SK+
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 977 V 977
+
Sbjct: 228 M 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 292 bits (750), Expect = 3e-87
Identities = 125/570 (21%), Positives = 244/570 (42%), Gaps = 36/570 (6%)
Query: 421 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTL--- 477
+ + ++ + + + + Y D + ++ G L
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 478 ------ANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 531
Y +S + + + + F+ N +G++I+R D+
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 532 NVAVFVNMFMGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 590
+ + ++ ++ + ++L A+ Y + R++ R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRER 192
Query: 591 SITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGANRWLA 646
S + V E + G+S ++++ N + + +++T N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 647 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 706
+I ++I + A A+ +GS T+G L ++ + L + RL +
Sbjct: 253 TVTDIGPIIVIGVGAYLAI--SGS--------ITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 707 NSLNAV---ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 763
+ +RV +L E + P G I + V +Y P+L
Sbjct: 303 TLTQSFASMDRV---FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
++ +I + V VG +G GKS+++N + R ++ G+ILIDG +I F LR +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 824 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880
+ Q +LFS TV+ N+ P +D ++ EA + A+ D I G D +V E G
Sbjct: 420 VQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940
S GQ+Q LS++R L IL+LDEAT+A+D+ ++++IQ+ + K T LI+AHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
TI D+I+++++G ++E T EL++ +G
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-37
Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 49/341 (14%)
Query: 31 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 90
+ + + P++V G + + G +T + +L PL L T + +
Sbjct: 251 INTVTDIGPIIVIG--VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLP----AISIRNGYFSWDSKAERPTLLNINLDIP 146
S+ R+ + + +E + N + I I + F ++ E P L +INL I
Sbjct: 309 ASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIE 365
Query: 147 VGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVI-------------RGTVAYV 189
G VA VG +G GK++LI+ L P V+ +I R + V
Sbjct: 366 KGETVAFVGMSGGGKSTLIN-----LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 190 PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNI 246
Q + +F+ TV++NIL G A E+ ++ + + D LP G TE+GERGV +
Sbjct: 421 QQDNILFSDTVKENILLGR--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Query: 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTN 303
SGGQKQR+S+AR +N + I D+ SALD + D + +T ++V
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTTLIVA- 533
Query: 304 QLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
H LS + D+I+++ G + E GT +L ++ L
Sbjct: 534 --HRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 289 bits (743), Expect = 4e-86
Identities = 138/597 (23%), Positives = 255/597 (42%), Gaps = 50/597 (8%)
Query: 396 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 454
E+ +FK L Y + GL V I L+ +T +S L D+
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMIS---LLKPLLDEGFGN 58
Query: 455 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 512
+ + L F + L A+SY L S ++ + + + P+ FF
Sbjct: 59 AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 513 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 568
G +++R D ++ + V + S L+ ++ S L I+
Sbjct: 119 ESTGGLLSRI---TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
Query: 569 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 618
++ +A KR I+R V + + L G + +Y
Sbjct: 176 PVVAFAISFV-------SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERK 228
Query: 619 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 678
R ++ + ++ A+ + + + +++L A+ ++
Sbjct: 229 RFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL-ASVDSIRA---------E 278
Query: 679 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 735
T G + L+ + L S+ + A + + ++L +E
Sbjct: 279 LTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEA 335
Query: 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795
+G + +DV Y+ + P L +SF+IP V +VGR+G+GKS++ N R
Sbjct: 336 E--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 853
+++ G I +DG D+ + L +LR+ ++ Q+ LF+ T+ N E++ + +A
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQA 453
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
+AH + I GLD + E G + S GQRQ ++++RALLR + +L+LDEAT+A+D
Sbjct: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
Query: 914 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
++ IQ + E K+ T+L+IAHRL+TI D IL++D G ++E +LL+ +G
Sbjct: 514 ESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-39
Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 45/336 (13%)
Query: 34 ILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSL 93
++ S+ L V+ + +LTP S L PL L ++ ++ +
Sbjct: 257 MIASL-ALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315
Query: 94 KRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 153
+ + + E + + +++ F++ K E+P L +++ IP G VA+
Sbjct: 316 QTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVAL 374
Query: 154 VGGTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQVSWIFN 197
VG +G GK+++ + L V D +R A V Q +FN
Sbjct: 375 VGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 198 ATVRDNILFGSAFEPARYE-----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 251
T+ +NI + + E R + + + ++ +P G T IGE G ++SGGQ+
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHA----MEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFL 308
QRV++ARA+ ++ V I D+ SALD R + D + KT +++ H L
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK----NKTVLVIA---HRL 539
Query: 309 SQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
S + D I++V EG + E G DL + +L
Sbjct: 540 STIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 7e-86
Identities = 134/597 (22%), Positives = 257/597 (43%), Gaps = 50/597 (8%)
Query: 396 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 454
++ + +F+ L GL V I L+ ++T +S L D K
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLS---LLKPLLDDGFGK 58
Query: 455 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 512
T + + L + + + +SY + S + + ++ P+ FF
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 513 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 568
G +++R D ++ + + V + S L ++ S + ++
Sbjct: 119 QSTGTLLSRI---TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 569 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 618
++ A + KR SI++ V + L G + +
Sbjct: 176 PIVSIAIRVVS-------KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 619 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 678
R ++ K + ++ + ++ + + + +++ A+F V + +
Sbjct: 229 RFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMD---------S 278
Query: 679 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 735
T G + ++ +L+ + L ++ + A + + ++ E E R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVI 335
Query: 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R
Sbjct: 336 D--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 853
+++ G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
A+ D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 914 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
++ IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 8e-40
Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 37/332 (11%)
Query: 34 ILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSL 93
++ S+ L V+ F + LT S L PL L N+ Q +
Sbjct: 257 LIASL-ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315
Query: 94 KRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 153
+ + L +E++ + + RN F++ + E P L NINL IP G VA+
Sbjct: 316 QTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVAL 374
Query: 154 VGGTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQVSWIFN 197
VG +G GK+++ S L + + + + A +R VA V Q +FN
Sbjct: 375 VGRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 198 ATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255
TV +NI + + + E+A + ++ + G T IGE GV +SGGQ+QR++
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490
Query: 256 MARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV- 311
+ARA+ +S + I D+ SALD R + D + +T +++ H LS +
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIA---HRLSTIE 543
Query: 312 --DRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
D I++V +G++ E GT +L ++ +L
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 8e-75
Identities = 129/527 (24%), Positives = 233/527 (44%), Gaps = 55/527 (10%)
Query: 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 526
+++ + + + + +S L + +L + + +I R D+
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 130
Query: 527 GDIDRNVAVFVNMFMGQVSQLLSTFVLIG-------IVSTMSL--WAIMPLL-----LLF 572
+ V M + V + + + +G I +S ++P + L
Sbjct: 131 ----TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 632
++ ++ + R E L G +R +A+ R N N
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVR--------ENLLG---VRVVRAFRREEYENENFRKANE 233
Query: 633 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL-----LLSY 687
+ A + L + + I AV+ G + M + +Y
Sbjct: 234 SLRRSIISAFSLIVFALPLF--IFIVNMGMIAVLWFGG---VLVRNNQMEIGSIMAYTNY 288
Query: 688 ALNIT---SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 744
+ I ++ +L A S +RV E+ +E P + E++ GS+
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASA---KRVL---EVLNEKPAIEEADNALALPNVEGSV 342
Query: 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804
FE+V RY PVL G++F++ P V ++G TG+GKS+++N + R+++ ERGR+ +
Sbjct: 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 805 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKD 861
D D+ L DLR + +PQ VLFSGT++ NL + +D ++ EA + A + D
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHD 460
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
I G D++V G NFS GQ+Q LS++RAL+++ K+L+LD+ T++VD T+ I
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968
++ K CT II ++ T + D+IL+L G+V + T +ELL +
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 3e-40
Identities = 84/361 (23%), Positives = 166/361 (45%), Gaps = 46/361 (12%)
Query: 1 MNTFVYLGTIGLFGFVFSYIFLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPA 60
+ + ++ F I+++ ++ V+ FG + +
Sbjct: 236 RRSIISAFSL--IVFALPLFIFIVNM-------------GMIAVLWFGGVLVRNNQMEIG 280
Query: 61 R--AFTS---LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTS 115
A+T+ +F+++ M+ N++ +V A+ S KR+ E L + I + L
Sbjct: 281 SIMAYTNYLMQIMFSLM-----MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALAL 335
Query: 116 GL--PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------- 166
++S N F + + P L +N + GSLVA++G TG GK++L++
Sbjct: 336 PNVEGSVSFENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394
Query: 167 AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221
G + V +RG ++ VPQ + +F+ T+++N+ +G E A ++ ++
Sbjct: 395 PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEA 452
Query: 222 TSL-QHD--LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278
+ Q + LP G + + G N SGGQKQR+S+ARA+ V I DD S++D
Sbjct: 453 AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512
Query: 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338
+++ ++ G T ++T ++ D+I+++HEG V GT ++L + + +
Sbjct: 513 ITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
Query: 339 Q 339
+
Sbjct: 572 R 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 3e-74
Identities = 149/591 (25%), Positives = 258/591 (43%), Gaps = 65/591 (10%)
Query: 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 466
L + + ++++ + ++ L V S + D + L +
Sbjct: 29 LGYLRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 467 LLSF--GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 524
L + L+ ++ S RL + + R P+ FF P G II+R
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV-- 140
Query: 525 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM-------SLWAIMPLLLLFYAAYL 577
+ D+D N+ + + Q L G V M SL + + L +
Sbjct: 141 -INDVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 578 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGK---SMDK 630
T + + E ++GL+ I+ + K ++ +N K
Sbjct: 197 VSSQTRKYFYEN-QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255
Query: 631 NIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL- 684
++ L+NM N A+ + GG + T+G +
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFAL-ISGFGGWL---------ALKDII--------TVGTIA 297
Query: 685 --LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 742
+ Y+ T L + ++ + +L + ER+ ++L E + + G
Sbjct: 298 TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVELR-EVRG 353
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R +++RG+I
Sbjct: 354 EIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHL 859
L+DG DI K LR +GI+ Q +LFS TV+ NL +P +D ++ EA + H
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHS 470
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
I+ G + +++ GE+ S GQRQLL+++RA L KIL+LDEAT+ VD +T+ I
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
Q + + + T +IIAHRLNTI + D I++L G ++E +EL+ G
Sbjct: 531 QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 47/335 (14%)
Query: 25 SLILQCNSFILNSIPVLVTVVSFGMFTLLG----GDLTPARAFTSLS-LFAVLRFPLFML 79
++ + + N L++ G L G + F S F PL L
Sbjct: 261 GVLPPLMNMVNNLGFALISGFG-GWLALKDIITVGTIA---TFIGYSRQFT---RPLNEL 313
Query: 80 PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTL 138
N + A S +R+ E L EE+ P+ + I +N +FS+D ++P L
Sbjct: 314 SNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYD--KKKPVL 371
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GELP----PVSDAS-AVIRGTV 186
+I I G VA+VG TG GKT++++ ++ G++ + + +R ++
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431
Query: 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD----LLPGGDVTEIGER 242
V Q + +F+ TV++N+ +G+ A E+ + L H D LP G T + +
Sbjct: 432 GIVLQDTILFSTTVKENLKYGN--PGATDEEIKEAAKLTH-SDHFIKHLPEGYETVLTDN 488
Query: 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRV 299
G ++S GQ+Q +++ RA +N + I D+ S +D + + + + GKT +
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL----MEGKTSI 544
Query: 300 LVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 331
++ H L+ + D II++ +G + E G ++L
Sbjct: 545 IIA---HRLNTIKNADLIIVLRDGEIVEMGKHDEL 576
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 4e-73
Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 767
+E + +L E V + P G I+FE+V Y L +SFT
Sbjct: 21 MFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFT 76
Query: 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 827
+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++PQ
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 828 PVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884
VLF+ T+ N+ + ++ A + A + DAI G QV E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944
++Q ++++R +L+ I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 945 CDRILLLDSGRVLEYDTPEELLSNEG 970
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-38
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 75 PLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRNGYFSWDSK 132
++ + + + ++ M + L E ++ LP PL I N +FS+
Sbjct: 7 HHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD- 65
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 182
R TL +++ + G +A+VG +G GK++++ +L +S I
Sbjct: 66 -GRETLQDVSFTVMPGQTLALVGPSGAGKSTILR-LLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 183 ---RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
R + VPQ + +FN T+ DNI +G +A E A + + P G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297
++GERG+ +SGG+KQRV++AR + + + D+ SALD R + + + +T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRT 241
Query: 298 RVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 341
++V H LS V D+I+++ +G + E G E L + G ++ +
Sbjct: 242 TIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 233 bits (598), Expect = 3e-70
Identities = 82/240 (34%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 858
+LIDG D+A LR+ +G++ Q VL + ++ N+ +P S + A + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
D I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978
I + + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I+ RN F + + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 177 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 225
D + +R V V Q + + N ++ DNI + EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAG 123
Query: 226 -HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 284 V---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 331
+ + + G+T +++ H LS V DRII++ +G + E+G ++L
Sbjct: 184 IMRNMHKICK----GRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 1e-68
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL----DPFSEHSDADLWEALERAHL 859
IDG I L + R +G + Q + +GT+R NL + +++D DLW+ L+ A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFA 118
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
+ + L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 920 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 970
QK + K T L+IAHRL+TI+D D+I ++ G++ EL++
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 137 bits (349), Expect = 1e-36
Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 172
+S R+ F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 173 ----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSLQ 225
P+ + S R + +V Q S I T+R+N+ +G + + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 284
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 285 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 339
D ++ G+T +++ H LS + D+I + +G + G +L L+
Sbjct: 180 KALDSLMK----GRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232
Query: 340 KL 341
K
Sbjct: 233 KY 234
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 5e-68
Identities = 81/241 (33%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 742 GSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERA 857
I I G ++ K+ +R I+GI+PQ +LF+ T+++N+ + +D ++ +A + A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSA 132
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
L D I D V G S G+RQ ++++R LL+ KI++ DEAT+++D +T+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977
L QK + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMW 251
Query: 978 Q 978
Sbjct: 252 N 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GE- 171
I + FS+ + TL +IN IP G+ A+VG TG GK+++ + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 172 ------LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225
+ + S IR + VPQ + +FN T++ NIL+G A E+ I T
Sbjct: 77 KIGGKNVNKYNRNS--IRSIIGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSA 132
Query: 226 HDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 282
D LP T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 283 QVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 339
+ + +T +++ H LS + + IIL+++G + E+GT +DL +
Sbjct: 193 LF-QKAVEDLRKNRTLIIIA---HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 340 KL 341
++
Sbjct: 249 EM 250
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 2e-56
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 741 SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 798
G +KF+DV Y P + VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 799 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALER 856
G++L+DG + ++ L + + Q P+LF + R N+ + ++
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
+ D I G D +V E G S GQRQ ++L+RAL+R+ ++L+LD AT+A+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 917 ALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG-CYR 251
Query: 975 KMVQ 978
MV+
Sbjct: 252 SMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 112 PLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 165
PL+ L + ++ F++ + L + + G + A+VG G GK+++
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 166 SAML-------GEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 213
+ + G++ P+ + VA V Q +F + R+NI +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTP 121
Query: 214 RYEKAIDVTSLQ--HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
E+ V HD + P G TE+GE G +SGGQ+Q V++ARA+ + I D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 271 DPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKE 324
+ SALDA +V E + +T +L+T LS I+ + EG V E
Sbjct: 182 NATSALDAGNQLRVQRLLYESP--EWASRTVLLIT---QQLSLAERAHHILFLKEGSVCE 236
Query: 325 EGTFEDLSNNGELFQKLME 343
+GT L G ++ ++E
Sbjct: 237 QGTHLQLMERGGCYRSMVE 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-32
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ + + + + +L +S+ I DK + G GAGK+++LN L G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 804 IDGFDIAKFG--LMDLRKILGIIPQS---PVLFSGTVR--------FNLDPFSEHSDADL 850
+ G K G +R+ +G + S V ++ + + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 851 WEA---LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
EA L+ + ++ L S G++Q + ++RAL+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 908 TAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963
A +D + + + + M+ + H + I +ILLL G+ ++ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 964 ELLSNE 969
++L++E
Sbjct: 249 DILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 35/240 (14%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
I + + L I+ I G + G G GKT+L++ + P S
Sbjct: 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 178 ASAV--------------IRGTVAYVPQ---VSWIFNATVRDNILFGSAFEPARYEKAID 220
+ +R + +V + V D ++ G+ Y+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--- 133
Query: 221 VTSLQHD-----LDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLS 274
+ + L L+ ++ ++ + +S G+KQRV +ARA+ V I D+P +
Sbjct: 134 IDDEIRNEAHQLLKLV---GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 275 ALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331
LD + + + VT+ + ++ +I+L+ +G ++G ED+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
A+S+ N F + ++ +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ- 59
Query: 178 ASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLL 231
+ ++ +VPQ S F +V D +L G + F K+ D LD L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL 116
Query: 232 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290
++T + +R +SGGQ+Q + +ARA+ S + + D+P SALD V +
Sbjct: 117 ---NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LL 171
Query: 291 GELS---GKTRVLVTNQLHFLSQV----DRIILVHEGMV 322
+L+ T V T H +QV ++ +L+++
Sbjct: 172 IDLAQSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 51/242 (21%), Positives = 117/242 (48%), Gaps = 41/242 (16%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 803 LIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTV-------RF-NLDPFSEHSDADL--- 850
++ + +G +PQ F+ +V R +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910
+AL+ +L +R + + S GQRQL+ ++RA+ K+++LDE T+A
Sbjct: 110 MQALDYLNLTHLAKR-------EFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 911 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+D+ ++ + + + ++ T++ H+ N ++ ++ LLL+ + ++ +L+
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILT 217
Query: 968 NE 969
+E
Sbjct: 218 SE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELER 799
+K E++ Y + L G++ I + I+G G GKS TLF+ I++
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKS----TLFQNFNGILKPSS 62
Query: 800 GRILIDGFDIA--KFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHSDA 848
GRIL D I + G+M LR+ +GI+ Q P LFS +V F N+ E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPED--- 118
Query: 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
E +R +A++R G++ + S GQ++ ++++ L+ K+L+LDE T
Sbjct: 119 ---EIRKRV--DNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 909 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
A +D + I K + E + T++I H ++ + CD + ++ GRV+ P+E+
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 966 LSNE 969
+ +
Sbjct: 232 FAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 60/283 (21%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 176
+ + +++ L IN++I G + AI+GG G GK++L G L P S
Sbjct: 6 YILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 177 -------------DASAVIRGTVAYV---P--QVSWIFNATVRDNILFG------SAFE- 211
+R ++ V P Q +F+A+V ++ FG E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEI 120
Query: 212 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
R + A+ T ++H D +S GQK+RV++A + V I D+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 272 PLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT- 327
P + LD ++ ++ E G T ++ T+ + + D + ++ EG V +G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 328 ---FED---LSNNG-------ELFQKLMENAGKMEEYVEEKED 357
F + + L + L E G + + ++E
Sbjct: 229 KEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 743 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IV 795
I+ +V + P L +S I + + + G TG+GKS TL + ++
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKS----TLLQIVAGLI 57
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHS 846
E G +L DG ++R+ +GI Q P F+ V F N P
Sbjct: 58 EPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-DR-- 111
Query: 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
+ + K A+ L D+ S G+++ ++++ ++ IL+LDE
Sbjct: 112 -----DPVPLV--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 907 ATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964
+D + + + + + T+++I+H + T+I+ DR+++L+ G+ + T E
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 965 LLSN 968
L
Sbjct: 225 FLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 43/246 (17%)
Query: 119 AISIRNGYFSWD--SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176
I + N + + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 177 DASAV---------IRGTVAYV---P--QVSWIFNATVRDNILFG------SAFEPARYE 216
IR + P Q F V D + F +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 217 KAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
KA++ L D +R +SGG+K+RV++A + D+ I D+PL
Sbjct: 119 KAMEFVGL----------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 276 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 331
LD + + + GKT +L++ H + V DR++++ +G +GT +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 332 SNNGEL 337
+
Sbjct: 226 LEKYDP 231
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 28/256 (10%)
Query: 729 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS--- 785
+ S++ G++ +D+ R + +L G+SF I + G++G GAGK+
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 786 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE 844
+++TL + G + + G ++ + ++RK++ +P+ + L
Sbjct: 59 RIISTLIKPSS---GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV-- 112
Query: 845 HSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902
A + A + +++ + R GL ++ + +S G + L ++RAL+ ++
Sbjct: 113 ---AGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 903 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-----CDRILLLDSGRV 956
+LDE T+ +DV ++K +++ + T+L+ +H + CDRI L+ +G +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTI 224
Query: 957 LEYDTPEELLSNEGSS 972
+E T EEL +
Sbjct: 225 VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 6e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 188
I+ +I G + ++G G GKT+ + + + P V + +R ++Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 189 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+P+ + + N + + F S+ E+A ++ L +
Sbjct: 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------- 145
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 298
S G +++ +ARA+ N + I D+P S LD R+V + E G T
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLT- 198
Query: 299 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEY 351
+LV++ H + +V DRI L+H G + E GT E+L + + E E +
Sbjct: 199 ILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ D+ + Y VL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-----HSDADLWEALERA 857
+G I K ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 68 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
+ D + LG S G + + L+ LL ++I VLD+ A+D +
Sbjct: 123 EVLD--LKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 918 LIQKTIREEFKSCTMLIIA--HRLNTIIDCDRILLLDSGRVL 957
+ K+I E K ++II+ L+ CD L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 3e-18
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 31/222 (13%)
Query: 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177
+ IR+ +D L I + I G++V G G GKT+L+ + L P+
Sbjct: 9 SKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 178 ASAV-------IRGTVAYVPQVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSL 224
++G + ++P+ + +V D + G A++ +
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
++G +S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 125 LDLKK--------KLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 285 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326
+ ++ + LS D +H+ K +
Sbjct: 173 LKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
L LS + + + +VG GAGKS++L + + +G I G + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLA 72
Query: 819 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDADL-WEALERAHLKDAIRRNSLGLDA 872
+ Q F+ V + + +L + L D + R++ L
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 873 QVSEAGENFSVGQRQLLSLSRALL-------RRSKILVLDEATAAVDVR----TDALIQK 921
S G+ Q + L+ +L ++L+LDE ++DV D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 922 TIREEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 969
++ +++ +H LN T+ R LL G++L EE+L+
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 37/219 (16%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAVI 182
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 183 RG-TVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
AY+ Q F V + +++K L L + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLH------QHDKT-RTELLNDVAGAL---ALDDKL 120
Query: 241 ERGVN-ISGGQKQRVSMARA-------VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292
R N +SGG+ QRV +A + + D+P+++LD +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 293 LSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 327
G V+ H L+ R L+ G + G
Sbjct: 181 QQGLAIVMS---SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----- 173
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 174 -----PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 228
V IR +P+ ++ TV D + + + +++ L
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---L 115
Query: 229 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287
L EI R + +S GQ V + A+ S ++ D+P +DA R V R
Sbjct: 116 KLGE-----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHVISR 169
Query: 288 CIRGELSGKTRVLVT-NQLHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 334
I+ E GK +LVT + ++ + +L +
Sbjct: 170 YIK-EY-GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 744 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
I+ ++V + + L ++ + +KV I+G G+GK+++L + ++ G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG--TVRFNLDPFSE---HSDADLWEALER 856
I I+G ++ K +R + P + TV + + E E L+
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916
L + I L ++ + S GQ L+ S AL + +I+ LDE VD
Sbjct: 115 LKLGEEI------LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 917 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEELLSNE 969
+I + I+E K +++ H L+ + + G L+ + ELL +
Sbjct: 165 HVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRT 780
+ IK ++ + + L+ +S +P G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 781 GAGKSSMLNTLFRIV-ELER---GRILIDGFDIAKF---GLMDLRKILGIIPQSPVLFSG 833
GAGKS TL R V LER G +L+DG ++ L R+ +G+I Q L S
Sbjct: 64 GAGKS----TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 834 -TVRFNLDPFSEHSDADLWEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQ 885
TV N+ LE + KD ++R L GL + N S GQ
Sbjct: 120 RTVFGNVA-----------LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNT 941
+Q ++++RAL K+L+ D+AT+A+D T L++ I T+L+I H ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEMDV 226
Query: 942 IID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
+ CD + ++ +G ++E DT E+ S+ + ++
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 41/251 (16%)
Query: 109 PNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISA 167
I + N + L N++L +P G + ++G +G GK++LI
Sbjct: 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR- 72
Query: 168 MLGELPPVSDASAVIRGT----------VAYVPQVSWIF-------NATVRDNILFGSAF 210
+ L ++ S ++ G Q+ IF + TV N+
Sbjct: 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PL 130
Query: 211 EPARYEKA-ID--VTSLQHDLDLLPGGDVTEIGERG----VNISGGQKQRVSMARAVYSN 263
E K + VT L L L+ +G++ N+SGGQKQRV++ARA+ SN
Sbjct: 131 ELDNTPKDEVKRRVTEL---LSLV------GLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 264 SDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEG 320
V + D SALD R + + + I L G T +L+T+++ + ++ D + ++ G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNG 240
Query: 321 MVKEEGTFEDL 331
+ E+ T ++
Sbjct: 241 ELIEQDTVSEV 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 108 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 167
L + + S L +I G ++ IVG G GKT+ +
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 168 MLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226
+ G P TVAY PQ + + TV + L T L
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELLK 457
Query: 227 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
L + ++ +R V ++SGG+ QRV++A + ++D+++ D+P + LD V
Sbjct: 458 PLGI------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 286 DRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342
R IR E + KT ++V + + + V DR+I V EG G E + +
Sbjct: 512 -RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMGMREGMNRFL 569
Query: 343 ENAG 346
+ G
Sbjct: 570 ASVG 573
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-------FRIVELER 799
ED V RY VL+ + VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS- 151
Query: 800 GRILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDAD 849
+I F + ++ + + P G VR L E +
Sbjct: 152 WDNVIRAFRGNEL-QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909
E ++ L++ LD ++ + S G+ Q ++++ ALLR++ DE ++
Sbjct: 211 --EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 910 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID--CDRILLL 951
+D+R + + IR + +L++ H L ++D D I ++
Sbjct: 258 YLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 7e-19
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 32/217 (14%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
L I + +GIVG G GK++ + L + E G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------T 418
Query: 820 ILGIIPQSPVLFSGTVR---FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 876
+ + GTV +D +S+ E L+ + D RN V +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-------VED 471
Query: 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 934
S G+ Q ++++ LLR + I +LDE +A +DV + + IR E T L+
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 935 IAHRLNTIID--CDRILLLDSGRVLEYDTPEELLSNE 969
+ H + +ID DR+++ + G + +
Sbjct: 528 VEHDV-LMIDYVSDRLIVFE-GEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-15
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 51/255 (20%)
Query: 118 PAISIRNGYFSWD-----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172
AISI N D +L + G +V IVG G GKT+ + + G+L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 173 PP-----------------VSDASAVIR----GTVAYVPQ---VSWIFNATV-RDNILFG 207
P ++ G + V + V + A + L
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267
E ++E+ + L++ LD +SGG+ QRV++A A+ + +
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVH-----E 319
FD+P S LD +V R IR L GK ++V + L L + D I +V+
Sbjct: 251 FFDEPSSYLDIRQRLKV-ARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 320 GMVKEEGTFEDLSNN 334
G+ + + N
Sbjct: 309 GIFSKPKGTRNGINE 323
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 32/256 (12%)
Query: 721 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 780
+EA ++ S S F L+ VL+ S+ + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 781 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFN 838
G GK++++ L ++ + G+ + +++ + + V LF +R
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR-- 439
Query: 839 LDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897
+ + + ++ + D I + V S G+ Q +++ AL
Sbjct: 440 ----GQFLNPQFQTDVVKPLRIDDIIDQE-------VQH----LSGGELQRVAIVLALGI 484
Query: 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSG 954
+ I ++DE +A +D + K IR T I+ H D++++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 955 RVLE--YDTPEELLSN 968
PE LL+
Sbjct: 545 PSKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 33/280 (11%)
Query: 83 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA---------ISIRNGYFSWDSKA 133
+T + + + + E + L + S Y S
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-V 192
L + ++ ++G G GKT+LI + G L P + + + V+ PQ +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKI 422
Query: 193 SWIFNATVRDNI---LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249
+ F TVR + G P + + +D ++SGG
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGG 471
Query: 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLH 306
+ QRV++ A+ +D+++ D+P + LD+ R I + KT +V +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFI 529
Query: 307 FLSQV-DRIILVHEGMVKE--EGTFEDLSNNGELFQKLME 343
+ + D++I+ K E L F K +
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-19
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI---- 802
V RY LH L T P +G+VG G GKS+ L L + GR
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 803 -------LIDGFDIAKFGLMDLRKILGIIPQSPVLF------SGTVRF---NLDPFSEHS 846
G ++ + L + I + + G V+ L E S
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
D+ ++ L++ ++R+ + + S G+ Q ++ + ++ + + + DE
Sbjct: 199 PEDVKRYIKILQLENVLKRD-------IEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 907 ATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962
++ +DV+ + IR K ++ + H L+ + D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTK--YVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 963 EELLSNEG 970
EG
Sbjct: 306 LPASVREG 313
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 8e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 174
LP + + + + + L+ G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 175 --------VSDASAVIRGT---------------VAYVPQVSWIFNATVRDNILF-GSAF 210
+ RG+ PQ ++ + G
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIF 269
+ + DV L L + +R + +SGG+ QR ++ + +DV++F
Sbjct: 192 KLRMEKSPEDVKRYIKILQL------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 270 DDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326
D+P S LD + IR L K + V + L L + D + +++
Sbjct: 246 DEPSSYLDVKQRLNAA-QIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 327 TFEDLS 332
S
Sbjct: 304 VTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 100 LLAEEKILLPNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 153
L +E + + Y L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 154 VGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEP 212
VG G GKT+ + + G P ++ TVAY PQ + + TV + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 213 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDD 271
+ T L L + ++ +R V +SGG+ QRV++A + ++D+++ D+
Sbjct: 375 -KLNSNFYKTELLKPLGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 272 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 328
P + LD V R IR E + KT ++V + + + V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRA 485
Query: 329 EDLSNNGELFQKLMENAG 346
E + + + G
Sbjct: 486 LPPMGMREGMNRFLASIG 503
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 36/224 (16%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV------ELERG 800
ED V RY VL+ L + VGIVG G GKS+ + L + + +
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 801 RILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDADL 850
+I F + K+ + + P G V L E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE- 140
Query: 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910
E ++ L++ + R + S G+ Q ++++ ALLR + DE ++
Sbjct: 141 -EVVKALELENVLERE-------IQH----LSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 911 VDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLL 951
+D+R + IR ++L++ H L + D I ++
Sbjct: 189 LDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 4e-19
Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)
Query: 724 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 783
+ + + +V Y L I + +GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 784 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR---FNLD 840
K++ + L + E G+I D + + GTV +D
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID 372
Query: 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900
+S+ E L+ + D R S G+ Q ++++ LLR +
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 901 ILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID--CDRILLLDSGRV 956
I +LDE +A +DV + + IR E T L++ H + +ID DR+++ + G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFE-GEP 479
Query: 957 LEYDTPEELLS 967
+Y +
Sbjct: 480 GKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVIR---------- 183
L + G +V IVG G GK++ + + G+L P VIR
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 184 ------GTVAYVPQ------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 231
G + V + + V + + A E + E+ + L++ L+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLE-- 153
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
EI +SGG+ QRV++A A+ N+ + FD+P S LD IR
Sbjct: 154 -----REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIR- 202
Query: 292 EL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 328
L GK+ ++V + L L + D I +V+ G G F
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-21
Identities = 59/312 (18%), Positives = 123/312 (39%), Gaps = 34/312 (10%)
Query: 83 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS---------IRNGYFSWDSKA 133
+++ A V + + L E + + + L +S + + K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193
L+ N + G ++ I+G G GKT+ ++GE+ + + ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 194 WI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQK 251
+ ++ TV+ +A + A + + L+L + E V ++SGG+
Sbjct: 340 FPNYDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGEL 391
Query: 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLS 309
Q++ +A + +D+++ D P S LD R + + I+ ++ + L
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEE-RYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 310 QV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKP 368
+ DRII V +G ++ G ++ M E++ E E D +T +P
Sbjct: 451 YIADRII-VFKGEPEKAGLATS--------PVTLKTG--MNEFLRELEVTFRRDAETGRP 499
Query: 369 AANGVDNDLPKE 380
N + + L +
Sbjct: 500 RVNKIGSYLDRV 511
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-21
Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 722 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 781
++ E + +K+ ++ + L + + +GI+G G
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNG 304
Query: 782 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D 840
GK++ L + + G + + ++ ++I + GTV+ L +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS----YKPQRIF-------PNYDGTVQQYLEN 353
Query: 841 PFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897
+ W E +R +L + N V++ S G+ Q L ++ L +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN-------VND----LSGGELQKLYIAATLAK 402
Query: 898 RSKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIID--CDRILLLD 952
+ + VLD+ ++ +DV ++ K I+ E K II H L+ I D DRI++
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLS-IHDYIADRIIVFK 460
Query: 953 SGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 991
G + + ++LR L
Sbjct: 461 -GEPEKAGLATS------------PVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)
Query: 747 EDVVLRYRPELPPVLHGLSFTIP-PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805
+V+ RY+ P + +G++G+ G GK+++L L G I+ +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 806 --GFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVR-----FNLDPFSEHSDADLWEAL 854
+ L++ + + +S ++ ++ S+ + E L
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 855 ERAHLKDAIRR--NSLGL----DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
+ + L + + + S G Q L ++ +LLR + + + D+ +
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 909 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967
+ +DVR + K IRE K+ ++++ H L + D I ++ + + +
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 968 NEG 970
G
Sbjct: 227 RVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 9e-16
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 140 NINLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP----------VSDASAVIRGT-VA 187
L P +++ ++G G GKT+++ + GE+ P + RG +
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 188 YVPQ---------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
+ V I L G+ K + +LL ++T
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELL---NMTN 130
Query: 239 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297
+ + +SGG QR+ +A ++ +DV+IFD P S LD + IR L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 298 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 332
++V + L L + D I +++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN---KEPAEL 79
Query: 821 --LGIIP--QSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKD--AIRRNS----- 867
GI+ Q+P TV N L ++ L + + + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 868 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 923
L L S GQ +L+ + RAL+ K++V+DE A V + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 924 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+ + T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 200 KAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.0 bits (209), Expect = 3e-18
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN---KPAHV 77
Query: 820 I--LGIIPQSP---VLFSG-TVRFNLD--PFSEHSDADLWEALERAH-----LKDAIRRN 866
I +GI P +F TV NL ++ + LE LK+ R
Sbjct: 78 INRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLK 134
Query: 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---AAVDVRTDALIQKTI 923
L G S G++Q+L++ RAL+ R K+L++DE + A + V + + I
Sbjct: 135 QL--------GG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 924 REEFKSCTMLII---AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969
+E T+L++ A + +L++G+++ ELL NE
Sbjct: 186 NQE--GTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRG 184
+ I+L +P G +V ++G G GKT+ +SA+ G + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 185 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER- 242
+A VP+ IF TV +N++ G+ + D L+ L P + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFP-----RLKERL 133
Query: 243 ---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 297
G +SGG++Q +++ RA+ S + + D+P L + +VF+ + I E G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTT 191
Query: 298 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 140 NINLDIPVGS-LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 193
+N+D +G ++G TG GK+ + ++ + + G + +P +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLE-LIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 194 WIF-------NATVRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
++ + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------G 295
+SGG++QRV++ARA+ + + D+PLSA+D + EL
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-----MEELRFVQREFD 177
Query: 296 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ VT + + D + ++ G + E+G ++L
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 774 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-- 831
++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 832 ---SGTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887
+ + L D + E E+ + + R A++S G G+RQ
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP----ARLS--G-----GERQ 133
Query: 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS------CTMLIIAHRLNT 941
++L+RAL+ + ++L+LDE +AV D + + EE + +L + H
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAV----DLKTKGVLMEELRFVQREFDVPILHVTH---- 185
Query: 942 IID-------CDRILLLDSGRVLEYDTPEEL 965
D D + ++ +GR++E +EL
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 2e-15
Identities = 75/495 (15%), Positives = 136/495 (27%), Gaps = 144/495 (29%)
Query: 689 LNITSLLTAVLRL-ASLAENSLNAVER-VG-----NYIELPSEAPLVIESNRPPPGWPSS 741
+ ++ LRL +L V++ V NY ++ + PS
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSM 107
Query: 742 GSIKFEDVVLR-------------YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 788
+ + + R R + L + P+ V I G G+GK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 789 NTLFRIVELERGRILIDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP-FSEH 845
+ +++ F I + + + + Q L + +DP ++
Sbjct: 168 LDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK--LL-----YQIDPNWTSR 216
Query: 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905
SD L ++ +RR LL +LVL
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------LLKSKP--YENC-LLVLL 251
Query: 906 EATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID------CDRILLLDSGRVLE 958
+V+ F SC +L+ R + D I L L
Sbjct: 252 ------NVQN-----AKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 959 YDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQI---------- 1008
D + LL +YL L E
Sbjct: 300 PDEVKSLL------------------LKYL------DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1009 ---DGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKK----TKDAVVTL 1061
DG W W L + SS L LE + + + A +
Sbjct: 336 SIRDGLATW---DNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 1062 QGVLE----GKHDKEIEESLNQ-HEVS-TDGWWSALYRMIEGLSVMSRLARN---RLHQS 1112
+L ++ +N+ H+ S + I + + ++ LH+S
Sbjct: 390 I-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1113 --DYDLEERSIDWDH 1125
D+ ++ D D
Sbjct: 449 IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 5e-13
Identities = 75/517 (14%), Positives = 146/517 (28%), Gaps = 168/517 (32%)
Query: 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVP-Q 191
R LL + V I G G GKT + A V + +
Sbjct: 141 RQALLELR----PAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFK 183
Query: 192 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251
+ W+ N + P + + Q D + D + + ++ +
Sbjct: 184 IFWL-N--------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 252 QRVSMARAVYSNSDVFIFDD--PLSALDAHVGRQVFD-RCIRGELSGKTRVLVTNQLHFL 308
+R+ + Y N + + + A +A F+ C ++L+T + F
Sbjct: 235 RRL-LKSKPYENC-LLVLLNVQNAKAWNA------FNLSC---------KILLTTR--FK 275
Query: 309 SQVDRI---ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKT 365
D + H + T L K Y++ +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----------YLDCRPQ-------- 316
Query: 366 SKPAANGVDNDLPKEASDT---------RKTKEGKSVL-----IKQEERETGV-VSFKVL 410
DLP+E T ++G + + ++ T + S VL
Sbjct: 317 ----------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 411 S------RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD--------------- 449
+ + + + W D
Sbjct: 367 EPAEYRKMFDR-------------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 450 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL---IISSLYAAKRLHDAMLHSILRAP 506
S ++ +I S+ ++ V L N Y L I+ Y + D ++
Sbjct: 414 YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPY 468
Query: 507 M---VFFHTNPLGR-IINRFAKDLGDIDRNVAVFVNM-FMGQVSQLLSTFVLIGIVSTMS 561
+ + H +G + N + + R VF++ F+ Q I +
Sbjct: 469 LDQYFYSH---IGHHLKNIEHPERMTLFRM--VFLDFRFLEQ-----------KIRHDST 512
Query: 562 LW----AIMPLL--LLFYAAYLYYQSTAREVKRLDSI 592
W +I+ L L FY Y+ E + +++I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 4e-06
Identities = 62/376 (16%), Positives = 111/376 (29%), Gaps = 117/376 (31%)
Query: 26 LILQ--CNSFILNSI----PVLVTVVSFGMFTLLGGDLT-------PARAFT---SLSLF 69
L+L N+ N+ +L+T + L T + T SL
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 70 A-VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFS 128
L LP +V+ N P + A SIR+G +
Sbjct: 308 LKYLDCRPQDLPR---EVLTTN---------------------PRRLSIIAESIRDGLAT 343
Query: 129 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR 183
WD ++N D T++I + L L P D +V
Sbjct: 344 WD------NWKHVNCD---------------KLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 184 GTVAYVP----QVSWIFNATVRDNILFGSAFE--------PARYEKAIDVTSLQHDLDLL 231
+ ++P + W F+ D ++ + P +I + L
Sbjct: 383 PSA-HIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLE 434
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAV---YSNSDVFIFDD-PLSALD----AHVGRQ 283
+ + ++ R++ Y+ F DD LD +H+G
Sbjct: 435 --------------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 284 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM-VKEEGTFEDLSNNGELFQK-L 341
E R++ + FL Q +I H+ G+ + + ++ +
Sbjct: 481 -LKNIEHPERMTLFRMVFLD-FRFLEQ--KIR--HDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 342 MENAGKMEEYVEEKED 357
+N K E V D
Sbjct: 535 CDNDPKYERLVNAILD 550
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-15
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I ++N + K + L N+N++I G I+G +G GKT+ + ++ L S
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGE 61
Query: 180 AVIRGTV------AYVP----QVSWIF-------NATVRDNILFG------SAFE-PARY 215
+ VP ++ +F N T +NI F S E R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 276 LDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTF 328
LDA + R + G T ++V+ + + DR+ ++ +G + + G
Sbjct: 171 LDARMRDSA-----RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 329 EDLSNN 334
EDL +N
Sbjct: 226 EDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELE 798
I ++V ++ L ++ I ++ GI+G +GAGK+ T RI+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT----TFMRIIAGLDVPS 58
Query: 799 RGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEA 853
G + D +A G + + RKI G++ Q+ L+ T N+ F
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLTAFENI-AF----------P 106
Query: 854 LERAHL-KDAIRRNSLGLDAQVSEAGE-------------NFSVGQRQLLSLSRALLRRS 899
L + K+ IR+ +V E + S Q+Q ++L+RAL++
Sbjct: 107 LTNMKMSKEEIRK-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159
Query: 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDR 947
+L+LDE + + DA ++ + R K + RL T++ D DR
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIFAIADR 210
Query: 948 ILLLDSGRVLEYDTPEELLSNEGSSF 973
+ +L G++++ PE+L N S
Sbjct: 211 VGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 194
NINL I G +A++G +G GK++L+ + + + V +P V
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 195 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+F + TV NI F + + + + L+ P
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 294
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKEL 183
Query: 295 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 334
G T V VT H Q DRI ++ EG + + GT +++
Sbjct: 184 GITTVYVT---H--DQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 110 NPPLTSGLPAISIRNGY--FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 167
+ G I + +++ + ++ I G +V ++G +G GKT+++
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILR- 59
Query: 168 MLGELPPVSDASAVIRGT-VAYVP----QVSWIF-------NATVRDNILFG-------S 208
++ L + I G V +P V +F + TV DN+ FG
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119
Query: 209 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVF 267
AR + + L+ R + +SGGQ+QRV++ARA+ V
Sbjct: 120 DEMDARVRELLRFMRLES------------YANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 268 IFDDPLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEG 320
+FD+P +A+D + R++ R + G T V VT +Q L DR++++HEG
Sbjct: 168 LFDEPFAAIDTQIRREL-----RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 321 MVKEEGTFEDL 331
V++ GT E++
Sbjct: 223 NVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---- 795
S +I+F V Y + G+SF I + VG++G +G+GK+ T+ R++
Sbjct: 11 GSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKT----TILRLIAGLE 65
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSD 847
+G + I G + R + G++ Q+ LF TV N+ + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQK-RNV-GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
Query: 848 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 907
A + E L L+ R ++S G GQ+Q ++L+RAL R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFP----HELS--G-----GQQQRVALARALAPRPQVLLFDEP 172
Query: 908 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGR 955
AA+ D I++ +R + + + T + D DR+L+L G
Sbjct: 173 FAAI----DTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 956 VLEYDTPEEL 965
V ++ TPEE+
Sbjct: 224 VEQFGTPEEV 233
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 181
L N+NL+I G V+I+G +G GK+++++ ++G L P +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 182 IRG-TVAYVPQVSWIFN----ATVRDN-----ILFGSAFEPA--RYEKAIDVTSLQHDLD 229
IR + +V Q FN T +N I R ++A++ L
Sbjct: 80 IRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 230 LLPGGDVTEIGERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
+ E+ ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++
Sbjct: 131 MA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 285 FDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333
+ +L GKT V+VT+ ++ +RII + +G V+ E +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 744 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 802 ILIDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSE 844
+ ID L +R +G + Q FNL P F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---------FNLIPLLTALENVELPLIFKY 112
Query: 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILV 903
E +RA + ++ L+ + + N S GQ+Q ++++RAL I++
Sbjct: 113 RGAMSGEERRKRA--LECLKM--AELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 904 LDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-14
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 194
+NL I G + ++G +G GKT+ + M+ L ++ V Y+P +S
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 195 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+F + TV +NI F R A ++ ++ L+ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 294
+SGGQ+QRV++ARA+ DV + D+PLS LDA + + R E+
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-----RAEIKKLQQKL 191
Query: 295 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 334
T + VT H QV DRI +++ G + + G+ ++
Sbjct: 192 KVTTIYVT---H--DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-14
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 53/226 (23%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 194
++ ++ G VA++G +G GKT+ + ML + + V +P +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79
Query: 195 IF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 240
+F + TV +NI F + R + + + LD P
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 294
+SGGQ+QRV++ARA+ V +FD+PLS LDA++ + R E+
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-----RAEIKHLQQEL 183
Query: 295 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 334
G T V VT H Q RI + ++G + + GT +++ ++
Sbjct: 184 GITSVYVT---H--DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 181
L I+L + G V+I+G +G GK++L+ +LG L P V + ++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 182 IR-GTVAYVPQVSWIFN----ATVRDNI----LFGSAFEPARYEKAIDVTS---LQHDLD 229
+R + +V Q T +N+ L + E+ + S L L
Sbjct: 79 LRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 289
P +SGG++QRV++ARA+ + + D+P LD+ ++V D I
Sbjct: 136 RKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--I 182
Query: 290 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325
++ G + V+VT++ R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E++ R +L G+S ++ + V I+G +G+GKS++L L + G++
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 804 IDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSEHS 846
++G ++ L LR + LG + Q L P
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQF---------HYLIPELTALENVIVPMLKMGKP 113
Query: 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
EA ER + + LGL ++S S G++Q ++++RAL +L DE
Sbjct: 114 KK---EAKERG--EYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 907 ATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
T +D + I E +++++ H R L + G+V+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGT--SIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIRGTVAYVP----Q 191
+I+L + G ++ I+G +G GKT+L+ + G P +S + I +P +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81
Query: 192 VSWIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 237
+ ++ + TV NI +G +A E R E +++T + P
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---- 137
Query: 238 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 293
+SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ IR ++
Sbjct: 138 -------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ-----IREDMIAAL 185
Query: 294 --SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 9e-11
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----E 796
+ ++ + ++ PVL+ +S ++ P + + I+G +G GK+ TL R + +
Sbjct: 2 TAALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKT----TLLRCLAGFEQ 55
Query: 797 LERGRILIDGFDIAKFGLM---DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDA 848
+ G I + G I R++ G + Q VLF + + L + A
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTA 113
Query: 849 DLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904
LE + + R ++S G GQ+Q +L+RAL ++++L
Sbjct: 114 QERQRIEAMLELTGISELAGR----YPHELS--G-----GQQQRAALARALAPDPELILL 162
Query: 905 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLD 952
DE +A+D + +++ IRE+ + + + D DRI ++
Sbjct: 163 DEPFSALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMK 213
Query: 953 SGRVLEYDTPEEL 965
GR+L+ +P EL
Sbjct: 214 QGRILQTASPHEL 226
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 40/230 (17%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDL 817
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 818 RKILGIIPQSPVLFSGTVRFNLDPFSEH-------SDADLW-------EALERAHLKDAI 863
R+ +G++ Q FNL P H + A + +A +A + +
Sbjct: 99 REEVGMVFQR---------FNLFP---HMTVLNNITLAPMKVRKWPREKAEAKA--MELL 144
Query: 864 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 920
+ +GL + ++ S GQ Q ++++RAL KI++ DE T+A+D V + L
Sbjct: 145 DK--VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVL-- 199
Query: 921 KTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+++ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 183
L IN+ I G +V ++G +G GK++ + + L +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 184 GTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 239
V V Q FN TV +NI P + K + ++LL D +
Sbjct: 100 EEVGMVFQR---FNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGL 149
Query: 240 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 296 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
T V+VT+++ F +V DR++ + G + EEG EDL +
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 6e-13
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 194
N++L + G I+G TG GKT + ++ ++ G V + +++
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 195 IF-------NATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243
++ + V+ N+ FG +P R ++H LD P
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---------- 126
Query: 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 297
+SGG++QRV++ARA+ +N + + D+PLSALD R LS T
Sbjct: 127 -TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-----REMLSVLHKKNKLT 180
Query: 298 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 331
+ +T +Q DRI +V +G + + G E++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 66/251 (26%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELER 799
I+ E + +++ L LS + + I+G TGAGK+ ++ +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKT----LFLELIAGFHVPDS 54
Query: 800 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNL--------DPFSEHS 846
GRIL+DG D+ DL I + Q+ LF V+ NL +
Sbjct: 55 GRILLDGKDVT-----DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906
+ ++ + RN +S G G++Q ++L+RAL+ KIL+LDE
Sbjct: 109 L----DTARDLKIEHLLDRNP----LTLS--G-----GEQQRVALARALVTNPKILLLDE 153
Query: 907 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSG 954
+A+D R Q+ RE + + T++ D DRI ++ G
Sbjct: 154 PLSALDPR----TQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
Query: 955 RVLEYDTPEEL 965
++++ PEE+
Sbjct: 205 KLIQVGKPEEI 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 59/232 (25%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------AYVP-- 190
++L++ G + ++G +G GKT+ + M+ L S I + +VP
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 191 --QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHDLDLLPGG 234
++ +F + TV DNI F E R + ++ L L+ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 235 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++ R EL
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM-----RAELK 183
Query: 295 ------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 334
G T + VT H QV DRI +++ G++++ G+ +++ +
Sbjct: 184 KLQRQLGVTTIYVT---H--DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 138 LLNINLDIPVGSLVAIVGGTGEGKTSLI------------------------SAMLGELP 173
L ++L G +++I+G +G GK++ + G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 174 PVSDAS-AVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDL 228
++R + V Q FN TV +N++ P + + + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 229 DLLPGGDVTEIGERG-----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 283
L I ER V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 284 VFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
V ++ +L GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 192 VLR-IMQ-QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 816
VL G+S D + I+G +G+GKS+ L + + + G I+++G +I D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 817 ----------LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------RA 857
LR L ++ Q FNL +S + LE
Sbjct: 81 KVADKNQLRLLRTRLTMVFQH---------FNL--WSHMT------VLENVMEAPIQVLG 123
Query: 858 HLKDAIRRNSLGLDAQV--SEAGENF-----SVGQRQLLSLSRALLRRSKILVLDEATAA 910
K R +L A+V E + S GQ+Q +S++RAL +L+ DE T+A
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 911 VD---VRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965
+D V + L + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 184 LDPELVG-EVL--RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Query: 966 LSN 968
N
Sbjct: 241 FGN 243
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 2e-12
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818
+L+ + + + GI G G GKS TL R I + F +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKS----TLMRA---------IANGQVDGFPTQEEC 495
Query: 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEA 877
+ + + S T LD + + L G D ++
Sbjct: 496 RTVYVEHDIDGTHSDTSV--LD--FVFESGVGTKEAIKDKL------IEFGFTDEMIAMP 545
Query: 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 937
S G + L+L+RA+LR + IL+LDE T +D A + + T + I+H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Query: 938 R---LNTIIDCDRILLLDSGRVLEY 959
L+ + C+ I+ + ++ +Y
Sbjct: 604 DSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193
+ L L + I G G GK++L+ A+ R YV
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDI 504
Query: 194 WIFNA--TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251
++ +V D + + L G I +SGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK---------LIEF-GFTDEMIAMPISALSGGWK 554
Query: 252 QRVSMARAVYSNSDVFIFDDPLSALD 277
++++ARAV N+D+ + D+P + LD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 844 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG--ENFSVGQRQLLSLSRALLRRSKI 901
E + + L R +++ LGLD ++ S GQ+ L L+ +R +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSM--LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLE 958
+VLDE T +D + + K ++ EF+ ++II H + + + + GR+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTKNL--TEEVWAVKDGRMTP 978
Query: 959 YD 960
Sbjct: 979 SG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
+K ++ +Y P + ++F S ++ ++G GAGKS+++N L + G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 16/229 (6%)
Query: 94 KRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPTLLNINLDIPVG 148
K EE + + P P G+ + + N F + +P + +IN +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGT-SKPQITDINFQCSLS 699
Query: 149 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQVSWIFNATVRDNIL 205
S +A++G G GK++LI+ + GEL P + V +AY+ Q + ++ L
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHENCRIAYIKQHA----FAHIESHL 753
Query: 206 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265
+ E ++ D + + G +R++ + +
Sbjct: 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813
Query: 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314
+ ++ + + + + + V +
Sbjct: 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE-SHSKMVAEV 861
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 9e-05
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 304
+SGGQK ++ +A + + + D+P + LD + ++ E G +++T+
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALK-EFEG-GVIIITHS 957
Query: 305 LHFLSQV-DRIILVHEGMVK 323
F + + + V +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-11
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSL---------ISAMLGELP----PVSDASAVIRGTV 186
+INLDI G V VG +G GK++L I++ G+L ++D RG V
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMNDTPPAERG-V 77
Query: 187 AYVPQVSWIFN-A-----TVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPG 233
V Q + A +V +N+ FG A R + +V L H LD P
Sbjct: 78 GMVFQ-----SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 234 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 293
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q+ R E+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-----RIEI 176
Query: 294 S------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGT 327
S G+T + VT H QV D+I+++ G V + G
Sbjct: 177 SRLHKRLGRTMIYVT---H--DQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 247 SGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 300
SGG++ + +A + + I D+P LD R++ R +L
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 301 VTNQLHFLSQVDRIILVHEGMVKEEGT 327
V++ D +I + E G+
Sbjct: 310 VSHDEELKDAADHVIRIS----LENGS 332
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1128 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.98 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.93 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.79 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.7 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.7 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.69 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.69 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.68 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.67 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.66 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.65 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.65 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.65 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.65 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.64 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.64 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.59 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.59 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.59 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.58 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.57 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.54 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.52 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.51 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.51 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.51 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.5 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.49 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.48 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.48 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.48 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.47 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.46 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.46 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.45 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.43 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.43 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.43 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.42 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.42 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.41 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.41 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.4 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.4 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.4 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.38 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.35 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.35 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.34 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.34 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.34 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.31 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.3 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.3 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.28 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.27 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.26 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.25 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.23 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.21 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.21 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.2 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.18 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.17 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.17 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.15 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.14 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.13 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.13 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.09 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.08 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.05 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.05 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.02 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.02 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.02 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.01 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.0 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.0 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.99 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.98 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.97 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.97 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.95 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.92 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.91 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.9 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.88 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.87 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.87 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.85 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.85 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.84 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.82 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.82 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.76 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.75 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.72 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.71 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.71 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.69 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.67 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.66 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.65 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.64 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.63 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.63 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.61 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.57 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.56 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.54 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.53 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.53 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.52 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.49 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.49 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.49 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.42 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.38 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.38 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.37 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.35 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.34 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.33 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.32 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.31 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.3 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.27 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.26 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.25 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.24 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.19 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.18 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.18 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.14 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.13 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.11 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.11 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.11 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.11 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.09 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.08 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.07 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.06 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.06 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.06 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.03 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.01 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.0 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.98 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.98 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.96 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.96 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.95 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.89 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.89 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.86 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.86 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.83 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.82 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.8 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.77 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.77 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.7 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.7 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.69 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.69 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.68 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.61 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.61 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.6 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.58 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.58 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.55 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.54 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.5 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.48 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.47 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.45 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.42 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.42 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.4 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.4 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.4 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.39 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.37 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.36 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.31 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.29 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.27 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.27 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.25 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.25 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.2 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.2 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.14 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.14 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.14 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.13 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.12 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.12 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.11 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.07 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.03 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.01 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.0 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.95 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.95 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.93 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.92 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.91 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.9 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.87 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.86 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.84 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.82 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.82 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.81 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.8 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.8 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.78 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.78 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.77 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.77 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.75 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.72 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.69 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.67 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.63 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.6 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.59 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.56 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.56 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.56 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.54 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.49 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.48 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.48 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.41 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.32 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.28 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.27 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.27 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.26 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.26 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.23 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.2 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.19 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.18 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.16 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.15 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.12 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.08 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.06 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.05 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.03 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.99 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.99 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.98 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.98 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.95 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.93 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.88 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.87 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.87 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.82 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.72 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.67 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.64 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.64 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.61 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.61 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.57 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.55 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.5 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.49 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.44 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.39 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.38 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.37 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.33 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.33 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 95.32 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.28 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.25 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.24 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.17 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.09 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.09 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.09 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.08 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.07 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.06 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.03 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.03 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.99 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.95 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.92 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.86 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.83 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.81 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.8 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.8 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.72 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.65 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.64 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.63 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.63 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.61 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.59 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.57 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.55 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 94.52 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.5 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.48 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.43 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.43 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.42 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.41 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.41 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-142 Score=1408.46 Aligned_cols=929 Identities=21% Similarity=0.281 Sum_probs=703.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC---CCCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP---LTSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~---~~~~~~ 118 (1128)
++++++|++.+..|.++++.+|+++.++..+..|+..++..+..+.++.+|++||.++++.++....+... ..+...
