Citrus Sinensis ID: 001190
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1128 | 2.2.26 [Sep-21-2011] | |||||||
| Q84JM4 | 1108 | Topless-related protein 3 | yes | no | 0.980 | 0.998 | 0.771 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.968 | 0.966 | 0.739 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.982 | 0.628 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.975 | 0.982 | 0.626 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.968 | 0.962 | 0.619 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.354 | 0.294 | 0.242 | 3e-12 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.494 | 0.365 | 0.209 | 2e-11 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.176 | 0.503 | 0.25 | 3e-11 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.444 | 0.297 | 0.227 | 4e-11 | |
| Q9V3J8 | 361 | Protein will die slowly O | yes | no | 0.171 | 0.534 | 0.272 | 5e-10 |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1787 bits (4629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1130 (77%), Positives = 980/1130 (86%), Gaps = 24/1130 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGFFFN KYF+EKV AG+WD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAV+ILV DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTKTARGIML ELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+ PNGPLAP+ VN PV + KPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AAANA ALA WMA AS +S+VQAAVVT + +P PQNQ+S+LK PRTPP TPG+VDYQN
Sbjct: 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT-WSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPAPS EEVTY + R Q WSL+DLP A++LHQGSTV SM+F+P T
Sbjct: 301 PDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+ GEITLWELA R+RLVS+PFKIWDM+ CS FQA I K+ PISV+RVAWSPDG
Sbjct: 360 LLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N++GVAFTKHLIQLY+++G NDLRQH++IDAHVGAVNDLAFA PN+ LCV+TCGDDKLIK
Sbjct: 420 NFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++SGRK F FEGH+APVYSICPH+KENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCT MLYSADG+RLFSCGTSKDGDSFLVEWNESEG+IKRTY F+KK GVVQFDT++N
Sbjct: 540 KWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGED QIKFWDM+N+N+LTSTDAEGGLP LP LRF+K+GNLLAVTTADNGFKILAN
Sbjct: 600 HFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
G RSLRA+E P E +RTP++ A+ + ++V NCKVER SPVR S ++NGV
Sbjct: 660 PAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV------NCKVERGSPVRHSQMLNGV 713
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP+ K R +DD TDKPK WQLAEI+D QC T+P++ +S+KVV+LLYTNS G
Sbjct: 714 DPS-----KSR-IDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAG 767
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+Q+LWKW NEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLE A PCIA
Sbjct: 768 ILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIA 827
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNN+IAIG EDSTIH
Sbjct: 828 LSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIH 887
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQ+C WSIDTWEKRKSV I +P
Sbjct: 888 IYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMP 947
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
AGK GDTRVQF+ DQ+R+LVVHETQLA++DASKME IRQW PQD+LSAPIS AVY+CN
Sbjct: 948 AGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACN 1007
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078
SQL++ TF DGNIGVFDAD+LRLRC I+PS YL G+Q + PLVVAAHP +PNQFA
Sbjct: 1008 SQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLP----QGNQGLSPLVVAAHPQDPNQFA 1063
Query: 1079 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQLQR 1128
+GL DGSVK+MEP+E EGKWG+ PP + +NS S+TSN TP+QLQR
Sbjct: 1064 VGLNDGSVKMMEPTEGEGKWGMIPPSE--AINS---PSTTSNQTPEQLQR 1108
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1685 bits (4363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1106 (73%), Positives = 929/1106 (83%), Gaps = 13/1106 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTAAAANANA-LAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDY 297
A A LAGWMAN + SSSV + VV AS P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + S+ +KVS S+ SS +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKA---SIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 954
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQL W+ D+WEK+KS
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSA 954
Query: 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAV 1014
I +P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A
Sbjct: 955 IQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSAS 1014
Query: 1015 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074
YSCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+ P S ++P V+ AHP EP
Sbjct: 1015 YSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM-PQPTPNSAPIFPQVITAHPQEP 1073
Query: 1075 NQFAIGLTDGSVKVMEPSESEGKWGV 1100
NQ A+GL+DGSVKV+EPSE +WGV
Sbjct: 1074 NQLAVGLSDGSVKVIEPSELSRRWGV 1099
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
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Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1148 (62%), Positives = 876/1148 (76%), Gaps = 37/1148 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P + + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PTA+ LAGWM S+ SSV V+A +I + + + LKHPRTPPT +DY
Sbjct: 241 PTASPV-PTPLAGWM---SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ +G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I S+A +A++A S+G +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIA-AAAAAAATSAG-----HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 V-AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 946
Query: 943 SIDTWEKRKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK++S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW
Sbjct: 947 NTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060
+++L API+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N +
Sbjct: 1007 AVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN- 1064
Query: 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSN 1120
V+PLV+AAHP EPN FA+GL+DG V + EP ESEGKWGV+PP +NG + T+ S
Sbjct: 1065 -VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGA 1123
Query: 1121 HTPDQLQR 1128
DQ QR
Sbjct: 1124 SASDQPQR 1131
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1448 bits (3748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1148 (62%), Positives = 866/1148 (75%), Gaps = 48/1148 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P + ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PT + LAGWM S+ SSV V+ I + + + LKHPRTPP+ VDY
Sbjct: 241 PTPSPV-PTPLAGWM---SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGS 345
+ D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS
Sbjct: 297 SGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV TCGDDK IKVW+ +G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ DN K++AN+ GLR L VEN E+ + I S+ + VE
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPM-----------------VE 699
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
R + V P +NG SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 700 RPASVVSIPGMNG---DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMR 756
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM
Sbjct: 757 V-TKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMT 815
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 816 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 876 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 935
Query: 943 SIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW
Sbjct: 936 NTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW 995
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060
P +API+ A +SC+SQL++ +F D I VF + LRLRC + PS YL S+ N +
Sbjct: 996 -PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN- 1053
Query: 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSN 1120
V+PLV+AAHP E N FA+GL+DG V + EP ESEGKWGV+PP +NG ++ T + S
Sbjct: 1054 -VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGA 1112
Query: 1121 HTPDQLQR 1128
DQ QR
Sbjct: 1113 SASDQPQR 1120
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1133 (61%), Positives = 856/1133 (75%), Gaps = 40/1133 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFK++VH+LEKESGFFFNM+YFE+ V AG+WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++D AKAVDILV +LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTP-VNLPVAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DHTC PNG P+P N + +V K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPV--PQNQVSVLK--HPRTPPTPGM- 294
PT A +LAGWM N SVQ V+A I + P + VS+LK PR+PPT +
Sbjct: 241 PTPAPL-TTSLAGWMPNP----SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLS 295
Query: 295 VDYQNPDHEQLMKRLRPAPSAE----------EVTY--SSSRHQTWSLDDLPRTVAVSLH 342
+DYQ D E ++KR RP ++ VTY S H T+S DDLP+ V+ L
Sbjct: 296 MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILS 355
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
QGS + SMDFHP QT+LLVG++ G+I +WE+ R++LVS+ FK+WD+A C++ QAS+
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP 462
+ +V+RV WSPDG +GVA++KH++ +YSY G DLR H +IDAH G VNDLAF+ P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521
N+ LCVVTCG+DK IKVW+ ++G KL FEGHEAPVYS+CPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
AWLYD MGSRVDYDAPG CT+M Y ADG+RLFSCGTSK+G+SF+VEWNESEG +KRTY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G K+S GVVQFDT +N FL G++ Q+KFWDMD+V++L+ST AEGGLP+ P LR +KEG
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK--VSASSAVSSGTPA 699
LLAV+T DNG KILANA G R L ++ N ++ R P SVA V +S T
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 700 NCKV-ERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
+ + ERS PV + G++ +RS+ KPR DD +K K W+L EI + Q R +
Sbjct: 716 SLSMGERSGPVAS---VTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLR 771
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+P+ T ++VV+L+YTNS +LAL N KLWKW ++E+N GKA ++ PQ W PS
Sbjct: 772 LPD-TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
SG+LM ND N E+ VPC ALSKNDSYVMSA+GGKISLFNMMTFK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
LAFHPQDNNIIAIG +DS+I IYNVRVDEVKSKLKGHQKR+TGLAFS LN+LVSSGAD
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKM 994
+QLCVWS+D WEK+ S I IP+G +P TRVQF+ DQ+ +LVVH +QLAIY+A K+
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1054
E ++QW P+++ S ++ AVYSC+SQ ++A F DG++ + A TL+L+C I P++YL PS
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL-PS 1068
Query: 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNG 1107
N S VYP VAAHP EPNQFA+GLTDG V V+EP EGKWG+S P +NG
Sbjct: 1069 --NPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENG 1119
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 179/471 (38%), Gaps = 71/471 (15%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM----------------------RDRL 380
GS+V+S+ F Q + GS + I +W+ A R+R+
Sbjct: 840 HGSSVLSVAFSADGQRVA-SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 381 VS----KPFKIWDMAA--CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434
S K KIWD A+ C+ + + V VA+SPDG V H I+++
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGR-----VQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGH 493
A S Q ++ H +V +AF+ + V + DK IK+W+ SG EGH
Sbjct: 954 -AASGTCTQ--TLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTASGTCTQTLEGH 1008
Query: 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS 551
V+S+ + Q + S + D IK W DT GH W ++++S DG
Sbjct: 1009 GGSVWSVA--FSPDGQRVASGSDDKTIKIW--DTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
R+ S D + W+ GT +T G S V F + D IK
Sbjct: 1065 RV----ASGSDDHTIKIWDAVSGTCTQTLEG-HGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
WD + + + GG + + FS +G +A + D KI A G
Sbjct: 1120 WDAASGTCTQTLEGHGGW--VHSVAFSPDGQRVASGSIDGTIKIWDAASG------TCTQ 1171