T Consensus 335 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 414 (1321)
T 4f4c_A 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKG 414 (1321)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCC
Confidence 34567788888999999999999999999999999999999999999999999999999876543221111 112234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++||+|+|++.+++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|.+.. +|++|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 699999999998767789999999999999999999999999999999999999999875432 45579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|||+|+||||++||+|||+||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||||||||+||||+|++|+
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999975 68899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||||+||+++++.+.+ ++....+|+|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|.+++..+
T Consensus 575 IliLDE~tSaLD~~te~~i~~-~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q 653 (1321)
T 4f4c_A 575 ILLLDEATSALDAESEGIVQQ-ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653 (1321)
T ss_dssp EEEEESTTTTSCTTTHHHHHH-HHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred EEEEecccccCCHHHHHHHHH-HHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence 999999999999999777665 5566678999999999999999999999999999999999999999999999988765
Q ss_pred chhhhhhhhcccCccccC----CC-C----CCCCCCCCCCCCC----------cc--ccccccccc--hhhhhhhhhhhc
Q 001189 346 GKMEEYVEEKEDGETVDN----KT-S----KPAANGVDNDLPK----------EA--SDTRKTKEG--KSVLIKQEERET 402 (1128)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~~~~~~----------~~--~~~~~~~~~--~~~~~~~~~~~~ 402 (1128)
...+......+.....++ .. . ........+.... .. ...+....+ ......++.+..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1321)
T 4f4c_A 654 TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEEN 733 (1321)
T ss_dssp HHHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHHTTTTS
T ss_pred hcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHc
Confidence 432221111000000000 00 0 0000000000000 00 000000000 000111222233
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 403 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS----SLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 403 g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
+...+..++.|+...+.++.+++.+++..+...+....+.|+..|.+.. ........+|..+|++++++..++.++
T Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 734 NAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333333333333333333333444555554332 222234567888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 556 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (1128)
..+++...+.+++.++|.+++++++++|+.||+. +++|+++|||++|++.+|..++..+..++..++.+++.++++.+
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 89999999999999999999998888888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 557 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 636 (1128)
Q Consensus 557 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~ 636 (1128)
..+...+++++++++++....++.+..+..........++....+.|+++|+++||+|+.++++.+++.+..+...+..+
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 66655554444444433333333222111111112223445667889999999999999999999999988887776655
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 637 VNMGANRWLAIRL----EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 712 (1128)
Q Consensus 637 ~~~~~~~wl~~~l----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~ 712 (1128)
.......+..... .+...+++++++.+........+ ...+..++.+......++..+...+...+..+.++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ-----PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSC-----HHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333222222 22222222222221111111111 11111111122222334455566677788899999
Q ss_pred HHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHH
Q 001189 713 ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 791 (1128)
Q Consensus 713 ~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l 791 (1128)
+|+.++++.+++.+. ...+++.||..|.|+|+||+|+|+.+ ..+||+|+||+|+|||+||||||||||||||+++|
T Consensus 1049 ~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp HHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHH
T ss_pred HHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHH
Confidence 999999987665322 23345568889999999999999743 23799999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccC
Q 001189 792 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 792 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|+|+|++|+|.|||+|+++++++++|++|+||||||.||+||||+||.++ .+.+|++++++++.++++++++++|.
T Consensus 1126 ~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~ 1205 (1321)
T 4f4c_A 1126 ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE 1205 (1321)
T ss_dssp TTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred hcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcC
Confidence 999999999999999999999999999999999999999999999998654 35789999999999999999999999
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEE
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|+++|++.+++||+|+||||++++.+||||
T Consensus 1206 GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I 1285 (1321)
T 4f4c_A 1206 GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCI 1285 (1321)
T ss_dssp TTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEE
T ss_pred CCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 949 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 949 ~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+||++|+|+|+|+|+||++++ +.|++|++.+
T Consensus 1286 ~Vld~G~IvE~Gth~eLl~~~-g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1286 AVVSNGTIIEKGTHTQLMSEK-GAYYKLTQKQ 1316 (1321)
T ss_dssp EEESSSSEEEEECHHHHHHCC-----------
T ss_pred EEEECCEEEEECCHHHHHhCC-cHHHHHHHHH
Confidence 999999999999999999974 6799888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-120 Score=1204.73 Aligned_cols=921 Identities=21% Similarity=0.310 Sum_probs=664.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC--CCCCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP--PLTSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~--~~~~~~~ 118 (1128)
++++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..+.++++|+.++++.+++.... .. ...+...
T Consensus 307 ~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 386 (1284)
T 3g5u_A 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQG 386 (1284)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCC
Confidence 44567888888899999999998888888888899999999999999999999999999876532211 11 1111234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+.++++++|+|+||+|++|++++||||||||||||+++|+|+++|++|.+.. +|++|
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 699999999998655568999999999999999999999999999999999999999875432 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 67889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||||+||+++++.+.+. ++...+|+|+|+||||++++..||+|++|++|+|+++|+++++++.++.|.++...+
T Consensus 547 iliLDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 625 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAA-LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ 625 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHH-HHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999888765 444557999999999999999999999999999999999999999988888876543
Q ss_pred chhhhhhhhccc---CccccC-CCC-CCCCCCCCCCCCCccccccccccchhhhhhhhhhh--cccchHHHHHHHHHHhh
Q 001189 346 GKMEEYVEEKED---GETVDN-KTS-KPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE--TGVVSFKVLSRYKDALG 418 (1128)
Q Consensus 346 ~~~~~~~~~~~~---~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~y~~~~g 418 (1128)
....+....... ...... ... .............. ...............++... .....+..+.+|.+..
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 703 (1284)
T 3g5u_A 626 TAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR-KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTE- 703 (1284)
T ss_dssp C----------------------------------------------------------CCCCCSCCCTTHHHHHHHHT-
T ss_pred hhcccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhhccccchHHHHHHHHhcch-
Confidence 221110000000 000000 000 00000000000000 00000000000000001100 1111222222222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcccccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 419 GLWVVLILLLCYFLTETLRVSSS----TWLSYWTDQSSLK--THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~~~----~~l~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
++.+++.+++.++...+....+ .++..|.+..... .....+|..+|++++++..++.+++.+++...+.+...
T Consensus 704 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~ 782 (1284)
T 3g5u_A 704 -WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTK 782 (1284)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222222222223 3333333221100 11234566778888888888889999999999999999
Q ss_pred HHHHHHHHHHHcCCccccc--cCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST---MSLWAIMP 567 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 567 (1128)
++|.+++++++++|+.||+ ++++|++++|+++|+..++..+...+..++..+..++..++++.+..+ +..++++|
T Consensus 783 ~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p 862 (1284)
T 3g5u_A 783 RLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862 (1284)
T ss_dssp HHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 589999999999999999988877777666666665555554444333 22333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 568 LLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI 647 (1128)
Q Consensus 568 ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 647 (1128)
+++++......+. +..........+.....+.|+++|+++||+|+.++++.+.+.+..+...+...... .|.++
T Consensus 863 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 936 (1284)
T 3g5u_A 863 IIAIAGVVEMKML---SGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA---HVFGI 936 (1284)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 4433322222111 11111111122334457899999999999999999999888877766554433322 22222
Q ss_pred HHHHHHHHHHHHHHH---HHH--HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 648 RLEIVGGLMIWLTAT---FAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 648 ~l~~~~~~~~~~~~~---~~v--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
...+...+..+..+. +.. ...+..+... +..++.+......++..+............+.+|+.++++.+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1011 (1284)
T 3g5u_A 937 TFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN-----VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTT-----HHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222221111111111 110 0111111111 111112222222333333333334556778999999998876
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
++.+..... ....++..|.|+++||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 1012 ~~~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1012 PEIDSYSTQ--GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp CSSSSCCSS--CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred Ccccccccc--cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 553221111 12234557889999999999643 236999999999999999999999999999999999999999999
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 802 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
|.+||+|++.++++.+|++|+||||||.+|++||+|||.+.. ..++++++++++.++++++++++|.||||.+|++|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 999999999999999999999999999999999999997654 35789999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~ 958 (1128)
.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|++
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchHHHHHhh
Q 001189 959 YDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
.|+|+||+++ ++.|++++...
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q 1270 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQ 1270 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHH
T ss_pred ECCHHHHHhC-CCHHHHHHHHH
Confidence 9999999987 46899888754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-73 Score=751.52 Aligned_cols=513 Identities=20% Similarity=0.278 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
.+.+.|+.++++..++.++..+++.+.+.+...++|.+++++++++|+.||+++++|++++|+++|++.++..+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888889999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH
Q 001189 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 619 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~ 619 (1128)
++..+..+++.++++++.++...++++.++++++++..++.+..+...+......+...+.+.|.++|+++||+|+++++
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 88888777777777777666544444333333333334444444444444445556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 001189 620 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLT 696 (1128)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 696 (1128)
+.+++.+..+...+..........+......++..+.. +..+...+ ..+..+ .+.+..++.++..+..++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~g~lt-----~g~~~~~~~~~~~~~~~l~ 370 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWV-HDGSLN-----FGDMLTTFSSVMMGSMALG 370 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSSC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCc-----HHHHHHHHHHHHHHHHHHH
Confidence 88888777776665554443333332222222222111 11111222 223322 2233334455556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEE
Q 001189 697 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVG 775 (1128)
Q Consensus 697 ~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ 775 (1128)
.+......+.....+++|+.++++.+++.+...+ ......+..|.|+|+||+|+|+.. .+++|+|+||+|+|||++|
T Consensus 371 ~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~va 448 (1321)
T 4f4c_A 371 LAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc--ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEE
Confidence 7777778888899999999999987655332111 112233556889999999999642 3589999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHH
Q 001189 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEAL 854 (1128)
Q Consensus 776 ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l 854 (1128)
||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+|+||++||||||.++.+ .+++++++++
T Consensus 449 ivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~ 528 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAAC 528 (1321)
T ss_dssp EEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH
T ss_pred EEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988764 6899999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001189 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934 (1128)
Q Consensus 855 ~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~ 934 (1128)
+.|+++++++.+|.|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.++++|++..+++|+|+
T Consensus 529 ~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 529 KMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp HHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred HHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 935 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 935 vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++++....
T Consensus 609 iaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 609 IAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp ECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred EcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999999999986 468988887643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-72 Score=686.10 Aligned_cols=546 Identities=22% Similarity=0.329 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG--PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++..+.+........ ...+..+++++.+...++.++..++....+.+...++|.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (587)
T 3qf4_A 26 VLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRK 105 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777888888887764322111 11233344455566667778888888899999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+.+...++++.++++++.+..++.+
T Consensus 106 ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 185 (587)
T 3qf4_A 106 VLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK 185 (587)
T ss_dssp HHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776666666666666555555555443333333222222333333333
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~ 658 (1128)
..+...+......+.+.+.+.|.++|+++||+|++++.+.+++.+..+...+..........+......++..+ +++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 265 (587)
T 3qf4_A 186 KGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVL 265 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445567788899999999999999999998887777766655554433322222222222222111 111
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
..+.+.+. .+..+ .+.+..++.+...+..++..+...+........+.+|+.++++.+++.+.. ..+.+.+
T Consensus 266 ~~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~ 336 (587)
T 3qf4_A 266 WFGGVLVR-NNQME-----IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALP 336 (587)
T ss_dssp HHHHHHHH-TTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCS
T ss_pred HHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccC
Confidence 11122222 22221 122333344445555566666667777788899999999999866543211 1111223
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 337 NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 44678999999999976556899999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++.+|.|+||.++++|.+||||||||++|||||++
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 9999999999999999999998765 467889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|++++. +.|.+++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~-~~~~~~~ 575 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC-KPYREIY 575 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHC-HHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999999764 4566665
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
..
T Consensus 576 ~~ 577 (587)
T 3qf4_A 576 ES 577 (587)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=686.46 Aligned_cols=545 Identities=25% Similarity=0.361 Sum_probs=434.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH--GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+++.+++.++...+....+++++.+.+....... ....+..+++++.++..++.+++.++....+.+...++|.++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 118 (598)
T 3qf4_B 39 LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFE 118 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777765432111 12334556666677778888888999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
++++.|+.||+++++|++++|+++|++.++..+...+..++..+..++..++++....+...++++.++++++.+..++.
T Consensus 119 ~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 198 (598)
T 3qf4_B 119 KLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198 (598)
T ss_dssp HHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777777766666655554444444444555555
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW-- 658 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-- 658 (1128)
+..++..+......+++.+.+.|.++|+++||+|++++++.+++.+..+...+..........+......++..+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (598)
T 3qf4_B 199 SQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALI 278 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666677888999999999999999999999888887776666555444443333333333333222211
Q ss_pred -HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 659 -LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 659 -~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
..+.+.+ ..+..+ .+.+..++.++..+..++..+...+........+++|+.++++.+++.+. ....+.
T Consensus 279 ~~~g~~l~-~~g~ls-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~ 348 (598)
T 3qf4_B 279 SGFGGWLA-LKDIIT-----VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVEL 348 (598)
T ss_dssp HHHHHHHG-GGTSSC-----HHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCC
T ss_pred HHHHHHHH-HcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCC
Confidence 1122222 222221 23344444555556677788888888889999999999999987765421 112223
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+.+
T Consensus 349 ~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 349 REVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 4566789999999999754 479999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|.|++|.++++|.+||||||||++||||++
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998764 35778899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+|++++. +.|+++
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 586 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR-GFYYEL 586 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT-CHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC-CHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999864 577776
Q ss_pred HHh
Q 001189 977 VQS 979 (1128)
Q Consensus 977 ~~~ 979 (1128)
+..
T Consensus 587 ~~~ 589 (598)
T 3qf4_B 587 FTS 589 (598)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-70 Score=668.38 Aligned_cols=542 Identities=22% Similarity=0.333 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++.++.+....... ....+. .+++++.++..++.++..++....+.+...+++.+++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 109 (582)
T 3b5x_A 30 STIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFM 109 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666667777766654321111 112222 22455556677777888888889999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+++...++++.++++++.+..++.+..
T Consensus 110 ~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 189 (582)
T 3b5x_A 110 HMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF 189 (582)
T ss_pred cCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777777777777777766666666666655544444444444444555555
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT--- 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~--- 660 (1128)
++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........|......++..+...++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (582)
T 3b5x_A 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL 269 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677888899999999999999999999998888888777776666655555565555544433322221
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+. .+..+ .+.+..++.++..+..++..+...+........+++|+.++++.+++.+. . +.+.++.
T Consensus 270 g~~~v~-~g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~--~~~~~~~ 338 (582)
T 3b5x_A 270 ASVDSI-RAELT-----PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---G--KYEAERV 338 (582)
T ss_pred HHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---C--CCCCCCC
Confidence 222222 22221 23444455566667777888888888889999999999999986654321 1 1112334
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 56799999999997533579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999998764 4578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+|++++. +.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~ 577 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD-GAYAQLHR 577 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 99999999999999999999999999987899999999999999899999999999999999999999764 56776665
Q ss_pred h
Q 001189 979 S 979 (1128)
Q Consensus 979 ~ 979 (1128)
.
T Consensus 578 ~ 578 (582)
T 3b5x_A 578 I 578 (582)
T ss_pred H
Confidence 3
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-70 Score=669.44 Aligned_cols=545 Identities=22% Similarity=0.302 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++..+.+........ ...+. .+++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (582)
T 3b60_A 28 IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGH 107 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666667777777777654321111 11121 224455566677778888888899999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+++...++++.++++++.+..++.+
T Consensus 108 l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b60_A 108 MMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187 (582)
T ss_dssp HHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777777777777766666666666655444443333333444444555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 661 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 661 (1128)
..++..+......+++.+.+.|.++|+++||+|+.++++.+++.+..+...+..........|......++..+...++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (582)
T 3b60_A 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566778888999999999999999999999998888888877777666666666666665555444333322
Q ss_pred HHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 662 TFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 662 ~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
.+... ..+.. ..+.+..++.++..+..++..+...+........+++|+.++++.+++.+. . +.+.++
T Consensus 268 ~~g~~~v~~g~l-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~--~~~~~~ 337 (582)
T 3b60_A 268 YAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---G--KRVIDR 337 (582)
T ss_dssp HHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---C--CBCCSC
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---C--CCCCCC
Confidence 22211 11211 233444455566667777888888888889999999999999987655321 1 111233
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++...+|+
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 45779999999999743247999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||+++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998754 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+|++++. +.|++++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 576 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 576 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcC-CHHHHHH
Confidence 999999999999999999999999999987899999999999999899999999999999999999999764 5677766
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
+.
T Consensus 577 ~~ 578 (582)
T 3b60_A 577 KM 578 (582)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-70 Score=672.30 Aligned_cols=504 Identities=22% Similarity=0.347 Sum_probs=394.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
+.++.++..++.+++.++....+.+...+++.++++++++.|+.||+++++|++++|+++|++.++..+...+..++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 146 (578)
T 4a82_A 67 LFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDC 146 (578)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888999999999999999999999999999999999999999999999876554344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHH
Q 001189 545 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 624 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~ 624 (1128)
..++..++++....+...++.+.++++++.+..++.+..++..+......++..+.+.|.++|+++||+|++++.+.+++
T Consensus 147 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 226 (578)
T 4a82_A 147 ITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF 226 (578)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHH
Confidence 44455555555554443333333333333334444455555555556667788899999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 625 GKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701 (1128)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 701 (1128)
.+..+...+..........+.......+. .++++..+.+.+.. +..+ .+.+..++.++..+..++..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~~l~~l~~~ 300 (578)
T 4a82_A 227 DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVAS 300 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555444333222222222222221 11222222222222 2221 233344455566666777778888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCC
Q 001189 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 781 (1128)
Q Consensus 702 ~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~G 781 (1128)
+........+++|+.++++.+++.+.. ..+.+.++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sG 377 (578)
T 4a82_A 301 FTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCC
Confidence 888889999999999999876553211 11122234567899999999997655689999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHH
Q 001189 782 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLK 860 (1128)
Q Consensus 782 sGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~ 860 (1128)
||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999998754 45788999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 001189 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940 (1128)
Q Consensus 861 ~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~ 940 (1128)
++++++|.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++
T Consensus 458 ~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 941 ~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
++..||||++|++|++++.|+|+|++++. +.|.+++.
T Consensus 538 ~~~~~d~i~~l~~G~i~~~g~~~el~~~~-~~~~~~~~ 574 (578)
T 4a82_A 538 TITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 574 (578)
T ss_dssp GTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHHT
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 99999999999999999999999999864 56766654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-69 Score=712.25 Aligned_cols=510 Identities=21% Similarity=0.318 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
.|..+|++++++..++.+++.+++...+.+...++|.+++++++++|+.||+++++|++++|+++|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH
Q 001189 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 619 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~ 619 (1128)
++..+..+++.++++++.++...+++++++++++....++.+..++..+......++..+++.|+++|+++||+|+.+++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 88887777777777666665444444444444444444555555555555666677888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001189 620 MADINGKSMDKNIRYTLVNMGANRWLAIRLEI----VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL 695 (1128)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 695 (1128)
+.+++.+..+...+..........+......+ ...+++|+++.+......+.+. .+ .++.+......++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~--~~-----~~~~~~~~~~~~~ 341 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQ--VL-----TVFFSVLIGAFSV 341 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSC--HH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HH-----HHHHHHHHHHHHH
Confidence 88888777776665544322222222211111 2222333333322221111111 11 1112222333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEE
Q 001189 696 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKV 774 (1128)
Q Consensus 696 ~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v 774 (1128)
..+...+........+++|+.++++.+++.+...+...++ .+..|.|+++||+|+|+++ .+++|+|+||+|+|||++
T Consensus 342 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~ 419 (1284)
T 3g5u_A 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence 5566666777888899999999987665432211111111 2346789999999999753 347999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHH
Q 001189 775 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 853 (1128)
Q Consensus 775 ~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~ 853 (1128)
|||||||||||||+++|+|+++|++|+|.+||+|++.++++++|++|+||||+|.+|++||+|||.+.. ..++++++++
T Consensus 420 ~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~ 499 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499 (1284)
T ss_dssp EEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998654 4688999999
Q ss_pred HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEE
Q 001189 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 933 (1128)
Q Consensus 854 l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi 933 (1128)
++.++++++++++|.|+||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|+...+++|+|
T Consensus 500 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i 579 (1284)
T 3g5u_A 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579 (1284)
T ss_dssp HHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 934 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 934 ~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+||||++++.+||+|+||++|+|++.|+|+||+++. +.|.+++..
T Consensus 580 ~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 624 (1284)
T 3g5u_A 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMT 624 (1284)
T ss_dssp EECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTT-SHHHHHHHH
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC-CHHHHHHHH
Confidence 999999999999999999999999999999999864 567777654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-63 Score=620.67 Aligned_cols=195 Identities=18% Similarity=0.240 Sum_probs=156.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc-CCCCCCCCceeecCcEEEEecCC-CC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS-WI 195 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G-~~~~~~g~~~~~~~~i~~v~Q~~-~l 195 (1128)
..+...|++++|+. +++|+|+||++++|++++|+||||||||||+++|+| .+. |.......+++|++|++ .+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGT 507 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEccccccc
Confidence 35777899999963 579999999999999999999999999999999994 331 11110112478999985 33
Q ss_pred -CcccHHHHHhcCCCCCHHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 196 -FNATVRDNILFGSAFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 196 -~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
...||.||+.+......+++.++++..++. +..+.. ..+||||||||++|||||+.+|++|||||||
T Consensus 508 ~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp CTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred ccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 467999999862110156777888888884 344332 2579999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe-eecChhHHh
Q 001189 274 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFEDLS 332 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 332 (1128)
++||+.+.+++++.+.. .|+|+|+|||+++++.. ||+|++|++|+++ +.|+++++.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999986544 58999999999999875 8999999999997 578877654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-64 Score=614.68 Aligned_cols=198 Identities=25% Similarity=0.328 Sum_probs=165.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|+
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999963 3799999999999999999999999999999999999999999975 24699
Q ss_pred EEcCCCcc-ccccHhhccccC-C-CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVL-FSGTVRFNLDPF-S-EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~-~-~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+ +..||.+|+... . .. ..+.+.++++.. |++........+||||||||++|||||+++
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 456999887532 0 00 112233333332 343334444568999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |++.+.|+|++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999864 48999999999999987 999999986 88888999998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-64 Score=608.85 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=164.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 4899999999953 4799999999999999999999999999999999999999999975 23699
Q ss_pred EEcCCCcc-ccccHhhccccC-C-C-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVL-FSGTVRFNLDPF-S-E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~-~-~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.. +..||.+|+... . . ...+.+. +.++. .|+.........+||||||||++|||||+.+
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~--~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKP--LGIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTT--TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 456998887532 0 0 0111222 22222 3454445555678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...|++.|+++. .++|||+|||+++++.. ||||++|++ |++++.|+|++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999864 38999999999999987 999999986 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-61 Score=580.88 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=163.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 4889999999964 468889999999999999999999999999999999999999999775 3589
Q ss_pred EEcCCCcc-ccccHhhccccCC-C---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFS-E---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~-~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.. +..||++|+.... . .....+.++++..+ +.........+||||||||++|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN-----------LHRLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT-----------GGGCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 4679999985321 1 11223344444444 3333444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELL 966 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~ 966 (1128)
+|+||||||||++||+.+...+++.|+++. .++|||+||||++++.. ||||+||++ |.+...++|.++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999864 47899999999999987 999999986 5666677777654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-61 Score=599.59 Aligned_cols=195 Identities=25% Similarity=0.305 Sum_probs=125.1
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHH---------------------HHHhcCCCCCCCCc------ee-----
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI---------------------SAMLGELPPVSDAS------AV----- 181 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl---------------------~~l~G~~~~~~g~~------~~----- 181 (1128)
.+.+|+||||+|++|++++|+||||||||||+ +++.|+..|+.|.. +.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 78888877764311 11
Q ss_pred ----ecCcEEEEecCCCC--------------------CcccHHHHHhcCCCCC--H--HHH-----HHHHHHhCcHHHH
Q 001189 182 ----IRGTVAYVPQVSWI--------------------FNATVRDNILFGSAFE--P--ARY-----EKAIDVTSLQHDL 228 (1128)
Q Consensus 182 ----~~~~i~~v~Q~~~l--------------------~~~Tv~eni~~g~~~~--~--~~~-----~~~~~~~~l~~~~ 228 (1128)
.+..+++++|.+.+ ...||+||+.+..... . .+. .++.+..+ .+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l 186 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FL 186 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHH---HH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH---HH
Confidence 12235555554332 2469999998742211 0 000 01111111 12
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 229 ~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.+.-.+ ........+|||||||||+|||||+.+|+ +||||||||+||+...+++++.+.....+|.|+|+|||+++
T Consensus 187 ~~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 187 QNVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HHTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 2111000 01233456899999999999999999998 99999999999999999999866554456899999999999
Q ss_pred chhcCCEEEEE------eCCeEeeecChhHHh
Q 001189 307 FLSQVDRIILV------HEGMVKEEGTFEDLS 332 (1128)
Q Consensus 307 ~l~~~d~i~~l------~~G~i~~~g~~~~l~ 332 (1128)
++..||+|++| ++|++++.|+++++.
T Consensus 266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 266 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 98889999999 889999998877653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-60 Score=576.67 Aligned_cols=197 Identities=19% Similarity=0.295 Sum_probs=160.6
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPS-----DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~G-----e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
++++++|+.. ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 4566777532 35789999999999 8899999999999999999999999999962 11 3469
Q ss_pred EEEcCCCc-cccccHhhcccc--CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPV-LFSGTVRFNLDP--FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~-lf~~Tv~~nl~~--~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++. .|..|+++|+.. ... .......++++..++ .........+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 467799998742 111 223344445554443 333444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLSN 968 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~~ 968 (1128)
+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999999864 48999999999999987 999999986 999999999999864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-57 Score=506.20 Aligned_cols=270 Identities=31% Similarity=0.496 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHH
Q 001189 706 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 785 (1128)
Q Consensus 706 e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKS 785 (1128)
+..+.+++|+.++++.+++.... ....+.++..+.|+++||+|+|+++ .++|+||||+|++||++|||||||||||
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 34456778888777543332110 1111122345789999999999643 4799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHH
Q 001189 786 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIR 864 (1128)
Q Consensus 786 Tll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~ 864 (1128)
||+++|+|+++|++|+|.+||.|+..++...+|++|+||||+|.+|++||++||.+.. ..++++++++++.+++.+++.
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 357889999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh
Q 001189 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944 (1128)
Q Consensus 865 ~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~ 944 (1128)
.+|.||+|.+++.|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++++..
T Consensus 175 ~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred hccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 945 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 945 ~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||||++|++|+|++.|+|++|+++. +.|+.++...
T Consensus 255 aD~i~vl~~G~iv~~G~~~el~~~~-~~y~~l~~~q 289 (306)
T 3nh6_A 255 ADQILVIKDGCIVERGRHEALLSRG-GVYADMWQLQ 289 (306)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHHT-SHHHHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHhcC-hHHHHHHHHH
Confidence 9999999999999999999999864 5787777643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-53 Score=517.81 Aligned_cols=300 Identities=28% Similarity=0.419 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +..+....
T Consensus 260 ~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 339 (578)
T 4a82_A 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGR 339 (578)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCe
Confidence 3456778888889999999999999999999999999999999999999999999999987654322111 11122346
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|++ +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++||
T Consensus 340 i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 340 IDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp EEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 999999999974 3468999999999999999999999999999999999999999875422 234699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|++
T Consensus 419 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i 498 (578)
T 4a82_A 419 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498 (578)
T ss_dssp EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999864 467888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+|||||||+||+++++.+.+.+ +...+++|+|+||||++.+..||+|++|++|+++++|+++|+.+.++.|.+++.
T Consensus 499 lllDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 499 LILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp EEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred EEEECccccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999888754 444568999999999999999999999999999999999999988888877764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=515.03 Aligned_cols=302 Identities=27% Similarity=0.441 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCC
Q 001189 41 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLP 118 (1128)
Q Consensus 41 ~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~ 118 (1128)
.++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +.++...
T Consensus 261 ~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 340 (587)
T 3qf4_A 261 MIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEG 340 (587)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCC
Confidence 34566788888899999999999999999999999999999999999999999999999987653222111 1112234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. ++++|
T Consensus 341 ~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 6999999999974 3468999999999999999999999999999999999999999875432 35579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999864 56788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
|||||||||+||+++++.+++.+.+ ..+|+|+|+||||++.+..||+|++|++|+++++|+++|+.++++.|++++..
T Consensus 500 illlDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 577 (587)
T 3qf4_A 500 VLILDDCTSSVDPITEKRILDGLKR-YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES 577 (587)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHH-HSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999986543 45789999999999999999999999999999999999999888888877754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-52 Score=509.65 Aligned_cols=300 Identities=25% Similarity=0.375 Sum_probs=265.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......+..+....|++
T Consensus 265 ~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b5x_A 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDV 344 (582)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEE
Confidence 35667888888999999999999999999999999999999999999999999999998765422111111112346999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|||||
T Consensus 345 ~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 345 KDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 9999999742 367999999999999999999999999999999999999999875422 345799999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999986 456788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.++.||+|++|++|++++.|+++++.+.++.|.+++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDE-LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578 (582)
T ss_pred EECccccCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999886544 34589999999999999999999999999999999999999888888887654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-52 Score=508.96 Aligned_cols=300 Identities=28% Similarity=0.392 Sum_probs=263.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......+..+....|++
T Consensus 265 ~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b60_A 265 FVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEF 344 (582)
T ss_dssp HHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEE
Confidence 34567777788899999999999999999999999999999999999999999999998765422111111122346999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+|||
T Consensus 345 ~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 345 RNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 9999999732 267999999999999999999999999999999999999999875421 234699999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|+++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999986 457788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.++.||+|++|++|++++.|+++++.+.++.|.+++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHH-HhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 9999999999999999886544 34589999999999999999999999999999999999999887778877653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=516.46 Aligned_cols=301 Identities=26% Similarity=0.409 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CCCCCCCcE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAI 120 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~i 120 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +..+....|
T Consensus 276 ~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i 355 (598)
T 3qf4_B 276 ALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEI 355 (598)
T ss_dssp HHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeE
Confidence 3456778888889999999999999999999999999999999999999999999999987664322111 111223469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+|
T Consensus 356 ~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 356 EFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 99999999973 367999999999999999999999999999999999999999875432 2446999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|++|
T Consensus 434 v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp ECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999864 5667888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.+..||+|++|++|+++++|+++++.++++.|.+++..+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 590 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWK-LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHH-HHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999876544 346899999999999999999999999999999999999999888888887643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=442.30 Aligned_cols=237 Identities=34% Similarity=0.551 Sum_probs=217.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 35999999999942224799999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||+|.+|..||++|+.+.. ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999998753 345678889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
||||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.+++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999876789999999999998889999999999999999999998764556665543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=459.60 Aligned_cols=260 Identities=25% Similarity=0.454 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCC--CCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCcc
Q 001189 83 ITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 160 (1128)
Q Consensus 83 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsG 160 (1128)
...++.+.++++|+.++++.+++..... .+.......|+++|++|+|+. ++++|+|+||+|++|++++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 3456778899999999998765322111 111122346999999999973 357999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHH
Q 001189 161 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 227 (1128)
Q Consensus 161 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~ 227 (1128)
||||+++|+|+++|++|.+.. ++..||||||+|++|++||+|||.+|.. .+.+++.++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999875432 2446999999999999999999999864 567889999999999999
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccc
Q 001189 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 307 (1128)
Q Consensus 228 ~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 307 (1128)
++.+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+++.+.. ..+++|+|+||||++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~-l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH-HHTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH-HcCCCEEEEEEcChHH
Confidence 999999999999999999999999999999999999999999999999999999999886543 4468999999999999
Q ss_pred hhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 308 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 308 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
+..||+|++|++|+|++.|+++++++..+.|..++..+
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999888888887653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=459.30 Aligned_cols=240 Identities=35% Similarity=0.681 Sum_probs=224.5
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001189 735 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814 (1128)
Q Consensus 735 ~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 814 (1128)
+..||..+.|+++||+++|+....++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..+++
T Consensus 11 ~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp -CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH
T ss_pred CcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh
Confidence 45688888999999999996444579999999999999999999999999999999999998 89999999999999999
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
..+|+.|+||||++.+|..||++|+.++....+++++++++.+++.+++++.|.++++.+++.|.+||||||||++||||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998776677889999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|+++|+|||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||++|++|+|++.|+|+++.+++...|.
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999999987778999999999988888999999999999999999999988766554
Q ss_pred H
Q 001189 975 K 975 (1128)
Q Consensus 975 ~ 975 (1128)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=430.24 Aligned_cols=234 Identities=34% Similarity=0.584 Sum_probs=213.3
Q ss_pred ccEEEEEEEEEeCCCC-CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
+.|+++||+++|+... +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999996431 3699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+|+||+|.+|..|+++|+.+.. ...++++.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999997643 23567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+||||||||++||+.+++.+++.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|..++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 251 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN-GEYAEMW 251 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHHH
Confidence 9999999999999999999999999987789999999999998889999999999999999999998753 4455444
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=432.60 Aligned_cols=236 Identities=31% Similarity=0.483 Sum_probs=212.9
Q ss_pred ccEEEEEEEEEeCC-CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y~~-~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
+.|+++||+++|+. ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 12479999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCccccccHhhccccCCC-CCH-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSE-HSD-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~-~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||||+|.+|..||+||+.+... ..+ +++.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998999999976432 233 567777888889999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
|+||||||||++||+.+++.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCc-HHHHHH
Confidence 999999999999999999999999998754 79999999999998889999999999999999999998754 456655
Q ss_pred HH
Q 001189 977 VQ 978 (1128)
Q Consensus 977 ~~ 978 (1128)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=432.93 Aligned_cols=224 Identities=34% Similarity=0.574 Sum_probs=208.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999422 479999999999999999999999999999999999999999999999999988777778899999
Q ss_pred EcCCCccccccHhhccccC-C-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLFSGTVRFNLDPF-S-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~-~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||+|.+|..|+++|+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999989999999875 2 3457788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||||++|++|++++.|+++++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999987678999999999999878999999999999999999999764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-48 Score=480.45 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=156.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHH-HhcCC-------CC----------------
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT-LFRIV-------EL---------------- 797 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~-l~g~~-------~p---------------- 797 (1128)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999976 26999999999999999999999999999996 76554 22
Q ss_pred --CCc-------eEEECCEecCCCCh----------HHhhhceEEEc---------CCCc--------------------
Q 001189 798 --ERG-------RILIDGFDIAKFGL----------MDLRKILGIIP---------QSPV-------------------- 829 (1128)
Q Consensus 798 --~~G-------~I~i~g~~i~~~~~----------~~~r~~i~~v~---------Q~~~-------------------- 829 (1128)
.+| .|.+||.++...+. +.+|+.++++| +...
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68999988865432 23343333222 2110
Q ss_pred --------------------------ccc-ccHhhccc--------cCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-h
Q 001189 830 --------------------------LFS-GTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDA-Q 873 (1128)
Q Consensus 830 --------------------------lf~-~Tv~~nl~--------~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~ 873 (1128)
.+. .+|.+|+. ++.... .+ ....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~--~~------~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES--AI------FRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH--HH------HHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch--HH------HHHHHHHHHc--CCCccc
Confidence 011 14444432 111110 00 1123445554 4444 3
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccC---CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRR---SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 949 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~---p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~ 949 (1128)
.+....+|||||||||+|||+|+++ |+||||||||+|||+.+.+.|.+.|+++. +++|||+|||+++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5666778999999999999999996 69999999999999999999999998864 5899999999999997799999
Q ss_pred EE------eCCEEEEecChhHHhhcCC
Q 001189 950 LL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 950 vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
+| ++|+|++.|+|+++.+...
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 6999999999999987643
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=405.18 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=194.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+++|+.+..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964335799999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||+|.+|..|++||+.+.....+....++++.+++.+.++.+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987544445556677888899999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+++.+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999974 554467999999999999878999999999999999999999865
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=427.85 Aligned_cols=223 Identities=26% Similarity=0.423 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh--
Q 001189 742 GSIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 817 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-- 817 (1128)
..|+++||+++|+.. ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+..++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999642 2359999999999999999999999999999999999999999999999999999887654
Q ss_pred -hhceEEEcCCCccccc-cHhhccccC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 -r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|++||||||++.+|.. ||++|+.+. ..... +++.++|+.+++ +........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----------GGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHH
Confidence 7789999999998876 999999642 11222 234445555444 344445557899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .++|||+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999865 38999999999999987 999999999999999999999
Q ss_pred hhcCCCchHH
Q 001189 966 LSNEGSSFSK 975 (1128)
Q Consensus 966 ~~~~~~~~~~ 975 (1128)
+.++...+.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 9876655543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=406.00 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=195.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 899999999964334799999999999999999999999999999999999999999999998 4999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||+|.++..|+++|+.+.....++...++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+|||
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988889999998754444445667777788888888888899999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHH---HHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 904 LDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~---~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
|||||++||+.+++.+.+.|. +..+++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|..++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 226 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhcc-HHHHHHH
Confidence 999999999999999999994 334589999999999998779999999999999999999998653 3454443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=465.40 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=152.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHH---------HHHhcCCCCC------Cc------e
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------NTLFRIVELE------RG------R 801 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll---------~~l~g~~~p~------~G------~ 801 (1128)
.+++++++ ...|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 46666653 2579999999999999999999999999997 3444433332 22 3
Q ss_pred EEECCEecCCCChH----------Hhh-------------------------------hceEEEcCCCcccc--------
Q 001189 802 ILIDGFDIAKFGLM----------DLR-------------------------------KILGIIPQSPVLFS-------- 832 (1128)
Q Consensus 802 I~i~g~~i~~~~~~----------~~r-------------------------------~~i~~v~Q~~~lf~-------- 832 (1128)
|.+++.++...+.. ..| +..|+++|+..++.
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~ 741 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDV 741 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccc
Confidence 55665555432210 111 23466776665443
Q ss_pred -------------------------ccHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001189 833 -------------------------GTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 885 (1128)
Q Consensus 833 -------------------------~Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq 885 (1128)
.|+.+++.++.... ..+.. +.++.+ |+.. .+++.+.+|||||
T Consensus 742 c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGE 810 (916)
T 3pih_A 742 CKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGE 810 (916)
T ss_dssp TTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHH
T ss_pred ccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHH---------HHHHHc--CCchhhccCCccCCCHHH
Confidence 23344443332211 11122 233332 3332 3577788999999
Q ss_pred HHHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE------eCCE
Q 001189 886 RQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGR 955 (1128)
Q Consensus 886 rqrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl------~~G~ 955 (1128)
||||+|||||+++| +||||||||+|||+.+.+.|++.|+++. +|+|||+|+|+++++..||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999875 7999999999999999999999999865 589999999999999899999999 8999
Q ss_pred EEEecChhHHhhcCC
Q 001189 956 VLEYDTPEELLSNEG 970 (1128)
Q Consensus 956 i~~~g~~~~l~~~~~ 970 (1128)
|++.|+|++++++++
T Consensus 891 Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 891 IVATGTPEEIAKNPH 905 (916)
T ss_dssp EEEEESHHHHHSCTT
T ss_pred EEEEcCHHHHHhCCc
Confidence 999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=413.52 Aligned_cols=214 Identities=28% Similarity=0.490 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 49999999999643 35999999999999999999999999999999999999999999999999994 2334567889
Q ss_pred eEEEcCCC--ccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
||||||+| .+|..||++|+.+.. ....+ ++.++++.+ |++........+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCCcccCCHHHHHHHHH
Confidence 99999998 477789999996421 22332 344444444 44444445556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+|||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998865 3 8999999999999987 999999999999999999999764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=395.12 Aligned_cols=218 Identities=35% Similarity=0.696 Sum_probs=193.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 198 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 198 (1128)
.++++|++|+|+. +++++|+++||++++|++++|+||||||||||+++|+|+++|++|. +.+.+.|+|+||+|++|+.
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE-EEECCEEEEEecCCcccCC
Confidence 5899999999963 2468999999999999999999999999999999999999998764 5567789999999999988
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+|||.++......++.++++.+++.+.++.+|.++++.+++++.+|||||||||+|||||+++|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999865555566778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHH
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 338 (1128)
.+++.+++.++....+++|+|++||+++.+..||+|++|++|++++.|+++++....+.|
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 223 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 999999875444334589999999999998889999999999999999999987654434
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=398.38 Aligned_cols=217 Identities=21% Similarity=0.375 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776655 4569
Q ss_pred EEEcCCCccccc-cHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||++.+|.. |++||+.+.. ....++..+. +.+.++.++ |++...+....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999977 9999997532 1112222222 223334332 355555666788999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999999875 58999999999998876 99999999999999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=394.51 Aligned_cols=223 Identities=50% Similarity=0.901 Sum_probs=198.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 198 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 198 (1128)
.++++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.+.|+|+||+|++++.
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEEEEcCCCcCCCc
Confidence 4899999999963 236799999999999999999999999999999999999999875 45567789999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+|||.++.....++..++.+.+++.+.+..+|.+++|.+++++.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999865555566778888999888988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--ccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 279 HVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 279 ~~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
.+++.+++.+. ....+|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++.
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 99999998664 222358999999999999888999999999999999999998877666666554
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=450.64 Aligned_cols=211 Identities=26% Similarity=0.355 Sum_probs=155.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cCC-------CCCCc-------------e
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIV-------ELERG-------------R 801 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~-g~~-------~p~~G-------------~ 801 (1128)
.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 489999852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEECCEecCCCC---hH-------Hhh---------hceEEEcCCCccc-------------------------------
Q 001189 802 ILIDGFDIAKFG---LM-------DLR---------KILGIIPQSPVLF------------------------------- 831 (1128)
Q Consensus 802 I~i~g~~i~~~~---~~-------~~r---------~~i~~v~Q~~~lf------------------------------- 831 (1128)
|.+||.++...+ +. ..| +.+||+||...+-
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888875322 11 111 3468888864321
Q ss_pred ------------------------cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001189 832 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 886 (1128)
Q Consensus 832 ------------------------~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqr 886 (1128)
..|+.+|+.++.... .+. ...+.++.+ |+.. ..+....+||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIK------RKLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHH------HHHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHH------HHHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 112333333222111 010 122344543 5554 46667778999999
Q ss_pred HHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE------eCCEE
Q 001189 887 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 956 (1128)
Q Consensus 887 qrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl------~~G~i 956 (1128)
|||+|||+|+++| +||||||||+|||+.+.+.+++.|+++. .++|||+|||+++.+..||||++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999998865 589999999999998779999999 68999
Q ss_pred EEecChhHHhhcCC
Q 001189 957 LEYDTPEELLSNEG 970 (1128)
Q Consensus 957 ~~~g~~~~l~~~~~ 970 (1128)
++.|+|+++.+...
T Consensus 932 v~~g~~~el~~~~~ 945 (972)
T 2r6f_A 932 VAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEESHHHHHTCTT
T ss_pred EEecCHHHHHhCch
Confidence 99999999987543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=401.64 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999964 36999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
|+||||++.+|.. ||++|+.+. ..... +++.++++.+ |++........+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-----------GLKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 9999999998876 999999652 12222 2233344443 44444555567899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++++++.+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 47999999999999987 9999999999999999999998654
Q ss_pred C
Q 001189 970 G 970 (1128)
Q Consensus 970 ~ 970 (1128)
.
T Consensus 251 ~ 251 (263)
T 2olj_A 251 Q 251 (263)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=397.48 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=177.4
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 817 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 359999999999999999999999999999999999999999999999999999887664
Q ss_pred hhceEEEcCCCccccc-cHhhccccC---C---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPF---S---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQ 885 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~~LSgGq 885 (1128)
|+.|+||||+|.+|.. ||++|+.+. . ....+ ++.++++.+ |+.... .....+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4569999999999976 999998531 1 22222 233333333 333322 45567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~ 963 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+..||||++|++|++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998753 89999999999976569999999999999999887
Q ss_pred HHh
Q 001189 964 ELL 966 (1128)
Q Consensus 964 ~l~ 966 (1128)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=395.05 Aligned_cols=223 Identities=29% Similarity=0.466 Sum_probs=197.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..|
T Consensus 7 ~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 5999999999942 1357999999999999999999999999999999999999998875422 23459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|+||+|.+|+.||+|||.++.+ .+.+++.++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998753 45677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc-chHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 343 (1128)
++|||||||+||+.+++.+++.+... .+|+|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|..++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 99999999999999999999866544 468999999999999888999999999999999999999876 556665543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=415.25 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=185.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC--ChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--GLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~--~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 3799999999999999999999999999999999999999999999999998321 22235678
Q ss_pred eEEEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
||||||++.+|.. ||++|+.+... .. .+++.++++.+++.+ .......+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------LAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999999975 99999976422 11 234555566555443 33444468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+.+|++||||||||+||+.++..+++.|.+.. .+.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776643 48999999999999987 9999999999999999999999876
Q ss_pred CCchH
Q 001189 970 GSSFS 974 (1128)
Q Consensus 970 ~~~~~ 974 (1128)
...|.
T Consensus 231 ~~~~~ 235 (359)
T 3fvq_A 231 ADLDA 235 (359)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 55443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=403.72 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999964 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHhhccccCCC-----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFSE-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~~-----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|+||++.+ |..||++|+.+... ...+++.++++.+++.+ .......+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999977 56699999965321 12344556666655433 233334579999999999999999
Q ss_pred c------CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 897 R------RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 897 ~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+ +|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998753 4699999999999987 99999999999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=416.70 Aligned_cols=217 Identities=23% Similarity=0.339 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 3899999999964 3799999999999999999999999999999999999999999999999999887764 46799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||+||+.+.. .... +++.++++.++ ++........+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----------LAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTT-----------CGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhHCCHHHHHHHHHHHH
Confidence 99999999976 9999997531 2222 23444455444 4444445556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|+|||||||||+||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||+||++|+|++.|+|+++...+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 9999999999999999999999999999998753 8999999999999987 999999999999999999999987665
Q ss_pred chH
Q 001189 972 SFS 974 (1128)
Q Consensus 972 ~~~ 974 (1128)
.|.
T Consensus 228 ~~v 230 (381)
T 3rlf_A 228 RFV 230 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=398.42 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----------C
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----------F 812 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----------~ 812 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 3999999999964 369999999999999999999999999999999999999999999999999862 3
Q ss_pred Ch---HHhhhceEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 813 GL---MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 813 ~~---~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+. ..+|++|+||||++.+|.. ||++|+.+. ..... +++.++++.+++.+.+ ......+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~ 153 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVH 153 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCccc
Confidence 33 3467889999999998876 999999652 11222 2344445554443330 4444568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999986 99999999999999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++...+
T Consensus 234 ~g~~~~~~~~~ 244 (262)
T 1b0u_A 234 EGDPEQVFGNP 244 (262)
T ss_dssp EECHHHHHHSC
T ss_pred eCCHHHHHhCc
Confidence 99999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=394.06 Aligned_cols=223 Identities=28% Similarity=0.463 Sum_probs=195.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|.+.. ++..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999743235799999999999999999999999999999999999987 554321 23569
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|+||+|.+|+.||+|||.++.. .+.+++.++++.+++.+.++.+|++.+|.+++++.+|||||||||+|||||+.+|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998753 34567788889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+|||||||++||+.+++.+++.+... .+++|+|+|||+++.+..||+|++|++|++++.|+++++......|..++.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l-~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 99999999999999999998865443 458999999999999888999999999999999999998876666665543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=396.05 Aligned_cols=213 Identities=25% Similarity=0.422 Sum_probs=184.1
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999964 379999999999999999999999999999999999999999999999999976 456678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|.. |+++|+.++. .... +++.++++.++ ++........+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG-----------LGEKIKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----------CGGGGGSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHHHHH
Confidence 999999998876 9999997531 1122 23444444444 434444455689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999875 47999999999999988 999999999999999999998753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=394.96 Aligned_cols=220 Identities=26% Similarity=0.480 Sum_probs=196.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999876432 245699
Q ss_pred EEecCCCCCcccHHHHHhcC-C-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFG-S-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g-~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+||+|.+|+.||+|||.++ . ..+.+++.++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999987 3 345677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
+|||||||++||+.+++.+++.+.... +|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999998665443 6899999999999888899999999999999999999877655555554
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=410.24 Aligned_cols=215 Identities=22% Similarity=0.378 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 899999999964 3699999999999999999999999999999999999999999999999999887753 578999
Q ss_pred EcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|||++.+|.. ||++|+.+... .. ++++.++++.+++.++ ......+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-----------LDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 99999976422 11 2345555555554433 3344468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 999999999999999999999999999988653 7899999999999876 9999999999999999999998776543
Q ss_pred h
Q 001189 973 F 973 (1128)
Q Consensus 973 ~ 973 (1128)
|
T Consensus 229 ~ 229 (359)
T 2yyz_A 229 F 229 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=395.31 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=182.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-Hhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i 821 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.|
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999876643 357789
Q ss_pred EEEcCCCcccc-ccHhhccccCCC----------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~~----------------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
+|+||++.+|. .||+||+.+... ....+. ...+.+.++.+ |++........+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999998886 499999965311 111111 11233444443 5666666667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999998864 47999999999999876 999999999999999999
Q ss_pred hHH
Q 001189 963 EEL 965 (1128)
Q Consensus 963 ~~l 965 (1128)
+++
T Consensus 238 ~~~ 240 (257)
T 1g6h_A 238 EEE 240 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=395.25 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++||+++|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999996222 3699999999999999999999999999999999999999999999999998642 67888
Q ss_pred eEEEcCCC--ccccccHhhccccCCC------CCHHHHHHHHHHhcHH--HHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFSE------HSDADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~~------~~~~~i~~~l~~~~l~--~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+|+||+| .++..|+++|+.+... ...+++.++++.+++. ++..+ ...+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHH
Confidence 99999997 4567799999975321 1245567777776665 44433 33579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999987 999999999999999999998765
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=409.51 Aligned_cols=217 Identities=28% Similarity=0.447 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEe-CCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRY-RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y-~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
..|+++|++++| +. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .|+.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 53 369999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+||||++.+|.. ||++|+.+.. ... ++++.++++..++. ........+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-----------SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCCcccCCHHHHHHHHHH
Confidence 9999999999975 9999997531 122 23344555554443 334444468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+.+|+|||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988653 7999999999999877 9999999999999999999998766
Q ss_pred CCch
Q 001189 970 GSSF 973 (1128)
Q Consensus 970 ~~~~ 973 (1128)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 5433
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=389.33 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=175.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh-
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR- 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r- 818 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999964 37999999999999999999999999999999999999999999999999998877543 34
Q ss_pred hceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|.. |++||+.+.. .... +++.++++.+ |++........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 679999999998865 9999996421 1111 2233334433 4444444555689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 4799999999999885599999999999999886
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=410.05 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|+|
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp EEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 899999999964 3699999999999999999999999999999999999999999999999999887753 578999
Q ss_pred EcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|||++.+|.. ||++|+.+.. .... +++.++++.+++. ........+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997531 1222 2344555554443 333444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~ 228 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYK 228 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccch
Confidence 999999999999999999999999999988653 7999999999999876 9999999999999999999998766543
Q ss_pred h
Q 001189 973 F 973 (1128)
Q Consensus 973 ~ 973 (1128)
|
T Consensus 229 ~ 229 (362)
T 2it1_A 229 F 229 (362)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=392.83 Aligned_cols=226 Identities=26% Similarity=0.412 Sum_probs=195.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++|++|+|+...++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996422357999999999999999999999999999999999999998875432 1345
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-FEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
|+||||+|.+|+.||+|||.++.. ... ++..++++..++.+.++.+|.|+.+.+++.+.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999999753 222 455666777888889999998888888999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
|++||||||||+||+.+++.+++.+..... .|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999986654332 4899999999999988899999999999999999999987766676654
Q ss_pred H
Q 001189 343 E 343 (1128)
Q Consensus 343 ~ 343 (1128)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=408.82 Aligned_cols=216 Identities=21% Similarity=0.349 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 3999999999964 3699999999999999999999999999999999999999999999999999887753 57899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||++|+.+... ...+ ++.++++.++ ++........+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----------IEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTT-----------CGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976432 2222 3444555544 4444445557899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999876 999999999999999999999877654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=388.58 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=178.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 35778999
Q ss_pred EcCCCccccc-cHhhccccCCCC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|.. |++||+.+.... . ++++.++++.. |++........+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 999999764322 1 12233344433 44444445556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+.. ||||++|++|++++.|+++++++..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988743 7999999999999876 9999999999999999999998654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=405.53 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=185.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .|++|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCccccc-cHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|||++.+|.. ||++|+.+.. ...++++.++++..++.++ ......+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997531 1122456666666555433 3334468999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++++.. ||||++|++|++++.|+|+++.+++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999998864 37999999999999877 99999999999999999999987765444
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=409.32 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=184.7
Q ss_pred EEEEEEEEEeCCCCCC--ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhh
Q 001189 744 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~--~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r 818 (1128)
|+++|++++|+. .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 899999999964 36 999999999999999999999999999999999999999999999999986521 22357
Q ss_pred hceEEEcCCCccccc-cHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+||||++.+|.. ||++|+.+... ... +++.++++..++.+ .......+||||||||++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHH
Confidence 789999999999976 99999976322 222 33455555554443 334444689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++||||||||+||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 7999999999999877 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 231 ~p~~~~ 236 (353)
T 1oxx_K 231 NPVSIQ 236 (353)
T ss_dssp SCSSHH
T ss_pred CcccHH
Confidence 665443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=399.13 Aligned_cols=212 Identities=22% Similarity=0.327 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 36999999999999999999999999999999999999999999999999987 6777778899
Q ss_pred eEEEcCCCcc-ccc--cHhhccccCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 821 LGIIPQSPVL-FSG--TVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 821 i~~v~Q~~~l-f~~--Tv~~nl~~~~~--------~~~---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
|+|+||++.+ |.. |++||+.+... ..+ +++.++++.. |++........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHH
Confidence 9999999864 444 99999975321 111 1233333333 444445555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEE--EEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tv--i~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|| |+|||+++.+.. ||+|++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988653 7899 999999999876 999999999999999999
Q ss_pred hHHhh
Q 001189 963 EELLS 967 (1128)
Q Consensus 963 ~~l~~ 967 (1128)
+++.+
T Consensus 248 ~~~~~ 252 (279)
T 2ihy_A 248 EDILT 252 (279)
T ss_dssp HHHCS
T ss_pred HHHhc
Confidence 99864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=408.37 Aligned_cols=216 Identities=20% Similarity=0.339 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC------CChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~------~~~~~ 816 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999964 369999999999999999999999999999999999999999999999999876 554
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+++||||||++.+|.. ||++|+.+.. .... +++.++++.+++. ........+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCCcccCCHHHHHH
Confidence 35789999999999965 9999997531 1222 2344555554443 33344446899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+.+|+|||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999877 999999999999999999999
Q ss_pred hhcCCCch
Q 001189 966 LSNEGSSF 973 (1128)
Q Consensus 966 ~~~~~~~~ 973 (1128)
..++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 87765444
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=385.78 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 4899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEcCCCccccc-cHhhccccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~--~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.+|.. |++||+.+... ..++++.++++..++. ........+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-----------GGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998865 99999976431 1355566666665543 3334445689999999999999999999
Q ss_pred C-------EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 K-------ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~-------iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+ +|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999874 57899999999999866 99999999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=393.69 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=175.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||++.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 3699999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|.+|+++|+. .....+..+.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999997 323344556677788899999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||||++||+.++..+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|++++++.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 44446899999999999987899999999999999999999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=385.87 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999964 3799999999999999999999999999999999999 89999999999999988877665 456
Q ss_pred eEEEcCCCccccc-cHhhccccCC----C--CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCC-CChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----E--HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN-FSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~--~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~-LSgGqrqrl~l 891 (1128)
++|+||+|.+|.+ |+++|+.+.. . ....+.. ..+.+.++.+ |++ ........+ ||||||||++|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHH
Confidence 9999999999876 9999986421 0 1111111 1122233332 442 223333456 99999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhH
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~ 964 (1128)
||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999875 47899999999999987 59999999999999999873
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=401.68 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=193.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|.+.. +++.
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999963 24689999999999999999999999999999999999987 6654321 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
||||+|++.+|..||+||+.+......+++.++++.+++.+.++..|..+++.++++|.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998665667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+||||||||+||+..++.+.+.+.. ..+++|+|+|||+++.+..||||++|++|+|++.|+++++....
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~-~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHT-TTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-HhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999876543 44689999999999988889999999999999999999998763
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=384.59 Aligned_cols=232 Identities=34% Similarity=0.621 Sum_probs=180.6
Q ss_pred HHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 95 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 95 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
|+.++++.+.+... ........+.++++|++|.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp HHHHHHHHCC------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred HHHHHhcccccccc-cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67777765442111 11111223469999999853 4799999999999999999999999999999999999999
Q ss_pred CCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 175 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 175 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++|. +.+.++|+|+||++.+|+.||+|||. +......++.++++.+++.+.++.+|.++++.+++.+.+||||||||+
T Consensus 91 ~~G~-I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 91 SEGK-IKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEE-EECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred CCcE-EEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 8764 55677899999999999889999998 644445556677888899988999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+|||||+.+|+++||||||++||+.+++.+++.++....+|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99999999999999999999999999999987544333458999999999999888999999999999999999988653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=380.97 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++|++++|+.. ..++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1369999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCCccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 G-IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~-~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+ |+||+|.+ ..|+++|+.++. ...++++.++++.. |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999997532 22344455555543 454 5555666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cC-EEEEEeCCEEEEecChhHHhhc
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CD-RILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D-~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
++|++|||||||++||+.+++.+.+.|++..+ |||+|||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998644 99999999999876 99 9999999999999999999753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=383.20 Aligned_cols=215 Identities=19% Similarity=0.291 Sum_probs=177.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~ 819 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |+
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4999999999953 3799999999999999999999999999999999999 57999999999999988776665 44
Q ss_pred ceEEEcCCCccccc-cHhhccccCC----------CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCC-CCChhHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS----------EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGE-NFSVGQR 886 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~----------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~-~LSgGqr 886 (1128)
.|+|+||+|.+|.. |+++|+.... ..+..+.. ..+.+.++. .|+++. ...... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIAL--LKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHH--TTCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHH--cCCChhHhcCCcccCCCHHHH
Confidence 69999999998876 8999885310 01121111 112334444 355432 233333 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~ 963 (1128)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999875 37899999999999876 8999999999999999998
Q ss_pred HHh
Q 001189 964 ELL 966 (1128)
Q Consensus 964 ~l~ 966 (1128)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=377.91 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=169.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|+
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999622 4799999999999999999999999999999999999999999998 356799
Q ss_pred EEcCCCccc-cccHhhccccCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLF-SGTVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf-~~Tv~~nl~~~~~--------~~~---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+| ..|+++|+.+... ... +++.++++..+ ++........+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN-----------LTHLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcC-----------ChHHhcCChhhCCHHHHHHHH
Confidence 999999887 5599999975321 111 23444444444 444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999998753 7999999999999876 99999999999 99999999864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.18 Aligned_cols=207 Identities=25% Similarity=0.423 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. .+++|+||||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 6999999999963 246999999999999999999999999999999999999998875421 234
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.||||+|+| .+|..||+|||.|+. ..+. +++.++++.+++.+..+ ....+|||||||||+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHH
Confidence 699999997 467899999998762 1222 34566677777654333 234689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++||||||||+||+.+.+.+++.+.+.. .+|+|+|+|||+++++. .||+|++|++|+++++|+++++..
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998665443 34899999999999986 499999999999999999999887
Q ss_pred cchHH
Q 001189 334 NGELF 338 (1128)
Q Consensus 334 ~~~~~ 338 (1128)
+...+
T Consensus 234 ~~~~~ 238 (275)
T 3gfo_A 234 EKEVI 238 (275)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 65433
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=370.33 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=163.1
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee----------------
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 182 (1128)
++++|++|+|+.+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..-
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999998754320
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC------CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGS------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
+..||||+|+|.++. .||+||+.++. .... +++.++++.+++.+.. ......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 125999999999875 59999998741 1222 2334455555553321 1334578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|||+|||||+.+|++||||||||+||+.+.+.+++.+.+...+ |+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999999866554333 899999999999877899999999999999887665
Q ss_pred H
Q 001189 331 L 331 (1128)
Q Consensus 331 l 331 (1128)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=385.25 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=174.5
Q ss_pred CCcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------
Q 001189 117 LPAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 181 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 181 (1128)
.+.|+++|++++|+.+. ..++|+||||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 35799999999997432 246999999999999999999999999999999999999999875432
Q ss_pred -ecCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..||||+|++.++ ..||+|||.++. ..+ .+++.++++.++|.+..+..| .+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHH
Confidence 245799999999887 569999998752 122 234666777777765444433 589999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||+|||||+.+|++||||||||+||+.+.+.+++.+.+... .|.|+|+|||+++.+.. ||||++|++|+++++|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999986655433 48999999999999865 99999999999999999999
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+..+.
T Consensus 251 v~~~p 255 (366)
T 3tui_C 251 VFSHP 255 (366)
T ss_dssp HHSSC
T ss_pred HHhCC
Confidence 88653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=379.54 Aligned_cols=203 Identities=28% Similarity=0.455 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5899999999963 57999999999999999999999999999999999999999875421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.||||+|++.+| ..||+|||.|+... . .+++.++++.++|.+..+..| .+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 699999999988 57999999997431 1 245667777777765544443 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++||||||||+||+..++.+.+.+.+.. ..|.|+|+|||+++++. .||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999987665543 35899999999998875 5999999999999999999998766
Q ss_pred c
Q 001189 335 G 335 (1128)
Q Consensus 335 ~ 335 (1128)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=359.13 Aligned_cols=194 Identities=21% Similarity=0.350 Sum_probs=164.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..|+.|
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 35999999999953 6999999999999999999999999999999999999999999999999986 367889
Q ss_pred EEEcCCCccccc-cHhhccccCC-----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~-----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|+||+|.+|.. |+++|+.++. ...++++.++++.. |++.. +....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998876 9999996421 11234455555543 44444 555678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998865 47899999999999988 77765 445555
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=365.08 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999952 57999999999999999999999999999999999999998875422 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|+||+|++.+|. .||+||+.++. ... .+++.++++..++.+..+ ....+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 5999999998875 59999998742 122 234556666666654332 334689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999866554445899999999999986 5899999999999999999888654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=359.55 Aligned_cols=202 Identities=23% Similarity=0.375 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 57999999999999999999999999999999999999998875422 1235
Q ss_pred EEEEecCCCCCcc-cHHHHHhcCC-C-CCH----HHHHHHHHHhC-cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIFNA-TVRDNILFGS-A-FEP----ARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~~~-Tv~eni~~g~-~-~~~----~~~~~~~~~~~-l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|+|+||++.+|.. ||+||+.++. . .+. +++.++++..+ +.+ ..+....+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999998864 9999999863 1 111 22333333331 221 23445678999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999866554346899999999998764 6999999999999999999888654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=363.17 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCC--CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~ 187 (1128)
.++++|++|+|+.+.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 4789999999962111 46999999999999999999999999999999999999998875432 245699
Q ss_pred EEecCC--CCCcccHHHHHhcCCC------CCHHHHHHHHHHhCcH--HHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 188 YVPQVS--WIFNATVRDNILFGSA------FEPARYEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 188 ~v~Q~~--~l~~~Tv~eni~~g~~------~~~~~~~~~~~~~~l~--~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|++|+| .++..||+||+.++.. ...+++.++++..++. +..+..| .+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHHHH
Confidence 999996 4578899999998632 1245677888888887 5554443 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998665543458999999999999875 999999999999999998887643
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=380.94 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=172.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.|+++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|||
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 57999999999999999999999999999999999999999875432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+. ..+. +++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHHH
Confidence 99999998 569999999862 2222 45666777777765444433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+++.+.+... .|.|+|+|||+++++. .||||++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999887655433 3899999999998865 59999999999999999999987653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=364.37 Aligned_cols=202 Identities=28% Similarity=0.420 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 5999999999952 57999999999999999999999999999999999999998875421
Q ss_pred --------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHH-HhcCCCCCcccccCCC
Q 001189 182 --------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHD-LDLLPGGDVTEIGERG 243 (1128)
Q Consensus 182 --------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~-~~~l~~g~~t~vg~~g 243 (1128)
.+..||||+|++.+|. .||+||+.++. ... .+++.++++..++.+. .+.. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 1235999999998875 59999998742 122 2345667777777665 4433 3
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeE
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 322 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i 322 (1128)
.+|||||||||+|||||+.+|++||||||||+||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999866544445899999999999986 5999999999999
Q ss_pred eeecChhHHhhc
Q 001189 323 KEEGTFEDLSNN 334 (1128)
Q Consensus 323 ~~~g~~~~l~~~ 334 (1128)
++.|+++++...
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999988654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=361.95 Aligned_cols=201 Identities=26% Similarity=0.363 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCC-c
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-N 197 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~ 197 (1128)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. ++..|+|+||++.++ .
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EeccEEEEcCCCccCCC
Confidence 4899999999962 25799999999999999999999999999999999999999987665 667899999999886 7
Q ss_pred ccHHHHHhcCCC--------CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 198 ATVRDNILFGSA--------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 198 ~Tv~eni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
.||+||+.++.. .. .+++.++++..++.+..+ ....+|||||||||+|||||+.+|++
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 899999998631 11 234566667666654332 23468999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||||++||+.+++.+++.+.....+ |+|+|++||+++.+. .||+|++|++|+ ++.|+++++...
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999866554444 899999999999884 699999999999 999999888643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=361.16 Aligned_cols=203 Identities=24% Similarity=0.397 Sum_probs=170.1
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCc
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 185 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 185 (1128)
.+.|+++|++++|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 13 ~~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CCeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 35799999999995 257999999999999999999999999999999999999998875432 2346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|||+||++.++. .||+||+.++. .... +++.++++..++.+..+ ....+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999998875 59999998742 1222 34556677777654433 23468999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999998665544468999999999999876 89999999999999999888753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.79 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I------------ 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~------------ 182 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 5899999999963 57999999999999999999999999999999999999998875422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+..|+|++|++.++ ..||+||+.++. ... .+++.++++..++.+.. .....+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 14599999999887 469999998752 111 23345555655554322 234468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
+|||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999866554445899999999999887799999999999998875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=362.67 Aligned_cols=198 Identities=20% Similarity=0.358 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 57999999999999999999999999999999999999998875422 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC----------------C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAF----------------E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~----------------~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~ 244 (1128)
|+|++|++.++ ..||+||+.++... + .+++.++++..++.+. ......
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCch
Confidence 99999999887 57999999886311 1 1234445555554432 234456
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.+...+|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999866554445899999999999876 58999999999999
Q ss_pred eecChhH
Q 001189 324 EEGTFED 330 (1128)
Q Consensus 324 ~~g~~~~ 330 (1128)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=363.52 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=170.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 46999999999963 57999999999999999999999999999999999999999875432 1234
Q ss_pred EEEEecCCCC-CcccHHHHHhcCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 186 VAYVPQVSWI-FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 186 i~~v~Q~~~l-~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
++|++|++.+ +..||+||+.++.. ...++..++++.+++.+..+ ....+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999887 57899999998742 12345666777776643222 2335899999999999999
Q ss_pred Hcc------CCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 260 VYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 260 l~~------~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+. +|++||||||||+||+.+.+.+++.+.+... .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 9999999999999999999999986654433 3579999999999976 5999999999999999999998
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 236 ~~~ 238 (266)
T 4g1u_C 236 LNA 238 (266)
T ss_dssp CCH
T ss_pred hCc
Confidence 754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=374.11 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=173.2
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcE
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 186 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 186 (1128)
.+.++++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|.+.. .++.|
T Consensus 12 ~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 346999999999931 357999999999999999999999999999999999999999875432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||+|++.+| ..||+|||.|+. ..+ .+++.++++..++.+..+..| .+|||||||||+|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999999987 469999999862 122 245666777777765544433 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999886655433 3899999999999875 59999999999999999999987653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.75 Aligned_cols=203 Identities=27% Similarity=0.337 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 4899999999952 57999999999999999999999999999999999999999875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+... . .+++.++++..+|.+..+..| .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999988 56999999987432 1 245677788888766554443 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999887655433 3899999999999874 69999999999999999999987653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=371.70 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCCC--ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~--~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.++++|++++|+. ++ +|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999963 56 999999999999999999999999999999999999999875421
Q ss_pred ecCcEEEEecCCCCCc-ccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 182 IRGTVAYVPQVSWIFN-ATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~-~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.++.||||+|++.+|. .||+|||.|+... . .+++.++++..+|.+..+..| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 1346999999999884 6999999987431 2 245666777777765544433 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+|||||+.+|++||||||||+||+..++.+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999887655433 3899999999999875 5999999999999999999998
Q ss_pred hhcc
Q 001189 332 SNNG 335 (1128)
Q Consensus 332 ~~~~ 335 (1128)
..+.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=372.23 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 5999999999962 57999999999999999999999999999999999999999875432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+.. ... +++.++++..+|.+..+..| .+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999987 5799999999743 222 34666777777765554444 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+.+.+.+...+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999998876554333 899999999998864 69999999999999999999987653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=372.76 Aligned_cols=202 Identities=29% Similarity=0.376 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+ ++++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 257999999999999999999999999999999999999999875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+. ... .+++.++++..++.+..+. ...+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999988 469999999862 122 2345566676666543333 3358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999887655433 3899999999998864 6999999999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=353.36 Aligned_cols=198 Identities=23% Similarity=0.354 Sum_probs=163.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +|+|+||++++ ++++|+||||||||||+++|+|+++|++|.+.. .+..|||+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 689999999952 59999999999 999999999999999999999999998875432 13469999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 190 PQVSWIFN-ATVRDNILFGSAF-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
||++.++. .||+||+.++... . .+++.++++..++.+.. .....+||||||||++|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998875 5999999987432 1 23344555555554322 233468999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+++||||||++||+.+++.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999986654433 3899999999999875 5999999999999999999887643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=369.46 Aligned_cols=201 Identities=28% Similarity=0.394 Sum_probs=170.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+ ++ +|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.||||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 25 999999999999999999999999999999999999999875432 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 190 PQVSWIFN-ATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+|++.+|. .||+|||.|+.. ...+++.++++..+|.+..+.. ..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHcCC
Confidence 99999985 699999998621 1225677777777776544333 3589999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++||||||||+||+..++.+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999887655433 4899999999998864 59999999999999999999987653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=361.05 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 183 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 183 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 36999999999963 57999999999999999999999999999999999999998875421 13
Q ss_pred CcEEEEecCCCC-Ccc--cHHHHHhcCCC--------CCH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 184 GTVAYVPQVSWI-FNA--TVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 184 ~~i~~v~Q~~~l-~~~--Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
..|+|++|++.+ +.. ||+|||.++.. ... +++.++++..++.+.. .....+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 469999999865 444 99999998631 122 2345556666654332 2344689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEE--EEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR--VLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tv--ilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||+|||||+.+|++|||||||++||+.+++.+++.+.....+|+|+ |+|||+++.+. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999998665443348899 99999999875 58999999999999999
Q ss_pred ChhHHhhc
Q 001189 327 TFEDLSNN 334 (1128)
Q Consensus 327 ~~~~l~~~ 334 (1128)
+++++...
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99888643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=370.70 Aligned_cols=202 Identities=24% Similarity=0.389 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999952 57999999999999999999999999999999999999999875421 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++.||||+|++.+| ..||+|||.|+. ... .+++.++++..+|.+..+..| .+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHHH
Confidence 24699999999987 579999999862 122 234566777777765444333 58999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+|||||+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999886655433 3899999999999875 59999999999999999999987
Q ss_pred hc
Q 001189 333 NN 334 (1128)
Q Consensus 333 ~~ 334 (1128)
.+
T Consensus 229 ~~ 230 (372)
T 1g29_1 229 DK 230 (372)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=350.41 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+ ++|+|+||++++|++++|+||||||||||+++|+|+++|+ |.+.. ++..|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999985 5899999999999999999999999999999999999998 75432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+|++|++.++. .||+||+.++.. .+.+++.++++..++.+..+ ....+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998874 699999998742 13566777888877765432 33468999999999999999999
Q ss_pred CC-------EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhh
Q 001189 264 SD-------VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 264 ~~-------illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+ +|||||||++||+.+.+.+++.+.....+|+|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999999999986655444589999999999998 4699999999999999999988865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=344.47 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCcee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~-------------~~ 183 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+ ++|++|.+.. .+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 4899999999962 5799999999999999999999999999999999998 7787765422 12
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCC------CCC----HHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCC-CChHH
Q 001189 184 GTVAYVPQVSWIFN-ATVRDNILFGS------AFE----PARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVN-ISGGQ 250 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~----~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~-LSGGQ 250 (1128)
..++|++|+|.+|. .||+||+.++. ... .+++.++++..++. +..+. ...+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-----------YLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-----------BTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-----------CcccCCCHHH
Confidence 34899999999875 69999997642 111 12344555555552 22222 2245 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc--CCEEEEEeCCeEeeecCh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g~~ 328 (1128)
||||+|||||+.+|+++|||||||+||+.+++.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999998665443468999999999999875 599999999999999998
Q ss_pred hH
Q 001189 329 ED 330 (1128)
Q Consensus 329 ~~ 330 (1128)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=346.95 Aligned_cols=197 Identities=23% Similarity=0.298 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEE-E
Q 001189 120 ISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA-Y 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~-~ 188 (1128)
++++|++++|+.. ..+++|+++||+++ |++++|+||||||||||+++|+|++ |++|.+.. .+..|+ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999631 01479999999999 9999999999999999999999999 98875432 134699 9
Q ss_pred EecCCCCCcccHHHHHhcCC---CCCHHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 189 VPQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+||++.+ ..||+||+.++. ..+.+++.++++..++. +. .+....+||||||||++|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 999999998752 23456666777776665 32 33445689999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCC-EEEEEeCCeEeeecChhHHhh
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVD-RIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d-~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
++|||||||++||+.+++++++.+... . . |+|++||+++++. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~-~-~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEY-G-K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHS-C-S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh-c-C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999865433 2 2 9999999999875 589 999999999999999988754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=346.21 Aligned_cols=202 Identities=19% Similarity=0.258 Sum_probs=159.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCcee----e---------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV----I--------- 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~----~--------- 182 (1128)
+.++++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|.+.. +
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 4699999999995 35799999999999999999999999999999999998 4677665422 0
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC----------CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCC-CC
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS----------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NI 246 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~----------~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~-~L 246 (1128)
+..|+|++|+|.++ ..|++||+.++. ..+. +++.++++..++... ....... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCC
Confidence 12399999999887 459999986531 0122 223344444443211 1112223 59
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc--CCEEEEEeCCeEee
Q 001189 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKE 324 (1128)
Q Consensus 247 SGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~ 324 (1128)
||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998665444458999999999999875 79999999999999
Q ss_pred ecChhHHh
Q 001189 325 EGTFEDLS 332 (1128)
Q Consensus 325 ~g~~~~l~ 332 (1128)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.18 Aligned_cols=188 Identities=18% Similarity=0.318 Sum_probs=152.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEe
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 190 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 190 (1128)
..++++|++++|+ + ++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|+|
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 3699999999995 2 6999999999999999999999999999999999999998875432 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCC-----CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 191 QVSWIFN-ATVRDNILFGS-----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 191 Q~~~l~~-~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|+|.+|. .||+||+.++. ..+.+++.++++..++.+ . +....+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999875 59999998752 122455666666655432 2 3445789999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999998665443358999999999999876 46655 445554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-35 Score=353.55 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=120.7
Q ss_pred EEEEEEEEEeCCCCCCceeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
++.+++++.|+. |+.+ +..|++|++++|+|+||||||||++.++|...|. |. +.+.
T Consensus 258 ~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 344566655531 3322 4489999999999999999999999999998885 53 1144
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+++|++. .+++.+...+. .+ + .++.. .|+..........|||||+||+++||++..+|++|
T Consensus 315 ~~~ee~~---~~l~~~~~~~g-~~---~---------~~~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll 375 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG-MD---F---------EEMER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS-CC---H---------HHHHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeCCH---HHHHHHHHHcC-CC---H---------HHHHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 5566652 13333321111 11 1 11111 22222233334579999999999999999999999
Q ss_pred EEeccccCCCHH-----HHHHHHHHHHHHc-CCcEEEEeecCc----------hhhhh-cCEEEEEeCCE
Q 001189 903 VLDEATAAVDVR-----TDALIQKTIREEF-KSCTMLIIAHRL----------NTIID-CDRILLLDSGR 955 (1128)
Q Consensus 903 lLDEpTs~lD~~-----t~~~i~~~l~~~~-~~~Tvi~vtH~l----------~~~~~-~D~i~vl~~G~ 955 (1128)
||| ||++||.. ..+.+.+.++.+. .++|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999 99999998 8888888887754 579999999998 66766 99999999887
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=332.33 Aligned_cols=200 Identities=21% Similarity=0.241 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
..++++|+++.|+. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. +..|||+||++.+ +
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEY 430 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCCEEEECSSCCCCC
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeEEEEEecCccCCC
Confidence 36899999999952 4799999999999999999999999999999999999999876543 6679999999876 5
Q ss_pred cccHHHHHhcC-C-CC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG-S-AF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g-~-~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
+.||.||+... . .+ +.++..++++..++.+. ......+|||||||||+|||||+.+|++|||||||
T Consensus 431 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 431 EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 78999998753 1 01 12333444444444321 22334689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHhh
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 333 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 333 (1128)
++||+.+.+.+++.+.... ..|+|+|+|||+++++.. ||+|++|++ |++...|+++++..
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999988654432 358999999999999874 899999986 88888899888764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=329.95 Aligned_cols=200 Identities=20% Similarity=0.232 Sum_probs=161.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
+.++++|+++.|.. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+. ++..|+|+||++.. +
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE-WDLTVAYKPQYIKADY 360 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC-CCCCEEEECSSCCCCC
T ss_pred eEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECceEEEEecCCcCCC
Confidence 46899999999952 479999999999999999999999999999999999999987655 36679999999876 5
Q ss_pred cccHHHHHhcC-C-C-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG-S-A-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g-~-~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
+.||.||+... . . .+.++..++++..++.+ .......+|||||||||+|||||+.+|++|||||||
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 78999988642 1 0 11222333333333322 223445689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeC--CeEeeecChhHHhh
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHE--GMVKEEGTFEDLSN 333 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~~~g~~~~l~~ 333 (1128)
++||+.+.+.+++.+.... ..|+|+|+|||+++++. .||+|++|++ |++...|+++++..
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999998654433 34899999999999987 4899999986 78888899887754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=332.77 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=161.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+...|++++|++ .++|+|+||+|++||++||+||||||||||+++|.| |+| +|.+... +.+++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 5888899999964 369999999999999999999999999999999995 554 5544321 12478
Q ss_pred EEcCCC-ccc-cccHhhcccc-CCCCCHHHHHHHHHHhcH-HHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSP-VLF-SGTVRFNLDP-FSEHSDADLWEALERAHL-KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~-~lf-~~Tv~~nl~~-~~~~~~~~i~~~l~~~~l-~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|++|++ .++ ..|+.+|+.. .... ++++.++++..++ .+...+ ...+||||||||++|||||+.+
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999986 444 4599999864 1111 5667777777766 333332 2357999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+.+.+.+.|++ .++|+|+|||+++++.. ||+|++|++|+++ ..|++++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999998 68999999999999987 9999999999997 5799999874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-32 Score=325.06 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=161.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
+.++++|+++.|+. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+......++|+||++.. +
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 35889999999962 578899999999999999999999999999999999999998876666679999999765 5
Q ss_pred cccHHHHHhcCCC----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc
Q 001189 197 NATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272 (1128)
Q Consensus 197 ~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp 272 (1128)
..||+||+.+... .......++++..++.+. ......+|||||||||+|||||+.+|+|||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7899999976321 122334444555554432 2334468999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHh
Q 001189 273 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLS 332 (1128)
Q Consensus 273 ts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~ 332 (1128)
|++||+.+...+++.+.... ..|+|+|+||||++++.. ||||++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999988655443 358999999999999875 999999986 5556666665543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=335.09 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=138.1
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHH---------------------HHHhcCCCCC-------CceEEECCEec
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------------------NTLFRIVELE-------RGRILIDGFDI 809 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll---------------------~~l~g~~~p~-------~G~I~i~g~~i 809 (1128)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3699999999999999999999999999998 8899999998 55666776655
Q ss_pred CCCChHHhhhceEEEcCCCccc--------------------cccHhhccccCCCC--C--HHH-----HHHHHHHhcHH
Q 001189 810 AKFGLMDLRKILGIIPQSPVLF--------------------SGTVRFNLDPFSEH--S--DAD-----LWEALERAHLK 860 (1128)
Q Consensus 810 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~Tv~~nl~~~~~~--~--~~~-----i~~~l~~~~l~ 860 (1128)
... .|+.+++++|.+.++ ..|+++|+.++... . +.+ ..++++..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 432 244566666654332 34889998754211 1 111 11111111
Q ss_pred HHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEee
Q 001189 861 DAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIA 936 (1128)
Q Consensus 861 ~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vt 936 (1128)
+.++.+ |++.. ......+||||||||++|||||+.+|+ ||||||||++||+.+...+.+.|+++. +++|||+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123332 44322 234456799999999999999999988 999999999999999999999998864 579999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCC
Q 001189 937 HRLNTIIDCDRILLL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
|+++.+..||||++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999988889999999 8999999999999987654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=323.13 Aligned_cols=198 Identities=22% Similarity=0.305 Sum_probs=161.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCC-----CEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVG-----SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G-----~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
++++|+|+. .+.+++++||++++| |+++|+||||||||||+++|+|+++|++|.. ..+..++|+||++.. |
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CCSCCEEEECSSCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-ccCCcEEEecccccccC
Confidence 567888863 235899999999998 7899999999999999999999999998863 334569999999764 6
Q ss_pred cccHHHHHhcC---CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG---SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
..||++|+... ...+.+...++++..++.+.. .....+|||||||||+|||||+.+|+||||||||
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 78999998642 122344455566666554322 2344689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHhhc
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSNN 334 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 334 (1128)
++||+.+...+++.+.+.. ..|+|+|+|||+++++.. ||||++|++ |+++..|+++++.+.
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999987654433 358999999999999875 899999986 899999999998764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-34 Score=320.85 Aligned_cols=235 Identities=15% Similarity=0.094 Sum_probs=185.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCC
Q 001189 53 LGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK 132 (1128)
Q Consensus 53 ~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 132 (1128)
..+..+-+.+.+++.+.++ ..|+..+...+..+..+.++..||.++++.+++...+.....+....|+++|++|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--
Confidence 3445566788888877666 4799999999999999999999999999876532211111000012488999999996
Q ss_pred CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHH-HHhcCCCCC
Q 001189 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD-NILFGSAFE 211 (1128)
Q Consensus 133 ~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~e-ni~~g~~~~ 211 (1128)
+++|+++||+|++|++++|+||||||||||+++|+|++ +|.+ ++|++|++++|.+|+++ ||.++...+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~~~ 181 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDDAT 181 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEEEC
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCcccc
Confidence 46999999999999999999999999999999999998 4543 57899999999999998 999874333
Q ss_pred HHHHHHHHHHhCcHHHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 212 PARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+ . +.+.++. +|+|++ |.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 182 ~-~---------~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---- 234 (305)
T 2v9p_A 182 H-A---------CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---- 234 (305)
T ss_dssp H-H---------HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred H-H---------HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence 2 1 2334554 676654 67999999999 999999999999 99999998877641
Q ss_pred cccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 291 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 291 ~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
+||+++.+..||+| +|++|++++.|+++++ .+.|++++
T Consensus 235 ----------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~ 272 (305)
T 2v9p_A 235 ----------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLW 272 (305)
T ss_dssp ----------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHST
T ss_pred ----------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHH
Confidence 29999999999999 9999999999999998 45565554
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-34 Score=317.76 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC-CccEEEEEEEEEeCCCCCCceeeeeEEEcCCc
Q 001189 694 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 694 ~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge 772 (1128)
++..+...+........+.+|+.++++.+.+... ....|+. .+.|+++||+|+|+ .++|+++||+|++|+
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCCC
Confidence 3444444555566677888899888865432110 1112432 24599999999996 379999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh-ccccCCCCCHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLW 851 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~-nl~~~~~~~~~~i~ 851 (1128)
+++|+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++ |+.+....++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~---- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH---- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH----
Confidence 99999999999999999999999 8988 35789999999999998 8876533332
Q ss_pred HHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 852 EALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~-lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
+++++++. +|.|++ |.+|||||||| |||++++|+||| ||+||+.+++.|..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 34566776 788887 67899999999 999999999999 99999999988862
Q ss_pred EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|||++.+..||+| +|++|+|++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 39999999889999 9999999999999999
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=291.72 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=148.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------------------------------------CCCc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--------------------------------------LERG 800 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--------------------------------------p~~G 800 (1128)
.++++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999976653 4578
Q ss_pred eEEECCEecCCCChHHhhhc-eEEEcCCCccccccHhhccccCCCCCH---HHHH-------------------------
Q 001189 801 RILIDGFDIAKFGLMDLRKI-LGIIPQSPVLFSGTVRFNLDPFSEHSD---ADLW------------------------- 851 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Tv~~nl~~~~~~~~---~~i~------------------------- 851 (1128)
++++||.+++..++.+++.. +++++|++.++-.+..++..+...... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999987666777666 899999998775544332221111110 0000
Q ss_pred -------------HHHHH-----------------hcHHHHHHHcc------------------CCcch---hhhcCCCC
Q 001189 852 -------------EALER-----------------AHLKDAIRRNS------------------LGLDA---QVSEAGEN 880 (1128)
Q Consensus 852 -------------~~l~~-----------------~~l~~~i~~lp------------------~Gldt---~v~e~g~~ 880 (1128)
+.+.. ..+.+.+..+. .|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000 00111122211 11111 22333333
Q ss_pred --------CChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEE
Q 001189 881 --------FSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 881 --------LSgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
||||||||++|||+|+.+| +||||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999988877999999
Q ss_pred E----eCCEEEEe
Q 001189 951 L----DSGRVLEY 959 (1128)
Q Consensus 951 l----~~G~i~~~ 959 (1128)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998765
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-31 Score=311.62 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=152.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-e-EEECCEecCCCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-R-ILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 820 (1128)
.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 467777777773 79999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEcCCCcccc----ccHhhccccCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFS----GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~----~Tv~~nl~~~~~~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++++||++.+|. .|+++|+ +.... .++.+.++++. .|++.... ..+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~-----------~gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKN-----------FGLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECC-----------CCSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHH-----------hCCCcccc--hhhhhHHHHHHHHH
Confidence 999999996543 3899898 43221 11111112222 35544443 56799999999999
Q ss_pred HHH--hccCCCE----EEEec-cccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch------hhhh-cCE-----EEEEe
Q 001189 892 SRA--LLRRSKI----LVLDE-ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN------TIID-CDR-----ILLLD 952 (1128)
Q Consensus 892 Ara--ll~~p~i----LlLDE-pTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~------~~~~-~D~-----i~vl~ 952 (1128)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++ .+.|+|+|+|+.+ .+.. ||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 7778887776 3789999999987 5555 999 99999
Q ss_pred -CCEEEEecChhHHh
Q 001189 953 -SGRVLEYDTPEELL 966 (1128)
Q Consensus 953 -~G~i~~~g~~~~l~ 966 (1128)
+|+++ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 99998874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=295.77 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=91.1
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 238 EIGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 238 ~vg~~g~~LSGGQkqRiaLARal~~~~---~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
.+|..+.+|||||||||+|||||+++| +||||||||++||+.+.+.+++.+.+...+|+|+|+|||+++++..||+|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 367788999999999999999999875 79999999999999999999986655445699999999999999999999
Q ss_pred EEE------eCCeEeeecChhHHhhcchHHH
Q 001189 315 ILV------HEGMVKEEGTFEDLSNNGELFQ 339 (1128)
Q Consensus 315 ~~l------~~G~i~~~g~~~~l~~~~~~~~ 339 (1128)
++| ++|+|+++|+++++.++...|.
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred EEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 999 8999999999999988765543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-26 Score=285.94 Aligned_cols=97 Identities=19% Similarity=0.414 Sum_probs=87.1
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 239 IGERGVNISGGQKQRVSMARAVYSN---SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLARal~~~---~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.+....+|||||||||+|||+|+++ |+||||||||++||+...+.+++.+.....+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4667789999999999999999996 7999999999999999999999866554457999999999999998899999
Q ss_pred EE------eCCeEeeecChhHHhhcc
Q 001189 316 LV------HEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 316 ~l------~~G~i~~~g~~~~l~~~~ 335 (1128)
+| ++|+|++.|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=282.35 Aligned_cols=99 Identities=26% Similarity=0.419 Sum_probs=87.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 239 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLARal~~~~---~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.+....+|||||||||+|||+|+.+| ++|||||||++||+...+.+++.+.....+|+|+|+|||+++++..||+|+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 46667899999999999999999875 999999999999999999999866554456999999999999998899999
Q ss_pred EE------eCCeEeeecChhHHhhcchH
Q 001189 316 LV------HEGMVKEEGTFEDLSNNGEL 337 (1128)
Q Consensus 316 ~l------~~G~i~~~g~~~~l~~~~~~ 337 (1128)
+| ++|+|++.|+++++......
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~~ 946 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKES 946 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTTC
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCchh
Confidence 99 68999999999999876443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-28 Score=290.28 Aligned_cols=175 Identities=17% Similarity=0.095 Sum_probs=133.5
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-Cceee----cCcEEEEecCCCCC----cccHHHHHhcCCCC
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-ASAVI----RGTVAYVPQVSWIF----NATVRDNILFGSAF 210 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g-~~~~~----~~~i~~v~Q~~~l~----~~Tv~eni~~g~~~ 210 (1128)
++||++++|++++|+||||||||||+++|+|+++|++| ..+.+ +..++|+||++.+| ..|++||+ |+...
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccc
Confidence 79999999999999999999999999999999999887 62332 45699999998543 35999999 76432
Q ss_pred -----CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-cCCCcCH
Q 001189 211 -----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA--VYSNSDV----FIFDD-PLSALDA 278 (1128)
Q Consensus 211 -----~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa--l~~~~~i----llLDE-pts~LD~ 278 (1128)
+.++..++++..++ .... + ..+|||||||||+|||| |+.+|++ +|||| ||++||+
T Consensus 209 ~~~~~~~~~~~~ll~~~gl-----------~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~ 275 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGL-----------ERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE 275 (460)
T ss_dssp BSSCCSSCCBCCEECCCCS-----------SSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred ccCcchHHHHHHHHHHhCC-----------Cccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence 00111111111221 1111 2 56899999999999999 9999999 99999 9999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCcc------ch-hcCCE-----EEEEe-CCeEeeecChhHHhh
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLH------FL-SQVDR-----IILVH-EGMVKEEGTFEDLSN 333 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~------~l-~~~d~-----i~~l~-~G~i~~~g~~~~l~~ 333 (1128)
. .+.+.+ +++. .++|+|+|||+.. ++ ..||+ |++|+ +|+++ .|+++++.+
T Consensus 276 ~-~~~l~~-l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 276 N-LAELHH-IIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp S-CHHHHH-HHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred h-HHHHHH-HHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9 555544 3332 3689999999987 44 35899 99999 99999 899887743
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-25 Score=249.72 Aligned_cols=202 Identities=17% Similarity=0.218 Sum_probs=139.3
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC----------------------------------------------
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---------------------------------------------- 795 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~---------------------------------------------- 795 (1128)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998443
Q ss_pred ----CCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCC----------------CHHHHHHHH
Q 001189 796 ----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEH----------------SDADLWEAL 854 (1128)
Q Consensus 796 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~----------------~~~~i~~~l 854 (1128)
.+.+|.+.+||.+++..+...+...+++.||+..++ .+++.+|+...... ..+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578999999875555556666788889987765 67887776432110 001122221
Q ss_pred HHh------------cHH-HHHHHccCCcchhhh------cCCCCCChhHHHHHHHHHHhc----cCCCEEEEeccccCC
Q 001189 855 ERA------------HLK-DAIRRNSLGLDAQVS------EAGENFSVGQRQLLSLSRALL----RRSKILVLDEATAAV 911 (1128)
Q Consensus 855 ~~~------------~l~-~~i~~lp~Gldt~v~------e~g~~LSgGqrqrl~lArall----~~p~iLlLDEpTs~l 911 (1128)
... .+. ...+.++.|++..++ .....||||||||++|||||+ ++|+||||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 001123335544322 223579999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEE--EEEeCCEEE-EecChhH
Q 001189 912 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI--LLLDSGRVL-EYDTPEE 964 (1128)
Q Consensus 912 D~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i--~vl~~G~i~-~~g~~~~ 964 (1128)
|+.+.+.+.+.|++..+++|+|+|||+++.+..||++ ++|.+|+.. .....++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999886688999999998777779987 788877543 3344444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-27 Score=251.33 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=101.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +....|+.++|+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589986 89999999999999999999999999 99999994 333332 2234678899999997 556
Q ss_pred cc-cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 839 LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 839 l~-~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
+. +.... ...+........+.+.++. | | |||||++|||||+.+|+||||||||++ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 62 21000 0000000000112222221 1 2 999999999999999999999999999 888
Q ss_pred HHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 918 ~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
.+.+.|++..+++||| |||+++.+.. +...++|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 9999998874478999 9999886653 3334555
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-25 Score=257.74 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE----eC
Q 001189 246 ISGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV----HE 319 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~--~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l----~~ 319 (1128)
|||||||||+|||+|+.+| ++|||||||++||+.+.+++++.+.... +|.|+|+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 7999999999999999999 9999999999999999999998665433 689999999999999889999999 89
Q ss_pred CeEeee
Q 001189 320 GMVKEE 325 (1128)
Q Consensus 320 G~i~~~ 325 (1128)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998754
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=240.52 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCCCChhHHHHHHHHHHhc------cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEE
Q 001189 877 AGENFSVGQRQLLSLSRALL------RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 949 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~ 949 (1128)
...+||||||||++|||||+ ++|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999999865 4799999999999977799999
Q ss_pred EEeCCEEEE
Q 001189 950 LLDSGRVLE 958 (1128)
Q Consensus 950 vl~~G~i~~ 958 (1128)
+|++|++++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=239.63 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 241 ERGVNISGGQKQRVSMARAVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLARal~------~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
....+||||||||++|||||+ .+|++|||||||++||+.+.+++++.+......|+|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 445689999999999999999 79999999999999999999999986655555689999999999998889999
Q ss_pred EEEeCCeEee
Q 001189 315 ILVHEGMVKE 324 (1128)
Q Consensus 315 ~~l~~G~i~~ 324 (1128)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-24 Score=222.52 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=107.3
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc--cccccHhhccc
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD 840 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~Tv~~nl~ 840 (1128)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 22222 222333 66777762 1222222111
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH------
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR------ 914 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~------ 914 (1128)
.. .....+..|+...+... ...|||||||++||||+..+|++|+|||||++||+.
T Consensus 63 --------------~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 --------------HY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------------HH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------------HH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 11 01112234555555444 347999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEE
Q 001189 915 ----------TDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 915 ----------t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
..+.+++.|++.. +|.|+|+|||+++++..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4577888876543 489999999999999887765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-24 Score=221.75 Aligned_cols=148 Identities=13% Similarity=0.165 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+++|+||||||||||+++|+|++. |.++|.+.........+++++|++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 567776654332124577899999987 33444410 00
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH-----hccCCCEEEEec--cccCCCHHHHHHHHHHHHH
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA-----LLRRSKILVLDE--ATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra-----ll~~p~iLlLDE--pTs~lD~~t~~~i~~~l~~ 925 (1128)
+ .+ .+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+...+.+.+.+++
T Consensus 63 -----~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0 00 0123455566899999999999996 999999999999 9999999999999999976
Q ss_pred HcCCcEEEEeec---Cchhhhh-cCEEEEEeCCEEEEe
Q 001189 926 EFKSCTMLIIAH---RLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 926 ~~~~~Tvi~vtH---~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
.+.|+|+++| +++.+.. ||| .+|++++.
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 5677888885 7788877 887 56777663
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-24 Score=223.41 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=102.9
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC--CCcccHHHHHhcCCCCCHHHHHH
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW--IFNATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
|+||++++|++++|+||||||||||++++.+-....++ ..-.++++|++. .+.+++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~-----d~~~g~~~~~~~~~~~~~~~~~~~~~----------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISS-----DFCRGLMSDDENDQTVTGAAFDVLHY----------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEH-----HHHHHHHCSSTTCGGGHHHHHHHHHH-----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEcc-----HHHHHHhcCcccchhhHHHHHHHHHH-----------
Confidence 68999999999999999999999999986542211110 001256667653 223343333321
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHH----------------HH
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------------VG 281 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~----------------~~ 281 (1128)
..+ ..+..|..+.+. .-...|||||||++||||+..+|++++|||||++||+. ..
T Consensus 65 ~~~--------~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 65 IVS--------KRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp HHH--------HHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred HHH--------HHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 000 001123333332 23456999999999999999999999999999999999 44
Q ss_pred HHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
+.+.+.+.....+|.|+|+|||+++.+..++++
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777765433334589999999999998877664
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-24 Score=231.03 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEEEEecCCCCCcccHHHHH-
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIFNATVRDNI- 204 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~~~Tv~eni- 204 (1128)
+++|+|+ ++|++++|+||||||||||+++|+|+ +|++|.+.. .+..|||+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 998886532 234699999987 6666
Q ss_pred hcCCCCCHHHHHHHHH---HhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 205 LFGSAFEPARYEKAID---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~---~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.++.+ .+..... ...+.+.++ . .| |||||++|||||+.+|++|||||||++ +.
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 81 PYLRP----LHDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp TTTHH----HHHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHH----HHHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 34210 0000000 000111111 1 12 999999999999999999999999999 66
Q ss_pred HHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+.+++.+... .+|+|+| |||+++.++. +...++|.
T Consensus 137 ~~l~~~l~~l-~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRL-GFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTB-CTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHh-cCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 7777755443 5688999 9999886543 44455664
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-25 Score=235.29 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=118.9
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhceEEEcCCCccccc-c-H
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKILGIIPQSPVLFSG-T-V 835 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-T-v 835 (1128)
..|+||||+|++|++++|+||||||||||+++|.|++ | |+|.+ |+++...++ ...++.++|+||++.+|.. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887755432 2356789999999877743 2 1
Q ss_pred hhccc---cCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH-----HHHhccCCCEEEE
Q 001189 836 RFNLD---PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL-----SRALLRRSKILVL 904 (1128)
Q Consensus 836 ~~nl~---~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l-----Arall~~p~iLlL 904 (1128)
.+++. +... ..+.++.++++... ...++ .+||||||||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 1111 12344555544321 11111 4699999999999 8999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 905 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
||||+++|.+++..|++.|.+..++.| ++| +..||+|+|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999987666666 677 456999887764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-24 Score=251.05 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=131.1
Q ss_pred CceeeeeEEEcCCc--------------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 759 PVLHGLSFTIPPSD--------------------KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge--------------------~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALL 896 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG--qrqrl~lArall 896 (1128)
.++++|++.....|+.||+.+... ...+.+.++..++.+ ++..+ . ||+| ||||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 278999975445699998865321 223555566555432 11111 2 8999 999999999999
Q ss_pred c----------CCCEEEEeccccCCCHHHHHHHHHHHHHHc----------CCcEEEEeecCchh--hhh-cCEEE
Q 001189 897 R----------RSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNT--IID-CDRIL 949 (1128)
Q Consensus 897 ~----------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~----------~~~Tvi~vtH~l~~--~~~-~D~i~ 949 (1128)
+ +|++++|||||++||+.+++.+++.|++.. ...++++.||.++. ++. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999998888752 13678899999886 665 77663
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-22 Score=224.29 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE--EE
Q 001189 243 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI--IL 316 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i--~~ 316 (1128)
...||||||||++|||||+ .+|++|||||||++||+...+.+++.+.. ..++.|+|+|||+.+.+..||++ ++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~-~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 4689999999999999996 68999999999999999999999885544 34578999999998888889987 78
Q ss_pred EeCCeE
Q 001189 317 VHEGMV 322 (1128)
Q Consensus 317 l~~G~i 322 (1128)
|.+|..
T Consensus 296 ~~~g~s 301 (322)
T 1e69_A 296 MVNGVS 301 (322)
T ss_dssp ESSSCE
T ss_pred EeCCEE
Confidence 888854
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-24 Score=242.79 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=113.1
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
|++++| | ++++++++|.|++|+.++|+||||||||||+++|.|+++|++|.|.++|.+. +.....|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 445555 4 1489999999999999999999999999999999999999999999998652 22222334444432
Q ss_pred CCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 826 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 826 Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
| |||+||++|||||..+|++||||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCc-EEEEeecCchhhhhcCEEEEEeCCE
Q 001189 906 EATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~~~~-Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
|||+. .+++.|+....++ |+|+++|+++....|||+++|++|+
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 3456666655554 7999999999777799999998875
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-23 Score=245.56 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=153.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---ecCCCC-----
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFG----- 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~---~i~~~~----- 813 (1128)
+.++++++++.|..+ ..+|+++ |+|.+||+++|+||||||||||+++|.|+++|++|.|.++|. ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 458899999999633 3699999 999999999999999999999999999999999999999998 554321
Q ss_pred hHHhhhceEEEcCC-Cccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 814 LMDLRKILGIIPQS-PVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~-~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
...+++.++|++|+ ..++ ..|+.+|+... .+.. ... .......+ +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~---~~~---------~~~v~~~l-d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDF---RDR---------GQHVLLIM-DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHH---HTT---------TCEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHH---HhC---------CCCHHHHH-HhHHHHHHHH-HHHHH
Confidence 34578889999995 3333 44888876531 1111 000 00000011 2234699999 99999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-----Cc-----EEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-----SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-----~~-----Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
| +++|++ |+++|+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889988 999999999999999988654 43 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 001189 962 PEELLS 967 (1128)
Q Consensus 962 ~~~l~~ 967 (1128)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 998865
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-22 Score=206.13 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=98.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCc-e------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDAS-A------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-~------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
+++|+||||||||||+++|+|++...-.+. . ..+..++|++|++ ++.+|++ +. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-~------------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-K------------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE-T------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh-h------------
Confidence 689999999999999999999875221111 1 1235689999986 2233331 10 0
Q ss_pred CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--cCCCcCHHHHHHHHHHHHccccCC
Q 001189 223 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA-----VYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa-----l~~~~~illLDE--pts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
. .+ ....++..+.+||||||||++|||| ++.+|++++||| ||++||+...+.+.+.+ .. .+
T Consensus 63 ~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l-~~--~~ 130 (178)
T 1ye8_A 63 F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM-HD--PN 130 (178)
T ss_dssp T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-TC--TT
T ss_pred c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH-hc--CC
Confidence 0 00 1134666778999999999999996 999999999999 99999999999888754 32 46
Q ss_pred cEEEEEcc---Cccchhc-CCEEEEEeCCeEee
Q 001189 296 KTRVLVTN---QLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 296 ~tvilvtH---~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
.|+|++|| +..+++. +|+ .+|++.+
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 78999996 5566654 565 4455554
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-23 Score=217.54 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=112.2
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHh
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 836 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~ 836 (1128)
.++++| .+|++||++||+||||||||||+++|.|+++ .|.+++.....-+....++.++|+||++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 345554222211112346779999999988754 777
Q ss_pred hccccC----C-----CCCHHHHHHH----------HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 837 FNLDPF----S-----EHSDADLWEA----------LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 837 ~nl~~~----~-----~~~~~~i~~~----------l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+.++ . .....++.+. ++..++.+...+.| ..|| +|+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 776421 1 1122333332 23334444333333 3455 8999
Q ss_pred CCCEEEEeccccCC----CHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe
Q 001189 898 RSKILVLDEATAAV----DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 898 ~p~iLlLDEpTs~l----D~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
+|++++|||||+++ |+..++.+++.+++.. .+.|+|+|||+++++.. ||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7789999999988864 37899999999999987 99999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-22 Score=219.40 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW 851 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~ 851 (1128)
.+||+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++++||++.++.. ||.+|+.+.......+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2356789999999988865 999999765432212222
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcE
Q 001189 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 931 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~T 931 (1128)
+.+......++...++ ..||||||||+++|||++. +++|||||.+||+... .+.+.|.+ ..+
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCc
Confidence 2222222223322222 2599999999999999886 9999999999999763 33344443 389
Q ss_pred EEEeecCchhh
Q 001189 932 MLIIAHRLNTI 942 (1128)
Q Consensus 932 vi~vtH~l~~~ 942 (1128)
+|+|.|+.+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99999987665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-22 Score=224.27 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=123.8
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHh--hhceEEEcCCCc-cccc
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPV-LFSG 833 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-lf~~ 833 (1128)
++++||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+..... ..+ |..++|++|++. ++..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 356788999999999999999999999999999999999999999999876431 223 457999999997 6654
Q ss_pred -cHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecccc
Q 001189 834 -TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATA 909 (1128)
Q Consensus 834 -Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs 909 (1128)
|+++|+.... ...+. ..++.+++.+ -.+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSS-------CCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCc-------chhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8888875310 00000 0011111110 011222 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEeec---------Cchhhhh-cCEEEEEeCCEE
Q 001189 910 AVDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~~~~Tvi~vtH---------~l~~~~~-~D~i~vl~~G~i 956 (1128)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99997652 22222 14789999999 2333333 689999999974
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=208.48 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEE
Q 001189 880 NFSVGQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall---------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
.||||||||++|||+|+ .+|+||||||||++||+...+.+.+.|.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998853 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHH
Q 001189 951 LDSGRVLEYDTPEEL 965 (1128)
Q Consensus 951 l~~G~i~~~g~~~~l 965 (1128)
|++|+|++.|+|+++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-22 Score=230.37 Aligned_cols=165 Identities=19% Similarity=0.128 Sum_probs=125.1
Q ss_pred CCceeeeeEEeeCCC--------------------EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecC---cEEEEec
Q 001189 135 RPTLLNINLDIPVGS--------------------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG---TVAYVPQ 191 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~--------------------~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~---~i~~v~Q 191 (1128)
+.+|++|||++++|+ +++|+||||||||||+|+|+|+++|++|.+..-.. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 99999999999999999999999998876533211 1289999
Q ss_pred CCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH--HHHHHHHHHHHcc-------
Q 001189 192 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYS------- 262 (1128)
Q Consensus 192 ~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG--QkqRiaLARal~~------- 262 (1128)
++...+.|+.||+.++.. ..+..+.++..++.+. +..+ .|||| ||||++|||||..
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 976557899999877642 2334555666654321 1111 29999 9999999999999
Q ss_pred ---CCCEEEEeCcCCCcCHHHHHHHHHHHHccc-----cC----CcEEEEEccCccc--hhc-CCEE
Q 001189 263 ---NSDVFIFDDPLSALDAHVGRQVFDRCIRGE-----LS----GKTRVLVTNQLHF--LSQ-VDRI 314 (1128)
Q Consensus 263 ---~~~illLDEpts~LD~~~~~~i~~~~~~~~-----~~----~~tvilvtH~~~~--l~~-~d~i 314 (1128)
+||+++|||||++||+..++.+++.+.... .. ..++++.||.++. ++. +|+|
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999999999999888877554331 11 3677888998765 433 4544
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-21 Score=220.10 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=124.1
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHh--hhceEEEcCCCc-ccc-c
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDL--RKILGIIPQSPV-LFS-G 833 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 833 (1128)
..+||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+|++|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3478889999999999999999999999999999999999999999987643 1222 457999999987 664 4
Q ss_pred cHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccC
Q 001189 834 TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAA 910 (1128)
Q Consensus 834 Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~ 910 (1128)
|+++|+..... ..+. ..++.+++.+ -.+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSS-------CCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCCh-------hhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 88888753100 0000 0011111110 011222 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEeecC---------chhhhh-cCEEEEEeCCEE
Q 001189 911 VDVRTDALIQKTIREEFKSCTMLIIAHR---------LNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 911 lD~~t~~~i~~~l~~~~~~~Tvi~vtH~---------l~~~~~-~D~i~vl~~G~i 956 (1128)
+|+.+.. +.+.+ ..+.|+|++||. ++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9997653 22222 147899999992 333333 689999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-22 Score=223.12 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=124.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEE-----------------------EcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFT-----------------------IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~-----------------------i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 577777765 899999999999999999999999999999
Q ss_pred CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhh
Q 001189 798 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLD-AQV 874 (1128)
Q Consensus 798 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v 874 (1128)
..|. +++++|+|++.++..|+++|+.... ...+.. ....+.++++.+..|.. ..+
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~~ 174 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYACA 174 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEEE
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCCc
Confidence 8663 4699999999998889999986532 111100 01112333444433332 222
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh--cCEEEEEe
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLD 952 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~--~D~i~vl~ 952 (1128)
..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|+|+.+.... ++|.+.+.
T Consensus 175 ----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 175 ----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp ----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999998621 1122221 2 34666666655432 45544444
Q ss_pred CC
Q 001189 953 SG 954 (1128)
Q Consensus 953 ~G 954 (1128)
+|
T Consensus 244 d~ 245 (312)
T 3aez_A 244 TT 245 (312)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-22 Score=214.01 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=103.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcc-----
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNA----- 198 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~----- 198 (1128)
.-|+||||++++|++++|+||||||||||+++|+|++ | |.... .+..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4799999999999999999999999999999999998 5 44321 13468999998766532
Q ss_pred ------cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEE
Q 001189 199 ------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM-----ARAVYSNSDVF 267 (1128)
Q Consensus 199 ------Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL-----ARal~~~~~il 267 (1128)
++.+| .+|. ..+.+.++++...+ ..++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 33333 2221 13344455443221 1111 5799999999999 89999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
+|||||+++|.++++.+.+.+.. ..+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~-~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQ-LNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHH-HHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH-HHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988888776543 223345 677 577899988765
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-20 Score=214.15 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=145.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC-------CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-------FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~-------~~~ 814 (1128)
..++.+++++.|..+ ..+|+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|.+..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358889999999633 3699999 9999999999999999999999999999999999999998865211 112
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lAr 893 (1128)
..+++.+.+++|.+. ....++..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 223444555554321 012334444444444444322 222211 012234699999 899999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--C-Cc-----EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--K-SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~-~~-----Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++ |+|+|+.....+.+.+++.. + |. ||+++||+++ -.-||++++|.+|+|+..|++.++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999998865 2 56 8999999998 333999999999999999999987
Q ss_pred hh
Q 001189 966 LS 967 (1128)
Q Consensus 966 ~~ 967 (1128)
..
T Consensus 254 ~~ 255 (347)
T 2obl_A 254 NH 255 (347)
T ss_dssp TC
T ss_pred CC
Confidence 64
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-21 Score=217.31 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=109.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEE-----------------------eeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLD-----------------------IPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~-----------------------i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
.|+++||++.|. |+++++++. +++|++++|+|+||||||||+++|+|+++|.
T Consensus 43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 589999999994 577777765 8999999999999999999999999999887
Q ss_pred CCCceeecCcEEEEecCCCCCcccHHHHHhcCC----C--CCHHHHHHHHHHhCcHHHHhcCCCCCc-ccccCCCCCCCh
Q 001189 176 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGS----A--FEPARYEKAIDVTSLQHDLDLLPGGDV-TEIGERGVNISG 248 (1128)
Q Consensus 176 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~----~--~~~~~~~~~~~~~~l~~~~~~l~~g~~-t~vg~~g~~LSG 248 (1128)
.|. ..++|++|++.++..|++||+.+.. + .+.+.+.+.++.. ..+.. .. ...|||
T Consensus 118 ~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l---------~~~~~~~~----~~~lS~ 179 (312)
T 3aez_A 118 DHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV---------KSGSDYAC----APVYSH 179 (312)
T ss_dssp TTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH---------HTTCSCEE----EEEEET
T ss_pred CCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh---------CCCcccCC----cccCCh
Confidence 553 4699999999998779999997532 1 2223333333322 12221 22 257999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+||+++|||++.+|+|+|||||++.+|+
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 999999999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-19 Score=212.18 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 879 ENF-SVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 879 ~~L-SgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
..| |||||||++||||++.+| ++|||||||+|||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999877789999999999988889999999665
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-20 Score=227.16 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=121.7
Q ss_pred CCceeeeeE-EEcCCcEEEEECCCCCCHHHHHHH--HhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccccc
Q 001189 758 PPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT 834 (1128)
Q Consensus 758 ~~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~--l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~T 834 (1128)
.++|++++| .|++||+++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+|+++|++... ++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-GK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT-TS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc-Cc
Confidence 479999999 999999999999999999999999 6899999999999999873 222334567799999997531 11
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc-----
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA----- 909 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs----- 909 (1128)
+.. +..... .+..++++..++.+...+.+ ..|||| +|++|+|||||+
T Consensus 103 l~~-~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 103 LFI-LDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp EEE-EECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred EEE-EecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 110 111100 00111223334444333322 246666 478999999998
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh---------hh-cCEEEEEeCC
Q 001189 910 AVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-CDRILLLDSG 954 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~---------~~-~D~i~vl~~G 954 (1128)
++|+...+.+.+.++.+. .++|||+|+|+++.+ .. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 468999999999998764 489999999999985 45 9999999983
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-21 Score=198.88 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=119.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHH
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 850 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i 850 (1128)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .+++++++++|+. .++ +.|+..+....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999886543 4688999999986 343 344432110000
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH-HHHH---HhccCCCEEEEec--cccCCCHHHHHHHHHHHH
Q 001189 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL-SLSR---ALLRRSKILVLDE--ATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 851 ~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl-~lAr---all~~p~iLlLDE--pTs~lD~~t~~~i~~~l~ 924 (1128)
+...+..+++.+..+|+|||+++ ++++ |++++|+|||||| ||..+|....+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01122367777788999999998 5555 6899999999999 899999999888888887
Q ss_pred HHcCCcEEE----EeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 925 EEFKSCTML----IIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 925 ~~~~~~Tvi----~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+ ..|+| .|+||.+ ..-+|+|..+++|+|++..
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 4 33444 4459875 3336777777888888753
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-19 Score=226.41 Aligned_cols=172 Identities=14% Similarity=0.168 Sum_probs=122.9
Q ss_pred ccEEEEE-----EEEEeCCCCCCceeeeeEEEcC-------CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 742 GSIKFED-----VVLRYRPELPPVLHGLSFTIPP-------SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 742 g~i~~~~-----v~~~y~~~~~~~l~~vsl~i~~-------Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+|||||||||+++++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999433 4799999999988 999999999999999999999 99864
Q ss_pred CCCChHHhhhceE-EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 810 AKFGLMDLRKILG-IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 810 ~~~~~~~~r~~i~-~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+.++| ||||++. ..|+.+++.. +.++.+.+. .| -.++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~---~~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIM---SG--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHh---hc--------hhhhHHHHHH-
Confidence 23566 9999974 4467777631 112222211 11 2357777765
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHH-HHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEE--EecCh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVL--EYDTP 962 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t-~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~--~~g~~ 962 (1128)
+++|++++.+|+++||||||+|+|+.. ...+++.|+.+. . ++|+|++||+++.+.. ||++.++ +|++. +.|.+
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999977 455778877764 3 7999999999999887 9999887 58887 55665
Q ss_pred hH
Q 001189 963 EE 964 (1128)
Q Consensus 963 ~~ 964 (1128)
++
T Consensus 938 ~~ 939 (1022)
T 2o8b_B 938 ED 939 (1022)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=189.46 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=68.3
Q ss_pred CCCCChhHHH------HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 878 GENFSVGQRQ------LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 878 g~~LSgGqrq------rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 46799999999776666999999
Q ss_pred Ee--CCE
Q 001189 951 LD--SGR 955 (1128)
Q Consensus 951 l~--~G~ 955 (1128)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 86 454
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-20 Score=219.54 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
+.++++++++.|.. +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|....
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35799999 999999999999999999999999999999998753211
Q ss_pred ----ecCcEEEEecC-CC-CCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 182 ----IRGTVAYVPQV-SW-IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 182 ----~~~~i~~v~Q~-~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++..|+|++|+ .. ....|+.+|+.+. .++... .+ .++. .+=+...+||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~~---~~--~~v~--------~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFRD---RG--QHVL--------LIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHHT---TT--CEEE--------EEEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHHh---CC--CCHH--------HHHHhHHHHHHHH-HHHH
Confidence 23458999995 33 3477999999863 122110 00 0000 1112346899999 9999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc---C-Cc-----EEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---S-GK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~---~-~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
|| +.+|++ |++||+.+...+.+.+.+... + |+ |++++|||++ ...||++++|.+|+|+.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 888888 999999999999875544333 2 64 9999999999 6678999999999999998
Q ss_pred ChhHHh
Q 001189 327 TFEDLS 332 (1128)
Q Consensus 327 ~~~~l~ 332 (1128)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 877654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=191.49 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCCCChHHHH------HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEE
Q 001189 243 GVNISGGQKQ------RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 316 (1128)
Q Consensus 243 g~~LSGGQkq------RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 316 (1128)
...||||||| |+++||||+.+|++|||||||++||+...+.+++.+......++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 6788899999999999999999999999999988655444457899999999888888999999
Q ss_pred Ee
Q 001189 317 VH 318 (1128)
Q Consensus 317 l~ 318 (1128)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-19 Score=196.72 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=101.1
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 5899999 9999999999999999999999999999998 999999987653221 1112222221
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
..|++. ..| |++|||||..+|++|+||||| |+++..
T Consensus 79 -----------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 112221 123 899999999999999999999 988865
Q ss_pred HHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 918 ~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
.+. +....+.||++++|+.+....|||+++|..