Query: 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING----VDPTSRSMDK 727
E ++SVA S + K+ ++ + + G V + S D
Sbjct: 1172 TLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDG 1231
Query: 728 PRTVDDVTDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
R +D K W A SG C T + +++ + YTN+ +
Sbjct: 1232 QRVASGSSDNTIKIWDTA----SGTC---TQTLNVGSTATCLSFDYTNAYI 1275
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 134/641 (20%), Positives = 259/641 (40%), Gaps = 83/641 (12%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKD 404
+V+++ F P + L G S G + WE A ++ L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464
V+ V +S DG + ++L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 465 LLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
L+ + + D+ +++W++S G L+ F+GH VYS+ + ++ + + + D ++ W
Sbjct: 961 LM-LASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 524 LYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
D S+ Y GH ++++S+DG+ L S D + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G VV F + G+D ++ WD+ + N L + +G + L FS G
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTL--QGYTSWVRFLVFSPNG 1128
Query: 642 NLLAVTTADNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699
LA ++D ++ +++ L +L+ N + +VA ++ S
Sbjct: 1129 VTLANGSSDQIVRLWDISSKKCLYTLQGHTNW--------VNAVAFSPDGATLASGSGDQ 1180
Query: 700 NCKVERSSPVRPSPIING----VDPTSRSMDKPRTVDDVTDKP-KPWQLAEIVDSGQCRL 754
++ S + I+ G V+ + D +D+ + W+ ++S +C L
Sbjct: 1181 TVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWE----INSSKC-L 1235
Query: 755 VTMPESTDTSSKVV-----RLLYTNSA---VGLLALGSNGVQKLWKWHRN-----EQNPS 801
T T + VV +L + S+ V L + S+ ++ H N NP
Sbjct: 1236 CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPD 1295
Query: 802 GKATASAVPQH----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK-ISL 856
G AS W SS + + V + S + + + S + + + L
Sbjct: 1296 GSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW---VSSVTFSPDGTMLASGSDDQTVRL 1352
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916
+++ + + + TF+ + F P D I+A G+ D T+ ++++ + L+GH
Sbjct: 1353 WSISSGECLYTFLGHTNWVGSVIFSP-DGAILASGSGDQTVRLWSISSGKCLYTLQGHNN 1411
Query: 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
+ + FS +L S D + +W+I + E ++ HI
Sbjct: 1412 WVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHI 1452
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S + +SPDG Y+G I+++ D + H +N+ +++ +KL
Sbjct: 109 SISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFSWSSDSKL-- 162
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+V+C DDKL+KV+++ SGR + +GH V+ C + I S + D I+ W
Sbjct: 163 IVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCC--FNPSGTLIASGSFDETIRIWC-- 218
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ PGH +++ ++ DG+ L S D + W+ + GT +T
Sbjct: 219 ARNGNTIFSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTTGTCVKTLIDEE 274
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
V+F + LA ++ +K WD + +L
Sbjct: 275 HPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 132/580 (22%), Positives = 224/580 (38%), Gaps = 79/580 (13%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V V++SPDG + + I+L+ + L+ I H VN++ F+ K L
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKT---ITGHEQTVNNVYFSPDGKNLA 1171
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW--- 523
+ D IK+W+ SG+ L GH A V ++ + Q I + + D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKLWHRQ 1227
Query: 524 ---LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
L T+ D W ++ +S DG L S D + W ++G + +T
Sbjct: 1228 DGKLLKTLNGHQD------WVNSLSFSPDGKTL----ASASADKTIKLWRIADGKLVKTL 1277
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
G S V F + + D+ IK W+ + + T T GG+ + F +
Sbjct: 1278 KG-HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVY---AVNFLPD 1333
Query: 641 GNLLAVTTADNGFKILANAIGLRSLRAVENP---PFEAL--RTPIESVALKVSASSAVSS 695
N++A + DN ++R + P P E L + + +V+ S ++
Sbjct: 1334 SNIIASASLDN------------TIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATA 1381
Query: 696 GTPANCKVERS---SPVRPSP---IINGVDPT-------SRSMDKPRTVDDVTDKPKPWQ 742
G N ++ S S ++ P I G+ T S + DK + V D
Sbjct: 1382 GADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGKALKT 1441
Query: 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---- 798
L I + V T + R ++ V L + +K K H +E
Sbjct: 1442 L--IGHDNEVNKVNFSPDGKTLASASR----DNTVKLWNVSDGKFKKTLKGHTDEVFWVS 1495
Query: 799 -NPSGKATASAVPQH----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853
+P GK ASA W SG L+ + A +L V + + + S + S + K
Sbjct: 1496 FSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDL---VYSVNFNPDGSMLASTSADK 1552
Query: 854 -ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912
+ L+ ++ TF +F P D IA +ED T+ I+ + + + L
Sbjct: 1553 TVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTVKIWQID-GHLLTTLP 1610
Query: 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952
HQ + FS L+S D +W D+ + + S
Sbjct: 1611 QHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFDSQQAKTS 1650
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1128 | ||||||
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 1.0 | 0.996 | 0.856 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.996 | 0.840 | 0.0 | |
| 224123676 | 1133 | predicted protein [Populus trichocarpa] | 0.993 | 0.989 | 0.831 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.997 | 0.824 | 0.0 | |
| 357511795 | 1129 | hypothetical protein MTR_7g112460 [Medic | 0.994 | 0.993 | 0.843 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.998 | 0.998 | 0.823 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.998 | 0.828 | 0.0 | |
| 357441817 | 1140 | WD repeat-containing protein [Medicago t | 0.998 | 0.987 | 0.815 | 0.0 | |
| 224125092 | 1124 | predicted protein [Populus trichocarpa] | 0.993 | 0.997 | 0.839 | 0.0 | |
| 356505795 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.997 | 0.834 | 0.0 |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1982 bits (5134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1132 (85%), Positives = 1044/1132 (92%), Gaps = 4/1132 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKF ESVHKLEK+SGF+FNMKYFEEKVQAG+W+EVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTCSPPNGPLAP PVNLPVAAVAKP++Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
TAAAANA ALAGWMANASASSSVQAAVVTASS+PVPQNQVSVLK PRTPPT PGMVDYQN
Sbjct: 241 TAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHEQLMKRLRPA S +EVTY +SR Q +WSLDDLPRTVA+++HQGS V SMDFHPSHQT
Sbjct: 301 PDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL R+RLVSKPFKIW++ +CSL FQAS KD P+SV+RV WSPDG
Sbjct: 361 LLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ VG AF KHLI LY+Y GS+DLRQ +IDAH G VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 421 SLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 481 VWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTTQ 597
HWCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG IKR YAGFRKKS GVVQFDTTQ
Sbjct: 541 HWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTTQ 600
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
NHFLA GED QIKFWDMDN N+LTS DA+GGLP+LPRLRF+KEGNLLAVTTADNGFKI+A
Sbjct: 601 NHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKIIA 660
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLR+LRAVE P FEALR+PIES A+KVS +S V++ +P N KVERSSPVRPSPI+NG
Sbjct: 661 NAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLKVERSSPVRPSPILNG 720
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP SRSM+K RTVDDV DK KPWQLAEIV+ +CRLVT+P+STD+SSKVVRLLYTNS V
Sbjct: 721 VDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYTNSGV 780
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
G+LALGSNG+QKLWKW R++QNPSGKATA AVPQHW P+SGLLMANDV+GVNLEEAVPCI
Sbjct: 781 GILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEAVPCI 840
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 841 ALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 900
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQLCVWSIDTWEKRKS TI I
Sbjct: 901 HIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSFTIQI 960
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
PAGK PTG TRVQF++DQ R+LVVHETQLAIYDASKM+RIRQW PQDA+SAPIS A YSC
Sbjct: 961 PAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYAAYSC 1020
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077
NSQL+FA+F DGNIGVFDAD+LRLRC IAPS YLSP+VLNGSQ++YPLVVAAHP E NQ
Sbjct: 1021 NSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNGSQSIYPLVVAAHPHETNQL 1080
Query: 1078 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1128
A+GLTDGSVKVMEP S+GKWG SPPVDNGILN R T+SS+TSNHTPDQLQR
Sbjct: 1081 AVGLTDGSVKVMEPKASDGKWGTSPPVDNGILNGRTTSSSTTSNHTPDQLQR 1132
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1972 bits (5109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1132 (84%), Positives = 1034/1132 (91%), Gaps = 9/1132 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGF+FNMKYFE+KVQAG+W+EVEKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR DKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK AR IMLIELKKLIEANPLFRDKL FP LKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSPPNGPLAPTPVNLPVA KPA YA LG HSPFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHSPFPP 237
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T A ANANALAGWMANASASSSVQAAVVTASSIPVPQNQVS+LKH RTPP+ PGMVDYQN
Sbjct: 238 TGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQN 297
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
P+H+QLMKRLR A S EEVTY + R Q +WS++DLPRTVA +LHQGSTV SMDFHP+H T
Sbjct: 298 PEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHT 357
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL +R+RL+SKPFK+WD+++ SL FQA+I KD PISVSRV WSPDG
Sbjct: 358 LLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPDG 417
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+VGVAFTKHL+ LYSY SN+L Q S+IDAHVG VNDLAFA+PNK LCVVTCG+DKLIK
Sbjct: 418 TFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIK 477
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++ GRKLF FEGHEA VYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAPG
Sbjct: 478 VWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPG 537
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCTTMLYSADGSRLFSCGTSKDGDS+LVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 538 KWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQN 597
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGEDSQIKFWDMDNVNILT TDAEGGLP+LPRLRF+KEGNLLAVTT DNGFKILAN
Sbjct: 598 HFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILAN 656
Query: 659 AIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
A+G+RSL+A+E+ PFEALR+P+ES ALKVS SAV+S +P NCKVERSSPVRP IING
Sbjct: 657 AVGMRSLKAIESTTPFEALRSPMES-ALKVSGPSAVASVSPVNCKVERSSPVRPPSIING 715
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
V+ R++DK RTV+D DK KPWQLAEIVD CRLVTMP++ D+S KVVRLLYTNS V
Sbjct: 716 VEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGV 775
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV GVNLEEAVPCI
Sbjct: 776 GLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCI 835
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA+GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 836 ALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 895
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC+WSIDTWEKRKS+TI +
Sbjct: 896 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSITIQL 955
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
PAGK P GDTRVQF++DQ+R+LVVHETQ+AIYDASKM+RIRQW PQDAL APIS A YSC
Sbjct: 956 PAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAAYSC 1015
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077
NSQLV+ATFCDGN+GVFDADTLRLRC IAPS YL +VLN SQ +YPLVVA HPL+PNQ