T Consensus 115 ~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHH---HHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 443 333368999999999886666999988754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=193.24 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 245 NISGGQKQRVSMARAVY---------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~---------~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+++.+... +.|+|++||. +. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~---~qt~i~~th~-~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV---PQAIVTGTEL-AP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS---SEEEEEESSC-CT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc---CcEEEEEEec-cc--cCCEEE
Confidence 59999999999999999 899999999999999999999999865432 2799999994 44 889999
Q ss_pred EEeCCeEeeecChhHH
Q 001189 316 LVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 316 ~l~~G~i~~~g~~~~l 331 (1128)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999988765
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=194.02 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=118.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999888 77654433 3455666665555444322 1112
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH-HHHHHHHHHhccCCCEEEEecccc---C---
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ-RQLLSLSRALLRRSKILVLDEATA---A--- 910 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq-rqrl~lArall~~p~iLlLDEpTs---~--- 910 (1128)
++... ..++++..+.. .+++...+.. +.+...++|.+| +||+. |+++..+|++|||||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 00111222111 1122221222 222224589999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHc--CCcEEEEeecCc--h--------------------hhhh-cCEEEEEeCCEE
Q 001189 911 VDV-RTDALIQKTIREEF--KSCTMLIIAHRL--N--------------------TIID-CDRILLLDSGRV 956 (1128)
Q Consensus 911 lD~-~t~~~i~~~l~~~~--~~~Tvi~vtH~l--~--------------------~~~~-~D~i~vl~~G~i 956 (1128)
+|. .....+.+.|+++. .++|||++||.. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 55567888887764 379999999995 4 5555 999999998875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-19 Score=205.11 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=95.9
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.+ .+.+. +.+.....++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i-~i~~~-------~e~~~~~~~~~i~----------- 220 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII-SIEDT-------EEIVFKHHKNYTQ----------- 220 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE-EEESS-------CCCCCSSCSSEEE-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE-EECCe-------eccccccchhEEE-----------
Confidence 7999999999999999999999999999999999999976533 22221 1000000000000
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC-
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG- 295 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~- 295 (1128)
..+ | |||+||++|||||..+|++++|||||+. +. ++ ++.....|
T Consensus 221 -------------~~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e~----~~-~l~~~~~g~ 265 (330)
T 2pt7_A 221 -------------LFF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---EA----YD-FYNVLCSGH 265 (330)
T ss_dssp -------------EEC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---HH----HH-HHHHHHTTC
T ss_pred -------------EEe-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---HH----HH-HHHHHhcCC
Confidence 000 1 8999999999999999999999999982 32 22 22222234
Q ss_pred cEEEEEccCccchhcCCEEEEEeCCe
Q 001189 296 KTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 296 ~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
.|+|++||+.+..+.+||+++|.+|.
T Consensus 266 ~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 266 KGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CEEEEEEcccHHHHHhhhheehhcCC
Confidence 58999999999777899999998875
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-20 Score=189.77 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=88.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCCC---hHHhh-hceE----EEcCCCccccccHhhccc
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFG---LMDLR-KILG----IIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~Tv~~nl~ 840 (1128)
++++|+|+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| +.++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987776 66788 4788 899999887 222
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~-lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
. +.+. .+++.+++.+ +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 0 1121 6799999999 99 999999995 9999999999999999999863
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-20 Score=196.75 Aligned_cols=166 Identities=15% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc--------eeecCcEEEEecCCCCC-cccHHHHHh
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS--------AVIRGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~--------~~~~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
.++++| .++++|++++|+||||||||||+++|+|+++...+.. ...+..++|++|++.+| ..|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 578888 7999999999999999999999999999985221110 00134589999998776 457777764
Q ss_pred c-----C--C--CCCHHHHHHHHHHh-CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH---HHccCCCEEEEeCc
Q 001189 206 F-----G--S--AFEPARYEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR---AVYSNSDVFIFDDP 272 (1128)
Q Consensus 206 ~-----g--~--~~~~~~~~~~~~~~-~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR---al~~~~~illLDEp 272 (1128)
. + . ....+...+.++.. .+. + ...+.|.+.++-..++ +|+.+|++++||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~-------------~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep 150 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVL-------------I---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR 150 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEE-------------E---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEE-------------E---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence 2 1 0 01122222222221 000 0 0122333333333333 89999999999999
Q ss_pred CCCc----CHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEe
Q 001189 273 LSAL----DAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVH 318 (1128)
Q Consensus 273 ts~L----D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~ 318 (1128)
|+++ |+...+.+.+.+.... ..|.|+|+|||+++.+. .||+|++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 7778888877544432 34789999999999876 489999984
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-17 Score=215.25 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=119.5
Q ss_pred CcEEEEe-----EEEEeCCCCCCCceeeeeEEeeC-------CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCc
Q 001189 118 PAISIRN-----GYFSWDSKAERPTLLNINLDIPV-------GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 185 (1128)
Q Consensus 118 ~~i~~~~-----~~f~~~~~~~~~~L~~isl~i~~-------G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~ 185 (1128)
+.++++| +++.|+. ++++++|++|++++ |++++|+||||||||||++.+ |++.+. .+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------aq 817 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------AQ 817 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------HT
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------hh
Confidence 4699999 9998842 35899999999987 999999999999999999999 987642 24
Q ss_pred EE-EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VA-YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~-~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+| ||||++. ..||.|+|... .++.+.+. .+-.++|+|+++ +++|++++.+|
T Consensus 818 iG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~la~~~ 869 (1022)
T 2o8b_B 818 MGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILMHATAH 869 (1022)
T ss_dssp TTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCTT
T ss_pred eeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHHhCCCC
Confidence 55 9999873 55777776421 11111111 112468888775 99999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHcc-ccC-CcEEEEEccCccchhc-CCEEEEEeCCeEe
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRG-ELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 323 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~-~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 323 (1128)
+++|||||++|+|+.....+...++.. ..+ |.++|++||+.+.... +|++.++ +|++.
T Consensus 870 sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 870 SLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred cEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999998754433334433 234 8999999999998875 7888776 58877
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-19 Score=194.91 Aligned_cols=164 Identities=13% Similarity=0.193 Sum_probs=102.5
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.+++++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 47999999999999999999999999999999999976 555444 3577899999997433448887
Q ss_pred ccccCC---C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc
Q 001189 838 NLDPFS---E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908 (1128)
Q Consensus 838 nl~~~~---~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpT 908 (1128)
|+.... . ...+.+.+.++ .+..+.+..+ ..||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753211 1 11122222222 2222333222 4699999999988 6888999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh-h-cCEEEEEeCCEEEEecChhHHh
Q 001189 909 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII-D-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 909 s~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~-~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
...|.. +.+. .+.||+++||+...+. . ++++ ++|+ ++++++
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 877753 2222 4789999999744443 3 4434 5564 556655
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=208.24 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=119.0
Q ss_pred ccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHH--------hcCCCCCCceEEECCEecC
Q 001189 742 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--------FRIVELERGRILIDGFDIA 810 (1128)
Q Consensus 742 g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l--------~g~~~p~~G~I~i~g~~i~ 810 (1128)
+.|.+++...-+-. +.+.+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35777776443311 124689999999999999999999999999999999 55554443221
Q ss_pred CCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 811 ~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++++ +.+. .+.++.+.+ ...+|+|++++..
T Consensus 702 ----------~~~~------------d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIV------------DCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECC------------SEEE--------------EECC-----------------------CHHHHHHHH
T ss_pred ----------chHH------------HHHH--------------HhcCchhhH--------------HHhHhhhHHHHHH
Confidence 0000 0110 001111111 1247888888888
Q ss_pred HHHHh--ccCCCEEEEeccccCCCHHHHHHH-HHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 891 LSRAL--LRRSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 891 lAral--l~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+...-||++..+.+|++...++++++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 88888 899999999999999999887776 56665543 38999999999877777999999999999998888776
Q ss_pred h
Q 001189 966 L 966 (1128)
Q Consensus 966 ~ 966 (1128)
.
T Consensus 812 ~ 812 (934)
T 3thx_A 812 T 812 (934)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-19 Score=196.23 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCce---------eecCcEEEEecCCCCC-cccHHHHHhcCCCCCH----HHH
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASA---------VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP----ARY 215 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~---------~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~----~~~ 215 (1128)
.++|+||||||||||+++|+|...|++|.+. ..+..++|++|++.++ ..||.||+.||..... +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4899999999999999999999999877432 1235699999999886 5699999999864321 223
Q ss_pred HHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 216 ~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
.+.++ ....+.++ ..||||||||+++|||++. +|+||||+++||+... .++..+.. .
T Consensus 84 ~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~- 140 (270)
T 3sop_A 84 EKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---V- 140 (270)
T ss_dssp HHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---T-
T ss_pred HHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---c-
Confidence 33322 22222222 3699999999999999886 9999999999999864 33343322 2
Q ss_pred cEEEEEccCccch
Q 001189 296 KTRVLVTNQLHFL 308 (1128)
Q Consensus 296 ~tvilvtH~~~~l 308 (1128)
.++|+|.|+.+.+
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 7899998886654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-19 Score=199.35 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=111.4
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCC-CC-c
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-N 197 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~ 197 (1128)
++.+||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 356889999999999999999999999999999998876653221 125999999987 65 6
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSA 275 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~ 275 (1128)
.|++||+.++.... .. ...++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 170 ~~v~e~l~~~~~~~----------~d-~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTT----------CS-EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcC----------Cc-chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 79999997541000 00 0001111 11101111123588 999999999999999 99999 9999
Q ss_pred cCHHHHHHHHHHHHccccCCcEEEEEccCcc---------chhc-CCEEEEEeCCeE
Q 001189 276 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH---------FLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 276 LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~~-~d~i~~l~~G~i 322 (1128)
||+.....- +. ...|.|+|++||.-. .... .+.|.++..|+.
T Consensus 233 lD~~~~~~~---~~--~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQARE---FN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHHHH---HH--HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHHHH---HH--HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999854321 11 124789999999322 2222 478888888863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-18 Score=194.31 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 197 (1128)
+.++.+++++.|.. +..+|+++ |+|.+|++++|+|+||||||||+++|+|..+|+.|. +.++.+++
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~-------i~~~G~~~---- 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV-------LALIGERG---- 109 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE-------EEEESCCH----
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE-------EEEecccH----
Confidence 35788999999963 35699999 999999999999999999999999999999987642 22333321
Q ss_pred ccHHHH------------HhcCCCC---CHHHHHHHHHHhCcHHHHhcCCCCCc-ccccCCCCCCChHHHHHHHHHHHHc
Q 001189 198 ATVRDN------------ILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDV-TEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 198 ~Tv~en------------i~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~-t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
..+++. +.+.... ..+++......+.+.+.+.. .+.+ -.+-+...+||+|| |||++| +
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 011111 1111111 12344444444444443322 1111 11113456899999 899999 5
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc--cCCc-----EEEEEccCccchhcCCEEEEEeCCeEeeecChhHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE--LSGK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~--~~~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
.+|++ |++||+.....+.+.+.+.. ..|. |++++||+++ -..||++++|.+|+|+.+++.+++
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 78887 99999999999887544433 2477 8999999998 556899999999999998876654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-19 Score=210.65 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=139.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhhhceEEEcC-----CCcccc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQ-----SPVLFS 832 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 832 (1128)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677776 8999999999999999999999999999998 899987776653 2 35778999999 888898
Q ss_pred ccHhhccccCCCC-------CHHHHHHHHHHhcH-------------HHHHH----------------HccCCcchhhhc
Q 001189 833 GTVRFNLDPFSEH-------SDADLWEALERAHL-------------KDAIR----------------RNSLGLDAQVSE 876 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~-------~~~~i~~~l~~~~l-------------~~~i~----------------~lp~Gldt~v~e 876 (1128)
.+++.||....+. +++.+..+++.++. .+.++ .++.++++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999653322 45666666666432 11111 245678888888
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCE--EEEeccccCCCHH----H-----HHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKI--LVLDEATAAVDVR----T-----DALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~i--LlLDEpTs~lD~~----t-----~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
++..+|+| ||++++++++.+|+| +|+||+|+.+|.. + +..++++++...+|+|.+.++||+..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 87778999 899999999999999 9999999999965 3 34678888877789999999999863
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-17 Score=205.54 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=117.4
Q ss_pred ccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCCCChHHh
Q 001189 742 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 742 g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
+.|++++. +++- ....+++|+||+ |++++|+||||||||||+++|.|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hh
Confidence 45888887 3432 234789999998 99999999999999999999999874 6778652 1 12
Q ss_pred hhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL- 895 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral- 895 (1128)
+..+++++| +|.. ++.+|+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 456888877 4432 55555421 3789999999999999
Q ss_pred -ccCCCEEEEecc---ccCCCHHHH-HHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 896 -LRRSKILVLDEA---TAAVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 896 -l~~p~iLlLDEp---Ts~lD~~t~-~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
+.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....| .-.+.++++...
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999999 999999876 478888876 589999999998876545 223445555444
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=199.47 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=117.5
Q ss_pred CcEEEEeEEEEeCC--CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHH--------hcCCCCCCCCceeecCcEE
Q 001189 118 PAISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--------LGELPPVSDASAVIRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~--~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l--------~G~~~~~~g~~~~~~~~i~ 187 (1128)
..+.++++..-+-. .+++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|..+. .++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~------~~~ 703 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA------EVS 703 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE------EEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc------cch
Confidence 35777776433321 1235799999999999999999999999999999999 5544442211 111
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~ 265 (1128)
++. .++. ..++.+.+ ...+|+|++++..+|+++ +.+|+
T Consensus 704 ~~d---~i~~-----------------------~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~~s 743 (934)
T 3thx_A 704 IVD---CILA-----------------------RVGAGDSQ--------------LKGVSTFMAEMLETASILRSATKDS 743 (934)
T ss_dssp CCS---EEEE-----------------------ECC-----------------------CHHHHHHHHHHHHHHHCCTTC
T ss_pred HHH---HHHH-----------------------hcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccCCc
Confidence 110 0110 01111111 135888888888888888 99999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccc-c-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGE-L-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++||||||+|+|+.....+...++... . .|.|+|++||+.+....+|++..+.+|++...++.+++
T Consensus 744 LlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 744 LIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999998887754454432 2 48999999999888888999999999999887766554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-18 Score=195.94 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCC-CC-cc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 198 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 198 (1128)
+.+||++++|++++|+|+||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 45889999999999999999999999999999998876643221 125899999987 65 67
Q ss_pred cHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCC
Q 001189 199 TVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLS 274 (1128)
Q Consensus 199 Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts 274 (1128)
|++||+.++.. .+. ..++.+++. ........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d~----~lldt~Gl~-----------~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV----VLCDTSGRL-----------HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCSE----EEEECCCCS-----------SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCHH----HHHHhcCCC-----------hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 99999976421 100 001111111 00111123588 999999999999999 99999 999
Q ss_pred CcCHHHHHHHHHHHHccccCCcEEEEEccCcc---------chh-cCCEEEEEeCCe
Q 001189 275 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH---------FLS-QVDRIILVHEGM 321 (1128)
Q Consensus 275 ~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~-~~d~i~~l~~G~ 321 (1128)
+||+.....-+. ...|.|+|++||.-. .+. ..+.|..+..|+
T Consensus 289 glD~~~~~~~~~-----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 289 GLNMLPQAREFN-----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGGHHHHHHHH-----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCCHHHHHHHHH-----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 999986533221 124789999999322 222 247888888886
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=189.67 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhhcCEEEEEe
Q 001189 880 NFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall----~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
.||||||||++||++|+ ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 68999999999999999999999999998753 689999999988777799999986
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-18 Score=212.19 Aligned_cols=190 Identities=13% Similarity=0.228 Sum_probs=122.2
Q ss_pred cEEEEEEEEEeCCCCCCceeee----------eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCC
Q 001189 743 SIKFEDVVLRYRPELPPVLHGL----------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK 811 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~v----------sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~ 811 (1128)
.++++|+++.|+....++|+.+ +++++. +||+||||||||||+++|.|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4889999999964333455444 366664 999999999999999999999989 79999999998632
Q ss_pred ---CChHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 812 ---FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 812 ---~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
-....+|+.++|+||++.++.. ||++|+... ... +.. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~-----------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAG-----------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHC-----------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcC-----------Cccccc---hH
Confidence 1234578899999999988765 888887421 111 000 011122 23
Q ss_pred HHHHHHHhccCCCEEEEecc------ccCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhh--------h-----c
Q 001189 888 LLSLSRALLRRSKILVLDEA------TAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTII--------D-----C 945 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEp------Ts~lD~~t~~~i~~~l~~~~~---~~Tvi~vtH~l~~~~--------~-----~ 945 (1128)
++.++.+....|+++|+||| |++||+...+.+.+.++++.. +.++++++|+++... . .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555668999999999 999999999999999998542 468889999987431 1 3
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 001189 946 DRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
..|+|+.++.+++.|+++++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 678999999999888876554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-17 Score=175.56 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=99.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-------CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhcc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl 839 (1128)
.|++||+++|+||||||||||+++|+|.+.| ..|.|++++.+. .. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445788887542 11 2356677777776666888887
Q ss_pred ccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-------ccCCCEEEEeccccCCC
Q 001189 840 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL-------LRRSKILVLDEATAAVD 912 (1128)
Q Consensus 840 ~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral-------l~~p~iLlLDEpTs~lD 912 (1128)
.+.......+ +++.+..++++ ..+|++|+|||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6543222211 11222223333 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCcEEEEeecCchh----hhh-cCEEEEEeCC
Q 001189 913 VR-------TD-----ALIQKTIREEF--KSCTMLIIAHRLNT----IID-CDRILLLDSG 954 (1128)
Q Consensus 913 ~~-------t~-----~~i~~~l~~~~--~~~Tvi~vtH~l~~----~~~-~D~i~vl~~G 954 (1128)
++ .+ ..+.+.|.+.. .++|||+|||.... +.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 22 24555555433 38999999995554 766 9999999875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=156.75 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCCCChHHHHHHHHH------HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 241 ERGVNISGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLA------Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
....+||||||||++|| |||+.+|+++||||||++||+.+.+++.+.+......|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 34578999999999876 999999999999999999999999999886554444589999999999767779999
Q ss_pred EEE--eCCe
Q 001189 315 ILV--HEGM 321 (1128)
Q Consensus 315 ~~l--~~G~ 321 (1128)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=198.94 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=107.4
Q ss_pred CcEEEEeEEEEeCCC--CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCcee-ecCcEEEEecCC
Q 001189 118 PAISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV-IRGTVAYVPQVS 193 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~~~-~~~~i~~v~Q~~ 193 (1128)
+.+.++++ ++|-- +++++++|+||+ |++++|+||||||||||+++++|... +..|.... .+..+++++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 35888877 33320 246899999999 99999999999999999999999763 55554321 1234777766
Q ss_pred CCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 001189 194 WIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFD 270 (1128)
Q Consensus 194 ~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~illLD 270 (1128)
+| ..++.||+.. .+|+|+++++.+|+++ +.+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 3456655432 3689999999999999 9999999999
Q ss_pred Cc---CCCcCHHHHH-HHHHHHHccccCCcEEEEEccCccchhcC
Q 001189 271 DP---LSALDAHVGR-QVFDRCIRGELSGKTRVLVTNQLHFLSQV 311 (1128)
Q Consensus 271 Ep---ts~LD~~~~~-~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 311 (1128)
|| |++||+.+.. .+.+.+.. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 99 9999998764 56665433 578999999998776554
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=156.97 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred cCCCCCChhHHHHHHHH------HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEE
Q 001189 876 EAGENFSVGQRQLLSLS------RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lA------rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
....+||||||||++|| ||++.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44568999999999876 99999999999999999999999999999999864 478999999999655559999
Q ss_pred EEE--eCCE
Q 001189 949 LLL--DSGR 955 (1128)
Q Consensus 949 ~vl--~~G~ 955 (1128)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-19 Score=188.55 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=118.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHhhhceEEEcCCCccccccH
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 835 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 835 (1128)
++|++++|+||||||||||+++|.|+++ |..|+ ++|.++...+...+|+.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78897 599988888888898876 79999999999
Q ss_pred hhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH-HhccCCCEEEEeccccCCCHH
Q 001189 836 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR-ALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 836 ~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr-all~~p~iLlLDEpTs~lD~~ 914 (1128)
..|+. . .++++++++++.....- .+..+.|+++.... ++ .+| +++.+|++++|||+|+++|.+
T Consensus 77 ~~n~~-g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNLY-G--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEEE-E--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCccC-C--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99983 2 25677887776521100 01123344443221 12 566 889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 915 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 915 t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
+++.|++.|.+..++ +.++| +. ..||+|+|+++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998875444 35677 33 67999988764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-17 Score=191.10 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=115.0
Q ss_pred Cceeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCC----ce-EEECCEecCCCChHHhhhceEEEcCCCcc
Q 001189 759 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELER----GR-ILIDGFDIAKFGLMDLRKILGIIPQSPVL 830 (1128)
Q Consensus 759 ~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 830 (1128)
+.|+.+ .+.|++|++++|+||||||||||++.|++.+ +|++ |+ |+|++.+.. .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6666 67 999986641 25678889999988
Q ss_pred ccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-------cCCCEEE
Q 001189 831 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-------RRSKILV 903 (1128)
Q Consensus 831 f~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall-------~~p~iLl 903 (1128)
+..++.+|+.+..... |.+|+|++.++++++ .+|++||
T Consensus 192 ~~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8778999986542222 234555555555555 6899999
Q ss_pred EeccccCCCHHH------------HHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 904 LDEATAAVDVRT------------DALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 904 LDEpTs~lD~~t------------~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||+.+|++. ...+...|.++. .++|||+++|....... ++.+.+...|++++++....|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 233444444433 47999999998876543 4456677788888777765553
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-17 Score=186.04 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=107.2
Q ss_pred EEEEEEeCCCCCCceeeeeE-------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhh
Q 001189 747 EDVVLRYRPELPPVLHGLSF-------TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl-------~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r 818 (1128)
.+++++|.+...+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ .+. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57788886555567888776 78899999999999999999999999999997 56665443322 211 22
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
...++++|.+.... . ++-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~------------------------------------------~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------------------------------------------LGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------------------------------------------SCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------------------------------------------CCHHH----HHHHHhhhC
Confidence 23445555432110 0 11111 999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
|++|++|||| |.++.+.+.++. ..|+|||+++|+.+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 777766555543 3589999999999999779999988654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-17 Score=175.16 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=101.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEE-------CCEecC-
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILI-------DGFDIA- 810 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-----~p~~G~I~i-------~g~~i~- 810 (1128)
|+++|++|+|+ . +++++ |.+++|++++|+|+||||||||++.|.|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~-~--~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMS-A--PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEE-E--SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheee-c--CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 78999999996 2 58888 889999999999999999999999999998 888887754 222221
Q ss_pred --CCC--------hHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCC
Q 001189 811 --KFG--------LMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAG 878 (1128)
Q Consensus 811 --~~~--------~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g 878 (1128)
... ...+++.++++.|+...+++ .+..++.......+.++.+.+ .. .++... +....
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---------~~--~~~~~~~v~nK~ 147 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---------VD--SNIAVLVLLTKA 147 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---------HH--TTCCEEEEEECG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---------HH--cCCCeEEEEecc
Confidence 111 12334445555554322222 233333211111112222222 21 122222 35555
Q ss_pred CCCChhHHHH-HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC
Q 001189 879 ENFSVGQRQL-LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 928 (1128)
Q Consensus 879 ~~LSgGqrqr-l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~ 928 (1128)
..+|+||||| +..+++++.+|+++++|||||++|......+.+.|.+...
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6799999999 8999999999999999999999999999999999987543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-17 Score=179.74 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=99.5
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 214 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 214 (1128)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.+......+.|++|++.-+ ..
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~-------------v~--- 76 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI-------------VN--- 76 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE-------------EE---
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee-------------ee---
Confidence 5899999 9999999999999999999999999999887 665554444556655543110 00
Q ss_pred HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC
Q 001189 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294 (1128)
Q Consensus 215 ~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~ 294 (1128)
...+|....+| |++|||||..+|++++||||| |+++...+.+. ...
T Consensus 77 ---------------------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~----~~~ 122 (261)
T 2eyu_A 77 ---------------------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA----AET 122 (261)
T ss_dssp ---------------------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH----HHT
T ss_pred ---------------------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH----Hcc
Confidence 00122222233 899999999999999999999 99887655442 235
Q ss_pred CcEEEEEccCccchhcCCEEEEEeC
Q 001189 295 GKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 295 ~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
|.++++++|+.+....+|+++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8999999999987777899988754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-19 Score=204.45 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=127.2
Q ss_pred ceeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCCCC----ceEEE----CCEecCCCChHHhhhceEEEcCCCc
Q 001189 760 VLHGLSFTIPP--SDKVGIVGRTGAGKSSMLNTLFRIVELER----GRILI----DGFDIAKFGLMDLRKILGIIPQSPV 829 (1128)
Q Consensus 760 ~l~~vsl~i~~--Ge~v~ivG~~GsGKSTll~~l~g~~~p~~----G~I~i----~g~~i~~~~~~~~r~~i~~v~Q~~~ 829 (1128)
+.+.|+++|++ |++++|+||||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 35555 4555556 56999999999
Q ss_pred cccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-cCCCEEEEec--
Q 001189 830 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-RRSKILVLDE-- 906 (1128)
Q Consensus 830 lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall-~~p~iLlLDE-- 906 (1128)
+|.+|+++||.++....... .. ..+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~------------~~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITT------------QA---------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHH------------HH---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeCCchHH------------HH---------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 89999999997653210000 00 013455677777777775 5899999998
Q ss_pred -cc------cCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 907 -AT------AAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 907 -pT------s~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+ .++|+..+..+.+.|++..+ +.++|+++|. .+..+ +|++.++++ +++.|+++||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 57898888888888876544 7888888875 33333 677666653 556677777754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-17 Score=184.63 Aligned_cols=163 Identities=16% Similarity=0.088 Sum_probs=80.1
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
+|++++|+. ..++++++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++.. . .-++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEEe
Confidence 478888864 36999999998 99999999999999999998 889999 9888887643 1 1245689999
Q ss_pred CCCccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 826 QSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 826 Q~~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
|++.++ .-|+.++..+.......+.++ .+.+.+... .+..+ .++|||||||+.+|||+. +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~~---~~~~~----~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDEQ---FERYL----HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CT-----THHHHHHHH---HHHHH----HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHHH---HHHHH----HHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 348888775432111101000 011111110 11122 359999999999999986 9999
Q ss_pred eccccC-CCHHHHHHHHHHHHHHcC--CcEEEEeecCchh
Q 001189 905 DEATAA-VDVRTDALIQKTIREEFK--SCTMLIIAHRLNT 941 (1128)
Q Consensus 905 DEpTs~-lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~ 941 (1128)
||||++ ||+... +.+++..+ +.++|+..||+.+
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 33443332 5788888999753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-17 Score=172.19 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
|++++|+||||||||||+++|+|+++ ++| ... ++..+||++|+. +++ ++|+.-- .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~-~~~------ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRV-GLE------ 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEEC-CCC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcc-ccc------
Confidence 78999999999999999999999987 666 321 245689999975 222 1121100 000
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--cCCCcCHHHHHHHHHHHHcc
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV-SMAR---AVYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRG 291 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi-aLAR---al~~~~~illLDE--pts~LD~~~~~~i~~~~~~~ 291 (1128)
.-+......+|+.+..+|||||+++ +|++ |+..+|+++|||| |+..+|+...+.+.+. +.
T Consensus 68 ------------~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~-l~- 133 (189)
T 2i3b_A 68 ------------PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT-LS- 133 (189)
T ss_dssp ------------CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH-HH-
T ss_pred ------------CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH-Hh-
Confidence 0001122368888899999999998 5565 6899999999999 8999999887777653 33
Q ss_pred ccCCcEEEE--Ec--cCccchhcCCEEEEEeCCeEeee
Q 001189 292 ELSGKTRVL--VT--NQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 292 ~~~~~tvil--vt--H~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
..+++|+ ++ |+.+ +..+|+|..+++|+|.+.
T Consensus 134 --~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 --TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp --CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred --CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 2345554 34 9885 556678777788888763
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-18 Score=179.65 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=105.1
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc---cHhhccccC-C
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG---TVRFNLDPF-S 843 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---Tv~~nl~~~-~ 843 (1128)
.++|+++||+||||||||||+++|.|++.| .++|++|++.++.. |+++|+... .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999988743 676654321 1
Q ss_pred ---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH----HHHHHHHHHhccCCCEEEEeccccC------
Q 001189 844 ---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ----RQLLSLSRALLRRSKILVLDEATAA------ 910 (1128)
Q Consensus 844 ---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq----rqrl~lArall~~p~iLlLDEpTs~------ 910 (1128)
....+.+.++++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1234455555555433221 122244678885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCcEEEEeecCc
Q 001189 911 -VDVRTDALIQKTIREEF--KSCTMLIIAHRL 939 (1128)
Q Consensus 911 -lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l 939 (1128)
||+.++..+++.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999887642 588999999984
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-17 Score=177.61 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=93.8
Q ss_pred CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce--eecCcEEEEecCCCCCcccHHHHHhcCC--
Q 001189 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVPQVSWIFNATVRDNILFGS-- 208 (1128)
Q Consensus 133 ~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~--~~~~~i~~v~Q~~~l~~~Tv~eni~~g~-- 208 (1128)
+++++|+|+||++++|++++|+||||||||||+++|+|.+ |... ..+..++|++|++.....|+.+|+.+..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3467999999999999999999999999999999999976 2111 2356799999997444679999986421
Q ss_pred -CC------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 209 -AF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 209 -~~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.+ +.+.+.+.++. + ..+.... ...||+||+||+++ +++..+|+++|||||....|..
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~------l---~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKN------I---VEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHH------H---HTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred CCCCCcccccHHHHHHHHHH------H---HCCCCee----cccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 11 12222333222 1 1222222 25799999999988 6888999999999998888764
Q ss_pred HHHHHHHHccccCCcEEEEEccCcc
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.+ ..+.+++++||+..
T Consensus 150 --l~~------~~~~~i~v~th~~~ 166 (245)
T 2jeo_A 150 --IRD------MFHLRLFVDTDSDV 166 (245)
T ss_dssp --HHT------TCSEEEEEECCHHH
T ss_pred --HHH------hcCeEEEEECCHHH
Confidence 211 13689999999743
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=169.85 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=106.1
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc---CCCC-
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF---GSAF- 210 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~---g~~~- 210 (1128)
.++|+++++.+++|++++|+|+||||||||++.|+|.+.|..|. .|.|+..+.. ...++..+.. +.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~------~v~~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC------CEEEEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC------eEEEEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 35899999999999999999999999999999999999876552 2444443321 1112222210 1111
Q ss_pred ----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEeCcCC---C-
Q 001189 211 ----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ-KQRVSMARAVYSNSDVFIFDDPLS---A- 275 (1128)
Q Consensus 211 ----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ-kqRiaLARal~~~~~illLDEpts---~- 275 (1128)
+.+.+.+.++. .++..+ -.+.+....+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~-----~l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDE-----LFGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHH-----HHSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHH-----HhccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 01111111111 111111 01223334689999 77777 999999999999999999 4
Q ss_pred --cCH-HHHHHHHHHHHcccc-CCcEEEEEccCc--c--------------------chh-cCCEEEEEeCCeE
Q 001189 276 --LDA-HVGRQVFDRCIRGEL-SGKTRVLVTNQL--H--------------------FLS-QVDRIILVHEGMV 322 (1128)
Q Consensus 276 --LD~-~~~~~i~~~~~~~~~-~~~tvilvtH~~--~--------------------~l~-~~d~i~~l~~G~i 322 (1128)
+|. .....+.+.+..... .|.|+|++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 555667665544333 389999999995 3 444 5899999998874
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-16 Score=185.64 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=100.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|.++|++++|+. ..+++|++|+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 45899999999964 37999999998 99999999999999999999886665 2343332111 1124568
Q ss_pred EEEcCCCccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++++|++.++ ..||.+|+.+.......+.++. +.+++.. .++.+++||++|||+++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 4589998865432221111111 1222221 245567789999999999999
Q ss_pred ---EEEEeccc-cCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 901 ---ILVLDEAT-AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 901 ---iLlLDEpT-s~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+|++|||| .++|+..... ++.+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99999999 6999876433 33333578899999887654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-16 Score=167.72 Aligned_cols=164 Identities=10% Similarity=-0.009 Sum_probs=113.9
Q ss_pred CceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh---ceEEEcCCCcccccc
Q 001189 759 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSGT 834 (1128)
Q Consensus 759 ~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~T 834 (1128)
+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 57888888 8999999999999999999999999999888888888766443 3333332 23443333211
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCC-
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAV- 911 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~l- 911 (1128)
+++........ ... + ..+. ...|.++.++...+.+...+|+ +|++||||+.+
T Consensus 83 --~~~~~~~~~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEecccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 01111100000 000 0 0011 1348999988888887778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHc--CCcEEEEeecCc--------hhhhh-cCEEEEEeCC
Q 001189 912 -DVRTDALIQKTIREEF--KSCTMLIIAHRL--------NTIID-CDRILLLDSG 954 (1128)
Q Consensus 912 -D~~t~~~i~~~l~~~~--~~~Tvi~vtH~l--------~~~~~-~D~i~vl~~G 954 (1128)
|+...+.+.+.|++.. .++|||+++|.. ..+.. ||+|++|++.
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887753 478999999999 44666 9999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=193.23 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=107.8
Q ss_pred cEEEEEEEEEe-----CCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRY-----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y-----~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.|.+++...-. ..+...+++|++|++++|++++|+|||||||||+++++.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 57777653322 11235799999999999999999999999999999998754211
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
.+.-.++|++..-+ .+.+++. ...++.+.+ ..+-.++|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l-----------~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNI-----------YKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-cc
Confidence 11112333332110 0001110 001111111 11225799999999999999 88
Q ss_pred CCCEEEEeccccCCCHHHHHHHH-HHHHHHc--CCcEEEEeecCchhhhhcCEEEE-EeCCEEE
Q 001189 898 RSKILVLDEATAAVDVRTDALIQ-KTIREEF--KSCTMLIIAHRLNTIIDCDRILL-LDSGRVL 957 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~-~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~v-l~~G~i~ 957 (1128)
+|++|||||||+|+|+.....+. ..++.+. .++|+|++||+++...-||+.-- +.++++.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 99999999999999998877776 5665542 48999999999887765665421 3444543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-16 Score=175.99 Aligned_cols=150 Identities=16% Similarity=0.090 Sum_probs=100.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-H---Hh--hhceEEEcCCCccccc-cHhhcccc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-M---DL--RKILGIIPQSPVLFSG-TVRFNLDP 841 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~---~~--r~~i~~v~Q~~~lf~~-Tv~~nl~~ 841 (1128)
.+|++++|+||||||||||++.|.|+++|++|+|.++|.|+..... + .+ |..+++++|++.++.. |+++|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999876542 2 22 4569999999877654 77777632
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCCCHHHHHHH
Q 001189 842 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALI 919 (1128)
Q Consensus 842 ~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~lD~~t~~~i 919 (1128)
. .. .+....+-..+...+.. ...++..++||++||||+..+|+ +|.|| |+++.+ +
T Consensus 180 ~-----------~~-~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 180 M-----------KA-RGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-----------HH-HTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-----------Hh-CCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 00 00000000011111110 01145666999999999999999 55566 555543 3
Q ss_pred HHHHHHHc--CCcEEEEeecCchh
Q 001189 920 QKTIREEF--KSCTMLIIAHRLNT 941 (1128)
Q Consensus 920 ~~~l~~~~--~~~Tvi~vtH~l~~ 941 (1128)
.+.+++.. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33333322 37899999998543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-17 Score=178.35 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=105.8
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc---ccHHHHHhcC--C--CCCHHHHHH
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN---ATVRDNILFG--S--AFEPARYEK 217 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~---~Tv~eni~~g--~--~~~~~~~~~ 217 (1128)
.++|++++|+|+||||||||+++|+|++.| .++|++|++.++. .|+++|+.+. . ..+.+++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998865 5899999998763 4788876643 2 234455666
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEeCcCCC-------cCHHHHHHHHH
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ----KQRVSMARAVYSNSDVFIFDDPLSA-------LDAHVGRQVFD 286 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ----kqRiaLARal~~~~~illLDEpts~-------LD~~~~~~i~~ 286 (1128)
.++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++ ||+..+..+.+
T Consensus 73 ~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 65554333222 22345788885 5789999999999999999999999 99988888877
Q ss_pred HHHcc-ccCCcEEEEEccCc
Q 001189 287 RCIRG-ELSGKTRVLVTNQL 305 (1128)
Q Consensus 287 ~~~~~-~~~~~tvilvtH~~ 305 (1128)
.+.+. ..+|+|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 55443 23588999999974
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-15 Score=191.83 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=103.2
Q ss_pred cEEEEeEEEEe----CCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCceeecCcEEEEecCC
Q 001189 119 AISIRNGYFSW----DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 119 ~i~~~~~~f~~----~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~~~~~~i~~v~Q~~ 193 (1128)
.+.+++...-. -..+++++++|++|++++|++++|+||||||||||++++.+..-. ..|... ...-+.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH
Confidence 46666643211 011246899999999999999999999999999999998753211 001000 00001111111
Q ss_pred CCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 194 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 194 ~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
.+|. ..++.+. +..+..++|+|++|+..++++ +.+|+++||||||
T Consensus 718 ~i~~-----------------------~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~ 762 (918)
T 3thx_B 718 GIFT-----------------------RMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELG 762 (918)
T ss_dssp EEEE-----------------------EC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTT
T ss_pred HHHH-----------------------hCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCC
Confidence 1110 0011111 112235799999999999999 8999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccchhcCCEE
Q 001189 274 SALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~~d~i 314 (1128)
+|||+.....+...++... ..|.|+|++||+.+....+|+.
T Consensus 763 ~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 763 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999998888875555432 3589999999998877666543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=164.46 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=86.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecC--------------CCCCcccHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV--------------SWIFNATVRDNILFGSA 209 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~--------------~~l~~~Tv~eni~~g~~ 209 (1128)
.+++|++++|+||||||||||++.|+|.+.+..+.. ...+.+-|+..+ ..++..|+.||+.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g-~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 98 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR- 98 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-CCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEE-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccC-CCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEe-
Confidence 699999999999999999999999999654432111 012233343333 2222223333333221
Q ss_pred CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh-HHHHHHHHHHHHcc-------CCCEEEEeCcCCCcCHH--
Q 001189 210 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVYS-------NSDVFIFDDPLSALDAH-- 279 (1128)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG-GQkqRiaLARal~~-------~~~illLDEpts~LD~~-- 279 (1128)
..++ .|++++..+++++. +|++++||||++.+|+.
T Consensus 99 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 99 -----------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred -----------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccC
Confidence 1222 33344555555554 89999999999999984
Q ss_pred -----HH-----HHHHHHHHccc-cCCcEEEEEccCcc----chhc-CCEEEEEeCCe
Q 001189 280 -----VG-----RQVFDRCIRGE-LSGKTRVLVTNQLH----FLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 280 -----~~-----~~i~~~~~~~~-~~~~tvilvtH~~~----~l~~-~d~i~~l~~G~ 321 (1128)
.. +.+++.+.... ..|.|+|++||... .+.. ||++++|++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 11 24555444432 24899999999544 4654 79999998753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-16 Score=164.63 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=103.7
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cH----hhc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV----RFN 838 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv----~~n 838 (1128)
-..++|++++|+||||||||||+++|.|+++| ..|.|.+.+.+... ..++.++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999988866532 235679999999988865 55 466
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHH
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~ 918 (1128)
+.++... .|-.++. ++.++..++++||| ||+.+.+.
T Consensus 87 ~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5432210 0000111 23344457999999 99999999
Q ss_pred HHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 919 i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+.+.+. ++.||++++|+++.+.. |+ +.+| .++++++.+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999876 57899999999999876 32 5566 567777654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=147.82 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=69.7
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE--e
Q 001189 879 ENFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--D 952 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall----~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl--~ 952 (1128)
..||||||||++|||+++ ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 569999999999999996 5679999999999999999999999999987888999999999888789999966 4
Q ss_pred CCE
Q 001189 953 SGR 955 (1128)
Q Consensus 953 ~G~ 955 (1128)
+|.
T Consensus 143 ~g~ 145 (173)
T 3kta_B 143 DGV 145 (173)
T ss_dssp TTE
T ss_pred CCE
Confidence 664
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-15 Score=171.98 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=99.0
Q ss_pred EeEEEEeCCCCCCCceeeeeE-------EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-eecCc--------E
Q 001189 123 RNGYFSWDSKAERPTLLNINL-------DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-VIRGT--------V 186 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl-------~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-~~~~~--------i 186 (1128)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+.++.+ ..... .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~ 170 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK 170 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc
Confidence 4567777543 3567888776 7788999999999999999999999999988643322 11111 1
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
++++|. .++.. .++-.+ +|||||..+||+
T Consensus 171 ~~v~q~---------------------------------------------~~~~~--~~~~~~----~La~aL~~~Pdv 199 (356)
T 3jvv_A 171 CLVNQR---------------------------------------------EVHRD--TLGFSE----ALRSALREDPDI 199 (356)
T ss_dssp SEEEEE---------------------------------------------EBTTT--BSCHHH----HHHHHTTSCCSE
T ss_pred cceeee---------------------------------------------eeccc--cCCHHH----HHHHHhhhCcCE
Confidence 111111 11111 122222 999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCC
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 320 (1128)
+++|||+ |+++.+.+.+. ...|.|+++++|+.+.+..+||++.|..|
T Consensus 200 illDEp~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTA----AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp EEESCCC---SHHHHHHHHHH----HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred EecCCCC---CHHHHHHHHHH----HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999 78776555442 34589999999999999888999988654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-16 Score=174.59 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC-CCCCCCC--------ceeecCcEEEEecCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE-LPPVSDA--------SAVIRGTVAYVPQVS 193 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~-~~~~~g~--------~~~~~~~i~~v~Q~~ 193 (1128)
+|++++|. .+.++++++|+| +|+|+||+|||||++.|.|. ..|++|- ...-...+++++|++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 46788885 357999999998 99999999999999999997 7776651 011123579999987
Q ss_pred CCC-cccHHHHHhcCCCCCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 194 WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 194 ~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
.++ ..||.|+..++...+. +++....+. +.+..+. ...++|||||||+++|||+. ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 654 6799998887643211 122222221 1111111 12469999999999999985 999999
Q ss_pred cCCC-cCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 272 PLSA-LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 272 pts~-LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
||++ ||+... .++..+. ...+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHT--TTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-HHHHHHH--hcCCEEEEEEeCCCC
Confidence 9986 999864 3333321 123678888999874
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-15 Score=186.87 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=108.5
Q ss_pred cEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|.+++...-.-. +...+++|++|+ ++|++++|+|||||||||++++|.|+..+ ..|. .+.. -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hc
Confidence 4777664221100 224689999999 99999999999999999999999997532 2221 1110 12
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
..+++++| +|.. ++.+|+.. |+ .++|+++++ ++.+...+.
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~ 685 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLAS---------------------------GR--------STFMVEMTE-TANILHNAT 685 (800)
T ss_dssp EEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCC
T ss_pred ccceeHHH---HHhhCCHHHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhcc
Confidence 34555554 3322 33333311 11 246777765 444445688
Q ss_pred CCCEEEEeccccCCCHHHHHHH-HHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+|+++||||||+|+|+.....+ ++.++.+. .++|+|++||+.+...-||++..+.+|++....
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 9999999999999998555443 66666543 379999999999877678888778888876553
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-15 Score=171.93 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=115.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+++++ +++|+.. + |+++||+|++|++ +||+||||||||||+++|+|+. ++|.++....+...++.+
T Consensus 17 l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 17 VPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred EEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 55666 7788542 5 9999999999999 9999999999999999999984 455555444444456789
Q ss_pred EEEcCCCcccc-ccHhhccccCCCCCHHHHHHH----HHHhcHHHHHHHc-------cCCcchh-------hhcCCCCCC
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEA----LERAHLKDAIRRN-------SLGLDAQ-------VSEAGENFS 882 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~~~~~~~i~~~----l~~~~l~~~i~~l-------p~Gldt~-------v~e~g~~LS 882 (1128)
+|++|++.++. .|+.+|+.+.........+.. ++ ..+.+++... +...|+. +.+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999998874 599999977654443222221 11 1223333332 1222332 123344577
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHH-Hc-CCcEEEEeecC
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EF-KSCTMLIIAHR 938 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~-~~-~~~Tvi~vtH~ 938 (1128)
-.+ +.++++|..+++|+++||||..|.+.....+.+.|++ +. .|.+|+.++.+
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 665 7899999999999999999999999888888888876 43 46788888864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-17 Score=187.97 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=129.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCCcee--------ecCcEEEEec-----CCCCCcccHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAV--------IRGTVAYVPQ-----VSWIFNATVR 201 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-~g~~~~--------~~~~i~~v~Q-----~~~l~~~Tv~ 201 (1128)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.+.. .+..++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566655 7899999999999999999999999999886 554422 3456899999 7888999999
Q ss_pred HHHhcCCCC-------CHHHHHHHHHHhCcH-----------------HHHh------------cCCCCCcccccCCCCC
Q 001189 202 DNILFGSAF-------EPARYEKAIDVTSLQ-----------------HDLD------------LLPGGDVTEIGERGVN 245 (1128)
Q Consensus 202 eni~~g~~~-------~~~~~~~~~~~~~l~-----------------~~~~------------~l~~g~~t~vg~~g~~ 245 (1128)
+|+....+. +++.+..+++++... ..+. .++.++++.|++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876443 677676666655421 1111 2355678889999889
Q ss_pred CChHHHHHHHHHHHHccCCCE--EEEeCcCCCcCHHH---H-----HHHHHHHHccccCCcEEEEEccCccc
Q 001189 246 ISGGQKQRVSMARAVYSNSDV--FIFDDPLSALDAHV---G-----RQVFDRCIRGELSGKTRVLVTNQLHF 307 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~i--llLDEpts~LD~~~---~-----~~i~~~~~~~~~~~~tvilvtH~~~~ 307 (1128)
+||| ||+++||+++.+|++ +|+||+|++||... . +.+.+.++....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999651 1 23445556666679999999999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-16 Score=182.38 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=108.4
Q ss_pred EEEEEEEE---eCCCCCCce---------eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 745 KFEDVVLR---YRPELPPVL---------HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 745 ~~~~v~~~---y~~~~~~~l---------~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
+|++|+|+ |++..+++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|. ..+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 88899998 853222455 9999999999999999999999999999999999999999999985 345
Q ss_pred ChHHhhhceEEEc-CCCcc---ccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 813 GLMDLRKILGIIP-QSPVL---FSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 813 ~~~~~r~~i~~v~-Q~~~l---f~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.....|+.+++++ |++.+ +..|+++||..... ..|..+...++.+.+.+++..+|.|+++.+++.+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 5545778899999 88875 67799999863211 1222222222334566788888999999888877777788889
Q ss_pred HHHHHHH
Q 001189 888 LLSLSRA 894 (1128)
Q Consensus 888 rl~lAra 894 (1128)
|+.....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9887653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-15 Score=185.85 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=106.4
Q ss_pred cEEEEeEEEEeCC----CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCcee-ecCcEEEEecC
Q 001189 119 AISIRNGYFSWDS----KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV-IRGTVAYVPQV 192 (1128)
Q Consensus 119 ~i~~~~~~f~~~~----~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~~-~~~~i~~v~Q~ 192 (1128)
.+.++++. .|- .+++.+++|++|+ ++|++++|+||||||||||+++++|...+ ..|.... .+..++++.|
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~- 652 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR- 652 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH-
Confidence 47776642 221 0246799999999 99999999999999999999999996422 2221110 1123455444
Q ss_pred CCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 193 SWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 193 ~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
+| ..++.||+..+ ..++|+|+++ ++.+...+.+|+++||||
T Consensus 653 --i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 653 --IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDE 694 (800)
T ss_dssp --EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEES
T ss_pred --HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEEC
Confidence 22 23444443211 1246777764 444455689999999999
Q ss_pred cCCCcCHHHHHHHHHHHHcc-cc-CCcEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 272 PLSALDAHVGRQVFDRCIRG-EL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 272 pts~LD~~~~~~i~~~~~~~-~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
|++|+|+.....+...++.. .. .|.|+|++||+.+....+|++..+.+|++...
T Consensus 695 p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 695 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99998887666653333332 23 48999999999988777888777788877643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-15 Score=172.17 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=98.8
Q ss_pred Cceeee-eEEeeCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCC---Cc-eee-------cCcEEEEecCCCCCcccHH
Q 001189 136 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSD---AS-AVI-------RGTVAYVPQVSWIFNATVR 201 (1128)
Q Consensus 136 ~~L~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~~~g---~~-~~~-------~~~i~~v~Q~~~l~~~Tv~ 201 (1128)
+.|+.+ ++.+++|++++|+||||||||||++.+++.. +|+.| +. ..+ +.++++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 467765 7899999999999999999999999999988 66653 22 211 1234445555444444555
Q ss_pred HHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCcCC
Q 001189 202 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-------SNSDVFIFDDPLS 274 (1128)
Q Consensus 202 eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~-------~~~~illLDEpts 274 (1128)
+||.+...++ |++|+|++.++++++ .+|+++++||||+
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5544432211 467788888888887 6899999999999
Q ss_pred CcCHHH------------HHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 275 ALDAHV------------GRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 275 ~LD~~~------------~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
++|+.. .+.++..+.+.. ..+.|+|+++|....... .+.+.....|++.+.+..
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999862 233443333322 248999999998764432 234555666776655543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-15 Score=173.88 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--Cc------eeecCcEEEEe
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--AS------AVIRGTVAYVP 190 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g--~~------~~~~~~i~~v~ 190 (1128)
.|.++|++++|+. ++++++++|+| +|+|+||||||||++.|+|...+..| +. ......+++++
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 5889999999963 57999999998 99999999999999999998864332 11 11223589999
Q ss_pred cCCCCC-cccHHHHHhcCCCCCHH-HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---
Q 001189 191 QVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--- 265 (1128)
Q Consensus 191 Q~~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--- 265 (1128)
|++.++ ..||.||+.++...+.. .+..+. +.++ ..++++++||++|||+++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~------~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI------DYID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHH------HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHH------HHHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 988775 78999999887543211 111111 1121 1356677889999999999999
Q ss_pred EEEEeCcC-CCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 266 VFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 266 illLDEpt-s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++++|||| ++||+....++ +.+ . .+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~~~l-k~L-~---~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFM-KRL-H---EKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHH-HHH-T---TTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHH-HHH-h---ccCcEEEEEEcccCc
Confidence 99999999 69999864433 333 2 367889998876543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-16 Score=163.88 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=90.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCCceee-----cCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAVI-----RGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-----~~~~g~~~~~-----~~~i~~ 188 (1128)
.++++|++|.|+ .+++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|..... .+.+-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378899999995 257888 899999999999999999999999999987 6666543321 111111
Q ss_pred EecCCCCC------------cccHHHHH---------hc----CCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 189 VPQVSWIF------------NATVRDNI---------LF----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 189 v~Q~~~l~------------~~Tv~eni---------~~----g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
+ ..|-.. ...+..-+ .+ ....... ..+..++. . ...+| .-.++.+.
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~---~-~~~~~---~~~v~nK~ 147 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWA---V-DSNIA---VLVLLTKA 147 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH---H-HTTCC---EEEEEECG
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHHH---H-HcCCC---eEEEEecc
Confidence 1 111110 00011100 00 0011111 11111111 0 01112 11245666
Q ss_pred CCCChHHHHH-HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 244 VNISGGQKQR-VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 244 ~~LSGGQkqR-iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
..+|+||||| +..+|+++.+|+++++|||||++|+...+.+++.+.....++
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 6899999999 899999999999999999999999999999998765543333
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=143.22 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE-
Q 001189 243 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV- 317 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l- 317 (1128)
...||||||||++|||+|+ ++|+++||||||++||+...+.+.+.+ +...++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l-~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI-KESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH-HHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 4679999999999999995 567999999999999999999998854 4344567999999999888899999865
Q ss_pred -eCCe
Q 001189 318 -HEGM 321 (1128)
Q Consensus 318 -~~G~ 321 (1128)
++|.
T Consensus 141 ~~~g~ 145 (173)
T 3kta_B 141 MRDGV 145 (173)
T ss_dssp EETTE
T ss_pred ecCCE
Confidence 4664
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-14 Score=152.77 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=105.7
Q ss_pred CCceeeeeE-EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh-cCCCCCH
Q 001189 135 RPTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEP 212 (1128)
Q Consensus 135 ~~~L~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~ 212 (1128)
-+.|+++.. .+++|++++|+||||||||||++.|++...+..+ .+.|+..+.. ...+.+.+. ++....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~- 78 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-------PCIYVTTEES--RDSIIRQAKQFNWDFE- 78 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-------CEEEEESSSC--HHHHHHHHHHTTCCCG-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEcccC--HHHHHHHHHHhcchHH-
Confidence 457888888 8999999999999999999999999987765432 3556554421 111122111 121110
Q ss_pred HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCc--CHHHHHHHHHHH
Q 001189 213 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL--DAHVGRQVFDRC 288 (1128)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~L--D~~~~~~i~~~~ 288 (1128)
.+.. ..+ ..++........... ....|.+|.++...+.+...+|+ ++++||||+.+ |+...+.+++.+
T Consensus 79 -~~~~----~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 79 -EYIE----KKL-IIIDALMKEKEDQWS--LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp -GGBT----TTE-EEEECCC----CTTB--CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred -HHhh----CCE-EEEeccccccCceee--ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 0000 000 000000000000000 12349999998888888778999 99999999888 998778887765
Q ss_pred Hccc-cCCcEEEEEccCc--------cchh-cCCEEEEEeCCe
Q 001189 289 IRGE-LSGKTRVLVTNQL--------HFLS-QVDRIILVHEGM 321 (1128)
Q Consensus 289 ~~~~-~~~~tvilvtH~~--------~~l~-~~d~i~~l~~G~ 321 (1128)
.... ..|.|+|++||+. ..+. .||+|++|++..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 5432 3589999999998 3454 489999998643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-15 Score=165.79 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=108.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEECCEecCCCC---------------hHHhhhceEEE---c
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV--------ELERGRILIDGFDIAKFG---------------LMDLRKILGII---P 825 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 825 (1128)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987753 34677788888 7
Q ss_pred CCCcc-ccccHhhccccCCCCCHHHHHHHH-------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 826 QSPVL-FSGTVRFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 826 Q~~~l-f~~Tv~~nl~~~~~~~~~~i~~~l-------~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|++.+ |+.++.||..... ...+.+.+ ....+...+... ++....... .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~v--d~~~~~~~~-~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALV--DAVHADEQM-NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEE--ETTTHHHHH-HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEE--EHHHHHHHH-hhchHHHHHHHhCCEEEEE
Confidence 88764 5679999987542 22222221 000000000000 000000000 1589999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
+|+++ ||| +.+.+.|++..++.||+++||+.-.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCC
Confidence 99987 998 6788888887778999999997443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=154.05 Aligned_cols=151 Identities=12% Similarity=0.106 Sum_probs=95.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc-cCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEH 845 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-~~~~~ 845 (1128)
.+++|++++|+||||||||||++.+++.+. .|.+ +.|.+... +..+.|++.+... ..+..++. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998664 5666 33543311 2356676655432 11211111 00111
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc--CCCHHHH---HHHH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTD---ALIQ 920 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs--~lD~~t~---~~i~ 920 (1128)
......+.++... +....+.....||+||+|++ ++++++|+++||||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 2222222222222 22223445567999998765 68889999999999999 9997544 6667
Q ss_pred HHHHHHc--CCcEEEEeecCchhh
Q 001189 921 KTIREEF--KSCTMLIIAHRLNTI 942 (1128)
Q Consensus 921 ~~l~~~~--~~~Tvi~vtH~l~~~ 942 (1128)
+.|+++. .++|||+|+|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777653 389999999987654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.3e-16 Score=171.33 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCH----HHHHHHHHHh
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP----ARYEKAIDVT 222 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~----~~~~~~~~~~ 222 (1128)
++.+++|+|++|||||||++.|.+.+.+. |.. +..+.+|+|++++++.++++|+.++.+... .....+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 46799999999999999999999998753 211 334667799999999999999976521000 0000112223
Q ss_pred CcHHHHhcCCCCCcc------cccCCCCCCChHHHHHHHHH--HHHccCCCEEEEeCcCCCcCHHH
Q 001189 223 SLQHDLDLLPGGDVT------EIGERGVNISGGQKQRVSMA--RAVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t------~vg~~g~~LSGGQkqRiaLA--Ral~~~~~illLDEpts~LD~~~ 280 (1128)
.+.+.+..++.|++| .+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 345567777777544 34556789999999999998 666 999999999999999863
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=166.54 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=111.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCE--EEEEcCCCccHHHHHHHHhcCCC---CCCC-CceeecCcEEEEecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP---PVSD-ASAVIRGTVAYVPQV 192 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~G~~~---~~~g-~~~~~~~~i~~v~Q~ 192 (1128)
.+++++ ++.|+. .+ |+++||++++|++ ++|+|+||||||||+++|+|..- +... .....+..++|++|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 355566 777852 45 9999999999999 99999999999999999999841 1100 011123469999999
Q ss_pred CCCC-cccHHHHHhcCCCCCHH-HHHHHHHHh--CcHHHHhc-------CCCCCcc-------cccCCCCCCChHHHHHH
Q 001189 193 SWIF-NATVRDNILFGSAFEPA-RYEKAIDVT--SLQHDLDL-------LPGGDVT-------EIGERGVNISGGQKQRV 254 (1128)
Q Consensus 193 ~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~--~l~~~~~~-------l~~g~~t-------~vg~~g~~LSGGQkqRi 254 (1128)
+.++ ..||.||+.+|...+.. .+..+.+.. .....+.. ++...++ .|-+.+..|+-.. +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 8876 67999999998765432 111111000 01111111 1111111 1234455677776 7
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc-cccCCcEEEEEcc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 303 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~-~~~~~~tvilvtH 303 (1128)
.++++|..+++|+++|+|+..|.+.....+++.+.. ....|..++.++.