Sbjct: 1016 NSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLNSSQAIYPLVVATHPLDPNQL 1075
Query: 1078 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1128
AIGL+DGSVKV+EP+ESEGKWGVSPP+DNGILN RT SSS TSNHTPDQ+QR
Sbjct: 1076 AIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNHTPDQIQR 1127
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123676|ref|XP_002330180.1| predicted protein [Populus trichocarpa] gi|222871636|gb|EEF08767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1140 (83%), Positives = 1027/1140 (90%), Gaps = 19/1140 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAK V+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS-YASLGTHSPFP 239
WQHQLCKNPR NPDIKTLFTDHTCSP NGPLA PVNLPVAA A + Y LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFP 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDYQ 298
T AAAN +ALA WMAN SASSSVQAAVVTASSIP+PQNQV VLK PRTPPT G+VDYQ
Sbjct: 241 ATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSR-HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
NPDHE L+KRLRPA S EEVTY +SR H +WSL+ LPRTVA SLH GS V+SMDFHPSH
Sbjct: 301 NPDHE-LIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHH 359
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS NGEITLWEL R+RL SKPFKIWDM+ACSL FQAS FKD ISV+RVAWSPD
Sbjct: 360 TLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQASGFKDASISVTRVAWSPD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 K--------VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529
K VW+L+GRKLFNF GHEAPVY+ICPHHKENIQFIFSTAIDGKIKAWLYD MG
Sbjct: 480 KAIYIMLKQVWDLTGRKLFNFGGHEAPVYNICPHHKENIQFIFSTAIDGKIKAWLYDNMG 539
Query: 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589
SRVDYDAPG WCTTMLYS DGSRLFSCGTSKDG+S+LVEWNESEG+IKR++ GFRKKS G
Sbjct: 540 SRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAG 599
Query: 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649
VVQFDTTQNHFLA G+D QIKFWDM+N N+LTSTDA+GGL LPRLRF++EGNLLAV+TA
Sbjct: 600 VVQFDTTQNHFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTA 659
Query: 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709
DNGFKILANA GLRSLRAVE FEALR+P+ES A+KVS +S++++ +P NCKVER+SPV
Sbjct: 660 DNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASPVNCKVERNSPV 719
Query: 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769
RPSPI+NGVDP +RSM+KPRTVDDV DK KPWQLAEI D +CRLVT+PES DTSSKVVR
Sbjct: 720 RPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVR 779
Query: 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829
LLYTNS VG+LALG+NG+QKLWKW RNEQNPSGKATAS PQHW P+SGLLM NDV+GVN
Sbjct: 780 LLYTNSGVGMLALGANGIQKLWKWPRNEQNPSGKATASVAPQHWQPNSGLLMTNDVSGVN 839
Query: 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
LEEAVPCIALSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA
Sbjct: 840 LEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 899
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
IG EDSTIHIYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQLC+WSIDTWEK
Sbjct: 900 IGMEDSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEK 959
Query: 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 1009
RKSV I IPAGK+PTGDTRVQF++DQ R+LV+HETQLAIYDASKMERIRQW PQDA+SAP
Sbjct: 960 RKSVAIQIPAGKSPTGDTRVQFHSDQTRLLVIHETQLAIYDASKMERIRQWVPQDAVSAP 1019
Query: 1010 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1069
IS A YSCNSQL++ATFCDGNIGVFDAD+LRLRC IAPS Y NGSQTVYPLVVA
Sbjct: 1020 ISYAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSVY------NGSQTVYPLVVAT 1073
Query: 1070 HPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1128
HPL+PNQ A+GLTDGSVKV+EP+ESEGKWG SPPVDNG+LN R T+SS+TSNHT DQLQR
Sbjct: 1074 HPLDPNQLALGLTDGSVKVIEPTESEGKWGTSPPVDNGVLNGRTTSSSTTSNHTLDQLQR 1133
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1958 bits (5072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1131 (82%), Positives = 1028/1131 (90%), Gaps = 3/1131 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLP+AAVAKPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPP 240
Query: 241 TAAAANANALA-GWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQ 298
AAA GWMANASASSSVQAAVVTAS++PVPQNQV +LK PRTPP PGM+DYQ
Sbjct: 241 AAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
N DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH T
Sbjct: 301 NADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLL GS+NGEI+LWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG
Sbjct: 361 LLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
++VG+AFTKHLI LY+Y G N+L Q ++DAHVG VNDL+FA+PNK +C+VTCGDDKLIK
Sbjct: 421 SFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPG
Sbjct: 481 VWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 HWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQN 600
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
FLA GED Q+KFWDMDN+N+L S+DA+GGL +LPRLRF+KEGN+LAVTT DNGFKILAN
Sbjct: 601 RFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILAN 660
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGV
Sbjct: 661 ASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGV 720
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP RS +KPRTV+DV D+ KPWQL+EI+D QCR VTMPESTD+SSKVVRLLYTNSAVG
Sbjct: 721 DPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVG 780
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+QKLWKW R+EQNP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIA
Sbjct: 781 ILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIA 840
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 841 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 900
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRKS+ I +P
Sbjct: 901 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLP 960
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
AGK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCN
Sbjct: 961 AGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCN 1020
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078
SQL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA
Sbjct: 1021 SQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFA 1080
Query: 1079 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1128
+GLTDGSVKV+EP+ESEGKWG SPP+DNGILN R SSS TSNHT DQ QR
Sbjct: 1081 VGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511795|ref|XP_003626186.1| hypothetical protein MTR_7g112460 [Medicago truncatula] gi|355501201|gb|AES82404.1| hypothetical protein MTR_7g112460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1955 bits (5065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1128 (84%), Positives = 1026/1128 (90%), Gaps = 6/1128 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIML+ELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGT--HSPF 238
WQHQLCKNPR NPDIKTLF DH+C+P NGPLAPTPVNLPVAAVAKPA+Y SLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPF 240
Query: 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDY 297
PP AA ANANALAGWMANAS SSSVQAAVVTAS+IPVP NQVS+LK P TP T PGMV+Y
Sbjct: 241 PPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSILKRPITPSTTPGMVEY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLRPAPS EEV+Y S+R +WSLDDLPRTVA+SLHQGS+V SMDFHPSHQ
Sbjct: 301 QSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQ 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS+NGEI+LWEL MR+RLVSKPFKIWD++ACSLPFQA++ KD P SVSRV WS D
Sbjct: 361 TLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
G++VGVAFTKHLI +Y+Y GSN+L Q +IDAH+G VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+L+GR+LFNFEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAP
Sbjct: 480 KVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
GHWCTTMLYSADG+RLFSCGTSKDGDSFLVEWNESEG IKRTY GFRKKS GVVQFDTTQ
Sbjct: 540 GHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLA GEDSQIKFWDMDNVN LTST+AEGGL LP LRF+KEGNLLAVTTADNGFKILA
Sbjct: 600 NRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLRSLR VE P FEALR+PIES A KVS SSAV+ +P +CKVERSSP RPS I+NG
Sbjct: 660 NAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNV-SPVSCKVERSSPARPSQILNG 718
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP R+ +KPRTV+DV D+ K WQL EIVD CRLVTMP+STDTSSKVVRLLYTNS
Sbjct: 719 VDPAGRNAEKPRTVEDVMDRTKSWQLFEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGA 778
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNGVQKLWKW RN+QNPSGKATAS VPQHW P+SGLLM NDV+GVNLEEAVPCI
Sbjct: 779 GLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCI 838
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM+PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 839 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMAPPPASTFLAFHPQDNNIIAIGMEDSTI 898
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRI+GLAFST+L ILVSSGADA LCVWSIDTWEKRKSV I +
Sbjct: 899 HIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSVPIQL 958
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
P GK P G+TRVQF++DQ+R+LV HETQLAIYDASKMERIRQW PQD LSAPIS A YSC
Sbjct: 959 PVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSC 1018
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077
NSQL+FATFCDGN GVFDAD+LRLRC IAPSTY + + L+GSQ VYP VVAAHPLEPNQF
Sbjct: 1019 NSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTATTLSGSQAVYPFVVAAHPLEPNQF 1078
Query: 1078 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQ 1125
A+GLTDGSVKV+EP ESEGKWG SPP+DNG++N R +SSTSNHTPDQ
Sbjct: 1079 ALGLTDGSVKVIEPIESEGKWGSSPPMDNGMMNGR-AASSTSNHTPDQ 1125
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1955 bits (5064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1130 (82%), Positives = 1026/1130 (90%), Gaps = 4/1130 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRTPP TPG+VDYQN
Sbjct: 241 NVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V S+DFHPSH TL
Sbjct: 301 TDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDGN
Sbjct: 361 LLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKSNGVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVTT DNGFKI+ANA
Sbjct: 601 FLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSSPVRP PI+NGVD
Sbjct: 661 TGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSSPVRPPPILNGVD 719
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKVVRLLYTNSAVG+
Sbjct: 720 PMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGI 778
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGVNLEEAVPCIAL
Sbjct: 779 LALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIAL 838
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII+IG EDSTIHI
Sbjct: 839 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHI 898
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTWEKRKS+ I +PA
Sbjct: 899 YNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIPIQLPA 958
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALSAPIS A YSCNS
Sbjct: 959 GKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAAYSCNS 1018
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079
QL++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+AAHPLEPNQFA+
Sbjct: 1019 QLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEPNQFAV 1078
Query: 1080 GLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQLQR 1128
GL+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ QR
Sbjct: 1079 GLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1950 bits (5051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 936/1130 (82%), Positives = 1030/1130 (91%), Gaps = 2/1130 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTP+NLP+AAVAKPA+Y LG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA ANANALAGWMANASASSSVQAAVVTAS+IPVPQNQ PRTPP PGMVDYQN
Sbjct: 241 AAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DH+QLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG+
Sbjct: 361 LLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGS 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VG+AFTKHLI LY+ GSN+L Q ++DAHVG VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED Q+KFWDMDN+N+L ST+A+GGL +LPRLRF+KEGN+LAVTT DNGFKILANA
Sbjct: 601 FLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGVD
Sbjct: 661 SGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P RS++KPRTV+DVTD+ KPWQL+EI+D QCR VTMPESTD+SSKV+RLLYTNSAVG+
Sbjct: 721 PMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGI 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNG+QKLWKW R+E NP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIAL
Sbjct: 781 LALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG +DSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRK++ I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPA 960
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCNS
Sbjct: 961 GKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNS 1020
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079
QL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA+
Sbjct: 1021 QLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAV 1080
Query: 1080 GLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1128
GLTDGSVKV+EP+ESEGKWG PP DNGILN RT SSS TSNHT DQ QR
Sbjct: 1081 GLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1130
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441817|ref|XP_003591186.1| WD repeat-containing protein [Medicago truncatula] gi|355480234|gb|AES61437.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1946 bits (5040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1142 (81%), Positives = 1026/1142 (89%), Gaps = 16/1142 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNF------------RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKS 168
L+NF RENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKS
Sbjct: 121 LNNFSMPTDLYFISYDRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKS 180
Query: 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS 228
SRLRTLINQSLNWQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +
Sbjct: 181 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVA 240
Query: 229 YASLGTHSPFPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRT 288
Y SLG H PFPP A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRT
Sbjct: 241 YTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRT 300
Query: 289 PP-TPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV 347
PP TPG+VDYQN DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V
Sbjct: 301 PPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSV 360
Query: 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
S+DFHPSH TLLLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PI
Sbjct: 361 TSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPI 420
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SVSRV WSPDGN+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC
Sbjct: 421 SVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLC 480
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+VTCGDDKLIKVW+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD
Sbjct: 481 IVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDN 540
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS
Sbjct: 541 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKS 600
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647
NGVVQFDTTQN FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVT
Sbjct: 601 NGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVT 660
Query: 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707
T DNGFKI+ANA GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSS
Sbjct: 661 TVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSS 719
Query: 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767
PVRP PI+NGVDP SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKV
Sbjct: 720 PVRPPPILNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKV 778
Query: 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
VRLLYTNSAVG+LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AG
Sbjct: 779 VRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAG 838
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
VNLEEAVPCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNI
Sbjct: 839 VNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNI 898
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947
I+IG EDSTIHIYNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTW
Sbjct: 899 ISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTW 958
Query: 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS 1007
EKRKS+ I +PAGK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALS
Sbjct: 959 EKRKSIPIQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALS 1018
Query: 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1067
APIS A YSCNSQL++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+
Sbjct: 1019 APISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVI 1078
Query: 1068 AAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQL 1126
AAHPLEPNQFA+GL+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ
Sbjct: 1079 AAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQA 1138
Query: 1127 QR 1128
QR
Sbjct: 1139 QR 1140
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125092|ref|XP_002319498.1| predicted protein [Populus trichocarpa] gi|222857874|gb|EEE95421.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1943 bits (5033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 950/1131 (83%), Positives = 1031/1131 (91%), Gaps = 10/1131 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLVGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVF TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFLTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCK+PR+NPDIKTLF DHTCSP NGPLAP PV+LPVAAVAKPA Y SLG H PFP
Sbjct: 181 WQHQLCKHPRSNPDIKTLFIDHTCSPTNGPLAPAPVSLPVAAVAKPAPYTSLGAHGPFPA 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T AAANA ALAGWMANASASSSVQAAVVTASSIP+PQNQVSVLK RTPPT PG+VDYQN
Sbjct: 241 TGAAANAGALAGWMANASASSSVQAAVVTASSIPIPQNQVSVLKRQRTPPTAPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPA S EE TY +SR Q +WSL+DLPRTVA +LHQGSTV+SMDFHPSH T
Sbjct: 301 PDHE-LMKRLRPAQSVEEATYPASRQQASWSLEDLPRTVAFALHQGSTVMSMDFHPSHHT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS NGEITLWEL R+RL SKPFKIWD+ CSL FQAS FKD ISV+RVAWSPDG
Sbjct: 360 LLLVGSVNGEITLWELISRERLFSKPFKIWDLQGCSLQFQASGFKDASISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 420 NFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLFNFEGHEA VY+ICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDLTGRKLFNFEGHEAAVYNICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEG++KR++ GFRKKS GVVQFDTTQN
Sbjct: 540 HWCTTMLYSADGSRLFSCGTSKEGDSYLVEWNESEGSVKRSFLGFRKKSAGVVQFDTTQN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLA G+D QIKFWDM+N++ +T+TDA+GGL LPRL+F+KEGNLLAVTTADNGFKILAN
Sbjct: 600 HFLAAGDDGQIKFWDMENISFITTTDADGGLQTLPRLKFNKEGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLRAVE FEALR+P+ES A+KVS +S + + +P N KVERSSPVRPSPI+NGV
Sbjct: 660 AAGLRSLRAVETHSFEALRSPMESAAIKVSGTSNIVNASPVNLKVERSSPVRPSPILNGV 719
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP +RSM+KPRTVDDV DK KPWQLAEIVD G+CRLVT+P+STDTSSKVVRLLYTNS VG
Sbjct: 720 DPMNRSMEKPRTVDDVIDKTKPWQLAEIVDPGECRLVTLPDSTDTSSKVVRLLYTNSGVG 779
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALG+NG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLEEAVPCIA
Sbjct: 780 MLALGANGIQKLWKWPRNEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIA 839
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 840 LSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIH 899
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQLC+WSIDTWEKRKSV I IP
Sbjct: 900 IYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKSVAIQIP 959
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
GK+PTGDTRVQF++DQ R+LVVHETQLAIYDASKMERI QW PQDA+SAPIS A YSCN
Sbjct: 960 TGKSPTGDTRVQFHSDQTRLLVVHETQLAIYDASKMERIHQWVPQDAISAPISYAAYSCN 1019
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078
SQL++ATF DGN+GVFDAD LRLRC IAPS Y NGSQT +PLVVA HPL+PNQ A
Sbjct: 1020 SQLIYATFSDGNVGVFDADHLRLRCRIAPSAY------NGSQTAHPLVVATHPLDPNQLA 1073
Query: 1079 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1128
+GLTDGSVKV+EP+ESE KWG SPPVDNG+LN R T+SS+TSNHTPDQLQR
Sbjct: 1074 VGLTDGSVKVIEPTESEKKWGTSPPVDNGVLNGRTTSSSTTSNHTPDQLQR 1124
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505795|ref|XP_003521675.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1937 bits (5017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1131 (83%), Positives = 1031/1131 (91%), Gaps = 3/1131 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G+H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGSHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA AN NALAGWMANASASSSVQAAVVTAS+IPVPQNQVS+LK PRTPPT PGM DYQN
Sbjct: 241 AAATANTNALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+Y ++R + SLDDLPRTVA++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSYPAARQASCSLDDLPRTVAMTLHQGSSVTSMDFHPSHPTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEI+LWEL RDRLVSKPFKIWD++ACSLPFQA++ KD PIS SRV WS DGN
Sbjct: 361 LLVGSNNGEISLWELGFRDRLVSKPFKIWDISACSLPFQAAMVKDSPISASRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+ NK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHLNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+++GRKLFNFEGHEA VYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGNLLAVTTAD GFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQTLPHLRFNKEGNLLAVTTADKGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVE+SSPV PSPI+NGVD
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVEKSSPVGPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
T ++ +KPRTV+D D+ KPWQL+EIVD+ QCRLVTMP+STD+SSKVVRLLYTNS G+
Sbjct: 721 TTGQNAEKPRTVEDGVDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGV 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW R+EQNP+GKATAS VPQHW P+SGLLM NDVAGVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQKRITGLAFST LNILVSSGADAQLCVWSIDTWEKRKSV I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPA 960
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK P GDTRVQF+ DQ+R+LV HETQLAIYDASKM+RIRQW PQD L+APIS A YSCNS
Sbjct: 961 GKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNS 1020
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS-PSVLNGSQTVYPLVVAAHPLEPNQFA 1078
QL++ATFCDGN GVFDAD+LRLRC IA STY S P+ L+G+Q+ YP+ +AAHPLEPNQFA
Sbjct: 1021 QLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPPAALSGNQSAYPVAIAAHPLEPNQFA 1080
Query: 1079 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1128
+GLTDGSVKV+EPSESEGKWG SPP+DNGILN R S+S TSN TPDQ QR
Sbjct: 1081 VGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASTSITSNLTPDQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1128 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.993 | 0.991 | 0.704 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.984 | 0.982 | 0.614 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.976 | 0.983 | 0.618 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.344 | 0.525 | 0.350 | 2.3e-86 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.239 | 0.467 | 0.244 | 3.6e-16 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.174 | 0.312 | 0.256 | 6.4e-15 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.236 | 0.195 | 0.263 | 9.7e-11 | |
| MGI|MGI:1916794 | 328 | Wdr5b "WD repeat domain 5B" [M | 0.172 | 0.594 | 0.256 | 6.6e-14 | |
| POMBASE|SPAC343.04c | 507 | SPAC343.04c "WD repeat protein | 0.113 | 0.252 | 0.294 | 1.3e-12 | |
| WB|WBGene00006474 | 376 | wdr-5.1 [Caenorhabditis elegan | 0.170 | 0.510 | 0.257 | 1.6e-12 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4138 (1461.7 bits), Expect = 0., P = 0.