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999999999999999999887777776554 3345778887774
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=147.41 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred CceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
+.|+++.. .+++|++++|+||||||||||++.|++ .+..+.++++..+ ..+...++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~------------------- 63 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLV------------------- 63 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHH-------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHH-------------------
Confidence 46777765 689999999999999999999999999 4333444444321 11111111
Q ss_pred ccccCCCCCHHHHHHHHHHhcH--HHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhccC-CCEEEEeccccCCC
Q 001189 838 NLDPFSEHSDADLWEALERAHL--KDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALLRR-SKILVLDEATAAVD 912 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l--~~~i~~lp~Gldt~v~e~g~~LSgG--qrqrl~lArall~~-p~iLlLDEpTs~lD 912 (1128)
+.++..++ .++.+.+. + ..+|++ ++|+++.+|+++++ |+++|+||||+.+|
T Consensus 64 --------------~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 --------------QMAETRGLNPEEALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp --------------HHHHTTTCCHHHHHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred --------------HHHHhcCCChHHHhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11111110 11111111 1 124444 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CcEEEEeecCch-------------hhhh-cCEEEEEeCC
Q 001189 913 VRTD--------ALIQKTIREEFK--SCTMLIIAHRLN-------------TIID-CDRILLLDSG 954 (1128)
Q Consensus 913 ~~t~--------~~i~~~l~~~~~--~~Tvi~vtH~l~-------------~~~~-~D~i~vl~~G 954 (1128)
+... ..+.+.|+++.+ ++|||+++|... .+.. ||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 234444555433 789999999876 3444 9999999754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-16 Score=159.43 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=76.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCC---CCCce---------------eec-CcEE----EEecCCCCCcccHHHHHh
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPV---SDASA---------------VIR-GTVA----YVPQVSWIFNATVRDNIL 205 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~---~g~~~---------------~~~-~~i~----~v~Q~~~l~~~Tv~eni~ 205 (1128)
++++|+|+||||||||+++|+|+++|. .|.+. .++ ..++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999886 33211 112 2355 788888776 111
Q ss_pred cCCCCCHHHHHHHHHHhCcHHHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 206 FGSAFEPARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~l~~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
.+++. .+++.+.+.. +| |++|.++|+ |||||||||+||||++++|+++
T Consensus 77 ----~~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11211 6788889988 99 999999995 9999999999999999998874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-15 Score=155.77 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=88.5
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS 846 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~ 846 (1128)
.+++|++++|+|||||||||++++|.|. |..|.|.++|.++..... .++.++|++|++. ...|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 788999999876532211 1334678888754 334677776421
Q ss_pred HHHHHHHHHHhcHHHHHHHc--cCCcchhh--hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHH
Q 001189 847 DADLWEALERAHLKDAIRRN--SLGLDAQV--SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922 (1128)
Q Consensus 847 ~~~i~~~l~~~~l~~~i~~l--p~Gldt~v--~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~ 922 (1128)
.. .... .+....++.. ..+++... +.....+|+|++|+++++|++.++|+++ +|++..+.+++.
T Consensus 76 -~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG--RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH--HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH--HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 0000 0000000000 01111111 2223469999999999999999999877 588777777776
Q ss_pred HHH
Q 001189 923 IRE 925 (1128)
Q Consensus 923 l~~ 925 (1128)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-15 Score=183.05 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=105.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeee----------eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCce-------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNI----------NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASA------- 180 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~i----------sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~------- 180 (1128)
.+.++|+++.|+.+ .+++|+.+ +|+++. ++|+|+||||||||+++|+|++.| ++|.+.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 24555544 377775 999999999999999999999878 566431
Q ss_pred --------eecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 181 --------VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 181 --------~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.++..++|++|++.++ ..||++||.+.. .. +.... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------~~---------~~~~~-----------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------NA---------IAGEG-----------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------HH---------HHCSS-----------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------HH---------hcCCc-----------cccc---h
Confidence 1345699999999886 579999986420 00 00000 0111 1
Q ss_pred HHHHHHHHHccCCCEEEEeCc------CCCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccch--------hc-----
Q 001189 252 QRVSMARAVYSNSDVFIFDDP------LSALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFL--------SQ----- 310 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEp------ts~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l--------~~----- 310 (1128)
+++.++.+....|+++++||| |++||+...+.+.+.+.... ..+.+++++||+.+.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 233444444568999999999 99999999888877554422 2367889999998743 11
Q ss_pred CCEEEEEeCCeEeeecChhH
Q 001189 311 VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 311 ~d~i~~l~~G~i~~~g~~~~ 330 (1128)
...|+++.++.++..|+.++
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTC
T ss_pred CceEEEecchhhcCcccHHH
Confidence 25688888887777776543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-13 Score=146.94 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=86.9
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc--CCCC-----CCceEEECCEecCC-CChHHhhhceEEEcCCCccccccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR--IVEL-----ERGRILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p-----~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.|++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 478999999999999999999999999 5555 57889998765211 0112233445554443 3344
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHH--
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVR-- 914 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~-- 914 (1128)
+......+.++..+. +.-++.++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 433222222222111 11122222 589999999999999985
Q ss_pred -----HH-----HHHHHHHHHHc--CCcEEEEeecCchhh-------------------h-hcCEEEEEeCC
Q 001189 915 -----TD-----ALIQKTIREEF--KSCTMLIIAHRLNTI-------------------I-DCDRILLLDSG 954 (1128)
Q Consensus 915 -----t~-----~~i~~~l~~~~--~~~Tvi~vtH~l~~~-------------------~-~~D~i~vl~~G 954 (1128)
++ ..+...|.+.. .++|||+++|..... . .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23333344332 389999999965432 2 38999999865
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=149.64 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=93.9
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc-----eeecCcEEEEecCCCCCcccHHHHHh-cCCCCCHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-----AVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEK 217 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-----~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~ 217 (1128)
.+++|++++|+|+||||||||++.+++.... |.. ....+.+.|++.+... ..+...+. ++...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 4789999999999999999999999986532 211 1113468888776432 22322221 233333333333
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC--CcCHHHH---HHHHHHHHccc
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--ALDAHVG---RQVFDRCIRGE 292 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts--~LD~~~~---~~i~~~~~~~~ 292 (1128)
+++...+.+ ..+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+++.+....
T Consensus 102 ~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 333332211 12344568999998865 68888999999999999 9997433 56665544432
Q ss_pred -cCCcEEEEEccCccch
Q 001189 293 -LSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 293 -~~~~tvilvtH~~~~l 308 (1128)
..|.|+|+++|.....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 3489999999987654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-15 Score=167.84 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=90.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC----C
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE----H 845 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~ 845 (1128)
++.+|||+|++|||||||.+.|.+++.+. | . -++.+.+|+||+++|+.++++|+..... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g-------------~--~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y-------------G--GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H-------------G--GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C-------------C--CCceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999864 2 0 1445667799999999999998742100 0
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchh------hhcCCCCCChhHHHHHHHH--HHhccCCCEEEEeccccCCCHHH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLS--RALLRRSKILVLDEATAAVDVRT 915 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~------v~e~g~~LSgGqrqrl~lA--rall~~p~iLlLDEpTs~lD~~t 915 (1128)
.....-++.+...+.+++..++.|++|. +...+.++||||+||+++| +++ +|+|||+||||+++|+.+
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001122345667888889998764 3445678999999999998 555 899999999999999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-15 Score=173.19 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=56.2
Q ss_pred ceeeeeEEeeC--CCEEEEEcCCCccHHHHHHHHhcCCCCCC----CCceee------------c--CcEEEEecCCCCC
Q 001189 137 TLLNINLDIPV--GSLVAIVGGTGEGKTSLISAMLGELPPVS----DASAVI------------R--GTVAYVPQVSWIF 196 (1128)
Q Consensus 137 ~L~~isl~i~~--G~~~~ivG~~GsGKSTLl~~l~G~~~~~~----g~~~~~------------~--~~i~~v~Q~~~l~ 196 (1128)
..+.|++++++ |++++|+|+||||||||+++|+|+++|+. |....- . ..|++++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999987 543210 0 1267777777667
Q ss_pred cccHHHHHhcCC
Q 001189 197 NATVRDNILFGS 208 (1128)
Q Consensus 197 ~~Tv~eni~~g~ 208 (1128)
..|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 778888877653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-13 Score=153.62 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cccHHHHHhcC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNILFG 207 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni~~g 207 (1128)
+|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++.++ ..|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999986643221 22489999998776 46889988642
Q ss_pred CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCcCHHHHHHHH
Q 001189 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVF 285 (1128)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~LD~~~~~~i~ 285 (1128)
. .+ +.+..+-..++..+. ....++..++||++||||+..+|+ ++.|| |+++.+. .
T Consensus 181 ~----------~~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~ 237 (304)
T 1rj9_A 181 K----------AR--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------L 237 (304)
T ss_dssp H----------HH--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------H
T ss_pred H----------hC--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------H
Confidence 1 00 111001011111111 112356677999999999999999 55555 5555443 3
Q ss_pred HHHHccc-cCCcEEEEEccCccc
Q 001189 286 DRCIRGE-LSGKTRVLVTNQLHF 307 (1128)
Q Consensus 286 ~~~~~~~-~~~~tvilvtH~~~~ 307 (1128)
+.+.... ..+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3222211 236899999998543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-15 Score=158.07 Aligned_cols=139 Identities=11% Similarity=0.149 Sum_probs=93.5
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCH
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 847 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~ 847 (1128)
.++|+++||+||||||||||+++|.|++.|+ | ..+++|+++...+..+..+|+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~-- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRK-- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccC--
Confidence 4789999999999999999999999999875 4 246677777766666655554311100
Q ss_pred HHHHHHHHHhcHHHHHHHccCC--cchhhhcCCCCCChhHHHHHHHH-HHhccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 001189 848 ADLWEALERAHLKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLS-RALLRRSKILVLDEATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 848 ~~i~~~l~~~~l~~~i~~lp~G--ldt~v~e~g~~LSgGqrqrl~lA-rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~ 924 (1128)
.+..+.+...+.+++..++.| +++.+.+.+..+|+||+|++++| ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 000001111223334444333 67778888889999999999998 89999999888999852 1122
Q ss_pred HHcCCcEEEEeecCchh
Q 001189 925 EEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 925 ~~~~~~Tvi~vtH~l~~ 941 (1128)
+.+ ..++++.+..+.
T Consensus 146 ~~~--d~~i~vd~~~~~ 160 (208)
T 3c8u_A 146 AIW--DVSIRLEVPMAD 160 (208)
T ss_dssp GTC--SEEEEECCCHHH
T ss_pred Hhc--CEEEEEeCCHHH
Confidence 221 367778887776
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-15 Score=156.48 Aligned_cols=170 Identities=16% Similarity=0.064 Sum_probs=105.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCCCHHH
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 849 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~ 849 (1128)
|++++|+|||||||||++++|.+ |.+|.+.++|.++... ..+++++|.+..+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999987 6789999998655321 2356777765333 23566555321
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCC--ChhHHHHHHHHH------HhccCCCEEEEeccccCCCHHHHHHHHH
Q 001189 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENF--SVGQRQLLSLSR------ALLRRSKILVLDEATAAVDVRTDALIQK 921 (1128)
Q Consensus 850 i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L--SgGqrqrl~lAr------all~~p~iLlLDEpTs~lD~~t~~~i~~ 921 (1128)
....+.. +....++. ..+ .... +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. ++
T Consensus 66 ~~~~~~~-~~~~ild~-~~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLLA-QNDVVLDY-IAF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHHT-TCEEEEES-CCC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHhc-CCcEEEee-ccC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 0000000 00000000 000 0000 000124 788888888887 8888888888884 899988877 77
Q ss_pred HHHHHc-CCcEEEEeecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 922 TIREEF-KSCTMLIIAHR-LNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 922 ~l~~~~-~~~Tvi~vtH~-l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
.++... .+.++|.+||. +++++. ||+|+ ++|+++..|+++-|-
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 777754 35799999999 999988 99998 999999999987653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-13 Score=160.80 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCC-ChHHHHHHHHHHHHccCC--CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCC
Q 001189 244 VNI-SGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320 (1128)
Q Consensus 244 ~~L-SGGQkqRiaLARal~~~~--~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 320 (1128)
..| ||||||||+|||||+.+| ++|||||||++||+.+...+.+.+.... +|+|||+|||+++.+..||++++|+++
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-HHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999988665443 389999999999998889999999665
Q ss_pred e
Q 001189 321 M 321 (1128)
Q Consensus 321 ~ 321 (1128)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-15 Score=171.99 Aligned_cols=176 Identities=12% Similarity=0.120 Sum_probs=115.1
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 820 (1128)
++++++++|.. ..+|++++|++++|++++|+||||||||||+++|.|++.|++|+|.+.|.|+..... ...|++
T Consensus 31 e~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 31 ESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp TCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 34456666643 258999999999999999999999999999999999999999999999998864321 235778
Q ss_pred eEEEcCCCccccc----------c---Hhhcc--------c------cCCCCCHHHHHHHHHH-------------hcHH
Q 001189 821 LGIIPQSPVLFSG----------T---VRFNL--------D------PFSEHSDADLWEALER-------------AHLK 860 (1128)
Q Consensus 821 i~~v~Q~~~lf~~----------T---v~~nl--------~------~~~~~~~~~i~~~l~~-------------~~l~ 860 (1128)
+++++|++.+|.. | +++.+ + ++-..++..+.+.++. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999988741 1 11111 0 0000011111100000 0000
Q ss_pred HHHHHccCCcc-hhhhc-CCCCCChhHHHHHHHHHHhcc------CCCEEEEeccccCCCHHHHHHHHHHHHHH
Q 001189 861 DAIRRNSLGLD-AQVSE-AGENFSVGQRQLLSLSRALLR------RSKILVLDEATAAVDVRTDALIQKTIREE 926 (1128)
Q Consensus 861 ~~i~~lp~Gld-t~v~e-~g~~LSgGqrqrl~lArall~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~ 926 (1128)
..+...|.-+- ..++. ....+|+|++|++..|++++. +|+++. ||++|......+++.|.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00111111000 01110 112478999999999999998 688876 9999999999999999874
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=153.79 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=100.7
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHH--hhhceEEEcCCCcccc-cc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMD--LRKILGIIPQSPVLFS-GT 834 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~T 834 (1128)
+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|+.... +.. .|+.|+|++|++.++. .|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875531 112 3678999999987654 47
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCC-----CCChhHHHHHHHHHHhcc-CC-CEEEEec
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGE-----NFSVGQRQLLSLSRALLR-RS-KILVLDE 906 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~-----~LSgGqrqrl~lArall~-~p-~iLlLDE 906 (1128)
+++|+.... . .|+|..+ ...|. ++-.--+|++.++|++.. .| .+||..+
T Consensus 364 V~e~l~~a~-----------~------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 364 IFDAIQAAK-----------A------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHH-----------H------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHH-----------h------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 888775310 0 1111111 11111 011122478888887754 45 3555555
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 907 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 907 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
||++.|.... .+.+.+ .-+.|.+++|| ++.
T Consensus 421 attGq~al~~---ak~f~~-~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHE-AVGLTGITLTK-LDG 450 (503)
T ss_dssp GGGTHHHHHH---HHHHHH-HTCCSEEEEEC-GGG
T ss_pred CcccHHHHHH---HHHHHh-hcCCCEEEEEc-CCC
Confidence 8888655421 122222 13678999999 443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=132.95 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=96.8
Q ss_pred CceeeeeE-EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001189 136 PTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 214 (1128)
Q Consensus 136 ~~L~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 214 (1128)
+.|+.+.. .+++|++++|+|+||||||||++.+++ .+ | +.+.|+..+..+....+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~------~~v~~i~~~~~~~~~~~~~------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--G------KKVAYVDTEGGFSPERLVQ------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--C------SEEEEEESSCCCCHHHHHH------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--C------CcEEEEECCCCCCHHHHHH------------
Confidence 45677665 799999999999999999999999999 21 2 2466776654322222222
Q ss_pred HHHHHHHhCcH--HHHhcCCCCCcccccCCCCCCChH--HHHHHHHHHHHccC-CCEEEEeCcCCCcCHHHH--------
Q 001189 215 YEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYSN-SDVFIFDDPLSALDAHVG-------- 281 (1128)
Q Consensus 215 ~~~~~~~~~l~--~~~~~l~~g~~t~vg~~g~~LSGG--QkqRiaLARal~~~-~~illLDEpts~LD~~~~-------- 281 (1128)
..+..++. +..+.+ .+ ..+|++ |+|+++.+|+++.+ |+++++|||++.+|+...
T Consensus 65 ---~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~ 131 (220)
T 2cvh_A 65 ---MAETRGLNPEEALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAEL 131 (220)
T ss_dssp ---HHHTTTCCHHHHHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHH
T ss_pred ---HHHhcCCChHHHhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHH
Confidence 22221111 111111 01 123444 47789999999986 999999999999997422
Q ss_pred HHHHHHHHcccc-CCcEEEEEccCccc-------------hh-cCCEEEEEeCC
Q 001189 282 RQVFDRCIRGEL-SGKTRVLVTNQLHF-------------LS-QVDRIILVHEG 320 (1128)
Q Consensus 282 ~~i~~~~~~~~~-~~~tvilvtH~~~~-------------l~-~~d~i~~l~~G 320 (1128)
..+++.+..... .+.|+|+++|.... +. .||.|++|++.
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 333333333222 37899999998652 33 48999999754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-13 Score=145.86 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=88.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee--------ecCcEEEEecCCCCCc-ccH----HHHHhcC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV--------IRGTVAYVPQVSWIFN-ATV----RDNILFG 207 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~--------~~~~i~~v~Q~~~l~~-~Tv----~eni~~g 207 (1128)
-..++|++++|+||||||||||+++|+|.++| ..|.+.. .+..++|++|++.+|. .++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 36789999999999999999999999999986 3443221 1124788888876653 233 3333321
Q ss_pred CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHH
Q 001189 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287 (1128)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~ 287 (1128)
. ++.|-.+++ ++.++..++++||| ||+...+.+.+.
T Consensus 91 ~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 G------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp T------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred h------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 1 001101121 23344457999999 999999999875
Q ss_pred HHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 288 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 288 ~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+ . ++.|++++||+++.+.. |+ +.+| .++.+++..
T Consensus 127 l-~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 127 M-P---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp C-T---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred c-c---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 3 2 57899999999988765 32 5666 466666543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-14 Score=173.05 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=116.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc-ccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~ 837 (1128)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -+..+++++|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4788999999999999999999999999999999999999999999986522222 1345777777655211 14444
Q ss_pred ccc------c----CCCCCHHHHHHHHHHhc-------------HHHHHHHc---cCCcchhhh-------cCCCCCChh
Q 001189 838 NLD------P----FSEHSDADLWEALERAH-------------LKDAIRRN---SLGLDAQVS-------EAGENFSVG 884 (1128)
Q Consensus 838 nl~------~----~~~~~~~~i~~~l~~~~-------------l~~~i~~l---p~Gldt~v~-------e~g~~LSgG 884 (1128)
++. | .++..+.+...+++.+. ..+.+.++ +.|+...+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 331 1 13444455555554432 23444443 233333222 122357999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEE--eecCchhhhh-cC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLI--IAHRLNTIID-CD 946 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~--vtH~l~~~~~-~D 946 (1128)
|+||.++|. + | |+|||+.+.+.+++.|.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766543 688875 8999998875 63
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-15 Score=155.29 Aligned_cols=147 Identities=14% Similarity=0.221 Sum_probs=94.3
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCCceeecCcEEE-----------EecCCCCCcccHH
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELP-------------PVSDASAVIRGTVAY-----------VPQVSWIFNATVR 201 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~-------------~~~g~~~~~~~~i~~-----------v~Q~~~l~~~Tv~ 201 (1128)
++|++++|+||||||||||+++|+|+++ |..|.. .+ +.| ++|+++++++++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~---~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~ 77 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE---DG-KDYYFVTREMMQRDIAAGDFIEHAEFS 77 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC---BT-TTBEECCHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc---CC-ceEEEccHHHHHHHHHcCCCEeeeeec
Confidence 5899999999999999999999999875 444321 11 111 2567778888998
Q ss_pred HHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH-HHccCCCEEEEeCcCCCcCHHH
Q 001189 202 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR-AVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 202 eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR-al~~~~~illLDEpts~LD~~~ 280 (1128)
+|+ +|. ..+.+.++++..... .++..+.|..+.... ++ .|| +++.+|++++|||+|+++|.++
T Consensus 78 ~n~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 78 GNL-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TEE-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred Ccc-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 887 663 455666666542211 011122232222110 22 567 7889999999999999999999
Q ss_pred HHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 281 GRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 281 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
++.|.+.+.... ++ +.++| +. ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~-~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAAR-TD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH-HH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH-HH---HHHhh--cc-CCceEEEECCC
Confidence 988877654322 11 34566 22 67899988864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=146.37 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=80.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCCCHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR-IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADL 850 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~i 850 (1128)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.+..... ..+..+++++|.+.+. +.+- ........+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHHH
Confidence 489999999999999999999 88999999999998765432 2367799999988642 1110 001111123
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 851 ~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
.+.++.+ ... .+++..+ .||| +..+|+|+|||||++ ||+.+...+.+.|.+...++
T Consensus 110 ~~~i~~~-----~~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEV-----AQM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHH-----TTT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHH-----HHh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 3332221 111 1222211 4566 778999999999999 99999999999999866678
Q ss_pred EEEEeecCchhh
Q 001189 931 TMLIIAHRLNTI 942 (1128)
Q Consensus 931 Tvi~vtH~l~~~ 942 (1128)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-13 Score=137.61 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcC
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 826 (1128)
++++++|+. ..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 345566643 36899999999999999999999999999999999999 9999999999877521 1112 2 7999
Q ss_pred CCccccccHhhccc
Q 001189 827 SPVLFSGTVRFNLD 840 (1128)
Q Consensus 827 ~~~lf~~Tv~~nl~ 840 (1128)
++.+|..|+.+|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-14 Score=148.81 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=94.1
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc----CC--CCCHHHHHHH
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF----GS--AFEPARYEKA 218 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~----g~--~~~~~~~~~~ 218 (1128)
.++|++++|+||||||||||+++|+|+++|. | ..+++++|+...+..+..+|+.. +. .++...+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL 91 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH
Confidence 4789999999999999999999999999875 3 35899999998888888777631 11 1222222222
Q ss_pred HHHhCcHHHHhcCCCC--CcccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 219 IDVTSLQHDLDLLPGG--DVTEIGERGVNISGGQKQRVSMA-RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 219 ~~~~~l~~~~~~l~~g--~~t~vg~~g~~LSGGQkqRiaLA-Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
+..++.+ ..+.+.+++..+||||+||+++| |+++.++.++++|||.. ..+... -
T Consensus 92 ---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~---~ 148 (208)
T 3c8u_A 92 ---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAI---W 148 (208)
T ss_dssp ---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGT---C
T ss_pred ---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHh---c
Confidence 2222222 44567888999999999999998 88888888888888741 111111 1
Q ss_pred cEEEEEccCccc
Q 001189 296 KTRVLVTNQLHF 307 (1128)
Q Consensus 296 ~tvilvtH~~~~ 307 (1128)
..+|++++..+.
T Consensus 149 d~~i~vd~~~~~ 160 (208)
T 3c8u_A 149 DVSIRLEVPMAD 160 (208)
T ss_dssp SEEEEECCCHHH
T ss_pred CEEEEEeCCHHH
Confidence 467888887765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-13 Score=148.20 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=93.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhcccc----
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDP---- 841 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~---- 841 (1128)
++++++|+|||||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++.. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1244456667777765543 77766632
Q ss_pred -------CCC--CCHHHHHHHHHHhcHHHHHHHccCC------------cchhhhcCCCCCChhHHHHHHHHHHh-ccCC
Q 001189 842 -------FSE--HSDADLWEALERAHLKDAIRRNSLG------------LDAQVSEAGENFSVGQRQLLSLSRAL-LRRS 899 (1128)
Q Consensus 842 -------~~~--~~~~~i~~~l~~~~l~~~i~~lp~G------------ldt~v~e~g~~LSgGqrqrl~lAral-l~~p 899 (1128)
... ....+... +.. ....+ ++.........||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~-l~~--------~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA-LDK--------ICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH-HHT--------TCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHH-HHh--------hcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCC
Confidence 001 11111111 110 00111 11122333456898 55 788 9999
Q ss_pred CEEEEe----ccccCCCHHHHHHHHHHHHHHc
Q 001189 900 KILVLD----EATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 900 ~iLlLD----EpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
++++|| |||+++|..+.+.+.+.|+++.
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999999 9999999999999999987753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=143.28 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=90.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHH--HhcCCCCCCc-----eEEECCEecCC-CChHHhhhceEEEcCCCccccccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERG-----RILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~--l~g~~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
-|++|++++|+||+|||||||++. +.+..+++.| .|++++.+... .....+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 578999999999999999999994 4566666444 88888865311 111223344555443 44555
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHHHH
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRTD 916 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~t~ 916 (1128)
+.+......+. +.+.+.-++.++ .+|+++++||||+.+|.+..
T Consensus 247 i~~~~~~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 54322222111 112222222222 47999999999999997543
Q ss_pred ------------HHHHHHHHHHc--CCcEEEEeecCch-------------------hhhh-cCEEEEEeCCE
Q 001189 917 ------------ALIQKTIREEF--KSCTMLIIAHRLN-------------------TIID-CDRILLLDSGR 955 (1128)
Q Consensus 917 ------------~~i~~~l~~~~--~~~Tvi~vtH~l~-------------------~~~~-~D~i~vl~~G~ 955 (1128)
..+.+.|+++. .++|||+|+|... .+.+ ||.++.|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44555666543 3799999999822 2344 89999998653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=141.30 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=65.9
Q ss_pred CCChhHHHHH------HHHHHhccC-CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEe
Q 001189 880 NFSVGQRQLL------SLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 880 ~LSgGqrqrl------~lArall~~-p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
.||||||||+ ++||++..+ |++|||||||++||+.+...+.+.|++...+++||+|||+++....||++++|+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 5999999987 668999999 999999999999999999999999998655679999999987555599999997
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-13 Score=155.01 Aligned_cols=206 Identities=9% Similarity=0.011 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC---CCCCCcE---------EE
Q 001189 55 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPL---TSGLPAI---------SI 122 (1128)
Q Consensus 55 ~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~i---------~~ 122 (1128)
+.++.+.+..++.++..+..| .+....+.+..+..+..|+++++ ++......+.. ......+ .|
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f 138 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLEDYAQQGFF 138 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHHHHHhcCCc
Confidence 678999988888777766555 22222222223334456777666 21111100000 0001124 67
Q ss_pred EeEEEE---eCCCCCCCce---------eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------
Q 001189 123 RNGYFS---WDSKAERPTL---------LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------- 181 (1128)
Q Consensus 123 ~~~~f~---~~~~~~~~~L---------~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------- 181 (1128)
++++|+ |++. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.+..
T Consensus 139 ~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~ 217 (361)
T 2gza_A 139 KHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP 217 (361)
T ss_dssp SCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT
T ss_pred Cccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc
Confidence 888888 7521 23455 9999999999999999999999999999999999997654321
Q ss_pred -ecCcEEEEe-cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 182 -IRGTVAYVP-QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 182 -~~~~i~~v~-Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
.+..++|++ |++.+ .++++..+|-.|+++
T Consensus 218 ~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 218 DHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLLRSC 248 (361)
T ss_dssp TCSSEEEEECC-----------------------------------------------------------CCHHHHHHHH
T ss_pred ccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHHHHH
Confidence 122344544 33210 123455678889999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+..+|+.+++|||.. .+..+ .++.+- ....|++.++|..+....+||+..+..|.
T Consensus 249 l~~~pd~~l~~e~r~---~~~~~-~l~~l~---~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 249 LRMKPTRILLAELRG---GEAYD-FINVAA---SGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp TTSCCSEEEESCCCS---THHHH-HHHHHH---TTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HhcCCCEEEEcCchH---HHHHH-HHHHHh---cCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999986 23222 222221 22357889999987666689998887653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=137.59 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=104.4
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----hhhc--eEEEcCCCccccc-cHhhccc
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LRKI--LGIIPQSPVLFSG-TVRFNLD 840 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-Tv~~nl~ 840 (1128)
.++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+......+ ++++ +.+++|++.++.. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998766433 2333 5699999887754 7888774
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCC--CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGE--NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~--~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
.. ... +.|.. +...|. .-..=.++.-.++|++..++++++||.+|. .|.
T Consensus 206 ~~-----------~~~------------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~---- 257 (328)
T 3e70_C 206 HA-----------KAR------------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI---- 257 (328)
T ss_dssp HH-----------HHH------------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH----
T ss_pred HH-----------Hhc------------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH----
Confidence 21 000 11110 111111 011123445568999998888999996654 322
Q ss_pred HHHHHHHHHc--CCcEEEEeecCchhh---------hh-cCEEEEEeCCEEE
Q 001189 918 LIQKTIREEF--KSCTMLIIAHRLNTI---------ID-CDRILLLDSGRVL 957 (1128)
Q Consensus 918 ~i~~~l~~~~--~~~Tvi~vtH~l~~~---------~~-~D~i~vl~~G~i~ 957 (1128)
.+.++... .+.|+|++||--.+. .. .-.|..+..|+-+
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 22233222 478999999943221 11 3456666666644
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-14 Score=164.03 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=90.8
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~ 820 (1128)
+++++++.|.. ..+|+++ + .++|++++|+||||||||||+++|+|++.|++|+|.+.|.++... +...+++.
T Consensus 145 ~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 34444444421 1367777 4 389999999999999999999999999999999999998877421 11223445
Q ss_pred eEEEc---------CCCccc--c-----ccHhhccccC----------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001189 821 LGIIP---------QSPVLF--S-----GTVRFNLDPF----------SEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874 (1128)
Q Consensus 821 i~~v~---------Q~~~lf--~-----~Tv~~nl~~~----------~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v 874 (1128)
+++.+ |+|.++ . .|+.+++... ...+..+..+.+...++ +...
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl-----------~~~~ 289 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI-----------EPFL 289 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC-----------CHHH
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCC-----------cHHH
Confidence 55544 888652 2 2677666421 00111222223333332 2221
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
...+|||||+|| |||+++.+|++..
T Consensus 290 --~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 --ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 224699999999 9999999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-11 Score=139.48 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=80.6
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEEC-CEecCCCChHHhhhceEEEcCCCccccc-cHh
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILID-GFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 836 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~ 836 (1128)
-++++++. .+|++++|+||||||||||+++|.|... |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999987 76542 1345679999999988765 898
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
++-. . ....+++.+. +.++++. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l-~-~l~~~e~~~~-----~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL-W-HLEPEQITQG-----FVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC-C-CCCHHHHHHT-----SGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh-c-CCCHHHHHHH-----HHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 1 2333333221 2222222 244444455556899 9999999999864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-11 Score=142.01 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEe
Q 001189 245 NISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 318 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 318 (1128)
.||||||||++||++|+ .+|++|||||||++||+...+.+.+.+......+.++|+|||+...+..||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 689999999999999999999998865443334789999999988888899999985
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=137.80 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=64.6
Q ss_pred CCCChHHHHHH------HHHHHHccC-CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEE
Q 001189 244 VNISGGQKQRV------SMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 316 (1128)
Q Consensus 244 ~~LSGGQkqRi------aLARal~~~-~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 316 (1128)
..||||||||+ ++||+|..+ |+++||||||++||+...+.+.+.+.. ...+.++|+|||+++....||++++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~-~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK-VKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH-CCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH-hccCCeEEEEEChHHHHhhCCEEEE
Confidence 58999999988 667999999 999999999999999999999886544 3345799999999987677999999
Q ss_pred Ee
Q 001189 317 VH 318 (1128)
Q Consensus 317 l~ 318 (1128)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=121.03 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=68.7
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
+|+++ +|+.++|+||||+|||||++++.+.+.+ +| .+++++.++..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-------------------------- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-------------------------- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------------
Confidence 56666 8999999999999999999999999987 56 55554322110
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
. +++.+|++|+||||++ +|...++
T Consensus 78 ------~-------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 78 ------T-------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp ------C-------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred ------H-------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 0 2356899999999998 6655588
Q ss_pred HHHHHHHHHc-CCcE-EEEeecC
Q 001189 918 LIQKTIREEF-KSCT-MLIIAHR 938 (1128)
Q Consensus 918 ~i~~~l~~~~-~~~T-vi~vtH~ 938 (1128)
.+.+.+.... .+++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887754 3577 7888875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-12 Score=132.55 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=77.6
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 213 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~ 213 (1128)
.+++|++++|+|+||||||||+++|+|. |..|.+.. .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 43342211 1122566676544 3568888875421
Q ss_pred HHHHHHHHhCcHHHHhcCCC--CCcc--cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 214 RYEKAIDVTSLQHDLDLLPG--GDVT--EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 214 ~~~~~~~~~~l~~~~~~l~~--g~~t--~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
. .....+-...++.... +... ..+.....+|+||+||+++||++.++|+++ +|+...+.+++.+
T Consensus 77 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 G---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp H---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred H---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 0 0001110000110000 0000 012234579999999999999999999876 5888777777644
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=128.26 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=75.4
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE 844 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~ 844 (1128)
+|.+++|+.++|+||||+|||||++++++.+.|.+|...+ + -+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~---------~~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F---------FDTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------EEHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------EEHH--------
Confidence 4567889999999999999999999999998876663110 0 0111
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHH
Q 001189 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTI 923 (1128)
Q Consensus 845 ~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l 923 (1128)
++.+.+.. .... . ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 77 ----~~~~~~~~-----~~~~-----------~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 77 ----DLIFRLKH-----LMDE-----------G--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ----HHHHHHHH-----HHHH-----------T--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ----HHHHHHHH-----HhcC-----------c--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 11111110 0000 0 010 1112245899999999995 89999999999999
Q ss_pred HHHc-CCcEEEEeecCch
Q 001189 924 REEF-KSCTMLIIAHRLN 940 (1128)
Q Consensus 924 ~~~~-~~~Tvi~vtH~l~ 940 (1128)
.... .++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 8765 6899999999864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-11 Score=139.11 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhh-hceEEEcCCCccc------cccHh
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLR-KILGIIPQSPVLF------SGTVR 836 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~Tv~ 836 (1128)
.+.+|++++|+||||||||||+++|. +..|++|+|.+ +|.+++.... ..+ +.+|+++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876432 223 3699999999542 3478
Q ss_pred hcc--cc---------CCC--C---CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 837 FNL--DP---------FSE--H---SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 837 ~nl--~~---------~~~--~---~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+ .+ +.. + ....+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 777 22 111 1 2345777777777654 333332 359998899999987
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-12 Score=145.55 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=103.5
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCC-cccc-ccHh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVR 836 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~Tv~ 836 (1128)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999887 79999999887766666778899999986 3333 3677
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccC------
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA------ 910 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~------ 910 (1128)
+|++......... +. . ...+.+.. .+ ..|||||+||..+++|+.++|++| |||+.-
T Consensus 110 Deid~~~~~r~~~--~~-~--~~~~~~~~-------~l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--ET-G--ASVRVVNQ-------LL----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CTTHHHH-------HH----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--cc-h--HHHHHHHH-------HH----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8887543211100 00 0 00011111 11 359999999999999999999975 999752
Q ss_pred ------CCHHHHHHHHHHHH
Q 001189 911 ------VDVRTDALIQKTIR 924 (1128)
Q Consensus 911 ------lD~~t~~~i~~~l~ 924 (1128)
-|.+.+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 25666666666543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-12 Score=146.94 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=94.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEE-------------------cCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCc
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTI-------------------PPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERG 800 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i-------------------~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p~~G 800 (1128)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4589999999993 6899999988 9999999999999999999999999998 9999
Q ss_pred eEEE---CCEecCCCChHHhhhceEEEcCCCcccc-ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 801 RILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 801 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
+|.+ ||.+. + ...++.++++ |+..++. .|+.+|+.. + ..+..|-. .+.-
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~------------~---------~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKF------------V---------SDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHH------------H---------HHHTTTCS-CEEE
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHH------------H---------HHHhCCCC-ceec
Confidence 9999 88764 2 2456678888 7665443 256555432 1 11111111 0000
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
.....+.+ +|+..+.+.+.+++++|+|.|....+.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00111222 333333355678899999999887663
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=119.44 Aligned_cols=112 Identities=23% Similarity=0.201 Sum_probs=72.6
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
+|.+++|+.++|+||||+|||||++++++.+.|..|... .|+ +..+.+ +.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------~~~---------~~~~~~--------~~~~~~--- 85 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------YFF---------DTKDLI--------FRLKHL--- 85 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------CEE---------EHHHHH--------HHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------EEE---------EHHHHH--------HHHHHH---
Confidence 467788999999999999999999999999865554321 121 111211 011111
Q ss_pred hCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHHccccCCcEEEE
Q 001189 222 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVL 300 (1128)
Q Consensus 222 ~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~~~~~~~~tvil 300 (1128)
... + ... -....+.+|++|+||||++ ++|+...+.+++.+-.....|+++|+
T Consensus 86 ------~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 86 ------MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTII 138 (180)
T ss_dssp ------HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ------hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 100 0 000 0112245899999999995 89999888777644333346899999
Q ss_pred EccCcc
Q 001189 301 VTNQLH 306 (1128)
Q Consensus 301 vtH~~~ 306 (1128)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=117.89 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=82.2
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|++++|+||||||||||++.|++ ..+|..|+. .+.+.|+.-+..+ +.+++.+.++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~---~~~~~~i~~~~~~---------------~~~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGG---EGKAMYIDTEGTF---------------RPERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCC---CCeEEEEECCCCc---------------CHHHHHHHHHH
Confidence 589999999999999999999999999 455532211 1345565544321 11222222222
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEeCcCCCcCHH-------H-----HHHH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGGQKQR-VSMARAVY--SNSDVFIFDDPLSALDAH-------V-----GRQV 284 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGGQkqR-iaLARal~--~~~~illLDEpts~LD~~-------~-----~~~i 284 (1128)
.+... .++.+ ... ...++.+... +.-++.++ .+|+++++|||++.+|+. . ...+
T Consensus 82 ~g~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 82 YGLSGSDVLDNV-----AYA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp TTCCHHHHHHTE-----EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred cCCCHHHHhhCe-----EEE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 22110 01110 000 1245554332 33333333 589999999999999985 3 2234
Q ss_pred HHHHHcccc-CCcEEEEEccCccch-------------------h-cCCEEEEEeCC
Q 001189 285 FDRCIRGEL-SGKTRVLVTNQLHFL-------------------S-QVDRIILVHEG 320 (1128)
Q Consensus 285 ~~~~~~~~~-~~~tvilvtH~~~~l-------------------~-~~d~i~~l~~G 320 (1128)
+..+..... .|.|+|+++|..... . .||.+++|++|
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 443333222 489999999965432 2 47999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-13 Score=143.11 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------cCcEEEEecCCCC-CcccHHHHHhcCCCCCHHHHHHHHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------RGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAID 220 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------~~~i~~v~Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~~ 220 (1128)
|++++|+||||||||||++.|++ |..|....- ...+++++|.+.. ...++++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 67899999999999999999998 333422211 1124566665432 245777776531 000000
Q ss_pred HhCcHHHHhcCCCCCcccccCCCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc
Q 001189 221 VTSLQHDLDLLPGGDVTEIGERGVNI--SGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292 (1128)
Q Consensus 221 ~~~l~~~~~~l~~g~~t~vg~~g~~L--SGGQkqRiaLAR------al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~ 292 (1128)
.+....++.. .+.. .. +.-..+ |+|++|++.++. +++.+++...+|+ ++|+...+. ++.+....
T Consensus 72 -~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0000000000 0000 00 001134 888888888777 8888888777783 789987777 66554433
Q ss_pred cCCcEEEEEccC-ccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 293 LSGKTRVLVTNQ-LHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 293 ~~~~tvilvtH~-~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
..+.++|.+||. ++.+.. ||+|+ ++|+++..|+++.+.
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 346899999998 888775 79998 999999999876553
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.2e-12 Score=136.29 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCCceee--------cCcEEEEecCCCCC-cccHHHHHhc--------
Q 001189 147 VGSLVAIVGGTGEGKTSLISAML---GELPPVSDASAVI--------RGTVAYVPQVSWIF-NATVRDNILF-------- 206 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~---G~~~~~~g~~~~~--------~~~i~~v~Q~~~l~-~~Tv~eni~~-------- 206 (1128)
++++++|+|+||||||||+++|+ |...|+.|....- ...+.+++|++.++ ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 9988876543221 11245566776654 5688888853
Q ss_pred -----CCCCCHHHHHHHHHHhCcH--HHHhcCCCC-CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CcC
Q 001189 207 -----GSAFEPARYEKAIDVTSLQ--HDLDLLPGG-DVTEIGERGVNISGGQKQRVSMARAV-YSNSDVFIFD----DPL 273 (1128)
Q Consensus 207 -----g~~~~~~~~~~~~~~~~l~--~~~~~l~~g-~~t~vg~~g~~LSGGQkqRiaLARal-~~~~~illLD----Ept 273 (1128)
|.+....+........... -.++.-+.. ...........||| |+ ||+ +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 1111221111111101100 000000000 00011223457999 66 788 9999999999 999
Q ss_pred CCcCHHHHHHHHHHHH
Q 001189 274 SALDAHVGRQVFDRCI 289 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~ 289 (1128)
++||+.+.+.+.+.+.
T Consensus 179 ~~ld~~~~~~i~~~l~ 194 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLR 194 (246)
T ss_dssp BCCGGGSHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHH
Confidence 9999998887776543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-11 Score=121.18 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=62.5
Q ss_pred eEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCc-------EEEEecCCCCC
Q 001189 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------VAYVPQVSWIF 196 (1128)
Q Consensus 124 ~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~-------i~~v~Q~~~l~ 196 (1128)
++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|.+ |++|.+..-... -.+++|++.++
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 4455554 246899999999999999999999999999999999999 877754221000 12799998888
Q ss_pred cccHHHHHh-cC
Q 001189 197 NATVRDNIL-FG 207 (1128)
Q Consensus 197 ~~Tv~eni~-~g 207 (1128)
..|+.||+. +|
T Consensus 88 ~ltv~e~l~~~g 99 (158)
T 1htw_A 88 RLADPEELEFMG 99 (158)
T ss_dssp TCSCTTHHHHST
T ss_pred cCCcHHHHHHcC
Confidence 889999985 45
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=113.87 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=67.1
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
+|+++ +|+.++|+||+|||||||+++++|++.+ .|. .+.|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~------~~~~~~~~~~~~~------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK------NAAYIDAASMPLT------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC------CEEEEETTTSCCC-------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC------cEEEEcHHHhhHH-------------------
Confidence 45555 8999999999999999999999998876 331 3556655432111
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCc
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~ 296 (1128)
+++.+|++|+||||++ +|...++.+++.+-....+|+
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 2356899999999998 666557777764433334567
Q ss_pred E-EEEEccC
Q 001189 297 T-RVLVTNQ 304 (1128)
Q Consensus 297 t-vilvtH~ 304 (1128)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 7777774
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-11 Score=135.49 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=76.4
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCcee---------ecCcEEEEecCCCCC-cccHHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNI 204 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni 204 (1128)
.-++++++. .+|++++|+|+||+|||||+++|+|... |..|.+.. .+..+++++|+++++ ..||+++.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357777775 4899999999999999999999999998 88775432 234689999999887 56999964
Q ss_pred hcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+.+ .+.+...+. ..+.++.+. .....+....+|| ||+||++||+++.
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~g--l~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYLG--HCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGTT--CSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHcC--CchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 432 333332211 112222211 1111233346899 9999999999753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-10 Score=136.31 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=91.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhcc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl 839 (1128)
--++++|+++.|++++|+|+||||||||+++|++... .+.+.+..++ ...+++++++.. ...++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 3589999999999999999999999999999999843 3455444433 335777777641 011222221
Q ss_pred ccC------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 840 DPF------SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 840 ~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
-.. ...... ..+.++++. ..+..+ ++. .....+||+|++|++.+|++|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~era~--~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIARTR--VLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTSSS--EEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhHH-HHHHHHHHH--hhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 110 011111 111111110 011111 110 111235999999999999999999999999 99998
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeec
Q 001189 914 RTDALIQKTIREEF-KSCTMLIIAH 937 (1128)
Q Consensus 914 ~t~~~i~~~l~~~~-~~~Tvi~vtH 937 (1128)
.....+.+..+... .+.+++.||.
T Consensus 282 ~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 76633333333222 3556666654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=135.55 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=93.7
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cc
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NA 198 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~ 198 (1128)
-+++||++++|++++|+|+||||||||++.|+|++.+.+|.+... +..|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 458899999999999999999999999999999998876654321 23589999998765 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc-CC-CEEEEeCcCCCc
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS-NS-DVFIFDDPLSAL 276 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~-~~-~illLDEpts~L 276 (1128)
|+++||.++.. .+.+..+-...+.... -.+|-.--+|++.++|++.. .| .++|..||+++.
T Consensus 363 tV~e~l~~a~~------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHh------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 99999976411 0000000000110000 01233344688899998754 45 466667799887
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcc
Q 001189 277 DAHVGRQVFDRCIRGELSGKTRVLVTN 303 (1128)
Q Consensus 277 D~~~~~~i~~~~~~~~~~~~tvilvtH 303 (1128)
|+.....-|.. ..+.|.|++||
T Consensus 426 ~al~~ak~f~~-----~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQAKLFHE-----AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHHH-----HTCCSEEEEEC
T ss_pred HHHHHHHHHHh-----hcCCCEEEEEc
Confidence 76533222221 23678999999
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-10 Score=129.94 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=68.0
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhhhceEEEcCCCc-------------
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPV------------- 829 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 829 (1128)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 9999876542211236899999985
Q ss_pred ---cccc-cHhhccccCC----CCCHHHHHHHHHHhcH-HHHHHHcc
Q 001189 830 ---LFSG-TVRFNLDPFS----EHSDADLWEALERAHL-KDAIRRNS 867 (1128)
Q Consensus 830 ---lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l-~~~i~~lp 867 (1128)
+|.. |+ +|+.+.. ......+.++|+..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3543 77 8887531 1234568889999888 46666655
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-12 Score=139.62 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=56.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEecCCCChHH-hhhceEEEcCCCccccc-cH
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSG-TV 835 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~-g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-Tv 835 (1128)
...+++||++++|+++||+||||||||||+++|. |++++ ..++.++...++.. .+..+.|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4578999999999999999999999999999999 99843 12233222211111 11224456666554432 33
Q ss_pred hhcccc----CCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh--hHHHHH-HHHH-HhccCCCEEEE
Q 001189 836 RFNLDP----FSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV--GQRQLL-SLSR-ALLRRSKILVL 904 (1128)
Q Consensus 836 ~~nl~~----~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg--Gqrqrl-~lAr-all~~p~iLlL 904 (1128)
.+++.. +.. ...+++.+.++... ...+. ..+.| .-++++ .-++ .++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 333321 110 01122333333210 00000 00101 113333 1122 34567788888
Q ss_pred eccccCCCHHHHHHHHHHHHH
Q 001189 905 DEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~ 925 (1128)
+|++.+.|..+++.+.+.|.+
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~ 175 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKG 175 (231)
T ss_dssp HHC--------------CHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH
Confidence 999999998888888777764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-12 Score=148.82 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=111.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEecCCCC-hHHhhhce---EEEcCCCcc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR------------IVELERGRILIDGFDIAKFG-LMDLRKIL---GIIPQSPVL 830 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g------------~~~p~~G~I~i~g~~i~~~~-~~~~r~~i---~~v~Q~~~l 830 (1128)
.+++|+++||+|+||+|||||+++|+| ..+|+.|.|.++|..+..+. ...-++.+ .++++.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999874321110 00011222 467788877
Q ss_pred ccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecc
Q 001189 831 FSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEA 907 (1128)
Q Consensus 831 f~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p--~iLlLDEp 907 (1128)
..+ +..++|. . .....++.+.. +... +|..-......+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~------~-~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG------N-AFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC------H-HHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH------H-HHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 654 4444442 0 11111111110 0000 0000011222345542 88 99999999
Q ss_pred ccCCCHHHHHHHHHHHHHH-cC-CcEEEEeecCchhhhh-cCEEE-EEeCC-EEEEecChh
Q 001189 908 TAAVDVRTDALIQKTIREE-FK-SCTMLIIAHRLNTIID-CDRIL-LLDSG-RVLEYDTPE 963 (1128)
Q Consensus 908 Ts~lD~~t~~~i~~~l~~~-~~-~~Tvi~vtH~l~~~~~-~D~i~-vl~~G-~i~~~g~~~ 963 (1128)
+..+|++..+..++.++.. .. +.|+ ++|.+..+.. ||++. +|++| +++..|+..
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999998876 44 4554 3999999887 99999 99999 887666543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-10 Score=135.52 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=91.6
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc-eeecCcEEEEecCCCCCcccHHHHHhcC------CCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG------SAF 210 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-~~~~~~i~~v~Q~~~l~~~Tv~eni~~g------~~~ 210 (1128)
-++++|+++.|+.++|+|+||||||||+++|+|..+...+.. ..+...++++.|+.. ...++.|+.-+. ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhh
Confidence 579999999999999999999999999999999853211111 113345788877641 112222222211 111
Q ss_pred CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
.. .+.+.++.|.. .+..+.- + .+...+||+||+||+++|++|...|.++++ +.+|+... ..++.+..
T Consensus 226 ~~-~fl~~~era~~--lL~vvDl---s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~ 292 (416)
T 1udx_A 226 GL-EFLRHIARTRV--LLYVLDA---A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALAD 292 (416)
T ss_dssp CH-HHHHHHTSSSE--EEEEEET---T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHH
T ss_pred hH-HHHHHHHHHHh--hhEEeCC---c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHH
Confidence 11 12222221211 0111100 0 122347999999999999999999999999 99998755 33333333
Q ss_pred cc-cCCcEEEEEcc
Q 001189 291 GE-LSGKTRVLVTN 303 (1128)
Q Consensus 291 ~~-~~~~tvilvtH 303 (1128)
.. ..+.+++++|.
T Consensus 293 ~l~~~g~~vi~iSA 306 (416)
T 1udx_A 293 ALAREGLAVLPVSA 306 (416)
T ss_dssp HHHTTTSCEEECCT
T ss_pred HHHhcCCeEEEEEC
Confidence 22 23567777764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-11 Score=135.58 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=87.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC--------CCCCCCcee----e-------------------c----CcEEEE---e
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL--------PPVSDASAV----I-------------------R----GTVAYV---P 190 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~--------~~~~g~~~~----~-------------------~----~~i~~v---~ 190 (1128)
++++|+|+||||||||++.|+|.. .|+.|.+.. + + ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999987 566664321 0 1 125666 6
Q ss_pred cCCCC-CcccHHHHHhcCCCCCHHHHHHHH-------HHhCcHHHHhcCCCCCcccccC-----CCCCCChHHHHHHHHH
Q 001189 191 QVSWI-FNATVRDNILFGSAFEPARYEKAI-------DVTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMA 257 (1128)
Q Consensus 191 Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~-------~~~~l~~~~~~l~~g~~t~vg~-----~g~~LSGGQkqRiaLA 257 (1128)
|++.+ ++.+|.||+.++.+ ..+.+.+ +...+... .+.++- .-.+|||||+||+..+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~--------l~~vd~~~~~~~~~~ls~g~~Q~~~ad 153 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGV--------IALVDAVHADEQMNQFTIAQSQVGYAD 153 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEE--------EEEEETTTHHHHHHHCHHHHHHHHTCS
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCE--------EEEEEHHHHHHHHhhchHHHHHHHhCC
Confidence 77654 67888888877643 2211111 11111111 111111 1126899999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++++.+||++ ||| +.+.+.+.. ...+.|++++||+...+
T Consensus 154 ~ill~k~dl~--de~---------~~l~~~l~~-l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 154 RILLTKTDVA--GEA---------EKLHERLAR-INARAPVYTVTHGDIDL 192 (318)
T ss_dssp EEEEECTTTC--SCT---------HHHHHHHHH-HCSSSCEEECCSSCCCG
T ss_pred EEEEECcccC--CHH---------HHHHHHHHH-hCCCCeEEEecccCCCH
Confidence 9999999987 888 334433322 23578999999975433
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=120.32 Aligned_cols=132 Identities=15% Similarity=0.051 Sum_probs=90.1
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 78 ~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------- 142 (295)
T 1ls1_A 78 VYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------- 142 (295)
T ss_dssp HHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------
T ss_pred HHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------
Confidence 344455555432 1 677887 8999999999999999999999999999999999988776431100
Q ss_pred cCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
+ .+....+.. |++-.. .+......+.+|.+|+++...+++++|+
T Consensus 143 ------------~-----------ql~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vii 186 (295)
T 1ls1_A 143 ------------E-----------QLRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLILV 186 (295)
T ss_dssp ------------H-----------HHHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ------------H-----------HHHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000001110 111110 0111234456788999998899999999
Q ss_pred ecc-ccCCCHHHHHHHHHHHHHHc
Q 001189 905 DEA-TAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 905 DEp-Ts~lD~~t~~~i~~~l~~~~ 927 (1128)
||| ++++|......+.+..+...
T Consensus 187 Dtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 187 DTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred eCCCCccccHHHHHHHHHHhhhcC
Confidence 999 99999988888888776643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-11 Score=148.37 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=99.6
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----e----cCcEEEEecCCCCC-cccHHHHHh
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----I----RGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----~----~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
.+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.... + ...+++..|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678899999999999999999999999999999999998754321 1 12366777665422 246776653
Q ss_pred c-----------CCCCCHHHHHHHHHHh--C-----------cHHHH---hcCCCCCccccc-------CCCCCCChHHH
Q 001189 206 F-----------GSAFEPARYEKAIDVT--S-----------LQHDL---DLLPGGDVTEIG-------ERGVNISGGQK 251 (1128)
Q Consensus 206 ~-----------g~~~~~~~~~~~~~~~--~-----------l~~~~---~~l~~g~~t~vg-------~~g~~LSGGQk 251 (1128)
. |.--+.+ ...+++++ + ..+.+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 2 2212222 32333332 1 11111 222222111111 12345899999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEE--EccCccchh
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL--VTNQLHFLS 309 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvil--vtH~~~~l~ 309 (1128)
||.++|. + | +++||+...+.+++.+......++|+++ +||+++.+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 9987641 2 6 9999998766655544433345789875 899988765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-10 Score=132.73 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
+++++++.|.. +.+|+++||++++|++++|+|+||||||||++.|+|.+.|++|.+.. .+.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34455666642 46899999999999999999999999999999999998877654321 234
Q ss_pred cEEEEecCCCCCc----------c---cHHHHHh-c---CCC----------CCHHHHHHHHHHhCc---------HHHH
Q 001189 185 TVAYVPQVSWIFN----------A---TVRDNIL-F---GSA----------FEPARYEKAIDVTSL---------QHDL 228 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~----------~---Tv~eni~-~---g~~----------~~~~~~~~~~~~~~l---------~~~~ 228 (1128)
+++|++|++.+|. | +++|.+. + +.+ ..+..+. +.+.+ .+.+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~---~~~d~vl~v~d~~~~~~~ 184 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDEL 184 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC----
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH---hhCCEEEEEEcCCCcccH
Confidence 5899999987763 2 2333321 0 100 0111110 11100 0000
Q ss_pred h-------cCCCC-Cccccc-CCCCCCChHHHHHHHHHHHHcc------CCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 229 D-------LLPGG-DVTEIG-ERGVNISGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 229 ~-------~l~~g-~~t~vg-~~g~~LSGGQkqRiaLARal~~------~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+ ..+.- ..+.+. .....+|+|++|++..|++++. +|+++. +|++|......+++.+..
T Consensus 185 ~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 185 QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp --CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0 00100 001111 0123589999999999999987 688876 999999999999886543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8.2e-10 Score=130.51 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=63.0
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH--------
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-------- 816 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-------- 816 (1128)
.+.++++.. ..+|+++||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 455555543 1589999999999 999999999999999999999999999999999999987654331
Q ss_pred hhhceEEEcCCC
Q 001189 817 LRKILGIIPQSP 828 (1128)
Q Consensus 817 ~r~~i~~v~Q~~ 828 (1128)
++..+.++.+++
T Consensus 83 ~~~~~~~~~~~~ 94 (483)
T 3euj_A 83 LKAGVCYAVLET 94 (483)
T ss_dssp SCSSEEEEEEEE
T ss_pred cCCCceEEEEeh
Confidence 223356666665
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-11 Score=139.93 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=77.4
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee----------------cCcEEEE---------ec
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------RGTVAYV---------PQ 191 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~~~i~~v---------~Q 191 (1128)
+|+++ + .++|++++|+||||||||||+++|+|+++|.+|.+... +..+++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 37899999999999999999999999998887654321 1224443 38
Q ss_pred CCCCC--c-----ccHHHHHhcCC----------CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 192 VSWIF--N-----ATVRDNILFGS----------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 192 ~~~l~--~-----~Tv~eni~~g~----------~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+|.++ . .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 87652 2 48888886521 11222222234444443321 124799999999
Q ss_pred HHHHHHccCCCEEEE
Q 001189 255 SMARAVYSNSDVFIF 269 (1128)
Q Consensus 255 aLARal~~~~~illL 269 (1128)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.7e-10 Score=116.59 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=57.1
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhccc
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD 840 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~ 840 (1128)
|+++++|+++||+||||||||||+++|.|++ | .+.++|.++...+....+..++|++|++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 5778899999999999999999999999996 3 588898888776655567789999999988765 6666553
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=121.11 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=86.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHH--HHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLIS--AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~--~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
-|++|++++|+||+|||||||++ ++.+..+++.|+. .+.+.|+.-+.. ++..++.+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~~~viyid~E~~---------------~~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---EGKCLYIDTEGT---------------FRPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---CCcEEEEeCCCc---------------cCHHHHHHHHHH
Confidence 68999999999999999999999 4457776655531 234556554321 223333333344
Q ss_pred hCcHHH--HhcCCCCCcccccCCCCCCCh-HHHHHHHHHHHHc--cCCCEEEEeCcCCCcCHHHH------------HHH
Q 001189 222 TSLQHD--LDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVY--SNSDVFIFDDPLSALDAHVG------------RQV 284 (1128)
Q Consensus 222 ~~l~~~--~~~l~~g~~t~vg~~g~~LSG-GQkqRiaLARal~--~~~~illLDEpts~LD~~~~------------~~i 284 (1128)
.++... ++.+ .+.. ..++ .|.+.+.-++.++ .+|+++++|||++.+|++.. ..+
T Consensus 236 ~gl~~~~vleni------~~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 236 FGLDPDDALNNV------AYAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred cCCChHhHhhcE------EEec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 443211 1110 0100 1122 3344444444443 46999999999999997533 344
Q ss_pred HHHHHccc-cCCcEEEEEccCcc-------------------chhc-CCEEEEEeCC
Q 001189 285 FDRCIRGE-LSGKTRVLVTNQLH-------------------FLSQ-VDRIILVHEG 320 (1128)
Q Consensus 285 ~~~~~~~~-~~~~tvilvtH~~~-------------------~l~~-~d~i~~l~~G 320 (1128)
+..+.+.. ..|.|+|+|+|... .+.+ +|.++.|+++
T Consensus 307 l~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 307 MRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 44444332 24899999999832 1233 6888888765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=120.82 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=87.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHH
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA 848 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~ 848 (1128)
++|++++|+|+||+||||++..|++.+.+++| +++.++.+|+. ..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998778 13555555552 222222221
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 927 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~- 927 (1128)
...+. .|++... ..+ +...+.+++++ ++|+++|+| |+++|+.....+.+..+-..