Identities = 802/1138 (70%), Positives = 913/1138 (80%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPVPQNQVSVLKHPRTPPTP-GMVDY 297
P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + I+ +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSI---SPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 954
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQL W+ D+WEK+KS
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSA 954
Query: 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAV 1014
I +P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A
Sbjct: 955 IQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSAS 1014
Query: 1015 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074
YSCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+ P S ++P V+ AHP EP
Sbjct: 1015 YSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM-PQPTPNSAPIFPQVITAHPQEP 1073
Query: 1075 NQFAIGLTDGSVKVMEPSESEGKWGVSPPVDN---GILNXXXXXXXXXNHTP-DQLQR 1128
NQ A+GL+DGSVKV+EPSE +WGV + G N N++ DQ+QR
Sbjct: 1074 NQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3609 (1275.5 bits), Expect = 0., P = 0.
Identities = 706/1148 (61%), Positives = 849/1148 (73%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP-VPQNQVSVLKHPRTPPTPGMVDYQ 298
PT P +P + LKHPRTPPT +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIP----AALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ + G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I T A +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAA-----TSAG-HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 VA-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 946
Query: 943 SIDTWEKRKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK++S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW
Sbjct: 947 NTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060
+++L API+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N +
Sbjct: 1007 AVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN- 1064
Query: 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNXXXXXXXXXN 1120
V+PLV+AAHP EPN FA+GL+DG V + EP ESEGKWGV+PP +NG +
Sbjct: 1065 -VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGA 1123
Query: 1121 HTPDQLQR 1128
DQ QR
Sbjct: 1124 SASDQPQR 1131
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3590 (1268.8 bits), Expect = 0., P = 0.
Identities = 709/1147 (61%), Positives = 850/1147 (74%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P+ ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVPQNQVSVLKHPRTPPTPGMVDYQN 299
PT P Q + LKHPRTPP+ VDY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ---AALKHPRTPPSNSAVDYPS 297
Query: 300 PDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGST 346
D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK L
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 467 CVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
CV TCGDDK IKVW+ + G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
D MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER 705
V+ DN K++AN+ GLR L VEN E+ + I P VER
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSI--------------PM---VER 700
Query: 706 SSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763
+ V P +NG D SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 701 PASVVSIPGMNG-D--SRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRV 757
Query: 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823
+ K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM N
Sbjct: 758 T-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883
DVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
DNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW+
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 936
Query: 944 IDTWEKRKSVTIHIPAGKTPTG--DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 1001
D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW
Sbjct: 937 TDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWP 996
Query: 1002 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT 1061
+++ +API+ A +SC+SQL++ +F D I VF + LRLRC + PS YL S+ N +
Sbjct: 997 VRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN-- 1053
Query: 1062 VYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNXXXXXXXXXNH 1121
V+PLV+AAHP E N FA+GL+DG V + EP ESEGKWGV+PP +NG +
Sbjct: 1054 VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGAS 1113
Query: 1122 TPDQLQR 1128
DQ QR
Sbjct: 1114 ASDQPQR 1120
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| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 2.3e-86, Sum P(2) = 2.3e-86
Identities = 143/408 (35%), Positives = 225/408 (55%)
Query: 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765
+S + P+++ + T SM K V K KP EI D QC + +P+ +
Sbjct: 336 TSSLENVPVVSYLCGTPSSM-KFFFKKTVPRKKKP---NEIKDPSQCNALVLPDCF-SEE 390
Query: 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825
K+ RL Y+ S +LAL + KLW W + QN K P+ P SG M N++
Sbjct: 391 KIARLTYSPSGDYILALAEDATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEM 449
Query: 826 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885
A +++++ C A+ SY+ S +GGKI++F++ F+ + +F SP P +T+ F P D
Sbjct: 450 A-TSVQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD- 505
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
++A+G +D +I I+ + +VK KL+GH ++IT LAFS N+LVSS +D +LC+WS
Sbjct: 506 -LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTK 564
Query: 946 TWEK--RKSVTIHI--PAGKTPTG-DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+W K K+ T + T T +QF+ Q+ +LVVH+ + +Y+ ++ QW
Sbjct: 565 SWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQW 624
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060
P DA I+ A YS + ++++ F G+I + D+ T C I +++ S N S
Sbjct: 625 IP-DASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSNISL 683
Query: 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPV-DNG 1107
VYP VVAAHP PNQ + GL++G V V++P S G WG + P+ DNG
Sbjct: 684 EVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPLEDNG 730
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| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 73/299 (24%), Positives = 127/299 (42%)
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPF---QASIFKDVPISV--SRVAWSPDGNYVGVA 424
++W L + R S + D+ S F S K P+ V S + +SP + +
Sbjct: 207 SMWRLVLLLRRKSSDSDLLDLVRDSYRFFLQNISAIKCAPLQVYASALVFSPADSLIRKL 266
Query: 425 FTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
F K + D+ H ++ H AV +++++ ++LL + DD+ +K+
Sbjct: 267 FGKE--EPNWIETKPDVANHWSPCLQALEGHEAAVLSVSYSHDSRLLA--SASDDRTVKI 322
Query: 480 WEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
W+ +G EGH V S+ H + ++A D +K W DT + + G
Sbjct: 323 WDTETGSLQHTLEGHSDLVRSVIFSHDSRL---LASASDSTVKIW--DTGTGSLQHTLEG 377
Query: 539 H--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596
H W ++++S D S+L + S DS + W+ G+++ T G R V+ F
Sbjct: 378 HRDWVRSVIFSHD-SQLLA---SASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVI-FSHD 432
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ +DS +K WD L T EG + + FS + LLA + D +I
Sbjct: 433 SQLLASASDDSTVKIWDT-GTGSLQHT-LEGHRDWVRSVIFSHDSRLLASASDDRTVRI 489
|
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| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 56/218 (25%), Positives = 100/218 (45%)
Query: 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E V GDW + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L ++L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQ 177
+ S ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 SLNWQHQLCK-NPRA---NPDIKTLFTDHTCSPPNGPL 211
++ Q Q C + A N + +L TDH C+ P+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPM 304
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| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 76/288 (26%), Positives = 126/288 (43%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
K+W+ L FK + + VA+SPDG ++ + I+L+ A S +L+Q
Sbjct: 985 KLWNSTTGELQ---QTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATS-ELQQ-- 1038
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504
++ H +V+ +AF+ +K L + D IK+W+ +G EGH V S+
Sbjct: 1039 SLEDHSRSVHAVAFSPDDKQLASSSL--DSTIKLWDSATGELQRTLEGHSQGVRSVT--F 1094
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + + S + DG IK W T + W ++ +S DG +L S G DS
Sbjct: 1095 SPDGKLLASNSYDGTIKLWNPLTGELQQTLTGRSDWVDSVAFSPDGKQLAS-GYY---DS 1150
Query: 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTST 623
+ W+ + G + +T G + VV F + LA G D K WD +L
Sbjct: 1151 TIKLWDSATGELLQTLEGHSDRIQSVV-F-SPDGKLLASGSYDQTAKLWDPATGELLQIF 1208
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
EG + + FS +G LLA ++ K+ G L+ + +P
Sbjct: 1209 --EGHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTG-ELLQTLNDP 1253
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| MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++S V +SP+G ++ + LI ++ G+ D + H ++D+A++ + L
Sbjct: 41 AISSVKFSPNGEWLASSAADALIIIW---GAYDGNCKKTLYGHSLEISDVAWSSDSSRL- 96
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVW++ SG+ L +GH V+ C + + I S + D +K W
Sbjct: 97 -VSASDDKTLKVWDMRSGKCLKTLKGHSDFVFC-CDFNPPS-NLIVSGSFDESVKIWEVK 153
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ +GS + S G S DG + W+ + G RT A
Sbjct: 154 TGKCLKTLSAHSDPISAVNFNCNGSLIVS-G-SYDGLCRI--WDAASGQCLRTLADEGNP 209
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + L D+ +K WD
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWD 236
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| POMBASE|SPAC343.04c SPAC343.04c "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 40/136 (29%), Positives = 71/136 (52%)
Query: 7 ELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFTKV 63
E++ L+LQFL + + ES+ LEKE+G ++K ++ V GDW E S ++
Sbjct: 10 EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAFS-IMQL 68
Query: 64 DDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSN 123
D + F ++KQ+ LE +A+ +L N + FN+E + ++ +L +N
Sbjct: 69 RDESKRKEAQFLLQKQRCLELARSGAICEAIYVLQNFES--TDFNKEKERLVSIILESNN 126
Query: 124 FRENEQLSK--YGDTK 137
NE ++K YG+T+
Sbjct: 127 KSNNELITKNGYGNTR 142
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| WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 54/210 (25%), Positives = 95/210 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S +SP G Y+G + +++++ + + + H VND+A++ ++ C
Sbjct: 89 SISSAKFSPCGKYLGTSSADKTVKIWNM---DHMICERTLTGHKLGVNDIAWSSDSR--C 143
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VV+ DDK +K++E+ + R +GH Y C + + S + D ++ W
Sbjct: 144 VVSASDDKTLKIFEIVTSRMTKTLKGHNN--YVFCCNFNPQSSLVVSGSFDESVRIWDVK 201
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVE-WNESEGTIKRTYAGF 583
T G + P H + + ++ DGS L + G S DG LV W+ + G +T
Sbjct: 202 T-GMCIK-TLPAHSDPVSAVSFNRDGS-LIASG-SYDG---LVRIWDTANGQCIKTLVDD 254
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA DS +K WD
Sbjct: 255 ENPPVAFVKFSPNGKYILASNLDSTLKLWD 284
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7396 | 0.9689 | 0.9664 | no | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7716 | 0.9804 | 0.9981 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XIII000057 | hypothetical protein (1124 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1128 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-31
Identities = 84/320 (26%), Positives = 125/320 (39%), Gaps = 46/320 (14%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V + F P + LL GS +G I K+WD+ L
Sbjct: 8 HTGG-VTCVAFSPDGK-LLATGSGDGTI----------------KVWDLETGELLRT--- 46
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
K V VA S DG Y+ + I+L+ +R + H V+ +AF+
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS- 102
Query: 462 PNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520
P+ + + + DK IKVW++ +G+ L GH V S+ F+ S++ DG I
Sbjct: 103 PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTI 159
Query: 521 KAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
K W D + GH ++ +S DG +L S + DG L W+ S G
Sbjct: 160 KLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKL--WDLSTGKCLG 213
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---VNILTSTDAEGGLPNLPRL 635
T G N V F + ED I+ WD+ V L+ L
Sbjct: 214 TLRGHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SL 267
Query: 636 RFSKEGNLLAVTTADNGFKI 655
+S +G LA +AD +I
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-22
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L+ ++ H S V S+ F P + +L S + I K+
Sbjct: 78 WDLETGECVRTLTGHT-SYVSSVAFSPDGR-ILSSSSRDKTI----------------KV 119
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-- 445
WD+ + + V+ VA+SPDG +V + I+L+ DLR
Sbjct: 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV 170
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPH 503
+ H G VN +AF+ + L + D IK+W+LS K GHE V S+
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560
+ + S + DG I+ W D GH T++ +S DG RL S
Sbjct: 229 PDGYL--LASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 23/270 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNK 464
V+ VA+SPDG + I+++ LR H+ V A D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----- 65
Query: 465 LLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DK I++W+L +G + GH + V S+ + + + S++ D IK W
Sbjct: 66 ---LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVW 120
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
D + GH + F +S+DG L W+ G T G
Sbjct: 121 --DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATLTGH 176
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643
+ N V F L+ D IK WD+ L + N + FS +G L
Sbjct: 177 TGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPDGYL 233
Query: 644 LAVTTADNGFKI--LANAIGLRSLRAVENP 671
LA + D ++ L +++L N
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 2e-18
Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 30/312 (9%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
++ S+ F P + LLL GSS+G I LW+L ++L+ S+
Sbjct: 66 DSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 405 VPISVSRVAW-SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463
SVS++A SPDGN + +A + + + S + ++ H +V LAF P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPD 166
Query: 464 KLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522
L D IK+W+L +G+ L GH PV S+ + I S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRL 225
Query: 523 WLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTY 580
W T G + GH +S DGS L S D + W+ S ++ RT
Sbjct: 226 WDLST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTL 280
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
+G V F + D ++ WD++ +L+S +G + L FS +
Sbjct: 281 SGHSSSVLS-VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 641 GNLLAVTTADNG 652
G+LL +D+G
Sbjct: 340 GSLLVSGGSDDG 351
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSI-- 500
+ H G V +AF+ KLL T D IKVW+L G L +GH PV +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGT 558
++ S + D I+ L+D GH + +++ +S DG L S
Sbjct: 60 SADGT----YLASGSSDKTIR--LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS- 112
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVG-EDSQIKFWDMD 615
D + W+ G T G ++ V V F F+A +D IK WD+
Sbjct: 113 ---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLR 165
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + G + + FS +G L +++D K+
Sbjct: 166 TGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.7 bits (200), Expect = 6e-16
Identities = 81/344 (23%), Positives = 133/344 (38%), Gaps = 35/344 (10%)
Query: 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGST-- 346
TPG + H + + L +P + + SS T L DL +S G T
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
V S+ F P L+ GSS+G I LW+L+ L S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL------------------RSTLSGHS 242
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
SV ++SPDG+ + + I+L+ S+ L + + H +V +AF+ KLL
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFSPDGKLL 299
Query: 467 CVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ D +++W+L KL +GHE PV S+ + + + DG I+ W
Sbjct: 300 --ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLW 356
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
T + ++ +S DG + S T D + W+ S G++ R G
Sbjct: 357 DLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH 411
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + F + D+ I+ WD+ S +G
Sbjct: 412 TSRVT-SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 834 VPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892
V C+A S + + + +G G I ++++ T +++ T +A D +A G+
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952
D TI ++++ E L GH ++ +AFS IL SS D + VW ++T + +
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 953 VTIHIPAGKTPTGDTR-VQFNADQVRMLVV---HETQLAIYDASKMERIRQWTPQDALSA 1008
+ H T V F V + + ++D + + T +
Sbjct: 131 LRGH-------TDWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTG 178
Query: 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041
++ +S + + + ++ DG I ++D T +
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.4 bits (189), Expect = 1e-14
Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 38/329 (11%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L + + +V S+ F P + L S +G I LW+L L
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL------- 191
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
S VS +A+SPDG + + I+L+ S S
Sbjct: 192 ------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL--STGKLLRST 237
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHH 504
+ H +V +F+ LL + D I++W+L S L GH + V S+
Sbjct: 238 LSGHSDSV-VSSFSPDGSLL--ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDG 562
+ + S + DG ++ W +T GH +++ +S DGS L S G+
Sbjct: 295 DGKL--LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--- 349
Query: 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622
D + W+ G +T + V F + D ++ WD+ ++L +
Sbjct: 350 DGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651
D + L FS +G LA ++DN
Sbjct: 408 LDGHTSR--VTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89
F K E + GDWDE ++LS R S K+ FE+RKQK+LE + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGK 55
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + ++S++ G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
G+ED TI ++++R E L GH +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+ V +A S + ++V S++ G I L+++ T K + T +AF P D +
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLL 193
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
+ D TI ++++ + L+GH+ + +AFS +L S D + VW + T E
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253
Query: 950 RKSVTIH 956
++++ H
Sbjct: 254 VQTLSGH 260
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 67/260 (25%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + + S++ I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
++D TI ++++R + + L GH + +AFS L+SS +D + +W + T
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-- 209
Query: 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 1009
+ L HE
Sbjct: 210 ------------------------KCLGTLRGHE------------------------NG 221
Query: 1010 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT-VYPLVVA 1068
++ +S + L+ + DG I V+D T L+G V +A
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV-----------QTLSGHTNSVT--SLA 268
Query: 1069 AHPLEPNQFAIGLTDGSVKV 1088
P + + A G DG++++
Sbjct: 269 WSP-DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/217 (19%), Positives = 99/217 (45%), Gaps = 14/217 (6%)
Query: 834 VPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891
V +A S + ++++ G I L+++ T K++ + +S S +F P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 892 TEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
+ D TI ++++R + L GH + +AFS +L S +D + +W ++T +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 951 KSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSA 1008
S+T+ G + + F+ D ++ + + ++D + ++
Sbjct: 320 SSLTLKGHEGPV----SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS---- 371
Query: 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045
+ +S + ++V + DG + ++D T L +
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
LKGH +T +AFS +L + D + VW ++T E +++ H V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG------PVRDVA 58
Query: 971 FNADQVRMLVVHE-TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029
+AD + + ++D E +R T ++ +S +S + +++ ++ D
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDK 115
Query: 1030 NIGVFDADTLRLRCYIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQF-AIGLTDGSVK 1087
I V+D +T + + L G + V VA P F A DG++K
Sbjct: 116 TIKVWDVETGKCL-----------TTLRGHTDWVN--SVAFSP--DGTFVASSSQDGTIK 160
Query: 1088 V 1088
+
Sbjct: 161 L 161
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (147), Expect = 1e-09
Identities = 78/427 (18%), Positives = 151/427 (35%), Gaps = 38/427 (8%)
Query: 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
S G + F L+ D IK WD
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWD 93
Query: 614 MDN-VNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670
+DN ++ S + S +GN LLA ++ D K+ + + +R +E
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153
Query: 671 PPFEALRTPIESVAL----KVSASSAVSSGTPANCKVERSSPVR----PSPIINGVDPT- 721
+ S+A K+ AS + GT + P+ + ++ + +
Sbjct: 154 HS-----ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208
Query: 722 -------SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE------STDTSSKVV 768
S S D + D++ + S+D + ++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268
Query: 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828
L ++S + L+ S+ V + + SG + + + W +G L + +
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV--RLWDLETGKL-LSSLTLK 325
Query: 829 NLEEAVPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886
E V ++ S + S ++S G I L+++ T K + T + ++F P D
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSP-DGR 383
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
+++ G+ D T+ ++++ + L GH R+T L FS L S +D + +W + T
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Query: 947 WEKRKSV 953
K S
Sbjct: 444 SLKSVSF 450
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT--WSLDDLPRTVAV-SLHQGSTVISMDFHPSH 356
H + + +P V SS W L + VA + H G V S+ F P
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGE-VNSVAFSPD- 188
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
LL SS+G I LW+L+ +L + V+ VA+SP
Sbjct: 189 GEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHEN-------GVNSVAFSP 229
Query: 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
DG + I+++ + H +V LA++ + + D
Sbjct: 230 DGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWS--PDGKRLASGSADGT 284
Query: 477 IKVWE 481
I++W+
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLEEEKFKESVHKLEKESGF 34
EL LIL++L ++E+ L+KESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
E+ LKGH +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
++ LKGH +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVR-----VDEVKSK---LKGHQKRITGLAFS-TSLN 928
L F+P + I+A G+ED TI ++ + V E+K LKGH+K+I+ + ++ +
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139
Query: 929 ILVSSGADAQLCVWSIDTWEKR 950
I+ SSG D+ + +W I+ EKR
Sbjct: 140 IMCSSGFDSFVNIWDIEN-EKR 160
|
Length = 568 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 31/221 (14%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
S + ++ DS + + ++ L+GH+ IT +AFS +L+S
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGS 84
Query: 935 ADAQLCVWSID-------TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987
+D + +W +D + E ++ A +P G++ + ++ + + +
Sbjct: 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-- 142
Query: 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047
+ + IR + S A L + DG I ++D T + +A
Sbjct: 143 ----TPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 1048 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088
T +A P A G +DG++++
Sbjct: 197 HTD------------PVSSLAFSPDGGLLIASGSSDGTIRL 225
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
+ H G V +AF+ LL + DD ++VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-------KLKGHQKRITGLAFSTS-LNI 929
+AF+P D + +ED TI + + + + L+GH K++ ++F S +N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 930 LVSSGADAQLCVWSIDT 946
L S+GAD + VW ++
Sbjct: 141 LASAGADMVVNVWDVER 157
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1128 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.72 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.67 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.61 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.56 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.48 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.44 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.4 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.3 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.24 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.13 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.09 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.01 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.0 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.88 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.85 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.84 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.79 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.75 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.71 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.68 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.66 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.62 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.61 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.6 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.58 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.57 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.57 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.51 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.5 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.5 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.47 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.43 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.41 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.4 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.39 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.36 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.32 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.29 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.29 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.28 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.23 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.18 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.16 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.16 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.09 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.08 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.01 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.94 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.93 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.88 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.87 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.87 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.87 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.85 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.83 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.83 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.82 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.81 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.78 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.78 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.74 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.7 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.65 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.58 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.58 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.55 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.52 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.52 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.52 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.51 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.51 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.46 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.46 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.37 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.34 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.29 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.28 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.25 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.06 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.96 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.94 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.89 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.89 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.88 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.79 | |
| PRK10115 | 686 | protease 2; Provisional | 96.78 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.71 | |