T Consensus 155 ---~~~~~-----------~gl~~~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 155 ---TYAEL-----------LQAPLEV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ---HHHTT-----------TTCCCCB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ---HHHHh-----------cCCCeEe-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 11111 1211111 012 34456667654 899999999 99999877766665543322
Q ss_pred --CCcEEEEe--ecCchhhhh-cCEEEEEeCCEEEE
Q 001189 928 --KSCTMLII--AHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 928 --~~~Tvi~v--tH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
.+.+++++ +|....+.. ++++..+..|.++.
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 898887776 77766566666664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-09 Score=118.83 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=72.0
Q ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC
Q 001189 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 843 (1128)
Q Consensus 764 vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~ 843 (1128)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.+.|..+. ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3455678999999999999999999999999999999999887764320 001
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH---HHHHHhccCCCEEEEecccc
Q 001189 844 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL---SLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 844 ~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl---~lArall~~p~iLlLDEpTs 909 (1128)
+++...++ .. |++. + ...|+|+.|++ ++++++.++|+++|+|||..
T Consensus 149 ----eqL~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11111112 11 2221 1 24689999999 99999999999999999974
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=9e-09 Score=118.07 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc-CCCCCCCCcee----------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHH
Q 001189 150 LVAIVGGTGEGKTSLISAMLG-ELPPVSDASAV----------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G-~~~~~~g~~~~----------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
.+.|+||+|+||||++++|+| ++.|..|.... .+..+++++|.+++. +.+- .+. .+.....+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGN-NDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCC-cchHHHHH
Confidence 389999999999999999999 66776553211 124578888877652 2210 010 11112223
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcE
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~t 297 (1128)
.++.... ..+ ....+ .||| +..+|+++++|||++ ||+.....+.+.+ .....+.+
T Consensus 112 ~i~~~~~-----~~~--~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~l-e~~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVAQ-----MEQ--VDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTM-EKYSKNIR 166 (354)
T ss_dssp HHHHHTT-----TTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHH-HHSTTTEE
T ss_pred HHHHHHH-----hcc--ccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHH-HhhcCCCE
Confidence 2222111 000 00001 4676 778999999999999 9999988887754 33345789
Q ss_pred EEEEccCccch
Q 001189 298 RVLVTNQLHFL 308 (1128)
Q Consensus 298 vilvtH~~~~l 308 (1128)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=8e-09 Score=117.01 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=82.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cccHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNI 204 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni 204 (1128)
..++|++++|+|||||||||+++.|+|.++|.+|.+... +-.+.+++|.+.++ ..+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 447899999999999999999999999999887654321 11366999988776 57999998
Q ss_pred hcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHH
Q 001189 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i 284 (1128)
.++.. ...... .++. ++... .-.. =.++--.++|++..++++++||.++. .|......-
T Consensus 205 ~~~~~----------~~~d~v-liDt-aG~~~-----~~~~---l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~ 263 (328)
T 3e70_C 205 QHAKA----------RGIDVV-LIDT-AGRSE-----TNRN---LMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQ 263 (328)
T ss_dssp HHHHH----------HTCSEE-EEEE-CCSCC-----TTTC---HHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHH
T ss_pred HHHHh----------ccchhh-HHhh-ccchh-----HHHH---HHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHH
Confidence 75310 000000 0111 11000 0000 11222248999999988999995554 444322211
Q ss_pred HHHHHccccCCcEEEEEccC
Q 001189 285 FDRCIRGELSGKTRVLVTNQ 304 (1128)
Q Consensus 285 ~~~~~~~~~~~~tvilvtH~ 304 (1128)
+. ...+.|.|++||-
T Consensus 264 ~~-----~~~~it~iilTKl 278 (328)
T 3e70_C 264 FN-----EAVKIDGIILTKL 278 (328)
T ss_dssp HH-----HHSCCCEEEEECG
T ss_pred HH-----HhcCCCEEEEeCc
Confidence 11 1246899999994
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-10 Score=123.22 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=42.8
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhhhceEEEcCCCcccc-----ccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~Tv~~n 838 (1128)
++.+|++++|+||||+|||||+|+|.|+..|..|+|.+ +|.+++... ...+..+++++|.|.+.. .|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 122223899999997653 367 77
Q ss_pred c
Q 001189 839 L 839 (1128)
Q Consensus 839 l 839 (1128)
|
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-09 Score=120.98 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec-CcEEEEecCCCC------CcccHH
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR-GTVAYVPQVSWI------FNATVR 201 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~-~~i~~v~Q~~~l------~~~Tv~ 201 (1128)
+++.+|++++|+|+||||||||+++|+ ..+|.+|.+.. .+ ..+||++|+|.+ ...|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 355679999999999999999999999 99888775432 11 258999999965 25688
Q ss_pred HHH--hcCC------------CC--CHHHHHHHHHHhCcHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 202 DNI--LFGS------------AF--EPARYEKAIDVTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 202 eni--~~g~------------~~--~~~~~~~~~~~~~l~~-~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
||+ .|+. .. ...++.++++..++.+ ..+..+ ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4531 11 1245677777777764 344333 369998899999987
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-09 Score=113.22 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=87.9
Q ss_pred Cceeee-eEEEcCCcEEEEECCCCCCHHHHHHHH-hcCCCCCCceEEECCEecCCCChHHhhh---ceEEEcCCCccccc
Q 001189 759 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSG 833 (1128)
Q Consensus 759 ~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l-~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~ 833 (1128)
+.|+.+ .--+++|+.++|+||||||||||+..+ .+..+...+.+++++.. +..++++ .+++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 456666 567899999999999999999996544 55555444555565432 3333322 345555432110
Q ss_pred cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCC
Q 001189 834 TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAV 911 (1128)
Q Consensus 834 Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~l 911 (1128)
.++....... .. .+ ..+. .+..+.+. +....+.+..++.++ .+|+++++|++|.-+
T Consensus 84 ---~~l~~~~~~~-~~-------~~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 84 ---GMFAMVDAFT-AG-------IG------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp ---TSEEEEECST-TT-------TC------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred ---CcEEEEecch-hh-------cc------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 0111000000 00 00 0000 00000000 112223333444444 479999999999987
Q ss_pred --CHHHHHHHHHHHHHH--cCCcEEEEeecCchh--------hhh-cCEEEEEeC
Q 001189 912 --DVRTDALIQKTIREE--FKSCTMLIIAHRLNT--------IID-CDRILLLDS 953 (1128)
Q Consensus 912 --D~~t~~~i~~~l~~~--~~~~Tvi~vtH~l~~--------~~~-~D~i~vl~~ 953 (1128)
|+...+.+...+.+. ..++|||+++|.... +.+ ||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 543333333333332 257999999998765 334 999999964
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-11 Score=141.44 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=96.0
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEecCCCChH
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPS-------DKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~G-------e~v~ivG~~GsGKSTll~~l~g~~----~p~~G~I~i~g~~i~~~~~~ 815 (1128)
++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|++.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344444543 25899999999877 899999999999999999999998 77888887776655332111
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC-CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+..|.+++|.+.++. ++.++|.+.- .. . ..... + .+...+. +.++.. .......||+|+|||
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~--~i~~~l~--~~~li~-at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---K--SIRIDIQ--PFTLVG-ATTRSGLLSSPLRSR 170 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHHHTT
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---c--cccccCC--CeEEEE-ecCCcccCCHHHHHh
Confidence 12456999999887764 6666653210 00 0 00000 0 0000111 122221 222334799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
++++ .+||+.+...+.+.|++..
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 8654 6778877888888887643
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-10 Score=120.87 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=90.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEE--------CCEecCC-CChHHhhhceEEEcCCC------cccc
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV---ELERGRILI--------DGFDIAK-FGLMDLRKILGIIPQSP------VLFS 832 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 832 (1128)
+.+++|+|++||||||+.++|.+.+ .++.|.+.. +|.++.. .....+++.+++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999876 788899887 6777652 34556788999999986 3344
Q ss_pred ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHhccCCCEEEEecccc
Q 001189 833 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~-e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs 909 (1128)
.++.+++. ++++..++..+..++.+.....+..+.+. .+|.-++|+ .++++++.+++++|+.+++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 46665543 46677777777777777665444444332 334456665 34556777888888877653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-09 Score=110.30 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCC--CChHHhhhceEEEcCCCcccc--ccHhh
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVEL-----------ERGRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFS--GTVRF 837 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~Tv~~ 837 (1128)
+++|+|+||||||||++.+.|...+ .+|+|.++|.++.- ++....++..++++|...-.. -++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57999999976531 111111222233333211000 01111
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCc-chhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gl-dt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~ 916 (1128)
+.+. .+-+.+...++. +. ...+... --.++..- .|..-..+...+|++++.+|+++++| ||++|....
T Consensus 111 ~~~~---~s~~~~~~~~~~--~~---~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLKE--LR---DHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHHH--HH---HHSCTTCEEEEEEECG-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHHH--HH---HhcCCCCcEEEEEECc-ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1110 000111111111 00 0000000 00111111 12222223478899999999999999 999999999
Q ss_pred HHHHHHHHH
Q 001189 917 ALIQKTIRE 925 (1128)
Q Consensus 917 ~~i~~~l~~ 925 (1128)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-11 Score=130.46 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|.+... .|.|.++|.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34555555642 35899999999999 99999999999999999999885 79999998876554444556667888
Q ss_pred cCCCc-ccc-ccHhhccccCCCC--C-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV-LFS-GTVRFNLDPFSEH--S-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~-lf~-~Tv~~nl~~~~~~--~-----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++. .+. -++.+|++..... . .++..+ .+..+ + ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~l-------l----~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQL-------L----VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHH-------H----HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHH-------H----HHHhCCCCCCCEEEEEe
Confidence 88764 332 2566666421110 0 111111 11111 1 13899999999999999
Q ss_pred ccCCCEEEEec
Q 001189 896 LRRSKILVLDE 906 (1128)
Q Consensus 896 l~~p~iLlLDE 906 (1128)
..+|++ ||+
T Consensus 185 t~~p~~--ld~ 193 (278)
T 1iy2_A 185 TNRPDI--LDP 193 (278)
T ss_dssp ESCTTS--SCH
T ss_pred cCCchh--CCH
Confidence 999986 454
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-08 Score=111.04 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=83.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~ 845 (1128)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++++-+|+ +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~----- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LL----- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CE-----
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eE-----
Confidence 578999999999999999999888775554444443 333211 0111 011111111111 10
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC--CCEEEEeccccCC----------CH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAV----------DV 913 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~--p~iLlLDEpTs~l----------D~ 913 (1128)
+.. ..+. .|.+.++++++++ |+++|+||+++.+ |+
T Consensus 118 ----------------------------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 118 ----------------------------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ----------------------------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ----------------------------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 000 0121 2345678888765 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHH----c-CCcEEEEeecCchh----------------hhh-cCEEEEEeCCEEEEecC
Q 001189 914 ---RTDALIQKTIREE----F-KSCTMLIIAHRLNT----------------IID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 914 ---~t~~~i~~~l~~~----~-~~~Tvi~vtH~l~~----------------~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
...+.+.+.++++ . .++|||+++|-... +.. ||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1122344444433 1 48999999996431 344 99999998877765554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-09 Score=128.62 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~ 840 (1128)
.+++++.++..+.|.|.|||||||++++|.. ++.++.|++.+.+.|.+......+.. -|+++. +|..|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999999886 66777788988888876543332221 122211 11111
Q ss_pred cCCCCCHHHHHHHHHHhc--H---HHHHHHccCCcchhhhc---CCCCCChhHHHHH----------HHHHHhccCCC-E
Q 001189 841 PFSEHSDADLWEALERAH--L---KDAIRRNSLGLDAQVSE---AGENFSVGQRQLL----------SLSRALLRRSK-I 901 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~--l---~~~i~~lp~Gldt~v~e---~g~~LSgGqrqrl----------~lArall~~p~-i 901 (1128)
.++..++|+.+. + .+.+.. .|.....+- ....+|+||+|+. ++|+++...|. +
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 111222221110 0 011111 122111100 0113678887652 45677778888 7
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH----c-CCcEEEEeecCch
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREE----F-KSCTMLIIAHRLN 940 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~----~-~~~Tvi~vtH~l~ 940 (1128)
+++||++.-+|... ..+.+.|.++ . .|.++|++|||++
T Consensus 301 lvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999888432 3344444322 2 2779999999987
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.9e-09 Score=114.67 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCceEE--------ECCEecC-CCChHHhhhceEEEcCCC------cc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRIL--------IDGFDIA-KFGLMDLRKILGIIPQSP------VL 830 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 830 (1128)
++|++++|+||+||||||++++|. |+..|++|.|. .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 456778899999999754 34
Q ss_pred ccccHhhccccCCCCCHHHHHHHHHHhcHHHHH
Q 001189 831 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863 (1128)
Q Consensus 831 f~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i 863 (1128)
+..++.+|+. ..++......+.....+
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~v 131 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRV 131 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHH
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHH
Confidence 5557777764 23454444444333333
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-09 Score=117.15 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh--------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-------- 814 (1128)
.|+++|+...|.. ++++.+ ++++|+||||||||||+++|.|++.|++|.|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 3788888655421 566666 8999999999999999999999999999999999998844332
Q ss_pred HHhhhceEEEcCC
Q 001189 815 MDLRKILGIIPQS 827 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~ 827 (1128)
...+..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246679999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.8e-08 Score=109.25 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=85.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcH
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 225 (1128)
.+|++++++|+||+||||++..|++.+.+..| .+|.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHH-----------HHTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHH-----------HHHhcC--
Confidence 47999999999999999999999999876555 36899999874 3344443321 111111
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc---cCCcEEEEE-
Q 001189 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE---LSGKTRVLV- 301 (1128)
Q Consensus 226 ~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~---~~~~tvilv- 301 (1128)
+|. .. ..+ +..-+.+|+++ .++|++|+| |+++|+.....+.+ +.... ....+++++
T Consensus 162 -----l~~----~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~ 221 (296)
T 2px0_A 162 -----APL----EV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLS 221 (296)
T ss_dssp -----CCC----CB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEE
T ss_pred -----CCe----Ee-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEE
Confidence 110 00 012 34457777764 899999999 89999865544332 22211 122334444
Q ss_pred -ccCccchhc-CCEEEEEeCCeEee
Q 001189 302 -TNQLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 302 -tH~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
||....+.. ++++..+..+.++.
T Consensus 222 at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 222 ATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888766654 56554555565554
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-10 Score=125.67 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++++.+.|.. +.+++++++++++| ++|+||||+|||||+++|.+... .|.|.++|.++........++.++.+
T Consensus 27 ~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 27 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 44555555532 35899999999999 99999999999999999999875 79999998776544444455667778
Q ss_pred cCCCc-ccc-ccHhhccccCCC--C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV-LFS-GTVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~-lf~-~Tv~~nl~~~~~--~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|+.. .+. -++.++++.... . ..++..+ .+..+. ..|||||+||..+++|+
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHH---------HHHHHH-----------HHHHTCCTTCCEEEEEE
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEEc
Confidence 87753 222 255566642110 0 0111111 111111 13789999999999999
Q ss_pred ccCCCEEEEeccc
Q 001189 896 LRRSKILVLDEAT 908 (1128)
Q Consensus 896 l~~p~iLlLDEpT 908 (1128)
..+|++ ||++.
T Consensus 161 t~~p~~--ld~~l 171 (254)
T 1ixz_A 161 TNRPDI--LDPAL 171 (254)
T ss_dssp ESCGGG--SCGGG
T ss_pred cCCchh--CCHHH
Confidence 999986 56654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-08 Score=123.39 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=102.1
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEecCCCChHHhhhceEEEcCCC---------
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDGFDIAKFGLMDLRKILGIIPQSP--------- 828 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 828 (1128)
.+++++++.+.+|+.++|+||+|+|||||+++|.+++.+.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8888888765543 34688887754
Q ss_pred -------------cccc-ccHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 829 -------------VLFS-GTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 829 -------------~lf~-~Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+.+. .++.+|+....... ...+... ......+++.. ++..- .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCce
Confidence 1121 13444442110000 0000000 00111111111 11100 111349999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~ 925 (1128)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999998875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-08 Score=121.44 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=96.3
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc--
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-- 840 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-- 840 (1128)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+..+.+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987665 67998 7899999988888899999999999888778888873
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHH
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~ 920 (1128)
++...-..++..+ +-..+.-++++| |+.++|+.++..+.
T Consensus 82 pG~~~f~~~~~~~----------------------------------------l~~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGA----------------------------------------LEAADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHH----------------------------------------HHHCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHH----------------------------------------HhhcCcEEEEEc-CCcccchhHHHHHH
Confidence 2211000111111 112355688888 99999988885554
Q ss_pred HHHHHHcCCcEEEEeecCchhh
Q 001189 921 KTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 921 ~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
.+. + .+.++|++.|.++..
T Consensus 121 ~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH-H--TTCCEEEEEECGGGC
T ss_pred HHH-H--ccCCEEEEecCCchh
Confidence 443 2 467788888887753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-10 Score=127.73 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=82.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeec-------------CcEEEEecCC-CCC-cccH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTVAYVPQVS-WIF-NATV 200 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i~~v~Q~~-~l~-~~Tv 200 (1128)
.+++++++.+++| ++|+||||||||||+++|+|+..+. ...+. ..+++++|.+ ... .-++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLN---FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCE---EEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 4789999999999 9999999999999999999988651 11111 1245555543 221 2344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC------
Q 001189 201 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS------ 274 (1128)
Q Consensus 201 ~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts------ 274 (1128)
.|||.......... . .....+. +......|||||+||+.+++|+..+|++| |+|+.
T Consensus 109 ~Deid~~~~~r~~~--~---~~~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 109 FDEVDALCPRRSDR--E---TGASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp EETCTTTCC--------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred eehhhhhhcccCCC--c---chHHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 44443321100000 0 0000011 11112369999999999999999999975 99874
Q ss_pred ------CcCHHHHHHHHHHHH
Q 001189 275 ------ALDAHVGRQVFDRCI 289 (1128)
Q Consensus 275 ------~LD~~~~~~i~~~~~ 289 (1128)
.-|.+.+..|++.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 237888888887654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.9e-08 Score=109.48 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=68.4
Q ss_pred eeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHH
Q 001189 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 220 (1128)
Q Consensus 141 isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~ 220 (1128)
+++..++|++++|+|+|||||||++..|++.+.+..+ +|.++..+++ .....++ +....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-------kV~lv~~D~~--r~~a~eq-----------L~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-------SVVLAAADTF--RAAAIEQ-----------LKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECTT--CHHHHHH-----------HHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-------EEEEEccccc--cHHHHHH-----------HHHHHH
Confidence 4556778999999999999999999999999876532 3556665532 2111121 111122
Q ss_pred HhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEeCcCC
Q 001189 221 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV---SMARAVYSNSDVFIFDDPLS 274 (1128)
Q Consensus 221 ~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi---aLARal~~~~~illLDEpts 274 (1128)
..++ + .+ ..+|||+.|++ +|++++..++|++|+|+|..
T Consensus 157 ~~gl-------~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGA-------T-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTC-------E-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCC-------c-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1111 1 11 24689999999 99999999999999999974
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.9e-10 Score=128.87 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=96.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcC------------CCCCCCCceeecC-----------------cEEEEecCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGE------------LPPVSDASAVIRG-----------------TVAYVPQVSW 194 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~------------~~~~~g~~~~~~~-----------------~i~~v~Q~~~ 194 (1128)
.+++|..++|+|+||+|||||+++|+|. ..|+.|.. .+.+ ...++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v-~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV-AVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE-EECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee-eeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 5578999999999999999999999993 23443322 1221 1245666665
Q ss_pred CCc-ccHHHHHhcCCCCCHHHHHHHHHHhC-cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEe
Q 001189 195 IFN-ATVRDNILFGSAFEPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS--DVFIFD 270 (1128)
Q Consensus 195 l~~-~Tv~eni~~g~~~~~~~~~~~~~~~~-l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~--~illLD 270 (1128)
+.. .|..|++ . ..+...++.+. +...++... ......+||+. +| ++.++|
T Consensus 95 l~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhch
Confidence 542 2322221 1 12222222221 111112111 11223456653 88 999999
Q ss_pred CcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhc-CCEEE-EEeCC-eEeeecCh
Q 001189 271 DPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRII-LVHEG-MVKEEGTF 328 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G-~i~~~g~~ 328 (1128)
||++.+|+...+..++.+... ...|+|+ ++|....+.. ||++. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888765544 4446664 3998877654 79998 89999 88766654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=109.65 Aligned_cols=177 Identities=11% Similarity=0.123 Sum_probs=107.3
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHhhhce-EEEcCCCccccccHh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKIL-GIIPQSPVLFSGTVR 836 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~Tv~ 836 (1128)
+.|+++...+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++++++ +....-+. ..++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~---~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINA---QNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCH---HHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCH---HHHh
Confidence 478888888999999999999999999999999988776555 56555432 3445554432 11000000 0111
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCH-
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDV- 913 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~- 913 (1128)
. +..++++.....+. .+.+...| -.+.+ ...+|.+|.+ ..+|.+. .+|+++++|+++.-.+.
T Consensus 265 ~-----g~l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp T-----SCCCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred c-----CCCCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 1 12234443322221 11122222 11222 2368999876 5667766 57999999999987743
Q ss_pred -------HHHHHHHHHHHHHc--CCcEEEEeec---------C--ch--------hhhh-cCEEEEEeCCEE
Q 001189 914 -------RTDALIQKTIREEF--KSCTMLIIAH---------R--LN--------TIID-CDRILLLDSGRV 956 (1128)
Q Consensus 914 -------~t~~~i~~~l~~~~--~~~Tvi~vtH---------~--l~--------~~~~-~D~i~vl~~G~i 956 (1128)
.....+.+.|+.+. .+++||+++| + +. .+.. ||.|+.|..++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22244555565543 3799999999 2 32 3444 999999987654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-07 Score=100.78 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=83.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCccc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~T 199 (1128)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|+|.+.+..+ +|.++..++.- +.+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-------~v~l~~~d~~~-~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAADTQR-PAA 141 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEECCSSC-HHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCccc-HhH
Confidence 4556677777521 2 678888 9999999999999999999999999876533 35566555431 111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc-CCCcCH
Q 001189 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP-LSALDA 278 (1128)
Q Consensus 200 v~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp-ts~LD~ 278 (1128)
+ + .+....+..+ +..++.+ ..-.-.+-+|.+|+++...++|++|+|+| ++++|.
T Consensus 142 ~-~-----------ql~~~~~~~~----l~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 142 R-E-----------QLRLLGEKVG----VPVLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp H-H-----------HHHHHHHHHT----CCEEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred H-H-----------HHHHhcccCC----eEEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 1 1 1111111111 1112211 11233456789999998899999999999 999998
Q ss_pred HHHHHHHH
Q 001189 279 HVGRQVFD 286 (1128)
Q Consensus 279 ~~~~~i~~ 286 (1128)
.....+..
T Consensus 197 ~~~~~l~~ 204 (295)
T 1ls1_A 197 PLMGELAR 204 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-07 Score=98.47 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~ 925 (1128)
...|++++.+|+++++| ||++|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888887765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-08 Score=109.22 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCcEEEEecCCCCC-----cccHHHH
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGTVAYVPQVSWIF-----NATVRDN 203 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~i~~v~Q~~~l~-----~~Tv~en 203 (1128)
+++.+|++++|+|+||+|||||+|+|+|...|..|.+.. .+..++|++|.|-+. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567899999999999999999999999999887664331 111269999999764 3578 89
Q ss_pred Hh
Q 001189 204 IL 205 (1128)
Q Consensus 204 i~ 205 (1128)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-07 Score=97.37 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=87.5
Q ss_pred Cceeee-eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh-cCCCCCHH
Q 001189 136 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPA 213 (1128)
Q Consensus 136 ~~L~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~ 213 (1128)
+.|+.+ .-.+++|++++|+|+||||||||+..++....+. | +.+.|+.-+.. ...+.+.+. +|... +
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~------~~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-G------EPGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-T------CCEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-C------CeEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 467776 6689999999999999999999966554433222 1 24666665431 122333332 22221 1
Q ss_pred HHHHHHHHhCcH--H----HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCcCCCc--CHHHHHH
Q 001189 214 RYEKAIDVTSLQ--H----DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSAL--DAHVGRQ 283 (1128)
Q Consensus 214 ~~~~~~~~~~l~--~----~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~--~~~~illLDEpts~L--D~~~~~~ 283 (1128)
.+. ..-.+. + .+...+.... .+-+. +....+....++.++ .+|+++++|+|++.+ |+...+.
T Consensus 79 ~~~---~~~~l~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 79 PYE---EKGMFAMVDAFTAGIGKSKEYEK-YIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp HHH---HHTSEEEEECSTTTTCC--CCCS-CBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HHh---hCCcEEEEecchhhccccccccc-ccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 111 000110 0 0000000000 00011 112333333344443 579999999999988 5543444
Q ss_pred HHHHHHcc-ccCCcEEEEEccCccc---------hhcCCEEEEEeC
Q 001189 284 VFDRCIRG-ELSGKTRVLVTNQLHF---------LSQVDRIILVHE 319 (1128)
Q Consensus 284 i~~~~~~~-~~~~~tvilvtH~~~~---------l~~~d~i~~l~~ 319 (1128)
.+..+.+. ...|.|+|+++|.... ...||.|+.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 44444443 2358899999998654 234799999964
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.6e-09 Score=117.72 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=50.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEe-------------------eCCCEEEEEcCCCccHHHHHHHHhcCCC--CCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDI-------------------PVGSLVAIVGGTGEGKTSLISAMLGELP--PVSD 177 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i-------------------~~G~~~~ivG~~GsGKSTLl~~l~G~~~--~~~g 177 (1128)
.|+++|+++.|. ++++++++.+ ++|++++|+|+||||||||+++|.|++. |++|
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 588999999993 6999999988 9999999999999999999999999987 8766
Q ss_pred Cc
Q 001189 178 AS 179 (1128)
Q Consensus 178 ~~ 179 (1128)
.+
T Consensus 112 ~i 113 (308)
T 1sq5_A 112 RV 113 (308)
T ss_dssp CE
T ss_pred eE
Confidence 54
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.3e-09 Score=119.33 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=86.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.+++++++.+++|+.++|+||+|||||||+++|.|. .+|.+..-+ . +...++..++++||.+.++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999986 367775511 1 1122333578889987643 223
Q ss_pred cccCCC----C-CHHHHHHHHHHhcHHHHHHH---------ccCCcc-----hhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 839 LDPFSE----H-SDADLWEALERAHLKDAIRR---------NSLGLD-----AQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 839 l~~~~~----~-~~~~i~~~l~~~~l~~~i~~---------lp~Gld-----t~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++.... . ....+. ....+.+.+.. .|..++ -.+......+++|.+||+..+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 0 000110 11122233220 000011 1233445668999999999988889999
Q ss_pred CEEE-Eecccc
Q 001189 900 KILV-LDEATA 909 (1128)
Q Consensus 900 ~iLl-LDEpTs 909 (1128)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-07 Score=106.18 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=62.8
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------e-cCcEEEEecCCC-------------
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I-RGTVAYVPQVSW------------- 194 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~-~~~i~~v~Q~~~------------- 194 (1128)
|++.+|++++|+||||||||||+++|+|+.+|++|.+.. . ...++|++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999998765432 1 125899999985
Q ss_pred ---CC-cccHHHHHhcCCC----CCHHHHHHHHHHhCcH-HHHhcCC
Q 001189 195 ---IF-NATVRDNILFGSA----FEPARYEKAIDVTSLQ-HDLDLLP 232 (1128)
Q Consensus 195 ---l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~-~~~~~l~ 232 (1128)
+| ..|+ +|+.|+.- -...++.++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 23 5588 99988521 1234677888888884 4455444
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-07 Score=107.73 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=40.5
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~ 179 (1128)
.+|+++||++++ ++++|+||||||||||+++|+|+++|++|.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 489999999999 9999999999999999999999999988754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.1e-09 Score=118.29 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=58.9
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCC-------CEEEEEcCCCccHHHHHHHHhcCC----CCCCCCce-----------
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVG-------SLVAIVGGTGEGKTSLISAMLGEL----PPVSDASA----------- 180 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G-------~~~~ivG~~GsGKSTLl~~l~G~~----~~~~g~~~----------- 180 (1128)
++++..|. .+.+++++++.+++| +.++|+||||+|||||+++|+|++ .+.+|...
T Consensus 22 ~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 34444453 235899999999876 899999999999999999999987 45444322
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHh
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNIL 205 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~ 205 (1128)
..+..|.+++|.+.+.. ++.|++.
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHH
Confidence 12356999999877664 7877774
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-08 Score=121.67 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=90.4
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee--------cCcEEEEecCC-------------
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQVS------------- 193 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q~~------------- 193 (1128)
..+++++++.+.+|+.++|+||+|+|||||+++|+|.+++..++...+ ...++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 458899999999999999999999999999999999998866443332 33477887643
Q ss_pred ---------CCC-cccHHHHHhcCCCCCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 001189 194 ---------WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 262 (1128)
Q Consensus 194 ---------~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~ 262 (1128)
|.+ ..++.+|+..++.... ..+... ........+..... -......+|+|++|++..++....
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHHT
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEe-----chhhcCCccccccccccCceeeec
Confidence 222 2233334332211000 000000 00001111111100 011224599999999999999999
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
++.+|+|||.-. |++.....+.+.+
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHH
Confidence 999999999988 8998877777644
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=105.86 Aligned_cols=168 Identities=10% Similarity=0.053 Sum_probs=101.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh---cCC----
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---FGS---- 208 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---~g~---- 208 (1128)
+.|+++...+++|+++.|.|++|+|||||+..+++...+..| ..|.|++-+-. ...+.+.+. ++-
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 468888888999999999999999999999999887644222 24667665421 112222211 111
Q ss_pred ----CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCcCCCcCH----
Q 001189 209 ----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSALDA---- 278 (1128)
Q Consensus 209 ----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~--~~~~illLDEpts~LD~---- 278 (1128)
..+++.+.++.++.+ .+...+ -.+.+ ...+|++|.+ +.+|.+. .+|+++++|+++...+.
T Consensus 263 l~~g~l~~~~~~~~~~a~~---~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 263 LRTGKLTPEDWGKLTMAMG---SLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HHTSCCCHHHHHHHHHHHH---HHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred HhcCCCCHHHHHHHHHHHH---HHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 133333333332221 122111 01212 2478999986 5667666 57999999999998743
Q ss_pred ----HHHHHHHHHHHccc-cCCcEEEEEcc---------C--cc--------chh-cCCEEEEEeCCe
Q 001189 279 ----HVGRQVFDRCIRGE-LSGKTRVLVTN---------Q--LH--------FLS-QVDRIILVHEGM 321 (1128)
Q Consensus 279 ----~~~~~i~~~~~~~~-~~~~tvilvtH---------~--~~--------~l~-~~d~i~~l~~G~ 321 (1128)
.....+...+.... ..+.++|+++| + +. .+. .||.|+.|..+.
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 22234444433322 23789999999 2 32 233 489999998765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-08 Score=101.93 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=43.3
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--CCce------eecCcEEEEecCCCCC-cccHHHHHh
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASA------VIRGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~--g~~~------~~~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
|+++++|++++|+||||||||||+++|+|+++... +... ..+..++|++|++..| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999874211 0000 0123588999988766 446666654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-07 Score=100.06 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=23.3
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHh-cCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPP 174 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~-G~~~~ 174 (1128)
....+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99843
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-07 Score=96.63 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=64.1
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHhhhceEEEcCCCcccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 832 (1128)
+...+|+.++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 77887 799988888888888865 68888998
Q ss_pred ccHhhccccCCCCCHHHHHHHHH
Q 001189 833 GTVRFNLDPFSEHSDADLWEALE 855 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~~~~~i~~~l~ 855 (1128)
+++..|+ |+ ...+.+.++++
T Consensus 89 ~~~~~n~--YG-t~~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGNM--FG-TKFETVHQIHK 108 (197)
T ss_dssp EEETTEE--EE-EEHHHHHHHHH
T ss_pred hhhhcee--cc-cchhhHHHHHh
Confidence 9999985 22 12344555444
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-07 Score=95.84 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=44.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEE----------CCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILI----------DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
.+|++++|+||||||||||+++|.+.+++ ..|.|.. +|.+....+...+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998864 4455533 4444444444444442 34555555555555
Q ss_pred c
Q 001189 838 N 838 (1128)
Q Consensus 838 n 838 (1128)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-06 Score=102.81 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=75.3
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
..++++++.+++| +.|+||+|+|||||++++.+.... | ++..+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3566777777777 889999999999999999984310 0 000111111
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc----------
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---------- 908 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpT---------- 908 (1128)
+..+ +| .|++++|-.+++|....|.||+|||+.
T Consensus 86 ~~~~-------------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VELF-------------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTCC-------------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHHH-------------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1100 01 267888889999999999999999994
Q ss_pred cCCCHHHHHHHHHHHHHH-----cCCcEEEEeecCchhh
Q 001189 909 AAVDVRTDALIQKTIREE-----FKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 909 s~lD~~t~~~i~~~l~~~-----~~~~Tvi~vtH~l~~~ 942 (1128)
++.|.+..+.+.+.+... ..+..||.+||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 366766666666666543 1356899999998665
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=96.18 Aligned_cols=144 Identities=18% Similarity=0.308 Sum_probs=83.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 223 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 223 (1128)
.+++|+++.|.|++|||||||+..++...... | +.+.|+.-+..+ ++. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g------~~vlyi~~E~~~---------------~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-G------GIAAFIDAEHAL---------------DPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T------CCEEEEESSCCC---------------CHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-C------CeEEEEECCCCc---------------CHH-H---HHHcC
Confidence 68899999999999999999988887655332 1 346777665321 111 0 11122
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCcCCCc----------CH---HHHHHH---H
Q 001189 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN--SDVFIFDDPLSAL----------DA---HVGRQV---F 285 (1128)
Q Consensus 224 l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~--~~illLDEpts~L----------D~---~~~~~i---~ 285 (1128)
.. .+.+ .+-. ..++. |-+.+++++..+ |+++++|+|++.+ |+ ...+.+ +
T Consensus 111 ~~--~~~l------~i~~---~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 111 VD--TDSL------LVSQ---PDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp CC--GGGC------EEEC---CSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred CC--HHHe------EEec---CCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 11 0110 0100 11333 345678888755 9999999999998 32 111122 2
Q ss_pred HHHHcc-ccCCcEEEEEccCccc----------------hh-cCCEEEEEeCCeEeeec
Q 001189 286 DRCIRG-ELSGKTRVLVTNQLHF----------------LS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 286 ~~~~~~-~~~~~tvilvtH~~~~----------------l~-~~d~i~~l~~G~i~~~g 326 (1128)
..+... ...+.|+|+++|-..- +. .||.++.++.+++...|
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 222211 2348899999996541 33 36888888777655444
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-07 Score=92.28 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=34.0
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++++.+| +++|+|+||||||||+++|.+.+.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999998766543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-08 Score=103.96 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC---CCCCCCcee---------------------ecCcEEEEecCC------CCCc
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGEL---PPVSDASAV---------------------IRGTVAYVPQVS------WIFN 197 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~---~~~~g~~~~---------------------~~~~i~~v~Q~~------~l~~ 197 (1128)
+.+++|+|++||||||++++|++.+ .++.|.... ++..+++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999866 344332211 223467787765 3355
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccc-cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI-GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~v-g~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
.++.+++. .+++..++..+...+.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67777763 3455566666666655543322222222 2346667776 4566778889998887764
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-07 Score=96.24 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=42.8
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 829 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 829 (1128)
.++.++|++++|+|+|||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 3566889999999999999999999999987 8999998776431 1112234677777643
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=6.5e-07 Score=106.56 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=79.9
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCCcee--ecCc-EEE--EecCCCCCcccHHHHHhcCCCCCH
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAV--IRGT-VAY--VPQVSWIFNATVRDNILFGSAFEP 212 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g~~~~--~~~~-i~~--v~Q~~~l~~~Tv~eni~~g~~~~~ 212 (1128)
-+++++.++..+.|.|.+||||||+++.|.. .+.+..+.... +..+ +.+ ...-|++.. +|. .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vv--------td~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVV--------TDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCB--------CSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eee--------cCH
Confidence 4788899999999999999999999999876 33333332211 1100 000 000112110 111 112
Q ss_pred HHHHHHHHHhC--cH---HHHhcCCCCCcccccC---CCCCCChHHHHHH----------HHHHHHccCCC-EEEEeCcC
Q 001189 213 ARYEKAIDVTS--LQ---HDLDLLPGGDVTEIGE---RGVNISGGQKQRV----------SMARAVYSNSD-VFIFDDPL 273 (1128)
Q Consensus 213 ~~~~~~~~~~~--l~---~~~~~l~~g~~t~vg~---~g~~LSGGQkqRi----------aLARal~~~~~-illLDEpt 273 (1128)
++..++++++. +. +.+... |....-+. ....+||||+||. ++|+++...|. ++++||++
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 22222222110 00 111111 10000000 0124788887752 35677788898 78899999
Q ss_pred CCcCHHH--HHHHHHHHHcc-ccCCcEEEEEccCcc
Q 001189 274 SALDAHV--GRQVFDRCIRG-ELSGKTRVLVTNQLH 306 (1128)
Q Consensus 274 s~LD~~~--~~~i~~~~~~~-~~~~~tvilvtH~~~ 306 (1128)
+.+|... ...++..+.+. ...|.++|++||++.
T Consensus 308 ~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 308 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9887432 22223333222 234889999999987
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.5e-07 Score=93.54 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=45.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEecC
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI--LIDGFDIA 810 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I--~i~g~~i~ 810 (1128)
.+.+..++..++|++++|+|||||||||++++|.+.+. ..|.+ .+||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 57788888899999999999999999999999999987 78988 88876553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-06 Score=100.50 Aligned_cols=143 Identities=23% Similarity=0.224 Sum_probs=81.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----------CCCceEEECCEecCCCChHHhhhceEEEcCCCcc----ccccHhh
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE-----------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL----FSGTVRF 837 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~Tv~~ 837 (1128)
+++|+|++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 399999999999999999999865 67799999997652 22345666654421 2222221
Q ss_pred -----cccc-CC-CCCHHHHHHHHHHhcHHHHHHHcc-CCc-chhhhcCCCCCChhHHHHHHHH----HHh-ccCCCEEE
Q 001189 838 -----NLDP-FS-EHSDADLWEALERAHLKDAIRRNS-LGL-DAQVSEAGENFSVGQRQLLSLS----RAL-LRRSKILV 903 (1128)
Q Consensus 838 -----nl~~-~~-~~~~~~i~~~l~~~~l~~~i~~lp-~Gl-dt~v~e~g~~LSgGqrqrl~lA----ral-l~~p~iLl 903 (1128)
.+.+ ++ ...+.+..+.++. ..+.+..+. .+. --.+......+|+|++|++.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1111 11 1111111111111 122222221 111 1122344455788888888877 665 444454
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
+|||++|......+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999888888887643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-07 Score=100.36 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=35.9
Q ss_pred cEEEEEE-EEEeCCCCCCceeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 743 SIKFEDV-VLRYRPELPPVLHGLSFTIPP---SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 743 ~i~~~~v-~~~y~~~~~~~l~~vsl~i~~---Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.++++|+ +++|.. ..++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999865
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-06 Score=92.55 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.0
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 830 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 830 (1128)
++|++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 222 22222111 1112346777776543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-06 Score=98.08 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=73.8
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
.++++++.+++| +.|+||+|+|||||+++++++... .+-++.- .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~f~~is~---------~~~------------- 85 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------PFFHISG---------SDF------------- 85 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------CEEEEEG---------GGT-------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------CeeeCCH---------HHH-------------
Confidence 566777778888 889999999999999999996521 1111110 000
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC----------CCcCHHHHHHHHH
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL----------SALDAHVGRQVFD 286 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt----------s~LD~~~~~~i~~ 286 (1128)
...+ +| .|++++|-.+++|....|.|+++||+- ++.|.+..+.+.+
T Consensus 86 -----------~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 86 -----------VELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp -----------TTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred -----------HHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 0000 11 278899999999999999999999994 3566654444433
Q ss_pred HHHcc-----ccCCcEEEEEccCccchh
Q 001189 287 RCIRG-----ELSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 287 ~~~~~-----~~~~~tvilvtH~~~~l~ 309 (1128)
++.. ...+..+|.+||+++.++
T Consensus 142 -LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 -LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp -HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred -HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 3321 124678899999987654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-07 Score=112.97 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=93.3
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
++++...|.. +.+++++++.+++| +.|+||+|+|||||+++|.+... .|.|.++|.++........++++..++
T Consensus 43 l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 43 LKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 4444444432 35789999999999 99999999999999999999875 789999998876654445556677788
Q ss_pred CCCc-cccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 826 QSPV-LFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 826 Q~~~-lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|... .... .+-++++..... ..++..+.+ ..++. .||||++|+..+++|..
T Consensus 117 q~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 117 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp TTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECC
T ss_pred HHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEec
Confidence 8764 2222 455666533211 112222221 11221 27888999999999999
Q ss_pred cCCCEEEEecccc
Q 001189 897 RRSKILVLDEATA 909 (1128)
Q Consensus 897 ~~p~iLlLDEpTs 909 (1128)
++|++ ||||.-
T Consensus 177 n~p~~--LD~aLl 187 (499)
T 2dhr_A 177 NRPDI--LDPALL 187 (499)
T ss_dssp SCGGG--SCTTTS
T ss_pred CChhh--cCcccc
Confidence 99987 898875
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.06 E-value=8.5e-07 Score=100.13 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHh-----hhceEEE-cCC
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL-----RKILGII-PQS 827 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~ 827 (1128)
++++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999888765331 223 4567888 554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=92.70 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.3
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 833 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 833 (1128)
=++++|++++|+|++||||||+.+.|.+.++ .+.+++||+.++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3578899999999999999999999999864 37889999988865
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-07 Score=98.82 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcEEEEeE-EEEeCCCCCCCceeeeeEEeeC---CCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 118 PAISIRNG-YFSWDSKAERPTLLNINLDIPV---GSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 118 ~~i~~~~~-~f~~~~~~~~~~L~~isl~i~~---G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.++++|+ +|+|. +++++|+++||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99993 235799999999999 9999999999999999999999865
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-06 Score=89.68 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh---hhcCEEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI---IDCDRILLLD 952 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~---~~~D~i~vl~ 952 (1128)
.+.|+.+|..+++.+..+|+.+-.+ ++.++|...+.+.+.+... .+.++|+.+|.+.+. ..||++++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4678999999999998888654333 4456777777777766543 356888888987764 3499998885
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.1e-06 Score=94.90 Aligned_cols=40 Identities=33% Similarity=0.582 Sum_probs=30.7
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSD 177 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g 177 (1128)
..+|++++++++ .++|+|++|||||||++.|+| ++++..|
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 358999999999 999999999999999999999 4555444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.4e-06 Score=103.91 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=53.6
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHHHHHcCC-cEEEE-eecCchhhhh-cC
Q 001189 880 NFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKS-CTMLI-IAHRLNTIID-CD 946 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l~~~~~~-~Tvi~-vtH~l~~~~~-~D 946 (1128)
-+|.|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....++ +++++ .||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 378999999999999999999999999997 99988776666666665554 56665 5898877665 44
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.3e-06 Score=93.02 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=43.7
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHhhhceEEEcCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSP 828 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 828 (1128)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++..... ....+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 478999999999999999999999999888777765 666543221 22345566665543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-06 Score=89.28 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred ce--eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE--ecCCCChH----HhhhceEEEcCCCc
Q 001189 760 VL--HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF--DIAKFGLM----DLRKILGIIPQSPV 829 (1128)
Q Consensus 760 ~l--~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~--~i~~~~~~----~~r~~i~~v~Q~~~ 829 (1128)
.+ +++++++.+| +++|+||||||||||+.+|.+++.+..|.....+. ++-..+.. ..+..|.+++|+|.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 45 7889999999 99999999999999999999998887765433221 11111100 13456888988863
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.6e-06 Score=103.78 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
.+..|+.+.|+||+||||||++.++++...+..+. ...+.++ | |. .....+.+ ++.+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~----g~~ilvl-~-P~r~La~q~~~--------------~l~~~~ 164 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE----NTQVACT-Q-PRRVAAMSVAQ--------------RVAEEM 164 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG----TCEEEEE-E-SCHHHHHHHHH--------------HHHHHT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC----CceEEec-C-chHHHHHHHHH--------------HHHHHh
Confidence 35678999999999999999999887765443220 0113222 2 11 00001111 111111
Q ss_pred CcH--HHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHHccccCCcEE
Q 001189 223 SLQ--HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTR 298 (1128)
Q Consensus 223 ~l~--~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~~~~~~~~tv 298 (1128)
+.. ..+.. ........-+.+..-+|+|+.+|..++++++.+++++|+|||.. +||......++..+.......+++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 100 00000 00000000112234589999999999999999999999999997 899876666666554333345677
Q ss_pred EE-EccCccchh
Q 001189 299 VL-VTNQLHFLS 309 (1128)
Q Consensus 299 il-vtH~~~~l~ 309 (1128)
++ +||+.+.+.
T Consensus 245 l~SAT~~~~~l~ 256 (773)
T 2xau_A 245 IMSATLDAEKFQ 256 (773)
T ss_dssp EEESCSCCHHHH
T ss_pred EEeccccHHHHH
Confidence 77 589876554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-06 Score=88.22 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=24.9
Q ss_pred EeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 128 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 128 ~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|++++..+.++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999865
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.4e-06 Score=84.66 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+++.+||+++.+|+++++| ||++|....+.+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999987643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.6e-05 Score=89.48 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEe-ccccCCCHHHHHHHHHHHHHHcCCcEEEEee--cCch
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLD-EATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLN 940 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLD-EpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt--H~l~ 940 (1128)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 358999998876 55555667788999 9999999998888888777765577888888 7754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.1e-07 Score=95.08 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=39.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~ 179 (1128)
.++++|+...+. . +|++.+ ++++|+||||||||||+++|+|.+.|++|.+
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 367777755442 1 566666 8999999999999999999999999987743
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=90.61 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888888766654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=89.99 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCE
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGF 807 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p~~G~I~i~g~ 807 (1128)
.+|++++++++ .|+|||++|||||||++.|.| ++++.+|.+...+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 58999999998 999999999999999999999 66777777654443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.1e-07 Score=97.00 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=46.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCCce---------------------eecCcEEEEecC------CCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAML---GELPPVSDASA---------------------VIRGTVAYVPQV------SWI 195 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~---G~~~~~~g~~~---------------------~~~~~i~~v~Q~------~~l 195 (1128)
++|++++|+|||||||||++++|+ |+..+++|... .++..+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 98877665432 122357888864 345
Q ss_pred CcccHHHHHh
Q 001189 196 FNATVRDNIL 205 (1128)
Q Consensus 196 ~~~Tv~eni~ 205 (1128)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6778888865
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2e-06 Score=92.46 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=45.6
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC------ChHH----hhhceEEEcCCCccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------GLMD----LRKILGIIPQSPVLF 831 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf 831 (1128)
.+.++|++++|+|+|||||||++++|.+. .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 34578999999999999999999999998 78899998775421 1111 134566777766544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.4e-06 Score=87.61 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=27.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
++|+.++|+||||||||||++.|.+.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.6e-05 Score=87.48 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
.-.++++|++|+|||||++.|+|......+... ...-.++.++++..- ..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------------------~~--- 217 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--------------------------YQ--- 217 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--------------------------EE---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--------------------------EE---
Confidence 348999999999999999999987521111000 001123333332100 00
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe-CcCCCcCHHHHHHHHHHHHccccCCcEEEEEc
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD-DPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 302 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD-Epts~LD~~~~~~i~~~~~~~~~~~~tvilvt 302 (1128)
+-..|+..+ .....+|+|++|++. +.+...++-++++| ++.+++|......++..+.... .++.+|+|.
T Consensus 218 -l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~ 287 (357)
T 2e87_A 218 -IIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVI 287 (357)
T ss_dssp -EEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred -EEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 001122111 123468999999887 55555677788999 9999999988777776554322 267788888
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.9e-07 Score=100.56 Aligned_cols=126 Identities=12% Similarity=0.154 Sum_probs=72.7
Q ss_pred CceeeeeEEeeCCC------EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh----
Q 001189 136 PTLLNINLDIPVGS------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---- 205 (1128)
Q Consensus 136 ~~L~~isl~i~~G~------~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---- 205 (1128)
..|++++..+.+++ +++|+|+||||||||+++|.+++.+..+ .+.+++++++.+.......+...
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~-----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD-----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 35556666665555 8999999999999999999998864211 23589999998776554444321
Q ss_pred cCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 206 FGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 206 ~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
+|. .++.+.+.+.++. +..|..+ +.- -..|-+..+|+.-+......|+|+|+|-+..-.|.
T Consensus 149 ~g~P~~~D~~~l~~~L~~---------L~~g~~~-v~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNA---------IKSGQRN-VRI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTSGGGBCHHHHHHHHHH---------HHTTCSS-EEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCcccccHHHHHHHHHh---------hhccccc-ccc--chhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 232 2344444443322 2122200 000 01222222333222344568999999998875554
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.70 E-value=4e-05 Score=89.41 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceEEEcCCCccccccHhhccc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~Tv~~nl~ 840 (1128)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. .-+.|++
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999888876533221 2110 0012333
Q ss_pred cCC---CCCHHHHHHHHHHhcHHHHHHHc-cCCcchhhhcCCCCCC---hhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 841 PFS---EHSDADLWEALERAHLKDAIRRN-SLGLDAQVSEAGENFS---VGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 841 ~~~---~~~~~~i~~~l~~~~l~~~i~~l-p~Gldt~v~e~g~~LS---gGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
.+. ..+..++. .+.++.+ ..++|..+-+.+..++ ....+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 221 11223331 1222222 2466665544333343 23566677788776555677788 5666554
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeec
Q 001189 914 RTDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 914 ~t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
... + +.+.+. -+.+-+++|+
T Consensus 227 v~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHH--H-HHHHHH-TCCCEEEEES
T ss_pred HHH--H-HHHHhc-CCceEEEEeC
Confidence 422 2 222221 2345666665
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=3.3e-05 Score=81.15 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccc---hhcCCEEEEEeC
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF---LSQVDRIILVHE 319 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~---l~~~d~i~~l~~ 319 (1128)
.++|+.+|..+++.++.+|+.+.++ .+.++|...+.+.+.+.. ..+.++|+.+|.+.. .+.||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~--~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT--CCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh--cCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4688999999999998887644332 445677766666553322 135688888887654 356899999864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=83.12 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.++++||||++++|++++|+|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999776
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.2e-05 Score=85.78 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.|.+ ++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~-------------------fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV-------------------FSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE-------------------EES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE-------------------EeC------------
Confidence 4577776679999999999999999999998887654332233322 110
Q ss_pred cccCCCCCHHHHHHHH----HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 001189 839 LDPFSEHSDADLWEAL----ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l----~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~ 914 (1128)
+.+.+++..-+ ....+... . . | .||.++.+|+..|...+.+++++|.|+|+..+|
T Consensus 83 -----Ems~~ql~~Rlls~~~~v~~~~l-----------~-~-g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 83 -----EMSAEQLALRALSDLTSINMHDL-----------E-S-G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp -----SSCHHHHHHHHHHHHHCCCHHHH-----------H-H-T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred -----CCCHHHHHHHHHHHhhCCCHHHH-----------h-c-C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 11222322211 11111111 1 1 2 699999999999999999999999999875533
Q ss_pred HHHHHHHHHHHHcCCcEEEEeec
Q 001189 915 TDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 915 t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
.-+...+.+.+...+..+|+|=|
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEec
Confidence 22222222222222566766643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-05 Score=82.95 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=29.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++|++++|+|+|||||||++++|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866433
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.5e-05 Score=83.71 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=39.7
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 813 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 813 (1128)
.++|++++|+|++||||||+++.|.+.+.+..|.|.+.+.|....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5679999999999999999999999999988999988776654443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.9e-05 Score=89.35 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=79.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+-|+.+.-.+++|+++.|.|++|+|||||+.-++..... .| ..|.|++=+ .+.+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g------~~Vl~fSlE-----------------ms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD------RGVAVFSLE-----------------MSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT------CEEEEEESS-----------------SCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEeCC-----------------CCHHHH
Confidence 457776668999999999999999999999888765422 11 246665432 222222
Q ss_pred H-HHH-HHhCc--HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcc
Q 001189 216 E-KAI-DVTSL--QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291 (1128)
Q Consensus 216 ~-~~~-~~~~l--~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~ 291 (1128)
. +.+ ..+++ ..... ..||+++++|++.|...+.++++++.|+|...+| ..+.....+..
T Consensus 90 ~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--~i~~~ir~l~~- 152 (338)
T 4a1f_A 90 ALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--QIRLQLRKLKS- 152 (338)
T ss_dssp HHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--HHHHHHHHHHH-
T ss_pred HHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--HHHHHHHHHHH-
Confidence 2 111 11222 11111 2699999999999999999999999999875544 22222222221
Q ss_pred ccC-CcEEEEEcc
Q 001189 292 ELS-GKTRVLVTN 303 (1128)
Q Consensus 292 ~~~-~~tvilvtH 303 (1128)
.. |..+|+|-|
T Consensus 153 -~~gg~~lIVIDy 164 (338)
T 4a1f_A 153 -QHKELGIAFIDY 164 (338)
T ss_dssp -HCTTEEEEEEEE
T ss_pred -hcCCCCEEEEec
Confidence 12 567777754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.4e-05 Score=81.13 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 206 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~ 206 (1128)
++++|.+++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------CcEEEeCCccccCH---hHhhc
Confidence 677899999999999999999999999874 38899999988765 45544
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.58 E-value=9.7e-06 Score=91.95 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=49.7
Q ss_pred CccEEEEEEEEEeCCCCCCcee--------------eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLH--------------GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~--------------~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+.+.|+||++.|+.. +..|+ |+.+.|.+|++++|+|++|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4679999999999754 46888 8999999999999999999999999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.8e-05 Score=86.10 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
-+++|+.+.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.9e-06 Score=101.25 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEE-ECCEec
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RIL-IDGFDI 809 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~-i~g~~i 809 (1128)
.+++|++++|+|+||||||||+++|.+.+.|++| +|. +||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 784 888554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=84.43 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=34.0
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc----CCcEEEEeecCchhh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTI 942 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~----~~~Tvi~vtH~l~~~ 942 (1128)
.+|.||+|||+... |......+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 8877777777775432 367899999988543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=75.42 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
...||+++.+|++.++| ||++|+...+.+++.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999999887654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=6.2e-05 Score=88.84 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred cCCCEEEEeccccCCCH-HHHHHHHHHHHHHc-CCcEEEEeecCch-hhhh-cCEEEE-EeCCEEEEecChh
Q 001189 897 RRSKILVLDEATAAVDV-RTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILL-LDSGRVLEYDTPE 963 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~-~t~~~i~~~l~~~~-~~~Tvi~vtH~l~-~~~~-~D~i~v-l~~G~i~~~g~~~ 963 (1128)
.+|++|++||+..-.+. .+...+...+.... .++.+|++||+.. .+.. .+++.- +..|.+++.+.|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 66777778877654 4688999999843 3222 222222 3457777666554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=4.6e-05 Score=78.45 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+|++++|+||||||||||++.|++.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 37899999999999999999999998864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00038 Score=80.13 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCC--EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCc
Q 001189 147 VGS--LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL 224 (1128)
Q Consensus 147 ~G~--~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l 224 (1128)
.+. .+.|.||+|+|||||++.+++.+.+.. ...+.++.-.+.... ..-+...++..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~--------------~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNF--------------TAIIGEIARSLNI 100 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSH--------------HHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCH--------------HHHHHHHHHHhCc
Confidence 456 899999999999999999999876542 112344432111100 1111222222110
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc---CCcEEE
Q 001189 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTRV 299 (1128)
Q Consensus 225 ~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~---~~~tvi 299 (1128)
.... ...+-++..+. +...+ ..+|.++++||+... |......+...+..... .+.++|
T Consensus 101 -------------~~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI 163 (389)
T 1fnn_A 101 -------------PFPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALV 163 (389)
T ss_dssp -------------CCCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEE
T ss_pred -------------cCCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEE
Confidence 0111 12233332221 11122 245789999999876 88877777653322122 367889
Q ss_pred EEccCccch
Q 001189 300 LVTNQLHFL 308 (1128)
Q Consensus 300 lvtH~~~~l 308 (1128)
++||+....
T Consensus 164 ~~~~~~~~~ 172 (389)
T 1fnn_A 164 IVGHNDAVL 172 (389)
T ss_dssp EEESSTHHH
T ss_pred EEECCchHH
Confidence 999987543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.1e-05 Score=96.05 Aligned_cols=124 Identities=18% Similarity=0.107 Sum_probs=71.2
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCce-----------eecCcEEEEecCCCCCcccHHHHHhcCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASA-----------VIRGTVAYVPQVSWIFNATVRDNILFGS 208 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~-----------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~ 208 (1128)
++++++|..++|+|++|+|||||++.|++...+ ..|.+. ..+..+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT- 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA- 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC-
Confidence 457789999999999999999999999976543 223220 012235555555544443333333210
Q ss_pred CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 209 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
|+. ..++ .......-..+..++++| |+.++++.+.+.+ ..+
T Consensus 82 -----------------------pG~---------~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~~ 122 (665)
T 2dy1_A 82 -----------------------PGY---------GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW-TVA 122 (665)
T ss_dssp -----------------------CCS---------GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HHH
T ss_pred -----------------------CCc---------cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH-HHH
Confidence 100 0011 001111123466788888 9999999987554 333
Q ss_pred HccccCCcEEEEEccCccch
Q 001189 289 IRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 289 ~~~~~~~~tvilvtH~~~~l 308 (1128)
.. .+..+|++.|+.+..