| PRK10115 | 686 | protease 2; Provisional | 96.67 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.64 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.63 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.59 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.56 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.54 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.49 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.48 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.41 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.4 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.25 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.24 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.22 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.22 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.19 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.14 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.14 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.11 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.98 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.93 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.92 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.82 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.81 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.79 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.74 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.71 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.63 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.62 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.42 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.25 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.22 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.19 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.17 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.14 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.95 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.92 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.88 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.68 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.66 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.29 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.27 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.15 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.09 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.08 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.94 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.85 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.85 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.71 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.69 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.27 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.2 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.03 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.02 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.9 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 92.79 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 92.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.18 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.14 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.14 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.13 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.09 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 91.97 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.85 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.71 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.68 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.59 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.59 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.44 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.36 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 91.06 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.99 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.42 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.38 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.18 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.99 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.94 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.45 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 89.43 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 89.15 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.54 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 88.39 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 88.36 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.31 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.3 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 88.23 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.48 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 87.47 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 87.2 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.71 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 86.71 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.35 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 86.13 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.99 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.95 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.89 | |
| PLN02153 | 341 | epithiospecifier protein | 84.72 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.48 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.4 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.21 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.94 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 83.33 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 83.29 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.98 | |
| PLN02153 | 341 | epithiospecifier protein | 82.84 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 82.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 82.73 | |
| PLN02193 | 470 | nitrile-specifier protein | 82.4 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=542.21 Aligned_cols=491 Identities=21% Similarity=0.305 Sum_probs=415.3
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC---HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1128)
+.|++|++.|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+...++.+... +.|+++||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e-a~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE-AMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH-HHHHHHHHHH
Confidence 569999999999999999999999999999885 899999999999999999999886555444444 9999999999
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccccccc
Q 001190 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL 161 (1128)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1128)
||++..+...+|+.+||+++.++ ..+.+++++|+.-|..++.....+..........|.+|+++|++.|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999988 568999999988766543332222111122456799999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 001190 162 AFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPT 241 (1128)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1128)
+|++||++||+||+++|+..|.||| +.+..|||.||.|.+.+ +|+ .+.+++..
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~q--------------ip~-qt~qil~~------- 222 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRLQ--------------IPS-QTWQILQD------- 222 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCccc--------------CCc-hhhhhHhh-------
Confidence 9999999999999999999999999 57779999999999976 554 23333333
Q ss_pred ccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCcccCCCChHHHhhhcCCCCCCCccccc
Q 001190 242 AAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYS 321 (1128)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1128)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCcccccee
Q 001190 322 SSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (1128)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1128)
|.++||-+.||++|+ +||+++.|.+..||++.....+. ..++
T Consensus 223 ---------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~~t 264 (519)
T KOG0293|consen 223 ---------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LKKT 264 (519)
T ss_pred ---------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------eeee
Confidence 556788888899999 78999999999999986654421 1245
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.||..+|..+.||||.++|++|+.|..+.+||+.+|+....+. .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 89999999999999999999999999999999999999876432 24678999999999999 799999999999999
Q ss_pred cCCCeEEEecCCC-CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 ~~g~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+|+.+..+++-. ..|.++++.+ ||+++++.+.|..|++++.++..... +.....+|+++++|.||+++++.-
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL--- 414 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL--- 414 (519)
T ss_pred CCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc---
Confidence 9999988888765 4589999865 78999999999999999987655443 444566899999999999998876
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCc-eeEEEEe-CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.+..+++||+...+.++.+.||..+. +-.-||. .+..++++||+|+.|+||+..+++++..+.+|. ..|+|++|+
T Consensus 415 -~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswN 491 (519)
T KOG0293|consen 415 -QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWN 491 (519)
T ss_pred -ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecC
Confidence 48899999999999999999998743 2223454 455899999999999999999999999998665 489999999
Q ss_pred C-CCCEEEEEEcCCcEEEEEccc
Q 001190 639 K-EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 639 p-~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
| +..++|++++||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 9 667899999999999997653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=477.82 Aligned_cols=490 Identities=20% Similarity=0.307 Sum_probs=412.3
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC----HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHh
Q 001190 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1128)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1128)
-..+|||||+|||+|+.+++++++||+|+++++| ++.|.+.|.+|+||.++..+++|+++. +-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHH
Confidence 4569999999999999999999999999999998 899999999999999999999996664 478899999
Q ss_pred HHhHhhccCCHHHHHHHHHh--hcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccc
Q 001190 80 KYLEALDRQDKAKAVDILVN--DLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLF 157 (1128)
Q Consensus 80 ~~~ell~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1128)
..|||+|.++...|..+||+ .+.-|+..+|++|-+|+.||..+++++.+.|.+ .+.+++|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 99999999999999999987 477778899999999999999999999999875 56778888899888887766
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 001190 158 RDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSP 237 (1128)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1128)
+||+||+.||.|||+||..+ +.+|++++++ .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------L 185 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------L 185 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------e
Confidence 89999999999999999775 3456666665 5
Q ss_pred CCCCccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCcccCCCChHHHhhhcCCCCCCCc
Q 001190 238 FPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEE 317 (1128)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1128)
|+..++.-. ..+
T Consensus 186 FRGkAA~K~-~~E------------------------------------------------------------------- 197 (508)
T KOG0275|consen 186 FRGKAAMKD-QEE------------------------------------------------------------------- 197 (508)
T ss_pred ccchhhhhh-hHh-------------------------------------------------------------------
Confidence 555532111 000
Q ss_pred ccccCCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccc
Q 001190 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (1128)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1128)
...+......+.++.++.+.|..|||||+ +|++||.||.|.+||+.+|+......++
T Consensus 198 -----------e~~Pt~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ----------- 254 (508)
T KOG0275|consen 198 -----------ERYPTQLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ----------- 254 (508)
T ss_pred -----------hhchHHhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh-----------
Confidence 00011112234556778899999999999 7899999999999999999876542221
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
....+.-++.+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+. ..|+..|+++.|+.|+. .+.+++.|.++
T Consensus 255 Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tv 330 (508)
T KOG0275|consen 255 AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTV 330 (508)
T ss_pred hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceE
Confidence 112466789999999999999999999999999999999999998632 38999999999999999 69999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC--CeEEEEEEcCCC-CeE
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG-SRL 553 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g-~~l 553 (1128)
++.- .+|+++..++||...|+...|.+ +|..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 9999 99999999999999999999855 78999999999999999999999888776543 478888877754 455
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEecccc--CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++|. ..+++++.++ .|+.++.|.... ++..-+++.+|.|.++++.++|+.++.|...+|.+..++..+.. .
T Consensus 409 iVCN----rsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--d 481 (508)
T KOG0275|consen 409 IVCN----RSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--D 481 (508)
T ss_pred EEEc----CCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--c
Confidence 6654 3788999887 477788776432 23455678999999999999999999999999999999887655 6
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+..++-+|..+.+++-+.||.+++|.
T Consensus 482 vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-56 Score=473.53 Aligned_cols=572 Identities=15% Similarity=0.237 Sum_probs=474.3
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++|+++|+ .|+|.. ...|.+-|+.++... .. .-.+....+++++.+||+.+|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 677764 346888999998873 21 1334567899999999999999999999
Q ss_pred eEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCC
Q 001190 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~ 506 (1128)
.+++|++.+|+.++. +.. |++||.-++|.|.|. ++++|+.|+.++||| ..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~irs---wKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRS---WKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhHh---HhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 999999999988874 555 999999999999997 899999999999999 8899999999999999999999988
Q ss_pred CccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC
Q 001190 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1128)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1128)
+...|++|..|+++++||+..... ......|...|+++.|++|+..+++++. |..+.+||+.+-+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999985444 6678889999999999999999999985 8999999998777777777654
Q ss_pred CceeEEEEeCC-----CCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.+.++.+-++ +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 3666667666 67999999999999999999988776654432 2356666666556666777788999998766
Q ss_pred CccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCc
Q 001190 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1128)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 740 (1128)
. .+.+.+.+
T Consensus 313 l-~i~k~ivG---------------------------------------------------------------------- 321 (775)
T KOG0319|consen 313 L-TIVKQIVG---------------------------------------------------------------------- 321 (775)
T ss_pred c-EEehhhcC----------------------------------------------------------------------
Confidence 5 33332222
Q ss_pred ceeEEEeeCCceeEEEecCCCCCcccEEEEEEe-cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc
Q 001190 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1128)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1128)
..+.|..+.|- |+.+++++++..+.+|+|+.....