T Consensus 123 ~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 123 ER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH---TTCCEEEEEECGGGC
T ss_pred HH---ccCCEEEEecCCchh
Confidence 22 367888888887653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.42 E-value=2.3e-05 Score=88.09 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=36.0
Q ss_pred CceeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Q 001189 759 PVLHGLSFTIPPSD------KVGIVGRTGAGKSSMLNTLFRIVE--LERGRILI 804 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge------~v~ivG~~GsGKSTll~~l~g~~~--p~~G~I~i 804 (1128)
.+|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 35666666666665 899999999999999999999987 45665433
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.4e-05 Score=77.17 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~ 810 (1128)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 569999999999999999999999875 88889876554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=81.86 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=68.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+ .+.+++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEESS-----------------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEECC-----------------CCHHHH
Confidence 467777767999999999999999999999887753311 12 346665533 122222
Q ss_pred HHHHHH--hCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCc
Q 001189 216 EKAIDV--TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276 (1128)
Q Consensus 216 ~~~~~~--~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~L 276 (1128)
..-+.. .++.. ..+..+. ..||+++++|++.|...+.++++++.|+|...+
T Consensus 112 ~~R~~~~~~~i~~--~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 112 IKRLIVTAGSINA--QKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp HHHHHHHHTTCCH--HHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred HHHHHHHHcCCCH--HHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 221111 12110 0000110 138999999999999999999999999987443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.40 E-value=2.6e-05 Score=89.57 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred ccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 239 IGERGVNISGGQKQRVSMA----RAV-YSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLA----Ral-~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
|+.+...+|+|++||+.++ +++ ..++++ +|+|++|......+++.+..
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4555556888899988877 666 444454 79999999988888876543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.39 E-value=4e-05 Score=85.79 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc-cCCCCCHH
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDA 848 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-~~~~~~~~ 848 (1128)
++.+|+|+|++|+|||||++.|.|.. +.+.. ..+....++..++++++..-+. + +| |+. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i~--~---iDTpG~--~~- 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQAI--Y---VDTPGL--HM- 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEEE--E---ESSSSC--CH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeEE--E---EECcCC--Cc-
Confidence 44589999999999999999999863 22211 1111112345677777643110 0 11 211 10
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchh--hhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHHH-HHHHHHHH
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQ--VSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRT-DALIQKTI 923 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~--v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~t-~~~i~~~l 923 (1128)
+-...+... +.......-...|.. +-+... +|+|++ .+++++. ..|.|+++ +.+|... ...+.+.+
T Consensus 69 ~~~~~l~~~-~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l 139 (301)
T 1ega_A 69 EEKRAINRL-MNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHL 139 (301)
T ss_dssp HHHHHHHHH-HTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHH
T ss_pred cchhhHHHH-HHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHH
Confidence 011111110 000000001122221 122233 999887 4556665 67888888 7888866 55666666
Q ss_pred HHHcC--C--cEEEEeecCchhhhh-cCEE
Q 001189 924 REEFK--S--CTMLIIAHRLNTIID-CDRI 948 (1128)
Q Consensus 924 ~~~~~--~--~Tvi~vtH~l~~~~~-~D~i 948 (1128)
.++.+ + .++.+.+|.-+.+.. +|.+
T Consensus 140 ~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 140 QFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 65432 2 356666776655544 4443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=83.19 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.36 E-value=2.9e-05 Score=88.14 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=47.3
Q ss_pred cEEEEeEEEEeCCCCCCCcee--------------eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 119 AISIRNGYFSWDSKAERPTLL--------------NINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~--------------~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+.|+|++|.||. ++..|+ |+.+.+.+||+++|+|++|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4788999999985 467898 899999999999999999999999999999865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00091 Score=76.17 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=37.7
Q ss_pred CceeeeeE--EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 136 PTLLNINL--DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 136 ~~L~~isl--~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
+.|+.+-= -+++|+++.|.||+|||||||+..+++...+.. +.+.|+.-+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~ 99 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEH 99 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 34554422 589999999999999999999999998775532 2466765543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=77.17 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=27.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=71.31 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987666553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0001 Score=83.07 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.3
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++|++++|++++|+|+||+||||++..|++.+.+..+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678899999999999999999999999999999876543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=5.5e-05 Score=79.17 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=37.0
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
....+..++..++|++++|+|+|||||||++++|++.+. ..|
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G 53 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKG 53 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcC
Confidence 457788889999999999999999999999999999886 344
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.25 E-value=5.2e-05 Score=86.29 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=38.2
Q ss_pred CceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 759 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
.+++.++..|+.|+. +.+.||+|+||||+++++.+.+.+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 588899999999998 9999999999999999999988766553
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=75.33 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=27.1
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.20 E-value=4.9e-05 Score=86.66 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=45.9
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 478899999999999999999999999999999999988888887766554
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.14 E-value=7.3e-05 Score=90.62 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=43.0
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 808 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~ 808 (1128)
.+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4678888888 899999999999999999999999999999999888743
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=74.99 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|+++.|.|++|||||||+..++.. .++..|+ ..+.+.|+.-+.. ++.+++.+.++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~~---------------~~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTENT---------------FRPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCCC---------------CCHHHHHHHHHH
Confidence 5899999999999999999999988875 3322222 1245777765532 223333333332
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChH-HHHHHHHHHHHc----cCCCEEEEeCcCCCcCHH-------H-----HH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY----SNSDVFIFDDPLSALDAH-------V-----GR 282 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGG-QkqRiaLARal~----~~~~illLDEpts~LD~~-------~-----~~ 282 (1128)
.++.. .++.+ .+- ...++. +.+.+..++.++ .+++++++|..++-.... . ..
T Consensus 180 ~g~~~~~~l~~l------~~~---~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~ 250 (343)
T 1v5w_A 180 FNVDHDAVLDNV------LYA---RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250 (343)
T ss_dssp TTCCHHHHHHTE------EEE---ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHH
T ss_pred cCCCHHHHHhce------eEe---ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHH
Confidence 22211 11111 000 012232 334555556665 579999999999877542 1 12
Q ss_pred HHHHHHHccc-cCCcEEEEEccCc
Q 001189 283 QVFDRCIRGE-LSGKTRVLVTNQL 305 (1128)
Q Consensus 283 ~i~~~~~~~~-~~~~tvilvtH~~ 305 (1128)
.+...+.... ..+.++|++.|-.
T Consensus 251 ~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 251 QMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHhCCEEEEEeece
Confidence 2333333222 2478888888854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00045 Score=79.18 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.7
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
.++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.13 E-value=9e-05 Score=85.24 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=34.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|+++++.+++|++++|+||+|||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=84.03 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=36.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEecCCCChHHhhhceEEEcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE------------LERGRILIDGFDIAKFGLMDLRKILGIIPQS 827 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 827 (1128)
-+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....|+...+.+|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 3699999999999999999999853 6789999999866544433344444444443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=74.86 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-++.++|++++|+|+||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566799999999999999999999999876
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00013 Score=83.27 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=37.0
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
+++.+|+|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3577899999999999999999999999999999888776654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=71.70 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHH----------HHHHHHHHHHHHc-----CCcEEEEeecCchhhh----
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVR----------TDALIQKTIREEF-----KSCTMLIIAHRLNTII---- 943 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~----------t~~~i~~~l~~~~-----~~~Tvi~vtH~l~~~~---- 943 (1128)
++++.+..++++...+|.+|++||+.+-.+.. ....+...+.... .+..+|.+|++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 56777777888888899999999998776532 1223333444321 1245777888765432
Q ss_pred -hcCEEEEE
Q 001189 944 -DCDRILLL 951 (1128)
Q Consensus 944 -~~D~i~vl 951 (1128)
++++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 36665444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=78.23 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=65.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+++.--+++|+.+.|.|++|+|||||+..++.-.-- .| ..+.|++=
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSL------------ 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEES------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEEC------------
Confidence 467777766999999999999999999999877643211 11 11222221
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC-CCCChhHHHHHHHHHHhccCCCEEEEeccccC
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g-~~LSgGqrqrl~lArall~~p~iLlLDEpTs~ 910 (1128)
+.+.+++.+-+... -.|.+..--..| ..||.++++|+..|...+.++++++.|+|...
T Consensus 105 -----E~s~~~l~~R~~~~---------~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT---------AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH---------HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH---------HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 11223332222110 011111100111 12899999999999999999999999998754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0017 Score=72.04 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
++.-+.|.||+|+||||+++++++.... .+-++.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~~~~i~~-~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------TFLNISA-ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------EEEEEES-TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------CeEEeeH-HHH-------------------------------
Confidence 5678999999999999999999986521 0111100 000
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
.. ..+ -+++++.|..++++...+|.++++||+.+-++.
T Consensus 91 -----~~---~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 -----TS---KYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp -----SS---SSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred -----hh---ccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 00 001 146788888888888889999999999887653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00016 Score=74.08 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECCEec
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDI 809 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g~~i 809 (1128)
++|+.++|+|++||||||+.+.|.+.+.+ .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 56 666775433
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00098 Score=74.24 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=41.0
Q ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 764 vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 677766 99999999999999999999999999888899887766543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=77.57 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCEEEEeCcCCCcCH-HHHHHHHHHHHccccCCcEEEEEccCc
Q 001189 263 NSDVFIFDDPLSALDA-HVGRQVFDRCIRGELSGKTRVLVTNQL 305 (1128)
Q Consensus 263 ~~~illLDEpts~LD~-~~~~~i~~~~~~~~~~~~tvilvtH~~ 305 (1128)
++++|++||+..-.+. .+.+.++..+-.....|+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887764 455666654333334578899999884
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00094 Score=76.48 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
.++..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999977543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00022 Score=74.63 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=29.0
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.++|.+++|+|++||||||+++.|.+.+++..|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 567899999999999999999999998876543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0004 Score=77.64 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCc-eeecCcEEEEecCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP-PVSDAS-AVIRGTVAYVPQVS 193 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~-~~~~~~i~~v~Q~~ 193 (1128)
++.+++|+|++|+|||||++.|+|.-- +.++.. ...+...+++.++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 344899999999999999999999742 111111 11233467777754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00021 Score=74.42 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=31.2
Q ss_pred EEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 751 ~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++|++- .++++++++..+++ +++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 445433 36899999988877 689999999999999999986
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0025 Score=71.84 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=75.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCC-CCC-CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|+++.|.|++|||||||+..++... .+. .|+ ..+.+.|+.=+.. ++.+++.+.++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~~---------------~~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEGT---------------FRWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCCC---------------CCHHHHHHHHHH
Confidence 68999999999999999999999888753 221 121 1245677765432 223333333333
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEeCcCCCcCHH--------H----HHH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY---SNSDVFIFDDPLSALDAH--------V----GRQ 283 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGG-QkqRiaLARal~---~~~~illLDEpts~LD~~--------~----~~~ 283 (1128)
.+... .++.+ .+.. ..++. +.+.+..++.++ .+++++++|+.++-.+.. . ...
T Consensus 165 ~g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~ 235 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 (324)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHH
T ss_pred hCCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHH
Confidence 33211 11111 0000 12233 346677777777 579999999999876431 1 122
Q ss_pred HHHHHHccc-cCCcEEEEEccCc
Q 001189 284 VFDRCIRGE-LSGKTRVLVTNQL 305 (1128)
Q Consensus 284 i~~~~~~~~-~~~~tvilvtH~~ 305 (1128)
+...+.... ..+.++|++.|-.
T Consensus 236 ~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 236 HLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHhCCEEEEEccee
Confidence 233232222 2378888888754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00019 Score=77.96 Aligned_cols=47 Identities=30% Similarity=0.407 Sum_probs=38.4
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++++.+.|. ...+++++++++++| ++|+||||||||||+++|+++..
T Consensus 28 l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 28 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 445555453 235899999999999 99999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0051 Score=70.19 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=28.8
Q ss_pred Cceeeee--EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 759 PVLHGLS--FTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 759 ~~l~~vs--l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.|+.+- =-+++|+.+.|.|++|+|||||...++...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455542 137899999999999999999998777544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00069 Score=69.91 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=20.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999988777 889999999999999999997
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00046 Score=69.92 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
.|++++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00043 Score=70.15 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00023 Score=78.54 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=37.7
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++.+.|. ...+++++++++++| ++|+||||||||||+++|+++..
T Consensus 53 ~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 53 KEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 44444443 235889999999999 99999999999999999999874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0044 Score=66.35 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
.++|+|++|+|||||++.|+|...+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 689999999999999999999765544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0004 Score=74.39 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=31.6
Q ss_pred eeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 761 LHGLSFTIP---PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 761 l~~vsl~i~---~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
|.++|+.+. +|..+.|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555566555 8999999999999999999999999887 666644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0035 Score=67.95 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=24.1
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++++++.+++| +.|+||+|+||||++++|.+...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 89999999999999999998764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0016 Score=76.07 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
++.+++++|++||||||++..|++.+.+. | .+|.++.-+++ .....+. .....+..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G------~kVllv~~D~~--r~~a~eq-----------L~~~~~~~gv-- 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-G------YKVGLVAADVY--RPAAYDQ-----------LLQLGNQIGV-- 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-T------CCEEEEEECCS--CHHHHHH-----------HHHHHHTTTC--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C------CeEEEEecCcc--chhHHHH-----------HHHHHHhcCC--
Confidence 57899999999999999999999988654 2 24556655532 1111111 1111111111
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC-CC--cCHHHHHHHHH
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL-SA--LDAHVGRQVFD 286 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt-s~--LD~~~~~~i~~ 286 (1128)
| ..... ....--.-.+-+++++...++|++|+|+|- .+ .|+.....+..
T Consensus 154 -----~----~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 154 -----Q----VYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp -----C----EECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred -----c----eeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 1 00000 111222223446777777899999999997 45 77776555543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=67.52 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.2
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666655 999999999999999999863
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00084 Score=68.10 Aligned_cols=27 Identities=48% Similarity=0.496 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++|.+++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00041 Score=74.22 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=27.1
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+.+.++|++++|.|+||||||||+++|.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345679999999999999999999999997
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.002 Score=69.03 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.6
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
+..|+.+.++|||||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3568999999999999999887664
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00079 Score=66.99 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 889999999999999999873
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0025 Score=74.20 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=37.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
++++..|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..
T Consensus 80 ~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 80 EALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp HHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455556421 1 577887 899999999999999999999999987753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0019 Score=72.66 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.-+.|.||+|+|||||++++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467899999999999999999987643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00027 Score=74.52 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDG 806 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g 806 (1128)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45678999999999999999999999999988888 888875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00065 Score=69.03 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|++++|+|++||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0023 Score=71.27 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.++++..+.|.||+|+|||||+++|.+...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999998763
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.003 Score=71.01 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+..+.|.||+|+|||||++.+.+.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568899999999999999999876543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00044 Score=83.43 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.5
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.+++|++++|+|+||||||||+++|+|.+.|.+|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999988765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00069 Score=72.54 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=26.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHh---cCCCCCCceE
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLF---RIVELERGRI 802 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I 802 (1128)
.-+++|.||+||||||+.+.|. |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4489999999999999999998 5545556655
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0048 Score=68.63 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I 802 (1128)
...+.|+||+|+||||++++|.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45688999999999999999999987766643
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00047 Score=78.36 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.3
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+++|+++|| ...++......+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67889988888999888755556677788776543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00045 Score=72.40 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=26.3
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
...+|..++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0023 Score=66.57 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
..+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678899999999999999999876543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=70.75 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred ceeeeeEEee---CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 137 TLLNINLDIP---VGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 137 ~L~~isl~i~---~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
-|.++||.+. +|.+++|.|++||||||+++.|...+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4667777766 8999999999999999999999998876
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00084 Score=72.00 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=67.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
.+.+|+.++++|++||||||++.+++.......+. ...++++.|.|... ..++.+|+........ -..+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~------~~~~ 141 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEP------GKSC 141 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT------TSSE
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhcccc------CceE
Confidence 34578999999999999999888765432111111 12356677777543 4466666642110000 0000
Q ss_pred CcHHHHhcCCCCCcccccCC---CCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHH
Q 001189 223 SLQHDLDLLPGGDVTEIGER---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCI 289 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t~vg~~---g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~ 289 (1128)
+.... .+...... ..-.+.|.-.+.. +..+.+.+++++||+-. ++|........+.+.
T Consensus 142 g~~~~-------~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 142 GYSVR-------FESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EEEET-------TEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred EEeec-------hhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00000 00000000 1113457666653 33588999999999976 577765544444443
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0014 Score=75.37 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.2
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI-----------VELERGRILIDGF 807 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~-----------~~p~~G~I~i~g~ 807 (1128)
.+..|.++||||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 6788898887763
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00056 Score=77.87 Aligned_cols=52 Identities=19% Similarity=0.061 Sum_probs=43.1
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..+ +++++..+|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-------~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-------KVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEeecCC
Confidence 578899999999999999999999999999999998866432 4566666553
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=67.61 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887754445544
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0098 Score=65.30 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.3
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.++..+.|.||+|+||||+++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0035 Score=62.82 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
-+++|+|++|+|||||++.|.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0046 Score=73.19 Aligned_cols=57 Identities=9% Similarity=0.161 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+.|.+....+...+++++++|+..... ++.. .+..+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHH--cCCCEEEEEECccch
Confidence 357777888888889999777665444 4444 44566677765 577888888877654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=64.75 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.++.-+.|.||+|+|||||+++++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=67.92 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999876543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=64.73 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.00044 Score=79.37 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=36.4
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
.+.+.++|++..|... .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568889998888543 5789999876 99999999999999999988666666554443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0023 Score=65.73 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=26.6
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0061 Score=64.25 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.0
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78888888888876544467788888876544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0017 Score=66.62 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LID 805 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~ 805 (1128)
+...+|..+.|+|++||||||+.+.|.+.+.+..|.+ .++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3446799999999999999999999999888776765 344
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0021 Score=73.22 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
++.+++|+|++|||||||++.|+|.+.+..+ +|+++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-------~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-------KLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-------eEEEEeecCC
Confidence 4679999999999999999999998766533 4677776664
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=66.06 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=24.5
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+.++++.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455666654 999999999999999998853
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0028 Score=65.13 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
++|+..++|.+++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0043 Score=65.79 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999988664
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0024 Score=66.72 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
...+|.+++|+|++||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=65.80 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
..+.|+||+|+||||++++|++.+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 4788999999999999999999876543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.019 Score=64.43 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
-+++|+.+.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987775
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0031 Score=64.28 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
++|++++|+|++||||||+++.|.+.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999997754
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=65.29 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.4
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 88999999999999999886
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=68.12 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.......| .++.|++=+ .+.+++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE-----------------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLE-----------------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESS-----------------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECC-----------------CCHHHH
Confidence 356766666999999999999999999999888765432112 235555432 122222
Q ss_pred HHH-H-HHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCc
Q 001189 216 EKA-I-DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276 (1128)
Q Consensus 216 ~~~-~-~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~L 276 (1128)
..- + ...++. .. .+. ...|+..+++|+.-|...+.+.++++.|+|...+
T Consensus 245 ~~R~~~~~~~i~--~~--------~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 245 TLRMMCSEARID--MN--------RVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp HHHHHHHHTTCC--TT--------TCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred HHHHHHHHcCCC--HH--------HHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 221 1 111111 01 111 1369999999999888888888999988774443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0057 Score=63.54 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.-+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999987643
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0033 Score=64.13 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEe
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFD 808 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~ 808 (1128)
-..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 3677776644
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.028 Score=55.15 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.+.-+-|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3455889999999999999999887544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=62.64 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0057 Score=62.87 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.3
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988777 8899999999999999999974
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.003 Score=65.76 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=26.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
..+++|+|++||||||+.+.|.+.+ |.+.+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999998875 4555654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=63.73 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0088 Score=68.18 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=35.4
Q ss_pred CceeeeeE---EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecC
Q 001189 136 PTLLNINL---DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 192 (1128)
Q Consensus 136 ~~L~~isl---~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~ 192 (1128)
+.|+.+ | -+++|+++.|.|++|+|||||...++...... | ..+.|+.-+
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g------~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G------KTCAFIDAE 100 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-T------CCEEEEESS
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-C------CeEEEEeCC
Confidence 456555 3 38999999999999999999998887654221 2 246676654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0094 Score=70.49 Aligned_cols=55 Identities=25% Similarity=0.177 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcC-CCcCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 248 GGQKQRVSMARAVYSNSDVFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 248 GGQkqRiaLARal~~~~~illLDEpt-s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.|++-..++...+.++|++|+.-.. .++... ..++.+.+.+ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~---~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR---TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT---CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH---cCCCEEEEEECcc
Confidence 34888888899999999988765444 445554 4556554322 4677788776654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0061 Score=62.18 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0052 Score=63.92 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.002 Score=66.97 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=32.0
Q ss_pred EEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 126 ~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|++ -.++++++++..+++ .++++|++|+|||||++.+.+.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 345553 346899999998887 5899999999999999999873
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0036 Score=67.92 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=33.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.++|-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 356688999999999999999999998764 35677877443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0023 Score=67.33 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+.+++|.+++|+|++||||||+.+.|.+.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 55788999999999999999999999998865444
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0072 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
.+..+.|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998887888888774
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=67.37 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=30.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFR-----------IVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g-----------~~~p~~G~I~i~g 806 (1128)
|-+++|||++|+|||||++.|++ -+.|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788887765
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0044 Score=63.55 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=27.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
...+|.+++|+|++||||||+.+.|++.+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999887653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.083 Score=60.34 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
-+++|+.+.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.018 Score=67.70 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=64.5
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+.+.--+++|+.+.|.||+|+|||||+.-++.-.....|. .+.|+.=
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~sl------------ 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSL------------ 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEES------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEEC------------
Confidence 4577776568999999999999999999998887654322220 1222111
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
+.+.+++.+-+... -.|.+..--..| .||..+.+|+.-|...+.+.++.+.|+|...+
T Consensus 238 -----E~~~~~l~~R~~~~---------~~~i~~~~l~~g-~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 238 -----EMPAAQLTLRMMCS---------EARIDMNRVRLG-QLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp -----SSCHHHHHHHHHHH---------HTTCCTTTCCGG-GCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred -----CCCHHHHHHHHHHH---------HcCCCHHHHhCC-CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 11222222211100 012211100112 58999999998888888888899988875443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0039 Score=74.20 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=33.2
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++++++.+++| +.|+||+|+|||||+++|+|+..
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999 99999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.064 Score=61.11 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.0
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+...+.|.||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0097 Score=68.01 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.016 Score=59.09 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCCc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI-----VELERG 800 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~-----~~p~~G 800 (1128)
+++|+|++|+|||||++.+.+- +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999766643 455555
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0035 Score=70.85 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=34.0
Q ss_pred CceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Q 001189 759 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 468888999999999 99999999999999999998653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0088 Score=62.14 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0038 Score=70.56 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.5
Q ss_pred CceeeeeEEeeCCCE--EEEEcCCCccHHHHHHHHhcCC
Q 001189 136 PTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888889999999 9999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.013 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.02 Score=67.34 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH-
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY- 215 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~- 215 (1128)
-|+.+.--+++|+++.|.|++|+|||||+.-++...-.. | .++.|++=+ .+.+++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g------~~vl~fSlE-----------------ms~~ql~ 241 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------DVVNLHSLE-----------------MGKKENI 241 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T------CEEEEECSS-----------------SCTTHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C------CEEEEEECC-----------------CCHHHHH
Confidence 455554468999999999999999999987776533111 1 246666543 111111
Q ss_pred HHHHH-HhCcHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHH
Q 001189 216 EKAID-VTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 216 ~~~~~-~~~l~~-~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~ 280 (1128)
.+.+. ..++.. .+. .|. ..|+..+.+|+.-|...+.+.++++.|+|. +++..
T Consensus 242 ~R~~~~~~~i~~~~l~---~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~ 295 (444)
T 3bgw_A 242 KRLIVTAGSINAQKIK---AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY 295 (444)
T ss_dssp HHHHHHHSCCCHHHHH---HTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH
T ss_pred HHHHHHHcCCCHHHHh---ccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH
Confidence 11111 112211 111 010 127788888888887777788888888774 45443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0092 Score=60.89 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0046 Score=74.78 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.0
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+++++++++ +|+.++|+||+|+|||||+++|++.+.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4677888888 8999999999999999999999998855
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.014 Score=65.33 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.-+.|.||+|+|||+|+.+|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999987654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=60.21 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
+++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997533
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=60.46 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=59.65 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
=+++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.048 Score=57.18 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++.++++||+-. +|+.....+...+ .....+..+|++|++...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l-~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTL-EEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHH-HSCCTTEEEEEEESCGGGS
T ss_pred CceEEEEECccc-ccHHHHHHHHHHH-hcCCCceEEEEEeCChHhC
Confidence 578999999765 7887777666543 3223456788888876543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=55.96 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.5
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++..-+.|.||+|+||||+++++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334558899999999999999998754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=62.23 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|.+++|+|++||||||+.+.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999998743
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.033 Score=59.01 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh-----------hhhcCEEEEEe
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-----------IIDCDRILLLD 952 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~-----------~~~~D~i~vl~ 952 (1128)
+++++++||.-- ++.+.-+.+.. |.. .+.+||++-|+.++ +.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 76553333322 333 48899999994322 23389988764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.2 Score=55.24 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+..+.|.||+|+||||+++.+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998887653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.016 Score=58.70 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998663
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.12 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.|..-+.|.||.|+|||+|++++....
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.057 Score=55.86 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=31.4
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
.++.+|++||.- .++......+.+.+.+...+..+|++|.+.+.
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 367899999964 46777777788888764445667777776543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.012 Score=63.67 Aligned_cols=34 Identities=41% Similarity=0.611 Sum_probs=24.3
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33444455555 88999999999999999998763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.63 E-value=0.0061 Score=67.79 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=37.5
Q ss_pred ee-eeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 139 LN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 139 ~~-isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
++ ++++.+ |++++++|++|+||||++..|++.+.+..+ ++.++..++
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-------~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-------KVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-------CEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEecCC
Confidence 45 778776 999999999999999999999998865422 466666654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=61.90 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.017 Score=57.93 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=59.90 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=26.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
..+|+|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666664
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=63.18 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=28.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.+++..+.+ .|.-++|+|+||+||||+...|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 688999999999999999999987
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.062 Score=63.12 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555554589999999999999999999877664
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.0032 Score=72.08 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.+.|++..|.. +.++++++|+| +|+|++|+|||||++.|.|...+
T Consensus 17 ~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 4778888777752 46788998876 99999999999999999886543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.048 Score=60.71 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
-.+++|..+.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998754
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.018 Score=59.43 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999855
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.019 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
-.+++|+|++|||||||++.|++.+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999987653
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=58.35 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|.+++|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.0093 Score=64.58 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.2
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++.++.|+|++||||||+.+.|...+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1128 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-77 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-56 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-74 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-70 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-68 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-65 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-62 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-61 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-34 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-28 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 6e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 253 bits (647), Expect = 2e-77
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Query: 735 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794
P G I + V +Y P+L ++ +I + V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 795 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-DPFSEHSDADLWEA 853
++ G+ILIDG +I F LR +G++ Q +LFS TV+ N+ +D ++ EA
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
+ A+ D I G D +V E G S GQ+Q LS++R L IL+LDEAT+A+D+
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 914 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 973
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 974 SKMVQS 979
+
Sbjct: 247 EHLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 194 bits (494), Expect = 2e-56
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 15/246 (6%)
Query: 111 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170
P+ I I + F ++ E P L +INL I G VA VG +G GK++LI+ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 171 ELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEK 217
S + +R + V Q + +F+ TV++NIL G +
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277
A + + + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 278 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 337
+ + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 187 LESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245
Query: 338 FQKLME 343
++ L
Sbjct: 246 YEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 244 bits (625), Expect = 2e-74
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 3/241 (1%)
Query: 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800
+G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEALERAH 858
IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA A+
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G ++++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
Query: 979 S 979
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 186 bits (474), Expect = 7e-54
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+ RN F++ + E P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 179 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSL 224
+ +R VA V Q +FN TV +NI + + + E+A +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
++ + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 285 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343
+ +T +++ ++L + Q D I++V +G++ E GT +L ++ +L +
Sbjct: 192 QA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 231 bits (591), Expect = 6e-70
Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDA 862
IDG D+A LR+ +G++ Q VL + ++ N+ + S + A + A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 923 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+ + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 166 bits (421), Expect = 6e-47
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I+ RN F + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQ 59
Query: 180 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQ 225
+I G V V Q + + N ++ DNI + + A +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
+ L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELFQKLME 343
+ G+T +++ ++L + DRII++ +G + E+G ++L S L+ L +
Sbjct: 180 RN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 227 bits (580), Expect = 3e-68
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 738 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795
G ++F+DV Y RP+ VL GL+FT+ P + +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEA 853
+ G++L+DG + ++ L + + + Q P +F +++ N+ + + ++ A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913
++ I G D +V EAG S GQRQ ++L+RAL+R+ +L+LD+AT+A+D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 914 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 971
+ +++ + E E S ++L+I L+ + D IL L+ G + E T ++L+ +G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 972 SFSKMVQS 979
+ MVQ+
Sbjct: 244 CYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (467), Expect = 6e-53
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+ ++ F++ ++ + L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 179 ------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSL 224
+ VA V Q +F ++++NI +G +P E A +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
+ LP G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 285 FDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343
E ++ +L+T L + Q D I+ + G ++E GT + L + +++
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 218 bits (558), Expect = 2e-65
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKD 861
IDG I L + R +G + Q + +GT+R NL E ++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 921
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 922 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979
+ K T L+IAHRL+TI+D D+I ++ G++ EL++ ++K V
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (439), Expect = 2e-49
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 174
+S R+ F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 175 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 225
+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 180 -KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (535), Expect = 9e-62
Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 3/268 (1%)
Query: 91 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIPVG 148
+ ++ + F LL ++G S FS P L NINL+I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 149 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 208
++AI G TG GKTSL+ +LGEL S+ G V++ Q SWI T+++NI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV 121
Query: 209 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268
+++ RY+ + LQ D+ D T +GE GV +SGGQ+ R+S+ARAVY ++D+++
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 328
D P LD QVF+ C+ ++ KTR+LVT+++ L + D+I+++H+G GTF
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241
Query: 329 EDLSNNGELFQKLMENAGKMEEYVEEKE 356
+L + F + +++ EE+
Sbjct: 242 SELQSLRPDFSSKLMGYDTFDQFTEERR 269
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 207 bits (529), Expect = 6e-61
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 720 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 779
EL + +SN ++ F + L P VL ++ I + + I G
Sbjct: 18 ELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGS 70
Query: 780 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839
TG+GK+S+L + +E G I G + Q + GT++ N+
Sbjct: 71 TGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENI 117
Query: 840 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899
+ + ++ L+ I + + + + E G S GQR +SL+RA+ + +
Sbjct: 118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 900 KILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958
+ +LD +DV T + + + + + + T +++ ++ + D+IL+L G
Sbjct: 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237
Query: 959 YDTPEELLSNEGSSFSKMVQS 979
Y T EL S SK++
Sbjct: 238 YGTFSELQSLRPDFSSKLMGY 258
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 140 bits (354), Expect = 6e-38
Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+K E++ R+ ++ L+ TI + + ++G +G GK++ L + + E GRI
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 862
D+ L + + ++ QS ++ TV N+ + E +R + A
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA 120
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
L ++ ++ S GQRQ ++++RA++ +L++DE + +D + ++
Sbjct: 121 AEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 923 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
I++ + T + + H + DRI +++ G++L+ +P E+ S F
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (274), Expect = 3e-27
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+ + N + + +NL I G + ++G +G GKT+ + + G P ++
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEG 61
Query: 179 SAVIRGT-----------VAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAI 219
++ V Q ++ + TV +NI F + R A
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
++ ++ L+ P +SGGQ+QRV++ARA+ DV + D+PLS LDA
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 280 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ + + ++ +L T + VT+ + DRI +++ G + + G+ ++
Sbjct: 171 LRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 2e-37
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ +DV R L LS + + + +VG GAGKS++L + + +G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 861
G + + L + Q F+ V L + + +L + A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 862 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVR 914
L LD ++ + S G+ Q + L+ +L+ ++L+LDE ++DV
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 915 TDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ + K + + +++ +H LN + R LL G++L EE+L+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 3e-21
Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAV- 181
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 69
Query: 182 IRGTVAYVPQVSWI-FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 238
+ AY+ Q F V + +L L
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 124
Query: 239 IGERGVNISGGQKQRVSMARAVYS-------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
+SGG+ QRV +A V + + D+P+++LD +
Sbjct: 125 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 292 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGEL 337
G V+ ++ L+ + R L+ G + G E++ L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 3e-37
Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 13/241 (5%)
Query: 744 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
IK ++ + + L+ +S +P G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 802 ILIDGFDIAKFGLMD---LRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERA 857
+L+DG ++ + R+ +G+I Q L S TV N+ E + E R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
+ + +GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T
Sbjct: 122 --TELLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 918 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974
I + +++ T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 975 K 975
+
Sbjct: 238 Q 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 6e-25
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 120 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I + N + L N++L +P G + ++G +G GK++LI + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 177 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFE-------PARY 215
R + + Q + + + TV N+ + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
+ + + L D P N+SGGQKQRV++ARA+ SN V + D+ SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 276 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 333
LD R + + G T +L+T+++ + ++ D + ++ G + E+ T ++ +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 334 N 334
+
Sbjct: 231 H 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (334), Expect = 2e-35
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 10/235 (4%)
Query: 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
G++ +D+ R + +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 860
+ + G ++ ++RK++ +P+ + L + + E E +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--E 115
Query: 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920
A GL ++ + +S G + L ++RAL+ ++ +LDE T+ +DV ++
Sbjct: 116 RATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 921 KTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973
K +++ + T+L+ +H + + CDRI L+ +G ++E T EEL +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 5e-26
Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
A+ +++ ++ L I+ +I G + ++G G GKT+ + + + P S
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 177 ---------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAI 219
+ +R ++Y+P+ + + N + + F + F E+A
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 220 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279
++ L + S G +++ +ARA+ N + I D+P S LD
Sbjct: 119 EIAGLGEKIKDRVST-----------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 280 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN---- 334
R+V + G T ++ ++ + + + DRI L+H G + E GT E+L
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 335 --GELFQKLME 343
E+F+++++
Sbjct: 228 NIEEVFEEVVK 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 132 bits (334), Expect = 4e-35
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
+ D+ RY VL G+S D + I+G +G+GKS+ L + + + G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 804 IDGFDIAKFGLMD-------------LRKILGIIPQSPVLFSG-TVR-FNLDPFSEHSDA 848
++G +I D LR L ++ Q L+S TV ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908
+A ERA + + + AQ S GQ+Q +S++RAL +L+ DE T
Sbjct: 121 SKHDARERA--LKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 909 AAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966
+A+D + + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 967 SN 968
N
Sbjct: 238 GN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (262), Expect = 2e-25
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 176
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 177 ----------------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPA 213
+ ++R + V Q + + TV +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 214 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271
+ + + +SGGQ+QRVS+ARA+ DV +FD+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 272 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 330
P SALD + +V + GKT V+VT+++ F V +I +H+G ++EEG E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 331 LSNN 334
+ N
Sbjct: 236 VFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 129 bits (327), Expect = 2e-34
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 744 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801
IK ++V Y E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 802 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD---PFSEHSDADLWEA 853
+ ID +L KI +G + Q L T N++ F E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 854 LERAHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
+RA + L+ + + S GQ+Q ++++RAL I++ D+ T A+D
Sbjct: 122 RKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 913 VRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962
+T I + +++ + T++++ H +N +RI+ L G V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 2e-28
Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 120 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I ++N ++ E L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 177 --------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDV 221
+ + + R + +V Q + T +N+ F+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 222 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
+ + + + +SGGQ+QRV++ARA+ +N + + D P ALD+ G
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 282 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327
++ + + E GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 182 EKIMQLLKKLNEED-GKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 124 bits (312), Expect = 3e-32
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ E++V + L G+S ++ D I+G G+GKS+++N + ++ + GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 804 IDGFDIAKFGLMDL-RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERA 857
+ DI +L + Q+P TV NL E L+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 858 HLKDAIRR-----NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912
++ + + L L S GQ +L+ + RAL+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 913 VRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
I + E + K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (251), Expect = 4e-24
Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 186
+++ + G + I+G G GK++LI+ + G L + + + +
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 187 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD--------LDLLPGGDVT 237
Q TV +N+L G ++ +L ++
Sbjct: 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141
Query: 238 EIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296
+ +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ + + G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 201
Query: 297 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
T +++ ++L + D + ++ G + EG E+ N
Sbjct: 202 TFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (305), Expect = 2e-31
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802
++ DV + + +S + + + ++G +G GK++ L + + E RG+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 803 LIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERA 857
I +A + ++ QS L+ + N+ + E +R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
++ LGL ++ S GQRQ ++L RA++R+ ++ ++DE + +D +
Sbjct: 121 --REVAEL--LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 918 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
++ +++ T + + H + DRI +++ G + + +P+E+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 1e-21
Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 178
+ + + + + E + ++L++ G + ++G +G GKT+ + + G P S
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRG 58
Query: 179 SAVIRGTV-------AYVPQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQ 225
I + +VP + L+ + P + K Q
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 226 HDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
++ +TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 285 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ G T + VT+ + DRI +++ G++++ G+ +++ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 120 bits (302), Expect = 4e-31
Identities = 48/232 (20%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ + + + Y + G+ +P V ++G GAGK++ L+ + +V ++G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 804 IDGFDIAKFGLMDLRKI-LGIIPQSPVLFSG-TVRFNL--DPFSEHSDADLWEALERAHL 859
+G DI + ++ + ++P+ +F TV NL ++ + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
L ++ + G S G++Q+L++ RAL+ R K+L++DE + + + +
Sbjct: 125 L------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 920 QKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969
+ I++ + T+L++ + +L++G+++ ELL NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 104 bits (262), Expect = 9e-26
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDASAVIRGT 185
I+L +P G +V ++G G GKT+ +SA+ G + G
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245
TV +N++ G+ + D+ + L + + G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLGGT 139
Query: 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305
+SGG++Q +++ RA+ S + + D+P L + +VF+ + G T +LV
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 306 HFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+V ++ G + EG +L +N
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 8e-31
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 12/236 (5%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ ++V + V ++ I + V VG +G GKS++L + + + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERAHLKDA 862
I + + +G++ QS L+ N+ + + A +R
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922
L L + + S GQRQ +++ R L+ + +LDE + +D ++
Sbjct: 115 AEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 923 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
I + TM+ + H + D+I++LD+GRV + P EL F
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (244), Expect = 2e-23
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 174
+ ++N +W E +INLDI G V VG +G GK++L+ + G
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 175 -----VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAIDV 221
+ + V V Q ++ + +V +N+ FG R + +V
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 222 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281
L H LD P +SGGQ+QRV++ R + + VF+ D+PLS LDA +
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 282 RQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
Q+ R + G+T + VT+ + D+I+++ G V + G +L +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 116 bits (293), Expect = 2e-30
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
++ D+ + Y PVL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-----SDADLWEALERA 857
+G I ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917
+ D ++ S G + + L+ LL ++I VLD+ A+D +
Sbjct: 115 EVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 951
+ K+I E K ++II+ R CD L
Sbjct: 163 KVLKSILEILKEKGIVIISSREELSY-CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (259), Expect = 8e-26
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
+ IR+ +D +P L I + I G++V G G GKT+L+ + L P+
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 180 AV-------IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 231
++G + ++P+ + +V D + ++ + K +D L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291
+V ++ ++ +S G +RV +A + N+++++ DDP+ A+D +V I
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 292 ELSGKTRVLVTNQLHFLSQVDRIILVHE 319
L K V+++++ LS D +H+
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (282), Expect = 1e-28
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I+ E + +++ L LS + + I+G TGAGK+ L + + GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 804 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDADLWEALERAH 858
+DG D+ L + + + Q+ LF + F + + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918
++ + RN L L S G++Q ++L+RAL+ KIL+LDE +A+D RT
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 919 IQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975
++ + + T+L I H DRI ++ G++++ PEE+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 93.6 bits (232), Expect = 7e-22
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179
I I + W + + L N++L + G I+G TG GKT + + G P S
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 180 AVI----------RGTVAYVPQVSWIF-NATVRDNILF----GSAFEPARYEKAIDVTSL 224
+ + +A+V Q +F + V+ N+ F +P R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284
+H LD P + +SGG++QRV++ARA+ +N + + D+PLSALD
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 285 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
+ + + T + +T+ + DRI +V +G + + G E++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 111 bits (278), Expect = 7e-28
Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803
I ++V ++ L ++ I ++ GI+G +GAGK++ + + + G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 804 IDGFDIAKFGLMDLRKI---LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL 859
D +A G + + +G++ Q+ L+ T N+ + E +R
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-- 121
Query: 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 919
++ + L + ++ S Q+Q ++L+RAL++ +L+LDE + +D R
Sbjct: 122 EEVAKI--LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 920 QKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968
+ ++E T+L+++H I DR+ +L G++++ PE+L N
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.1 bits (215), Expect = 2e-19
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 176
I ++N + K + L N+N++I G I+G +G GKT+ + + G P +
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 177 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-------SAFEPARY 215
+ V Q + N T +NI F R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 275
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 276 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 333
LDA + G T ++V++ + + DR+ ++ +G + + G EDL +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 334 N 334
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.9 bits (238), Expect = 1e-22
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823
+ F + D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGF 74
Query: 824 IPQSPVLFSGTVRF--NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881
+PQ LF + + + K LG+ +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARL 127
Query: 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL 939
S G+RQ ++L+RAL+ + ++L+LDE +AVD++T ++ + +R +L + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 940 NTIID-CDRILLLDSGRVLEYDTPEELLSN 968
D + ++ +GR++E +EL S
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.6 bits (201), Expect = 9e-18
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVA 187
LN++ ++ ++G TG GK+ + + G + P ++ RG +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-IG 73
Query: 188 YVPQVSWIFNA-TVRDNILFGSAFEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGE 241
+VPQ +F +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVL 300
+SGG++QRV++ARA+ + + D+PLSA+D + + +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 301 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 334
VT+ L + + D + ++ G + E+G ++L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832
K+ I G G GK++++ + + + + +I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 833 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892
S + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 952
A R K++++DE + ++ + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 953 SGRVLE 958
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 21/193 (10%)
Query: 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 210
+ I G G GKT+L+ ++ L A V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270
+ + + A V I D
Sbjct: 61 S--------------KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330
+ + R I + V V I + ++ E
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP--- 162
Query: 331 LSNNGELFQKLME 343
N + + ++
Sbjct: 163 -ENRDVILEDILS 174
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)
Query: 774 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 833
V + G G GK+++++ +++ + + + G + + + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 834 TVRFNLDPFS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887
D +E L L++A + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 938
+ R L ++L + AL+++ + + +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100
+ V+ G + + G +T + +L PL L T + + S+ R+ + +
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 36/327 (11%), Positives = 98/327 (29%), Gaps = 18/327 (5%)
Query: 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 466
+ + YK + + ++ + + + + Y D +
Sbjct: 6 LQFVKPYK------YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 467 LLSFGQVLVTLA---------NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGR 517
++ G L Y +S + + + + F+ N +G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 518 IINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 577
+I+R D+ + + ++ ++ + A + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 578 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 637
+ R++ R S + V E + G+S ++++ D A K + L
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 638 NMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697
+ N + + V + + A + T+ + Y + L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 698 VLRLASLAENSLNAVERVGNYIELPSE 724
++ + S +++RV I+ +
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 44 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAE 103
V+ F + LT S L PL L N+ Q + + + L +E
Sbjct: 257 VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316
Query: 104 E 104
+
Sbjct: 317 Q 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 28/318 (8%), Positives = 91/318 (28%), Gaps = 7/318 (2%)
Query: 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 466
+ ++ +K +++ + L + L D KT +
Sbjct: 8 WPTIAPFK------AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 526
++ + + IS + + + ++
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG-HMMGMPVAFFDKQSTGTLLSRIT 120
Query: 527 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 586
D ++ + + V + S L ++ S + L++L + + ++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 587 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 646
+ + ++ + A L + + + + + L M +
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 647 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 706
I I+ + A + + A T+ ++ S + + L ++ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 707 NSLNAVERVGNYIELPSE 724
+ A + + ++ E
Sbjct: 301 RGMAACQTLFAILDSEQE 318
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.004
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 773 KVGIVGRTGAGKSSMLNTL 791
KV I GR AGKSS+LN L
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1128 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.72 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.45 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.94 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.87 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.64 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.43 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.28 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.2 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.14 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.91 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.76 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 96.72 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.26 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.25 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.23 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.07 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.04 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.02 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.94 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.9 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.86 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.84 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.8 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.7 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.69 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.62 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.61 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.57 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.56 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.48 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.45 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.41 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.38 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.33 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.32 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.3 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.27 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.23 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.21 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.15 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.11 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.05 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.02 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.98 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.96 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.95 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.86 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.84 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.84 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.82 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.76 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.68 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.62 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.57 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.51 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.5 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.5 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 94.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.49 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.42 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.41 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.39 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.33 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.31 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.29 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.24 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.23 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.23 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.21 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.2 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.2 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.19 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.18 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.18 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.13 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.08 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.06 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.02 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.97 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.95 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.93 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.86 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.85 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.8 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.79 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.78 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.73 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.69 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.61 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.58 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.52 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.49 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.43 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.43 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.39 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.38 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.33 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.3 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.25 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.22 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.21 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.2 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.16 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.15 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.1 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.06 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.02 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.93 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.92 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.88 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.81 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.81 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.74 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.73 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.72 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.72 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.67 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.59 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.52 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.44 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.39 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.31 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.24 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.21 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.2 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.19 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.08 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.07 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.04 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.96 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.83 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.82 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.82 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.76 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.72 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.72 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.7 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.67 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.66 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.66 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.61 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.6 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.59 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.56 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.56 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.52 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.52 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.51 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.47 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.45 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.37 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.36 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.33 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.32 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.21 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.19 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.12 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.1 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.04 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.01 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.01 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.94 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.88 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.87 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.82 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.66 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.56 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.54 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.53 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.51 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.46 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.45 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.44 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.41 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.4 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.4 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.34 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.34 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.33 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.31 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.3 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.3 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.24 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.22 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.17 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.16 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.08 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.86 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.84 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.84 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.83 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.82 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.8 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.72 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.61 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.58 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.54 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.51 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.51 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.5 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.42 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.36 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.27 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.25 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.18 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.18 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.13 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.1 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.97 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.96 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.9 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.89 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.85 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.81 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.79 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.79 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.78 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.69 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.64 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.55 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.54 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.53 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.48 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.43 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.29 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.25 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.21 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.2 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.18 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.12 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.06 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.01 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.98 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.92 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.86 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.82 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.76 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.76 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.71 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.71 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.66 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.65 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.5 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.31 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.25 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.15 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.15 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.1 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.09 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.05 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.0 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.95 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.93 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.92 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.91 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.89 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.62 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.53 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.43 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.32 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.27 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.19 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.19 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.68 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.68 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.67 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.66 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.53 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.5 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.29 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.15 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.11 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.01 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.85 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.78 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.76 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.73 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.65 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.61 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 84.44 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.34 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.28 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.09 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.65 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.62 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.57 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.4 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.35 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.25 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.0 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.9 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 82.89 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.46 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 82.44 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 81.83 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.81 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.76 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.52 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.9 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.65 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.56 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-61 Score=522.23 Aligned_cols=237 Identities=34% Similarity=0.550 Sum_probs=227.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+|+||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++++++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 38999999999877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
||||+|.+|++||++||.+..+ .++++++++++.+++.+++..+|.|++|.+++.|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 9999999999999999987654 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
||||||||+||+.+++.|++.|++..+++|+|+||||++.+..||||+||++|+|++.|+|+||++++.+.|.++++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999889999999999999998899999999999999999999999887888888764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.3e-61 Score=519.62 Aligned_cols=239 Identities=34% Similarity=0.571 Sum_probs=227.7
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
.+|.|+|+||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|++.++.+.+|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 46889999999999877678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||||+|.+|++||++||.++. ..++++++++++.+++.+++.++|.|++|.++++|.+|||||||||||||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 4589999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+|||||||||+||+.+++.|++.|++..+++|+|+||||++.+..||||++|++|+|++.|+|+||+++. +.|++++.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~-~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999864 57877765
Q ss_pred h
Q 001189 979 S 979 (1128)
Q Consensus 979 ~ 979 (1128)
.
T Consensus 252 ~ 252 (255)
T d2hyda1 252 I 252 (255)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.9e-60 Score=514.20 Aligned_cols=239 Identities=36% Similarity=0.568 Sum_probs=227.4
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..|.|+|+||+|+|+++..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|++.++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 34789999999999876668999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||||+|.+|++|+++|+.+.. ..++++++++++.+++.++++.+|.|++|.++++|.+|||||||||+|||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999987653 468899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||+++ .+.|++++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999999999999999999999998889999999999999988999999999999999999999987 46788887
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-59 Score=505.07 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=222.6
Q ss_pred CCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 740 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.+|.|+|+||+|+|+.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++.+++..+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 45789999999999743 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
++|+||||+|.+|++||++|+.+.. ..++.++.++.+.+++.++++.+|.|+++.+++.|.+||||||||++|||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 9999999999999999999998652 35678889999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
++|+|||||||||+||+.++..|++.|++..+ ++|+|+||||++.+..||||+||++|+|++.|+|+||+++. +.|+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHH
Confidence 99999999999999999999999999988654 79999999999999889999999999999999999999875 6788
Q ss_pred HHHH
Q 001189 975 KMVQ 978 (1128)
Q Consensus 975 ~~~~ 978 (1128)
+|++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.1e-59 Score=508.10 Aligned_cols=234 Identities=33% Similarity=0.567 Sum_probs=221.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+|+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7999999999754 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccccHhhccccC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~--~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
|||+|.+|++||++|+.+. ...++++++++++.+++.+++..+|.++++.++++|.+|||||||||+|||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999764 34678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
||||||||+||+.+++.|++.|++..+++|+|+||||++.+..||||+||++|+|++.|+|+||+++. +.|.+++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~-~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC-HHHHHHHHC
T ss_pred EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-hHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999863 567776654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-54 Score=466.74 Aligned_cols=223 Identities=29% Similarity=0.463 Sum_probs=205.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
|+|+||+|+|++ ..+++|+||||+|++|+++||+|+||||||||+++|+|+++|++|.+.. +|++|+
T Consensus 2 I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 2 ITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEEEEEeCC-CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 899999999974 3567999999999999999999999999999999999999999875432 355799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.++.+ .+.+++..+++.+++.+++..+|.+++|.+|++|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 9999999999999999999865 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc-hHHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMEN 344 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 344 (1128)
||||||||+||+.+++.+++.+.. ..+++|+|+||||++.++.||+|++|++|+|+++|+++++++++ +.|++++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHH-HhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999986544 45689999999999999999999999999999999999999874 578887754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.7e-55 Score=471.77 Aligned_cols=225 Identities=31% Similarity=0.477 Sum_probs=207.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++||+|+|++. .+++|+||||+|++|+++||+|+||||||||+++|+|+++|++|.+.. +|+.
T Consensus 15 g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 15 GRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 469999999999853 468999999999999999999999999999999999999999875432 4567
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|+||+|+|++|++||+|||.+|.+ .+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 94 i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p 173 (255)
T d2hyda1 94 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 173 (255)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999865 5788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||||+||+++++.+++.+. ...+++|+|+||||++.++.||+|++|++|+|++.|++++++++++.|++++..
T Consensus 174 ~ililDEpts~LD~~t~~~i~~~l~-~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~~ 252 (255)
T d2hyda1 174 PILILDEATSALDLESESIIQEALD-VLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252 (255)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHH-HHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred CEEEEeCccccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999998654 344689999999999999999999999999999999999999999999888753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9e-54 Score=464.76 Aligned_cols=225 Identities=31% Similarity=0.494 Sum_probs=207.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++||+|+|+.+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|.+.. ++..
T Consensus 12 g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 12 GDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred eEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence 369999999999853 468999999999999999999999999999999999999999875432 3456
Q ss_pred EEEEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
|+||||+|++|++|+++|+.++. ..+.+++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999985 4678899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|+|||||||||+||+.+++.+++.+.. ..+++|+|+||||++.++.||+|++|++|+|+++|++++++++++.|+++++
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHH-hccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999999999986544 4468999999999999999999999999999999999999999999999876
Q ss_pred H
Q 001189 344 N 344 (1128)
Q Consensus 344 ~ 344 (1128)
.
T Consensus 250 ~ 250 (253)
T d3b60a1 250 M 250 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-53 Score=461.19 Aligned_cols=225 Identities=25% Similarity=0.402 Sum_probs=205.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++||+|+|++.+++++|+||||+|++||+++||||||||||||+++|+|+++|++|.+.. +++.
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 3599999999998666678999999999999999999999999999999999999999875421 3457
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
|+||+|+|++|++||+|||.+|.. .+.++..++.+.+++.+.+..+|+|++|.++++|.+|||||||||+|||||+++
T Consensus 90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~ 169 (251)
T d1jj7a_ 90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK 169 (251)
T ss_dssp EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence 999999999999999999999843 456777888888999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
|+|+|||||||+||+.++..+++.+..... .++|+|+||||++.++.||||++|++|+|+++|++++++++++.|++++
T Consensus 170 p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~ 249 (251)
T d1jj7a_ 170 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249 (251)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHh
Confidence 999999999999999999999987655433 4899999999999999999999999999999999999999988888775
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.9e-54 Score=461.41 Aligned_cols=223 Identities=26% Similarity=0.472 Sum_probs=205.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 186 (1128)
.|+++||+|+|++ ++++|+||||+|++|+++||+||||||||||+++|+|+++|++|.+. .+|++|
T Consensus 1 mle~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence 3799999999974 35799999999999999999999999999999999999999988643 256789
Q ss_pred EEEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|||||+|++|++||+||+.++. ..+++++.++++.+++.+++..+|++++|.+|++|.+|||||||||+|||||+++|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999874 35678888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||||+||+.+++.+++.+.. ..+|+|+|+||||++.+..||||++|++|+|+++|+++|++++++.|++++..
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKALDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred CEEEecCCccccCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHH
Confidence 99999999999999999999986544 44799999999999999999999999999999999999999999999888754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.9e-51 Score=435.35 Aligned_cols=221 Identities=21% Similarity=0.349 Sum_probs=185.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ ..||+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|+|+.+.++. |++||
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence 4999999999964 4799999999999999999999999999999999999999999999999999988864 57899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
||||+|.+|.. ||+||+.+... .+.+++.+. +.++++. .|++........+||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 99999999965 99999986542 343333221 1223333 2455555666678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|+||||||||++||+.+...|++.|+++. + ++|+|+|||+++++.. ||||++|++|+|++.|+|+|+.+++...|.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 99999999999999999999999999974 3 8999999999999988 999999999999999999999988765443
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-51 Score=433.35 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=163.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.++ .|++|||
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeee
Confidence 789999999964 379999999999999999999999999999999999999999999999999988775 4678999
Q ss_pred EcCCCccccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|||+|.+|.. ||+||+.+.... .++++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999966 999999764321 1345677777777776665544 57999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+.+|+||||||||++||+.+.+.|++.|+++. .++|+|+|||+++++.. ||||++|++|+|++.|+|+|+++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence 99999999999999999999999999999864 48999999999999988 9999999999999999999999876544
Q ss_pred h
Q 001189 973 F 973 (1128)
Q Consensus 973 ~ 973 (1128)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.2e-51 Score=430.51 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=189.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+. .+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+.++. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 799999999963 489999999999999999999999999999999999999999999999999987764 778999
Q ss_pred EcCCCccccc-cHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 824 IPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|||++.+|.. ||+||+.+. ....++++.++++..++.++. .....+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhH-----------hCChhhCCHHHhcchhhhhhhhcc
Confidence 9999999965 999999643 223456677777776654433 334467999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
|+||||||||++||+.+.+.+++.|+++. .+.|||+|||+++++.. ||||++|++|+|++.|+|+|+++++...
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~ 222 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCH
Confidence 99999999999999999999999999864 37899999999999988 9999999999999999999999876543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.5e-51 Score=433.71 Aligned_cols=220 Identities=22% Similarity=0.333 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 819 (1128)
.|+++||+++|+.+...||+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999754457999999999999999999999999999999999999999999999999997755 334577
Q ss_pred ceEEEcCCCccccc-cHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||||||+|.+|+. ||+||+.+.. ..+.+ ++.++++.+++. ........+||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-----------HVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-----------hhhhCChhhCCHHHHhHHHH
Confidence 89999999999976 9999996432 23333 345555555444 44444456899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+...|++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+|+.++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998743 8999999999999987 999999999999999999999987
Q ss_pred CCCch
Q 001189 969 EGSSF 973 (1128)
Q Consensus 969 ~~~~~ 973 (1128)
+...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
Confidence 65443
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.9e-51 Score=433.86 Aligned_cols=218 Identities=20% Similarity=0.327 Sum_probs=188.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----hh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r 818 (1128)
.|+++||+++|++ .+||+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 3899999999964 37999999999999999999999999999999999999999999999999997765444 36
Q ss_pred hceEEEcCCCccccc-cHhhccccC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++||||||+|.+|.. ||+||+.+. ...+. +++.++++.+++.++.. ....+||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHH
Confidence 789999999999976 999999643 12232 33555666665554333 334679999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...|++.|+++. + +.|||+|||+++++.. ||||++|++|+|++.|+|+|++.
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999864 3 8999999999999988 99999999999999999999998
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 230 ~P~~~~ 235 (240)
T d1g2912 230 KPANTF 235 (240)
T ss_dssp SCSBHH
T ss_pred CCCCHH
Confidence 775544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-50 Score=432.16 Aligned_cols=219 Identities=27% Similarity=0.436 Sum_probs=190.7
Q ss_pred EEEEEEEEEeCCCCC--CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~--~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++||+++|+.+.. .||+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.|+...+..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 799999999975432 5899999999999999999999999999999999999999999999999999888765 46
Q ss_pred hceEEEcCCCccccc-cHhhccccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++||||||++.+|.. ||+||+.+. ...+ ++++.++|+.+++.+...+ ...+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 789999999999976 999998631 1122 3456677777766554333 34689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...|++.|+++.+ +.|||+|||+++++.. ||||++|++|+|++.|+|+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998643 7999999999999988 99999999999999999999998
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 765443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.7e-50 Score=442.05 Aligned_cols=218 Identities=37% Similarity=0.673 Sum_probs=198.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 198 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 198 (1128)
.|.|+|++| . ++|+|+||||+|++|+++||+||||||||||+++|+|+++|++| .+.+.++|+||||++++|++
T Consensus 38 ~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 38 NVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp --CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEECCSCEEEECSSCCCCSE
T ss_pred cEEEEEcCC--C---CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCc-EEEECCEEEEEeccccccCc
Confidence 345555443 2 36899999999999999999999999999999999999999876 55678899999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+|||.|+..++..++..+++.+.+..++..+|+++++.+|++|.+|||||||||+|||||+++|+|||||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred eeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
.+++.+++.++....+++|+|+|||+++.++.||||++|++|+|++.|+++|+++..+.|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence 9999999876666667899999999999999999999999999999999999988766665544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-50 Score=445.38 Aligned_cols=210 Identities=24% Similarity=0.362 Sum_probs=192.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|.|+|+++.+ +|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 38 ~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred cEEEEEcCCCC----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence 46666655432 3799999999999999999999999999999999999999999999998 599
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
|+||+|.+|++||++|+.+.....+.+++++++.+++...+..+|.++++.+++.|.+|||||||||+|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999999999887777888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHH-HHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 001189 903 VLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~-l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||||||+||+.+++.|++. +....+++|+|+||||++.+..||||++|++|+|++.|+|+||++..
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~ 248 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 248 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC
T ss_pred hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccC
Confidence 99999999999999998876 44455689999999999999889999999999999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-49 Score=418.99 Aligned_cols=208 Identities=26% Similarity=0.370 Sum_probs=175.8
Q ss_pred EEEEEEEEEeCCCCC--CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----
Q 001189 744 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~--~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 817 (1128)
|+++||+++|+.+.. .||+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999964432 37999999999999999999999999999999999999999999999999999998775
Q ss_pred hhceEEEcCCCccccc-cHhhcccc---C---CCCCHHH----HHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDP---F---SEHSDAD----LWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 885 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~---~---~~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq 885 (1128)
|++||||||+|.+|.. ||+||+.+ + ...+.++ +.+.++.+ |+.. .......+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhh-----------chhhhhhcCChhhCCHHH
Confidence 3569999999998865 99999863 1 1223322 22333333 3322 2233446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+.+.|++.|+++. .++|+|+|||+++.+..||||++|++|+|+++|++
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999999874 37899999999998866999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-48 Score=425.19 Aligned_cols=220 Identities=25% Similarity=0.347 Sum_probs=187.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh--------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-------- 814 (1128)
.|+++||+++|+. .+||+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...++
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 4899999999964 379999999999999999999999999999999999999999999999999975543
Q ss_pred -----HHhhhceEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 815 -----MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 815 -----~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
...|++||||||+|.+|.. ||.+|+.+. ...+. +.+.++++.+++.+... .....+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGGG
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhh----------ccCccc
Confidence 2467889999999999975 999998632 22232 33555556655544321 122357
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++|||||+.+|+||||||||++||+.+.+.|++.|+++. +++|||+||||++++.. ||||+||++|+|++
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 47999999999999988 99999999999999
Q ss_pred ecChhHHhhcCCCchH
Q 001189 959 YDTPEELLSNEGSSFS 974 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~ 974 (1128)
.|+|+|+++++...|.
T Consensus 230 ~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EECHHHHHHSCCSHHH
T ss_pred EcCHHHHHhCCCCHHH
Confidence 9999999988765554
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-47 Score=410.70 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=189.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+.. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+ .+..+|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhE
Confidence 569999999999653 79999999999999999999999999999999999999999999999999987 456889999
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||||++.+|.. |++||+.++. .....++.+.++. .++. .+++........+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHH--HCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHh--CCCHHHHhhhhhhCCHHHHHHHHHHHHHhc
Confidence 999999998866 9999996532 2344544443332 2222 245555566667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
+|+||||||||+|||+.+.+.|++.|++.. +|+|||++||+++++.. ||||++|++|+|++.|+|+++.++..
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence 999999999999999999999999998865 57999999999999998 99999999999999999999987543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.5e-48 Score=414.78 Aligned_cols=218 Identities=22% Similarity=0.384 Sum_probs=183.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh-ce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 821 (1128)
.|+++|++++|++ ..||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+.+..++ .|
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 4899999999964 37999999999999999999999999999999999999999999999999999988877644 49
Q ss_pred EEEcCCCccccc-cHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||++.+|.. |++||+.+.. ....+...+.++.+ +..+ .++.........+||||||||++|||||+.+
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999976 9999986432 11222222222221 1111 1233334445568999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++|||||||+|||+.+.+.|++.|+++. +|+|||+|||+++++.. ||||+||++|+|++.|+|+|+.++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999865 57999999999999988 999999999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.3e-47 Score=412.34 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh-ce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 821 (1128)
-|+++||+++|++. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...++.+.++ .|
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 38999999999653 7999999999999999999999999999999999999999999999999999999988765 49
Q ss_pred EEEcCCCccccc-cHhhccccCCC----------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~----------------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
+|+||+|.+|.. ||+||+.+... ..+++..+ .+.+.++. .|++........+||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEF--LKLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHH--TTCGGGTTSBGGGSCHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHH-----HHHHHHHh--cCcchhccCchhhCCcH
Confidence 999999998865 99999954210 01111111 11222332 24555555556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
||||++|||||+.+|++|||||||+|||+.+.+.|++.|+++. +|+|||+|||+++++.. ||||+||++|+|++.|+|
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecH
Confidence 9999999999999999999999999999999999999998864 57999999999999987 999999999999999999
Q ss_pred hHHhh
Q 001189 963 EELLS 967 (1128)
Q Consensus 963 ~~l~~ 967 (1128)
+|+.+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-46 Score=399.24 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=179.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
+++ ++.++|+.- .+ ||||+++ ||++||+||||||||||+++|.|+++|++|+|.++|.|+.++++. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 566 578888642 24 8999995 689999999999999999999999999999999999999998864 788999
Q ss_pred EcCCCccccc-cHhhccccCC-CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS-EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~-~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|||++.+|+. ||+||+.+.- ..+.. ++.++++.+ |+.........+||||||||++|||||+.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~-----------gl~~~~~~~~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhc-----------CcHhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999975 9999997643 23333 334444443 44444555567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+|+||||||||++||+.+...+++.|+++.+ +.|||+|||+++++.. ||||++|++|+|++.|+|+|+++.++..
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~ 221 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSS
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHH
Confidence 9999999999999999999999999998643 7999999999999988 9999999999999999999999766543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-45 Score=390.19 Aligned_cols=204 Identities=25% Similarity=0.343 Sum_probs=170.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
..|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+++||
T Consensus 5 ~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred CeEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEE
Confidence 3599999999996 357999999999999999999999999999999999999999876432 233599
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||||+|.+| +.||+||+.|+.. .+. ++..++++.+++.+..+..| .+|||||||||+||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHhh
Confidence 999999998 6799999998742 333 44556677777765554444 5899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+.+|+||||||||++|||.+.+.+++.+.+... .|.|+|+|||+++++.. ||||++|++|+|+++|+++++.+++
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999987665433 49999999999999765 9999999999999999999997663
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=391.88 Aligned_cols=201 Identities=30% Similarity=0.434 Sum_probs=146.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.||||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeee
Confidence 68999999996 357999999999999999999999999999999999999999876432 24469999
Q ss_pred ecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
||+|.+| +.||+|||.|+... + .++..++++..++.+..+..| .+|||||||||+|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 9999997 67999999987432 1 245667778887776555544 589999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
.+|+++||||||++||+.+.+.+++.+.+.. ..|+|+|+|||+++++.. ||||++|++|+|++.|+++++.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999998766543 459999999999998766 999999999999999999998765
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.9e-45 Score=390.84 Aligned_cols=205 Identities=26% Similarity=0.369 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
.|+++|++++|+. ++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 4899999999974 3457899999999999999999999999999999999999999875421 24
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++||||+|+|.|| +.||+|||.|+.. .+. +++.++++.++|.+..+..| .+|||||||||+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHH
Confidence 5699999999998 5699999998732 232 45677788888876555554 589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+...+++.+..... .|.|+|+|||+++++. .||||++|++|+|++.|+++++.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999986655433 4899999999999875 599999999999999999999986
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
++
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-45 Score=387.78 Aligned_cols=201 Identities=28% Similarity=0.394 Sum_probs=173.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
|+++|++++|+. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.||||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 789999999962 4899999999999999999999999999999999999999876432 23369999
Q ss_pred ecCCCCC-cccHHHHHhcCC----CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 190 PQVSWIF-NATVRDNILFGS----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+|++.+| +.||+|||.|+. ..+.+++.++++..++.+..+.. ..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred ccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCC-----------hhhCCHHHhcchhhhhhhhccC
Confidence 9999998 579999998762 23567788888887776544433 3589999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++|||||||++||+.+.+.+++.+.+.. ..|.|+|+|||+++.+.. ||||++|++|+|+++|+++++.+++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999998766543 358999999999998765 9999999999999999999997653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.7e-45 Score=389.79 Aligned_cols=203 Identities=25% Similarity=0.395 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 589999999996 357999999999999999999999999999999999999999875421 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+++||||+|+|.+| ..||+||+.++. ..+. +++.++++.+++.+..+..| .+|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHH
Confidence 35699999999998 569999998862 2232 45667788888876544444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+|||||+.+|+||||||||++||+.+...+++.+.+...+ |.|+|+|||+++++.. ||||++|++|+|++.|+++++.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999876554443 9999999999999765 8999999999999999999987
Q ss_pred hcc
Q 001189 333 NNG 335 (1128)
Q Consensus 333 ~~~ 335 (1128)
.++
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred hCC
Confidence 653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-45 Score=389.03 Aligned_cols=204 Identities=26% Similarity=0.407 Sum_probs=173.1
Q ss_pred EEEEeEEEEeCCCCCC-CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~-~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
|+++|++++|+.+... .+|+||||+|++||+++|+||||||||||+++|+|+.+|++|.+.. .|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 7899999999754322 4799999999999999999999999999999999999999875432 23
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcC-----CCCC--HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFG-----SAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g-----~~~~--~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++||||+|++.+| ..||+|||.++ .+.. .+++.++++.++|.+..+..| .+|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 4699999999987 56999999875 2222 245677788888765444433 589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+++.+++.+.....+ |.|+|+|||++.++.. ||||++|++|+|++.|+++++.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999876654444 9999999999999875 89999999999999999999875
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-44 Score=382.82 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=161.7
Q ss_pred EEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 120 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
|+++|++++|+.+.. ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999974322 13799999999999999999999999999999999999999876432 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC------CCCH-H---HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS------AFEP-A---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~------~~~~-~---~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
+.+||||+|+|.++ +.||+||+.++. ..+. + ++.+.++..+|.+.+ ......+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhh----------hcCChhhCCHHHH
Confidence 23599999999987 679999998742 1222 2 233344444443321 1122358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecCh
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 328 (1128)
|||+|||||+.+|++||||||||+||+.+++.+++.+.+... .|+|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999987665443 48999999999998888999999999999998853
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-42 Score=377.28 Aligned_cols=203 Identities=28% Similarity=0.430 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999996 357999999999999999999999999999999999999999875421
Q ss_pred --------ecCcEEEEecCCCCC-cccHHHHHhcC----CCCCH----HHHHHHHHHhCcHHHH-hcCCCCCcccccCCC
Q 001189 182 --------IRGTVAYVPQVSWIF-NATVRDNILFG----SAFEP----ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERG 243 (1128)
Q Consensus 182 --------~~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~~----~~~~~~~~~~~l~~~~-~~l~~g~~t~vg~~g 243 (1128)
.+.+||||+|+|.++ +.||+|||.++ ...+. ++..++++.+++.+.. +..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------
Confidence 224599999999987 57999999875 12232 4556677778886644 3334
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
.+|||||||||+|||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+||||++++.. ||||++|++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4799999999999999999999999999999999999999998766555679999999999999775 999999999999
Q ss_pred eeecChhHHhhcc
Q 001189 323 KEEGTFEDLSNNG 335 (1128)
Q Consensus 323 ~~~g~~~~l~~~~ 335 (1128)
+++|+++++..++
T Consensus 228 v~~g~~~ev~~~P 240 (258)
T d1b0ua_ 228 EEEGDPEQVFGNP 240 (258)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEEcCHHHHHhCC
Confidence 9999999998763
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-42 Score=371.67 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
..++++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 3689999999996 357999999999999999999999999999999999999999876432 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC--CCHHHHHHHHHH-hCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA--FEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~--~~~~~~~~~~~~-~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
.|+|+||++.+| +.||+||+.++.. .+.+...+.++. ..+...+... ......+|||||||||+|||||
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHHHHHHH
T ss_pred cccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHH-------HhCchhhCCHHHHHHHHHHHHH
Confidence 499999999998 4699999987631 122222222211 1111112211 2234468999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++|||||||++|||.+.+++++.+.+...+|+|+|++||+++++. .||||++|++|+|+++|+++++.+++
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence 9999999999999999999999999976665567999999999998875 59999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-42 Score=373.42 Aligned_cols=201 Identities=20% Similarity=0.354 Sum_probs=166.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. .++|+||||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 5899999999963 57999999999999999999999999999999999999999876432 1224
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC-----------------CHH---HHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAF-----------------EPA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~-----------------~~~---~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~ 244 (1128)
|+|+||+|.+| +.||+||+.++... ..+ +..++++..++.+.. .....
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-----------cCchh
Confidence 99999999887 67999999886311 111 222333334433322 23346
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.....+|.|+|+|||+++++. .||||++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE
Confidence 89999999999999999999999999999999999999999877665567999999999999975 58999999999999
Q ss_pred eecChhHHhh
Q 001189 324 EEGTFEDLSN 333 (1128)
Q Consensus 324 ~~g~~~~l~~ 333 (1128)
++|+++|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999988654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-42 Score=367.95 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=179.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++| +|+||||+|++||++||+||||||||||+++|.|++ |++|+|.++|.++...+...++...+|
T Consensus 4 l~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 7899997654 699999999999999999999999999999999976 689999999999999999999999999
Q ss_pred EcCCCc-cccccHhhccccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc---
Q 001189 824 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR--- 897 (1128)
Q Consensus 824 v~Q~~~-lf~~Tv~~nl~~~~~--~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~--- 897 (1128)
++|+.. .|..++.+++..+.. ...+.+.++++.. +++..++....+||||||||++|||||++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred eeccccCCccccHHHHhhhccchhhHHHHHHHHHHhc-----------CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCc
Confidence 999986 456688888764322 2344455555554 34445555567899999999999999997
Q ss_pred ----CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 898 ----RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 898 ----~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+|+||||||||++||+.+...+++.|+++. +|+|||+|||+++++.. ||||++|++|+|++.|+|+|++.+
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 679999999999999999999999999864 58999999999999887 999999999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-42 Score=367.13 Aligned_cols=202 Identities=25% Similarity=0.405 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
+|.++|++++|+ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 2 aI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEe
Confidence 589999999996 368999999999999999999999999999999999999999875432 245799
Q ss_pred EEecCCCCC-cccHHHHHhcCC---CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||||++.+| +.|++||+.|.. ..+.. .++++++..++.+..+ ....+||||||||++||||
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-----------hhhhhCCHHHHHHHHHHHH
Confidence 999999887 679999997542 12232 3444555555554433 3346899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||||++|++|+|++.|+++++.++
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999988665555579999999999999875 899999999999999999998643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.8e-41 Score=356.04 Aligned_cols=198 Identities=23% Similarity=0.378 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
+++ ++.++|.. ..+ ||||++. +++++|+||||||||||+++|+|+++|++|.+.. .+++||||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 456 46777752 234 7999995 6899999999999999999999999999875432 23469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC-CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 190 PQVSWIF-NATVRDNILFGSA-FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~-~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
||++.+| +.||+|||.|+.. .+. ++..++++.+++.+..+.. ..+|||||||||+|||||+.+
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~-----------~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTTC
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCC-----------hhhCCHHHHHHHHHHHHHhcc
Confidence 9999998 5799999999842 222 3456666667665544443 368999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+++||||||++||+.+...+++.+..... .|.|+|+|||+++.+.. ||||++|++|++++.|+++++.+..
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 999999999999999999999987655443 38999999999998765 9999999999999999999997653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.7e-39 Score=336.27 Aligned_cols=188 Identities=23% Similarity=0.400 Sum_probs=154.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEE
Confidence 489999999994 269999999999999999999999999999999999999999999999998854 678899
Q ss_pred EEcCCCccccc-cHhhcccc----C-CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 823 IIPQSPVLFSG-TVRFNLDP----F-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~----~-~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|+||++.++.. |+.+|+.. + ...+++++.++++..++. +++..+ .+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cccccc----CcCCCcHHHHHHHHHHHh
Confidence 99999988765 99998853 2 245667777777664432 122222 469999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCc--EEEEeecCchhhhhcCEEEEEeC
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~--Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
++|+||||||||++||+.+++.+++.|.+..+++ ++|..+|+ +.-||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence 9999999999999999999999999998876533 33333333 345999988753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-37 Score=330.40 Aligned_cols=198 Identities=19% Similarity=0.279 Sum_probs=162.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------cCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 186 (1128)
.++++|++++ .+|++|||+|++||+++|+||||||||||+++|+|+. |++|.+... +...
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccC-------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 4788998643 4799999999999999999999999999999999976 566654321 1237
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc-
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS- 262 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~- 262 (1128)
+|++|+... +..++.+++.++.. ...+...++++..++.+. ++....+|||||||||+|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhH-----------hCcChhhcCHHHHHHHHHHHHHHhh
Confidence 999998765 68899999987643 234566677777666543 334556899999999999999997
Q ss_pred ------CCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 263 ------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 263 ------~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+|+|+||||||++||+.....+++.+.....+|+|+|++||+++++ +.||||++|++|++++.|+++++.+++
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 7799999999999999999999876555556799999999999875 568999999999999999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.2e-36 Score=312.26 Aligned_cols=182 Identities=22% Similarity=0.386 Sum_probs=145.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 191 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 191 (1128)
.|+++|++|+|+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+++++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEee
Confidence 489999999995 47999999999999999999999999999999999999999876532 3557999999
Q ss_pred CCCCC-cccHHHHHhc-----CCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 192 VSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 192 ~~~l~-~~Tv~eni~~-----g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
++.++ ..|+.||+.+ +...+.+++.++++...+.+ +.++..+||||||||++|||||+.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc------------cccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 99886 6799999863 44556666666655544321 122335799999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeC
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
++||||||++||+.+++.+++.+.....+ +.++|..+|+ +..||++.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence 99999999999999999999877654333 4444444444 457999988854
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=1.2e-16 Score=176.34 Aligned_cols=314 Identities=12% Similarity=0.115 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 407 FKVLSRYKDALGGL-WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWL 483 (1128)
Q Consensus 407 ~~~~~~y~~~~g~~-~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 483 (1128)
|++++++++..... +.+++.+++.++...+....++.++...|......... .++..+++++.++..++.+++.+..
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 56666666544322 33444455556666677777788887777643322222 2223455566667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
...+.+...+++.++++++++.|+.+|+++++|++++|+++|++.+...+.......+..+..++..++.+....+...+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred hhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchh
Confidence 99999999999999999999999999999999999999999999998888777777777766666666666666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
+++..+++.+.......+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..+...+..........
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 44444444444444445555555555556667788899999999999999999999988888777776665555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001189 644 WLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 721 (1128)
Q Consensus 644 wl~~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~ 721 (1128)
+......++..+...++..+... ..+.. ..+.+...+.+...+..++..+............+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~i-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcccchhhhhhhhhHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444333333322222222111 11221 133444455666677778888888888899999999999999998
Q ss_pred CCCC
Q 001189 722 PSEA 725 (1128)
Q Consensus 722 ~~e~ 725 (1128)
|+|+
T Consensus 316 ~~E~ 319 (319)
T d3b60a2 316 EQEK 319 (319)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8763
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.72 E-value=8.1e-16 Score=170.21 Aligned_cols=297 Identities=11% Similarity=0.143 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-C---hhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G---PLFYN-----TIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
.+++.+++.++...+....++.++...|....... . ...+. ..+.++.+...++.+.+.++....+.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (323)
T d2hyda2 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILY 94 (323)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444444555555666667777776654322111 1 11111 112233344556667778888888899999
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
+++.++++++++.|+.||+++++|++++|+++|++.+...+...+...+..+..++..++.+..+++...++.++++++.
T Consensus 95 ~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~ 174 (323)
T d2hyda2 95 DIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFY 174 (323)
T ss_dssp HHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHH
T ss_pred HHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988766555555555556666666666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
+.....+.+..++..+......+...+.+.|.++|+++||+|+.++++.+++.+..+...+..........+.......+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 254 (323)
T d2hyda2 175 ILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhcccccccc
Confidence 55555666666666667777778889999999999999999999998888877776666655544443333333333332
Q ss_pred HH---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001189 653 GG---LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 724 (1128)
Q Consensus 653 ~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e 724 (1128)
.. +++...+.+.+.. +..+ .+.+...+.+...+..++..+............+.+|+.+++|.++|
T Consensus 255 ~~~~~~~~l~~~~~~~~~-g~~s-----~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 255 TDIGPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred chhhHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 22 2222222222222 2221 22333344555666777778888888889999999999999976543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=6.4e-18 Score=172.28 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=105.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+++|+||||||||||++.|+|+++|+.|.+.++|.+....+...........++.+.++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh---------
Confidence 68999999999999999999999999999999987654433211111122222333333222222111100
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC--CHHHHHHHHHHHHHHcCCc
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV--DVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l--D~~t~~~i~~~l~~~~~~~ 930 (1128)
.+.+... ..+|+|++++.++++++.++|++|++|||+... +.+....+.+.+++ .++
T Consensus 73 ---------------~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 73 ---------------YGVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ---------------EEECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ---------------hhcCcch----hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc--CCC
Confidence 0111111 137899999999999999999999999986543 33333334444432 468
Q ss_pred EEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
|+|+++|+.+....||++..+.+|++++.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 9999999988777799999999999998753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.45 E-value=2.9e-15 Score=152.19 Aligned_cols=146 Identities=14% Similarity=0.040 Sum_probs=94.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeec-------CcEEEEe-----cCCCCCcccHHHHHhcCCCCCHHHHHH
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------GTVAYVP-----QVSWIFNATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------~~i~~v~-----Q~~~l~~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
+++|+||||||||||++.|+|+++|..|+..... .+.++.. +...+...+...+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--------
Confidence 5899999999999999999999988766543211 0111111 1111111111111111100
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCc--CHHHHHHHHHHHHccccCC
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL--DAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~L--D~~~~~~i~~~~~~~~~~~ 295 (1128)
.+......+|+|+++|.++++++..+|+++++|||.... +......+.+. + ...+
T Consensus 74 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-l--~~~~ 130 (178)
T d1ye8a1 74 --------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-M--HDPN 130 (178)
T ss_dssp --------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-H--TCTT
T ss_pred --------------------hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHH-h--ccCC
Confidence 001111258999999999999999999999999986544 33333333322 1 2247
Q ss_pred cEEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 296 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 296 ~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
.|+|+++|+....+.+|++..+.+|++++-+
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 8999999999888889999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=2.4e-11 Score=139.85 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHHHh----ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE
Q 001189 879 ENFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 879 ~~LSgGqrqrl~lAral----l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
..||||||.+++||-.+ ..++++++||||+++||+.....+.+.|++.. .+.-+|+|||+...+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 35799999998776443 45788999999999999999999999998764 345699999999999999998855
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=7.3e-10 Score=121.86 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=65.3
Q ss_pred CCChhHHHHHHHHHHh----ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE--eC
Q 001189 880 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--DS 953 (1128)
Q Consensus 880 ~LSgGqrqrl~lAral----l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl--~~ 953 (1128)
.+|+|||+.+.++..+ ..+++++++|||-++|+|...+.+.+.|++..++.=+|++||+...+..+|+++.+ ++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeC
Confidence 5899999998776653 34678999999999999999999999999988888899999999999999999764 45
Q ss_pred C
Q 001189 954 G 954 (1128)
Q Consensus 954 G 954 (1128)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=1.8e-08 Score=110.40 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEE--E
Q 001189 244 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL--V 317 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal----~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~--l 317 (1128)
..+|+|||+...++..+ ...+.++++|||-++|+|...+.+.+.+. ...++.-+|++||++.+++.+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~-~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLK-ENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHH-HHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHH-HhccCCEEEEEECCHHHHHhcccEEEEEE
Confidence 46899999998776653 35678999999999999999999887554 33456789999999999999999966 4
Q ss_pred eCC
Q 001189 318 HEG 320 (1128)
Q Consensus 318 ~~G 320 (1128)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred eCC
Confidence 566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.5e-07 Score=107.33 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE
Q 001189 244 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 317 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal----~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 317 (1128)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+.+......+.-+|+|||++.++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 46899999998876443 467889999999999999999988876544333456799999999999999998866
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.28 E-value=0.00047 Score=70.88 Aligned_cols=48 Identities=6% Similarity=0.092 Sum_probs=36.5
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~ 309 (1128)
.+..++|+||+..+=|+.....+...++... ..+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 4556999999999999998887776665532 34678999999865543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00029 Score=73.05 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=32.9
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cC-CcEEEEEccCccc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS-GKTRVLVTNQLHF 307 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~ 307 (1128)
.+..++|+||+..+=++.....+...++... .+ +..+|++||..+.
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 3456999999999999998887766555432 23 4577888886554
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.14 E-value=0.0015 Score=66.94 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=33.8
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTII 943 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~ 943 (1128)
.+..++|+||...|=|+..-..+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 4557999999999999966655544443322 3688999999866544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=2e-05 Score=77.84 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 808 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~ 808 (1128)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 488999999999999999999998777766655443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0037 Score=64.44 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=32.1
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHH-HHHHHc--CCcEEEEeecCchhh
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQK-TIREEF--KSCTMLIIAHRLNTI 942 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~-~l~~~~--~~~Tvi~vtH~l~~~ 942 (1128)
..+..++|+||+-.|=|+..-..+-. .+..+. .++.++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 34456999999999999866655544 444442 346788888876554
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.72 E-value=0.0036 Score=66.42 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 104 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~ 104 (1128)
.++++|.+.+..|.+|+|.+++++.++..+..|+..++..+..+.++.+|++||.++|++|+
T Consensus 261 ~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34566788888999999999999999999999999999999999999999999999998754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.63 E-value=0.002 Score=67.98 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=28.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
+.|+++..-+.||+.+.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45666655589999999999999999999877663
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.26 E-value=0.0011 Score=67.58 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~ 803 (1128)
+|++.+++|+||+|||||+|.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999988777677764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.25 E-value=0.00084 Score=66.47 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
|.+++|+||+|||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988775
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.00071 Score=65.48 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999998766543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.00015 Score=72.40 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=29.3
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
.+++.++++.+| +++|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467888888776 9999999999999999999643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.012 Score=61.60 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHh
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~ 169 (1128)
.+|+++.|.|++|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.04 E-value=0.0015 Score=63.50 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.|+++.|+|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998865
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.012 Score=61.45 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.7
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.||+.+.|.|++|+|||||+..|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999976653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.0019 Score=65.77 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
+|+.++++|+||+|||||+|.|.|....
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh
Confidence 6999999999999999999999986543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.94 E-value=0.0016 Score=64.38 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
|.++.|+||+|||||||.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.025 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.617 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
|=.++++|++|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.92 E-value=0.0014 Score=63.73 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
.+++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999999888777653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.0027 Score=62.52 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.87 E-value=0.0089 Score=60.27 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=17.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
...++++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999866665443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0018 Score=62.42 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
+++|+|++|||||||++.|+..+... | .+++++-.++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~-g------~~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR-G------IRPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-T------CCEEEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC-C------CeEEEecccc
Confidence 68999999999999999999866432 2 2466666654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.86 E-value=0.0019 Score=62.67 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.|+.+.|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.00022 Score=71.11 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.7
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+++.++++.+| ++.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888776 88899999999999999997544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.80 E-value=0.0084 Score=62.96 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.6
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+-|+++.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 46777665689999999999999999999877763
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.70 E-value=0.014 Score=59.57 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.7
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+++|..+.|.|++|+||||+..-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999666543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.02 Score=55.76 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++-+.+.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.65 E-value=0.0037 Score=67.60 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=31.7
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
++.|.-+.|+|++||||||++++|++.++|+.=-|.|.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 44556689999999999999999999998876666663
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.62 E-value=0.0025 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.61 E-value=0.031 Score=56.98 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+++.|.|++|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999999777654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.57 E-value=0.0011 Score=67.77 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
+|.+..++|+||+|||||+|.|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 48889999999999999999999987777777753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.56 E-value=0.003 Score=61.08 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
|+|-.++|.|++||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.50 E-value=0.0027 Score=61.85 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
..++|+|++|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.48 E-value=0.0034 Score=60.82 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|-+|.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999655
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.45 E-value=0.0027 Score=63.21 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.42 E-value=0.0099 Score=66.21 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=32.0
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
|..+|=++|+|+++.|.. |.++.....++- ..|..|+.+-|=-+.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa---~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQAS---LTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEECCSSSH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHHHHH---hcCCeEEEEeccCchH
Confidence 445666799999999987 566655544443 3588899998854443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.0033 Score=60.71 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
..+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.011 Score=60.86 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=34.0
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+.+++|+||+=. |.......+.+.+.+....+.+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 457999999854 77888888888887654566789999987654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.38 E-value=0.0019 Score=66.00 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+|+.++++|+||+|||||+|.|.|...
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH
Confidence 688999999999999999999999754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.042 Score=57.00 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++..-+.+.||+|+|||++++.|+..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3345578999999999999999998763
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0039 Score=60.10 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.+.++.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.30 E-value=0.0044 Score=59.88 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++|-.|.|.||+||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.27 E-value=0.0028 Score=63.04 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.25 E-value=0.0033 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|+|+|++|||||||.+.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.23 E-value=0.044 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++.++++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999866666554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.004 Score=62.83 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.|.+++|+||||||||||.+.|+-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999987654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.21 E-value=0.003 Score=61.13 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
.+++|+|.+|||||||++.|+..+... | .+++.+-.++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~-g------~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE-G------WRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-T------CCEEEEECCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC-C------CeEEEEEecc
Confidence 478999999999999999998877543 2 2467666554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.20 E-value=0.0041 Score=60.03 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
..++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.18 E-value=0.004 Score=61.47 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|||.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999986654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.15 E-value=0.0044 Score=58.58 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=19.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhcC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++.|+|++|||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999987653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.11 E-value=0.0044 Score=61.13 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.10 E-value=0.0051 Score=59.31 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
..+|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998874
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.05 E-value=0.0051 Score=58.14 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
+.|.|+|++||||||+.+.|..- ..|.+.++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEec
Confidence 46789999999999999987643 23555554
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.02 E-value=0.0044 Score=59.57 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.++.|+|++||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0035 Score=60.88 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
.+.|+||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999999987554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.97 E-value=0.0048 Score=60.10 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=24.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.+|+|.|++||||||+.+.|...+.....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999876654433
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0041 Score=61.38 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|.++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.027 Score=58.80 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.4
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+++..-+-+.||+|+|||+|++++++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44555688999999999999999998763
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.95 E-value=0.0063 Score=60.13 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
|+|-+++|+||.||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998544
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.90 E-value=0.019 Score=63.84 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=68.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcH
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 225 (1128)
.++-++.|.||+||||||++..++..++.... +|--+- +|.=+. .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~-------~i~tiE-dPiE~~------------~--------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER-------NILTVE-DPIEFD------------I--------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS-------CEEEEE-SSCCSC------------C---------------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCc-------eEEEec-cCcccc------------c---------------
Confidence 35668999999999999999999997753221 222221 221010 0
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCc
Q 001189 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305 (1128)
Q Consensus 226 ~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 305 (1128)
++-..+.+.+ ..|+----+|..+|=++||+++..|.. |+++.+..++.. ..|..|+-.-|--
T Consensus 201 ------~~~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa----~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS----LTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH----HTTCEEEEEECCS
T ss_pred ------CCCCeeeecC-----CcCCCHHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH----hcCCeEEEEeccC
Confidence 0000000100 001112345777888999999999998 778777666543 3567888888876
Q ss_pred cchhcCCE
Q 001189 306 HFLSQVDR 313 (1128)
Q Consensus 306 ~~l~~~d~ 313 (1128)
+-..-.+|
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred chHhhhhh
Confidence 65443333
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.87 E-value=0.0042 Score=61.07 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.|||+|++++|||||++.|+|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.86 E-value=0.0063 Score=58.96 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0069 Score=61.01 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.|..+.|+||||+|||||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998876643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0059 Score=57.89 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.84 E-value=0.0053 Score=60.08 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.82 E-value=0.0058 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|++||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.79 E-value=0.007 Score=58.81 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++|.|++||||||+++.|.-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999986554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0063 Score=58.11 Aligned_cols=24 Identities=54% Similarity=0.594 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
|=+|+|+|++|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447999999999999999999975
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.70 E-value=0.0066 Score=58.21 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=25.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
..+.|+||+||||||+.+.|...+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3688999999999999999998763 3444443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.68 E-value=0.0047 Score=66.81 Aligned_cols=31 Identities=39% Similarity=0.718 Sum_probs=26.7
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
++.|.-+.|+|++|||||||+++|+++++|.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3445568999999999999999999999874
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.043 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
-.++++|||||+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999866665554
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.57 E-value=0.022 Score=59.48 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
|||+|..|+|||||+..|+... ....|+|. +|..+.+..+.+..+.+++-+
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~ 57 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRT 57 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEe
Confidence 7999999999999999885322 22456553 566666777777766665433
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0083 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
|++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.0056 Score=59.91 Aligned_cols=21 Identities=52% Similarity=0.789 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~ 794 (1128)
|||+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0084 Score=58.24 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.|+|+|.+|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.50 E-value=0.0072 Score=58.06 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|+||+||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999997544
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.49 E-value=3 Score=42.33 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001189 680 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 719 (1128)
Q Consensus 680 ~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~ 719 (1128)
++|.++++.........++............+..-..++.
T Consensus 271 t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~ 310 (319)
T d3b60a2 271 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLF 310 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333343344433
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0083 Score=60.39 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.0087 Score=58.37 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.044 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+..++++|||||+||||.+-=|+..
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999987655543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.41 E-value=0.0067 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.-+++|||++|+|||||++.|.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999997643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0084 Score=58.88 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
..++|+||||+||+||++.|+...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986553
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.33 E-value=0.0097 Score=56.25 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|.|+|++|+|||||++.|.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.01 Score=57.47 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.|+|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.0095 Score=56.35 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.|.|+||+||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.29 E-value=0.01 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.24 E-value=0.009 Score=62.35 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.|+|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.23 E-value=0.071 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.++.++||+|+||||.+-=|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999877765543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.0056 Score=59.68 Aligned_cols=24 Identities=50% Similarity=0.560 Sum_probs=21.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
=+|+|+|++++|||||++.|++..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.21 E-value=0.01 Score=58.72 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+..+++|+||+||||||+.+.|+-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.20 E-value=0.0092 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.|+|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999963
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=0.0084 Score=59.23 Aligned_cols=23 Identities=35% Similarity=0.797 Sum_probs=20.7
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++|+||+||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987664
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.01 Score=59.69 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=31.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 195 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 195 (1128)
++||.|++||||||+.+.|.-.+... ........+.+++++.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~--~~~~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN--EVDYRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG--GSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh--ccccCCCceEEEeccccc
Confidence 68999999999999999987765321 111122357888998764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.096 Score=54.42 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++..-+.+.||+|+|||+|++++++++.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44455588999999999999999999873
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.0064 Score=59.84 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|-+|-|+|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999987553
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.13 E-value=0.013 Score=57.69 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++|=++.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998544
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.011 Score=58.82 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.07 E-value=0.011 Score=55.84 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.015 Score=61.91 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=34.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccH
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 200 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv 200 (1128)
++||.|++||||||+.+.|...+.-..+ ..++..+++|.+......
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----CCceEEEeeeeeECCchH
Confidence 7899999999999999998876642211 124889999988764433
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.05 E-value=0.011 Score=57.78 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++||+|.+|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.03 E-value=0.011 Score=60.24 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=27.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
+++|+|+.|||||||++.|+.... .+ +.++.+..+|.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~--~~------~~~~ivn~d~~ 38 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE--DN------YKVAYVNLDTG 38 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--TT------SCEEEEECCSS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh--hC------CeEEEEecCcc
Confidence 689999999999999999986432 11 23566666553
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.02 E-value=0.012 Score=60.20 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.97 E-value=0.012 Score=56.05 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++|||.+|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.96 E-value=0.013 Score=57.13 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|+|+|.+|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.012 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.93 E-value=0.0083 Score=58.84 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-|||+|++++|||||++.|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998853
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.86 E-value=0.015 Score=58.58 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDG 806 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~--~G~I~i~g 806 (1128)
++|-+|-|.|.+||||||+.+.|...+... --.+.+||
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg 61 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 61 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence 568899999999999999999997543211 13466776
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.013 Score=57.78 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
|.|+||+||||+||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.014 Score=56.57 Aligned_cols=22 Identities=41% Similarity=0.822 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.017 Score=57.27 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.5
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+++|+++.|.|++|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999998777543
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.014 Score=57.17 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
..+.|+||||+||+||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999988854
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.0045 Score=59.13 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+|+|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.78 E-value=0.011 Score=57.31 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.-+++|||++|+|||||++.|.|...
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999988653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.73 E-value=0.011 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
|||+|++|+|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.69 E-value=0.015 Score=57.46 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
+..+|.|+||.||||||+.+.|+.-+ |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 34578999999999999999998654 445544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.65 E-value=0.013 Score=57.96 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=24.9
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++++.++.|+||+||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999999998765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.61 E-value=0.015 Score=57.62 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++|+||+|||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.015 Score=57.91 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.036 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+++|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.013 Score=58.14 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+-.+++|+||.||||||+.+.|+-.+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998766
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.49 E-value=0.017 Score=56.18 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997655
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.44 E-value=0.023 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+|+|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999997743
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.43 E-value=0.019 Score=55.87 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
++-+++.++|++||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999998854
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.43 E-value=0.019 Score=56.00 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+||+|+..+|||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.012 Score=63.64 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.-+|||.||.|||||||++.|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999876643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.38 E-value=0.017 Score=60.10 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.33 E-value=0.018 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.022 Score=58.50 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 309 (1128)
+..++++||+=. |.......+.. .+.....+..+|++|++.+-+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~-~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRR-TMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHH-HHHHSTTTEEEEEEESCSCSSC
T ss_pred CceEEEeccccc-cccccchhhhc-ccccccccccceeeeccccchh
Confidence 456999999854 66666555543 3333334456799999987553
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.023 Score=56.25 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=23.7
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++|+.+-|.||+|+|||||..-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999977764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.25 E-value=0.018 Score=56.18 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~ 794 (1128)
|||+|+..||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.24 E-value=0.019 Score=56.78 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
|.|+||+|||||||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.012 Score=57.31 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.|+|+|++++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.013 Score=62.46 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 589999999999999999987764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.20 E-value=0.016 Score=57.07 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++.|.||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.16 E-value=0.026 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++|+|+.|+|||||++.|.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999998653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.15 E-value=0.022 Score=63.30 Aligned_cols=28 Identities=50% Similarity=0.704 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.|||+|++|+|||||+|+|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3899999999999999999996543334
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.10 E-value=0.019 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999997544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.06 E-value=0.022 Score=55.66 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.02 E-value=0.0089 Score=56.95 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|++|+|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.023 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.92 E-value=0.023 Score=56.36 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.|.++|++||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999997654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.88 E-value=0.022 Score=56.04 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~ 169 (1128)
++||+|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.027 Score=55.64 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
-.++.|+||.||||||+.+.|+.-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4469999999999999999998766 445554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.81 E-value=0.024 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|.+||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.81 E-value=0.022 Score=56.03 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.74 E-value=0.023 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.73 E-value=0.025 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
=+++|+|.+|||||||++.|.+.
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999884
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.72 E-value=0.024 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++++|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998655
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.72 E-value=0.025 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998665
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.68 E-value=0.027 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|+||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.67 E-value=0.025 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.431 Sum_probs=20.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
=+|.|+|..|||||||++.|.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998873
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.59 E-value=0.02 Score=59.31 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
-+.+.||+|||||||.+.|++++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.051 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.51 E-value=0.022 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.028 Score=54.61 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.39 E-value=0.031 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|.|+||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.37 E-value=0.025 Score=55.83 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.+.+|.|+||.||||||+.+.|..-+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.032 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|.|+||.||||||..+.|..-+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.31 E-value=0.029 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+.|+|++||||||+.+.|+..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999997544
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.034 Score=55.60 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987553
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.021 Score=58.10 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++.+++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999988763
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.21 E-value=0.025 Score=55.53 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|.||.||||||+.+.|.--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.20 E-value=0.031 Score=55.80 Aligned_cols=20 Identities=35% Similarity=0.745 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~ 169 (1128)
++||+|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.19 E-value=0.034 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.08 E-value=0.031 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++.|.|++||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999987764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.037 Score=55.54 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++|-+++|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999977553
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.036 Score=53.42 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.05 E-value=0.036 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.037 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+|-||.||||||+.+.|..-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.00 E-value=0.034 Score=55.79 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++|-||+||||||+.+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.96 E-value=0.037 Score=53.16 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
|+.++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.039 Score=53.68 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.24 Score=50.16 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~ 943 (1128)
.+|+|+||+=. |+.++...+.+.|.+...++.+|++|++.+-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 46999999954 778887788888876445678999999877654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.82 E-value=0.031 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.++|+.||||||+.+.|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998655
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.76 E-value=0.035 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
-+|+|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.04 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++|.||+||||||+.+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.036 Score=61.48 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|++|+|||||+|+|.|.-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999954
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.72 E-value=0.083 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
||.|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.70 E-value=0.04 Score=55.00 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 001189 773 KVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~ 792 (1128)
+|||.|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.67 E-value=0.041 Score=55.16 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++|.++-+.|.+||||||+.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999987533
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.66 E-value=0.044 Score=52.19 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=26.4
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
..++|.++++.|+-|||||||.+.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999999987663
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.66 E-value=0.042 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 688999999999999998864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.61 E-value=0.048 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.-+++|+||.||||||+.+.|+-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998755
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.089 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.039 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|+||.||||||..+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998544
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.56 E-value=0.048 Score=54.56 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
++.+++++||+|+||||.+--|+..+.- .| .+|+++.=|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g------~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG------KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TT------CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------CcEEEEEecc
Confidence 5789999999999999998777765432 22 3577776554
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.045 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
-+++|+++.|.|++|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999987754
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.037 Score=59.51 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
.-++||+|++|+|||||++.|...+... | .+||++.=+|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~-g------~~vavlavDps 93 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE-G------LKVAVIAVDPS 93 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT-T------CCEEEEEECCC
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc-C------CceeeecCCCc
Confidence 3489999999999999999998765321 2 24677666654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.042 Score=52.92 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999998753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.51 E-value=0.038 Score=53.24 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999865
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.47 E-value=0.042 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998865
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.032 Score=56.62 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++..|+|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.07 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.046 Score=52.81 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.37 E-value=0.042 Score=56.77 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
-+.+.||+|||||||.+.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 4779999999999999999997742 3455554
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.047 Score=52.04 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.33 E-value=0.04 Score=54.76 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.32 E-value=0.047 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+|-||.||||||+.+.|.--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998655
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.21 E-value=0.056 Score=51.44 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=26.6
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.+||.++.+.|+=||||||+.+.+.+-+-.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999977643
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.051 Score=54.42 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++|-.|+|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999877554
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.12 E-value=0.048 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999987653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.10 E-value=0.045 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.04 E-value=0.051 Score=55.17 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.05 Score=54.35 Aligned_cols=20 Identities=40% Similarity=0.805 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~ 169 (1128)
++||+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999885
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.055 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+|.+++|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999987664
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.97 E-value=0.056 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|+||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997554
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.051 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999987663
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.94 E-value=0.051 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.065 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.063 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|+++|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.82 E-value=0.057 Score=52.51 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998774
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.06 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.061 Score=51.51 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|..|+|||||++-+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998776
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.66 E-value=0.054 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
|+.++|.+|+|||||++.+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988753
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.56 E-value=0.063 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.=++.|+||.||||||+.+.|.--+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478899999999999999998654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.063 Score=51.67 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
++.+||+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999987743
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.54 E-value=0.061 Score=53.71 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|||+|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.53 E-value=0.053 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+.+.||+|+||||++++|+.++.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.51 E-value=0.057 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
++||+|...+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999885
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.46 E-value=0.06 Score=52.34 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.45 E-value=0.054 Score=54.35 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
.+-.++++|||+|+||||.+--|+-.+. .. +.+|+++.=|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~------~~kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DE------GKSVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HT------TCCEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HC------CCceEEEeecc
Confidence 3445889999999999998877765442 11 23578776654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.12 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.066 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|.|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999888753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.41 E-value=0.072 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|.+|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999877643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.40 E-value=0.061 Score=57.66 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.-++||.|+.|||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999988653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.067 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.|+||.||||||+.+.|.--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.062 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.34 E-value=0.034 Score=58.35 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999876553
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.059 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999999765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.068 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999998864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.071 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999988753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.30 E-value=0.075 Score=53.27 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=25.4
Q ss_pred ceeeeeE-EeeCCCEEEEEcCCCccHHHHHHHHh
Q 001189 137 TLLNINL-DIPVGSLVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 137 ~L~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~ 169 (1128)
-|+++=- -+++|+++.|.|++|+|||||+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3444322 48999999999999999999985443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.26 Score=48.88 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~ 943 (1128)
+.+|+|+||+= .|..++...+.+.|.+-.++..+|++|++.+-+.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll 152 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhhh
Confidence 36899999863 3456677777787776444556788899876543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.28 E-value=0.067 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.2
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHh
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAML 169 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~ 169 (1128)
-+++|+++.|.|++|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 38999999999999999999987554
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.069 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|..|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987554
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.22 E-value=0.067 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.5
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
-+++|+.+-|.||+|||||||..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999999997665
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.17 E-value=0.071 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.8
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+++.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.068 Score=54.32 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
-+++|+++.|.|++|||||||..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.069 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.08 E-value=0.074 Score=50.51 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.079 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.86 E-value=0.12 Score=50.14 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=26.8
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.++.--+.+ .|.-|.|.|++|+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 688899999999999999977653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.069 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.079 Score=50.94 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.069 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.07 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999997665
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.80 E-value=0.042 Score=57.70 Aligned_cols=39 Identities=8% Similarity=0.194 Sum_probs=27.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 195 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 195 (1128)
++||.|++||||||+.+.|...+... .-++++++||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------GVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------TCCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc-------CCCeEEEeCCCCC
Confidence 79999999999999999987655321 1136789998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.071 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.071 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.63 E-value=0.071 Score=53.34 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
-.++++|||+|+||||.+--|+-.+. ..| .+|+.+.=|.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------~kV~lit~Dt 47 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQG------KSVMLAAGDT 47 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TTT------CCEEEECCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CcEEEEeccc
Confidence 35799999999999998877776553 222 3577776543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.61 E-value=0.074 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+.|.||+|+||||++++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999998763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.58 E-value=0.14 Score=49.44 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=24.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.++..-+.+. |.=|.|+|++|+||||+...|..
T Consensus 4 ~lH~~~v~~~-g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDIY-GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEET-TEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHH
Confidence 4555445444 77899999999999999877653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.56 E-value=0.053 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999998753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.54 E-value=0.086 Score=50.27 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.1 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.51 E-value=0.082 Score=52.26 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.08 Score=55.41 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.8
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.|.+|++.+|+|+.|+|||||+..|.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999987543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.50 E-value=0.078 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.-+.++||+|+|||.|.++|++.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4467899999999999999998753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.49 E-value=0.084 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887544
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.11 Score=49.37 Aligned_cols=22 Identities=36% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|.|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999887753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.40 E-value=0.067 Score=55.38 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.-+.+.||+|||||++++.|+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 4578999999999999999998763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.36 E-value=0.083 Score=56.57 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+++|+|+.|+|||||+..|...+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.11 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999888764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.27 E-value=0.057 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+.+.||+|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999998763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.25 E-value=0.091 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|..|+|-|+-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999986665
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.18 E-value=0.091 Score=55.04 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|||.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.11 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
||.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999988654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.17 E-value=0.16 Score=48.48 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.13 E-value=0.09 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.12 E-value=0.092 Score=52.38 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
..+++++||+|+||||.+--|+-.+.. .| .+|+++.=|.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-~g------~kV~lit~Dt 48 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-KG------RRPLLVAADT 48 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TT------CCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-CC------CcEEEEeccc
Confidence 457899999999999998888765531 22 3477766553
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.10 E-value=0.09 Score=50.11 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.095 Score=50.53 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
||.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.09 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.094 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.093 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987664
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.1 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.90 E-value=0.1 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.89 E-value=0.1 Score=52.25 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=24.9
Q ss_pred ceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHH
Q 001189 760 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTL 791 (1128)
Q Consensus 760 ~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l 791 (1128)
-|+++-- -+++|+.+-|.|++|+|||+|..-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 3444432 3899999999999999999998543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.088 Score=55.08 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=27.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.|-+||+.+|+|++|+|||||+..|....
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999888644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.81 E-value=0.1 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987664
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.79 E-value=0.091 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
+.+.||+|+||||+.++|+.++..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 679999999999999999987653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.11 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
-|++|+.+.|.|++|+||||+...++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999977763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.091 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
||.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.093 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.092 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.1 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.|+|..|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.091 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.69 E-value=0.13 Score=52.63 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
...+.|.||.|+||||+++.|+..+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 34688999999999999999998876433
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.64 E-value=0.094 Score=52.87 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.12 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+-|.||+|+||||++++|++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.54 E-value=1.4 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
..+++|+|..|.|||||++.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.53 E-value=0.1 Score=54.56 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 195 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 195 (1128)
++||.|+.|||||||.+.|.-.+.-..+ ....|+.++.|.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~----~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG----GEKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG----GGSCEEEEEGGGGB
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHhC----CCcceEeeccCCCC
Confidence 7899999999999999877543311000 12247888887653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.098 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.46 E-value=0.1 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999976653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.43 E-value=0.072 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.43 E-value=0.17 Score=48.96 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=26.0
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
.++..-+.+ .|.=+.|.|++|+|||||...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555555 788899999999999999977753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=0.1 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999887753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.072 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.14 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.29 E-value=0.1 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|+|+|+.|+|||||++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999998774
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.25 E-value=0.099 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+.++||+|||||.|.++|+..+
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.12 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.21 E-value=0.078 Score=50.97 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.11 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|..|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999987753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.18 E-value=0.076 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.18 E-value=0.11 Score=52.39 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~ 944 (1128)
++.|+++||.= .+-......+...+......+.+|+++++.+.+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhchH
Confidence 56899999963 34445555666777665556778888888766543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.12 E-value=0.11 Score=52.16 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=23.0
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
+++|+.+-|.|++|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986665
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.06 E-value=0.11 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
+++|+.+-|.||+||||||+..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999986443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.12 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|+.|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988863
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.98 E-value=0.11 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|+|+.|+|||||++-+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3899999999999999987753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.93 E-value=0.11 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+-+.||+|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999877654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.92 E-value=0.13 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
|||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.86 E-value=0.12 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=22.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC-CCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL-PPV 175 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~-~~~ 175 (1128)
.++|||.-.||||||+++|+|.- -|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 58999999999999999999964 254
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.82 E-value=0.19 Score=52.39 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=21.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
=++||||-.-+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999974
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.76 E-value=3 Score=42.68 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
..+++|+|.-|.|||||++.++.-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.76 E-value=0.11 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+|||||..-+|||||+++|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.083 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.71 E-value=0.13 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999877543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.71 E-value=0.098 Score=53.75 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.+.||+|||||+|+++|+.++
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999876
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.66 E-value=0.2 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
||.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.16 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988843
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.50 E-value=0.14 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999986553
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.31 E-value=0.18 Score=48.78 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceE
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 802 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I 802 (1128)
++.++|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999998877667777743
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.25 E-value=0.12 Score=51.57 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
.-.++++|||+|+||||.+--|+-.+. .. ..+|+++.=|.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~------g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KK------GFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HT------TCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HC------CCceEEEEeec
Confidence 345789999999999998877775442 11 23588877654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.23 E-value=0.12 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+.+.||+|||||++.++|+.+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999999865
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.15 E-value=0.091 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
++.++|+.|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988753
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.15 E-value=0.13 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.++|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.10 E-value=0.14 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998776
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.09 E-value=0.14 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.05 E-value=0.14 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+-|.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.04 E-value=0.16 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCc
Q 001189 773 KVGIVGRTGAGKSSMLNTL-FRIVELERG 800 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l-~g~~~p~~G 800 (1128)
++.|+|.+|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 7899999999999999776 455667777
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.00 E-value=0.13 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
..+.|.||.|+||||+++.++..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999988754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=0.13 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
-+|+|+||.++|||||++.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.93 E-value=0.16 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.+||..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.92 E-value=0.11 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987644
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.15 Score=48.69 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.89 E-value=0.15 Score=51.76 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhc
Q 001189 149 SLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
.++||+|+.||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.68 E-value=0.14 Score=53.36 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 773 KVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
-|||+|..|||||||+..|+ |..+ ..|++. +|..+.+..+.+..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 37999999999999998885 4443 245553 3444445555555555544
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.16 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999987653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.53 E-value=0.15 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+++||.-+||||||+++|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.43 E-value=0.15 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987763
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.32 E-value=0.16 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+-+.||.|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999998653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.27 E-value=0.17 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977664
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.19 E-value=0.15 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.19 E-value=0.17 Score=51.16 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhc
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g 793 (1128)
.+|||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.18 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988665
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.77 E-value=0.19 Score=48.93 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHh--cCCCCCCc
Q 001189 773 KVGIVGRTGAGKSSMLNTLF--RIVELERG 800 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~--g~~~p~~G 800 (1128)
|+.|+|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999998872 23457777
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.68 E-value=0.18 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+.+.||+|+||||++++++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999987653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.68 E-value=0.24 Score=47.46 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=24.0
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++..-+.+ .|.-|.|.|++|+||||+...|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44444443 488899999999999999866653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.67 E-value=0.14 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.+.||+|||||+++++++.+.
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999975
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.66 E-value=0.21 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
-+||+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999999764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.53 E-value=0.22 Score=52.35 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+=++||||...+|||||+++|++--
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999863
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.50 E-value=0.2 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHH-hcCCCCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAM-LGELPPVSD 177 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l-~G~~~~~~g 177 (1128)
++.++|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 455566655
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.42 E-value=0.19 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999976554
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.29 E-value=0.19 Score=49.01 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+|.++|..|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.15 E-value=0.18 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 001189 151 VAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G 170 (1128)
+||+|..++|||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.11 E-value=0.17 Score=56.38 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=29.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 828 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 828 (1128)
+.++||||+|||-|.+.|++++..- -+..|+...+ ..|||-.|.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 6799999999999999999987432 4555543332 256666664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.18 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|+|+|+-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999865
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.85 E-value=0.21 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
-|||+|..++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3899999999999999999743
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.78 E-value=0.2 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++++|..|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999877653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.76 E-value=0.2 Score=51.86 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.7
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+.+.+|++++|+|+.|+|||||+..+..-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 67889999999999999999998777654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.73 E-value=0.27 Score=50.74 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-+++|.++-|.|++|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999987777654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.65 E-value=0.34 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
-.|.=+.|+|++|+||||+.-.|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999877653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.61 E-value=0.22 Score=48.39 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=17.9
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 001189 150 LVAIVGGTGEGKTSLISAM 168 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l 168 (1128)
++.|+|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999988
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.44 E-value=0.22 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.+.||.|+||||++++++.++
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5799999999999999999865
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.34 E-value=0.22 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
-+.+.||+|+|||++.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999998753
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.28 E-value=0.17 Score=54.90 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=27.1
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.++++..+.+.||.|+||||+.++|++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999999873
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.09 E-value=0.22 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.65 E-value=0.28 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.|||+|...+|||||++.|++...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.62 E-value=0.24 Score=51.15 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCE
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV-ELERGRILIDGF 807 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-~p~~G~I~i~g~ 807 (1128)
-+++|.++-|.||+|+|||||...++... .+..--++||..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 57899999999999999999986666544 333334677754
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.57 E-value=1.1 Score=43.80 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~ 943 (1128)
+.+|+|+||+ -.|...+...+.+.|.+--++...|++|++.+-+.
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll 123 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL 123 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhCH
Confidence 3589999996 45788888899999987555678899999977653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.40 E-value=0.26 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+||||.+-+|||||+++|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.35 E-value=0.15 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.-+.|+|+.|+|||||++.+.+.++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999998865
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.25 E-value=0.28 Score=50.76 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+.+-+||+++|.|+.|+|||||+.-++.-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 68899999999999999999998777643
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.00 E-value=0.25 Score=47.62 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 5899999999999999987654445444
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.90 E-value=0.27 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-.+||||.+.+|||||+++|++.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=0.28 Score=49.01 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~ 943 (1128)
+.+++++||.-. +.......+...+......+..++++++.+.+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 467999999764 445566666677766555677888888876653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.74 E-value=0.42 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.3
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
.-.|.=+.|.|++|+||||+.-.|..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34678899999999999998866553
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.64 E-value=0.28 Score=48.93 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=33.2
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 943 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~ 943 (1128)
+.+++++||.= .+.......+.+.|.+..+...++++++....+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHhH
Confidence 34799999974 5777888888888887655666777777665543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.46 E-value=0.24 Score=55.17 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCCCCCCceee----cCcEEEEecCC
Q 001189 151 VAIVGGTGEGKTSLISAMLGELPPVSDASAVI----RGTVAYVPQVS 193 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----~~~i~~v~Q~~ 193 (1128)
+.++||+|||||-|.+.|++++..- .... --.+|||..+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecch
Confidence 6799999999999999999977321 1111 12388888864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.44 E-value=0.2 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+.+.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999999876
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=81.83 E-value=0.39 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+-+.||.|+|||+++++|.+.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.81 E-value=0.23 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999999875
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.76 E-value=0.38 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 001189 774 VGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 774 v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+-+.||.|+|||++++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7789999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.52 E-value=0.26 Score=51.12 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=29.8
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
+++.+ +.|.+|++++|+|+.|+|||+|+..+..-..-+..
T Consensus 57 ~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~ 96 (276)
T d1fx0a3 57 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNV 96 (276)
T ss_dssp TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTC
T ss_pred EEecc-ccccCCceEeeccCCCCChHHHHHHHHhhhcccCc
Confidence 44433 67899999999999999999999765544443333
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.90 E-value=0.34 Score=50.07 Aligned_cols=20 Identities=55% Similarity=0.787 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 001189 151 VAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G 170 (1128)
++|+|..|+|||||+..|+.
T Consensus 5 v~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.65 E-value=0.36 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 001189 151 VAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 151 ~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+||+|..++|||||++.|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.56 E-value=0.35 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
..++|=|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4688999999999999999987553
|