T Consensus 322 ----------------------~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------------------- 357 (775)
T KOG0319|consen 322 ----------------------YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---------------------- 357 (775)
T ss_pred ----------------------CchhheeeeecCCccceEEEEeCCCceEEEecCCCc----------------------
Confidence 33445555553 566788888889999998654321
Q ss_pred cccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 820 LMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 820 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
+ ..+.+ |.+.|.++....+|-+|++++ |.++++|.++.+ -++....+|...|.+++++.....++++++.|
T Consensus 358 c--~ii~G--H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 358 C--QIIPG--HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred e--EEEeC--chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 1 13444 999999999888889999999 999999988433 24556678999999999998777899999999
Q ss_pred CcEEEEecccceee---------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 895 STIHIYNVRVDEVK---------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 895 g~v~iwd~~~~~~~---------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+++++|++...+.. .+...|...|++|+++|+.+++||||.|++.+||++..... .....+|. ..
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l-----~~vLsGH~-RG 507 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL-----LGVLSGHT-RG 507 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE-----EEEeeCCc-cc
Confidence 99999999863211 13457999999999999999999999999999999995543 44455666 88
Q ss_pred ccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 966 DTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
+.+|.|+|..+.+++++ |.+|+||.++++.+++.+.+| ...|..+.|-.+|+.|++++.||-|++|++++++++++
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 99999999999999975 999999999999999999887 89999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
+. .|...+-+++-+| +..++++|+.||.|.+|.=.+.
T Consensus 585 lD------------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 LD------------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hh------------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 99 5666667788888 5779999999999999964443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=462.84 Aligned_cols=539 Identities=17% Similarity=0.248 Sum_probs=449.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC-CCcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 421 (1128)
..+.+++++.+||+. +|++++..+.+++|++.+|+.+.. .+. |++||.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 677899999999988 778899999999999999987653 444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEEEecCCCCCeEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEAPVYS 499 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~~~~~h~~~v~~ 499 (1128)
|+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-.+.+|++|..|+++++|| .++. ++..+..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998776 589999999999999997766799999999999999 5444 47888999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-----CCeEEEeeeccCCCceEEEEeCCCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
++|.+ |+..+++++.|..+.+||+...+....+.... .+-++.+-++ |.++++.| +++.+++||..++
T Consensus 198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~~~~~~~~~TaG----~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREELGGKGEYIITAG----GSGVVQYWDSESG 270 (775)
T ss_pred eeecc--CCceEEEeccCcEEEEeehhhhhhhheechhh-heeeEEEechhcCCcceEEEEec----CCceEEEEecccc
Confidence 99976 57899999999999999996555544443322 4566666666 66888887 5999999999999
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE-cCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i 653 (1128)
+++..........+..+...+....++..+.|..+.++|.++.++...+.+.. ..|..+.| .|+.++|++++..+.+
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCce
Confidence 88776655433345555566666788888899999999999999988887543 37888876 5688999999999999
Q ss_pred EEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
++++..+....
T Consensus 349 r~y~~~~~~c~--------------------------------------------------------------------- 359 (775)
T KOG0319|consen 349 RLYTLPTSYCQ--------------------------------------------------------------------- 359 (775)
T ss_pred EEEecCCCceE---------------------------------------------------------------------
Confidence 99976553110
Q ss_pred CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
-+ .||...|.++....+|-.+++++.|.++++|.++.+..
T Consensus 360 ----------------------ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~--------------- 399 (775)
T KOG0319|consen 360 ----------------------II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS--------------- 399 (775)
T ss_pred ----------------------EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---------------
Confidence 01 34889999999888888999999999999998742210
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCC-CeEEEEe-CCeEEEEECCCceE-----E----EEeeCCCCCeeEEEEcC
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKV-----M----TTFMSPPPASTFLAFHP 882 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~-----~----~~~~~~~~~v~~l~~s~ 882 (1128)
........ ..|...|.+++++..+ .++++++ |.++++|++...+. . .+...|...|+|++++|
T Consensus 400 ----~~~~~a~~--~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 400 ----KSLCVAQA--NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ----hhhhhhhh--cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 01111112 2399999999998766 5778887 89999999976221 1 12346999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC
Q 001190 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1128)
Q Consensus 883 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1128)
+.+++|+|+.|++.+||+++.+....++.||+..|.+|.|++..+.++|+|.|++|+||.+++..+++++. +|.
T Consensus 474 -ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-----GH~ 547 (775)
T KOG0319|consen 474 -NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-----GHT 547 (775)
T ss_pred -CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-----Ccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998866554 444
Q ss_pred CCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 963 PTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
..|..+.|-.+|+.|+++ .||-+++|++++..++..+..| ...|++++-++++.+++||+.||.|.+|.=.|
T Consensus 548 -~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 548 -SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 889999999999999985 5999999999999999998876 89999999999999999999999999997555
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=413.17 Aligned_cols=566 Identities=14% Similarity=0.219 Sum_probs=445.5
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
-.|.|..++.+. ...|.+-+++..... .++.+|...++-..|||.|-|+|+|...|+|+
T Consensus 26 ~dpkgd~ilY~n--Gksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~vR 84 (603)
T KOG0318|consen 26 GDPKGDNILYTN--GKSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVR 84 (603)
T ss_pred cCCCCCeEEEeC--CCEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCcEE
Confidence 457777787764 467888888776543 24888999999999999999999999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCCeEEEecCCCCCeEEEeccCCCC
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~ 507 (1128)
|||....+.+ ...+++.-.++|.+++|+.|+++ ++..++. |.+.+|| +|..+-.+.||...|+++.|-|+..
T Consensus 85 IWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 85 IWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCCc
Confidence 9998774433 22356778899999999999995 4444432 3567777 7777889999999999999987754
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec---ccc
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GFR 584 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~ 584 (1128)
-++++|++|+.|-+|+-...+-...+..|...|.++.|+|||.++++++. |+.+.+||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCcc
Confidence 58999999999999987777777778888899999999999999999985 9999999999999999998 676
Q ss_pred CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC-CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcc
Q 001190 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
+ .|..++|+||+.++++++.|.+++|||+.+.+++.++...... .....+.|- ...|++.+.+|+|.+++.....
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~- 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS- 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-
Confidence 6 8999999999999999999999999999999999988765431 122344454 5588899999999998876552
Q ss_pred ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001190 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (1128)
..+.+
T Consensus 312 ~~~~i--------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 312 VLKVI--------------------------------------------------------------------------- 316 (603)
T ss_pred hhhee---------------------------------------------------------------------------
Confidence 22111
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1128)
.||...|+++..++|++++++++.||.|.-|+...+.. .
T Consensus 317 -----------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~ 355 (603)
T KOG0318|consen 317 -----------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS------------------------D 355 (603)
T ss_pred -----------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc------------------------c
Confidence 34889999999999999999999999999998654321 1
Q ss_pred cccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE--eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
.+.+..|...|.+++.+..+.++.++-|+++++.++........ ++- .....+++..+ ++.+++..+.++-+.+=|
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEec
Confidence 12223489999999998888888777799999998864433221 121 22234888888 766766666555444433
Q ss_pred cccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 902 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
...-. +.. -.-...+++++|++..++.|+.|+.|+||.+..++....... ..|. .+++.++||||+.+|+++
T Consensus 434 ~~~~~---~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~-a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 434 QTKVS---SIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHR-AAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CCcce---eec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---eccc-CCceEEEECCCCcEEEEe
Confidence 33221 111 223467899999999999999999999999998764332222 1222 889999999999999999
Q ss_pred e-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 982 H-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 982 ~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+ .+.+.+||+.+.+....... .|...|.+++|||+.+++|+|+-|.+|.||+++.......+. .+|
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH 572 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAH 572 (603)
T ss_pred ccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----------ccc
Confidence 7 89999999998877332222 248999999999999999999999999999999877665555 467
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
...+..+.|-. +..+++.+.|-.|++|.+.
T Consensus 573 ~~gVn~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEec--CceEEeccCcceeEEeccc
Confidence 77789999974 6899999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=426.40 Aligned_cols=581 Identities=17% Similarity=0.286 Sum_probs=461.5
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
-.+.|++||..+ ++ ...+.|.++|+..++-.. ..-.+...|++++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~sv-iS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSV-IS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEE-Ee-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 357899999844 33 467899999998766432 133477899999999999999999999
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC---------eEEEecCCCCCeE
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---------KLFNFEGHEAPVY 498 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~---------~~~~~~~h~~~v~ 498 (1128)
|.+.+-++.....+..+ ..+.+|.++.|||||+ ++|.|. .+.+.||...|. ..+++.||...|.
T Consensus 77 g~~~lvs~~~r~Vlh~f----~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHRF----NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEEE----eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 99988888775544321 2467899999999999 555554 688999993332 2366789999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC---
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--- 573 (1128)
++.|+. |.++|++|+.|-.+++|+++..+. ...+.+|...|.+.-|..+...+++.+ .||.+.+|....
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS----KDGALFVWTCDLRPP 223 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe----cCceEEEEEecCCCc
Confidence 999965 678999999999999999988777 456778888999999999999999988 499999997761
Q ss_pred --------------------Cce-----e-----eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 574 --------------------GTI-----K-----RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 574 --------------------~~~-----~-----~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
++. . +.+-......+.+.+|++..+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 111 0 0111112236888999999999999999999999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcC-CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
....+ +|..++|+..|.+||.|+.. |.+.||+..+..-.++
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------ 345 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------ 345 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceeee------------------------------------
Confidence 86544 79999999999999999864 7888998765411110
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
. .+|...+++++++|||+++++|
T Consensus 346 ------------------------------------------------------Q---QgH~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 346 ------------------------------------------------------Q---QGHSDRITSLAYSPDGQLIATG 368 (893)
T ss_pred ------------------------------------------------------c---cccccceeeEEECCCCcEEEec
Confidence 0 3488999999999999999999
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 861 (1128)
+.||.|++||. .+|.+.. .+.. |...|+.+.|+..|+.+++++ ||+|+.||+..
T Consensus 369 ~eDgKVKvWn~----------------------~SgfC~v-TFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 369 AEDGKVKVWNT----------------------QSGFCFV-TFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cCCCcEEEEec----------------------cCceEEE-Eecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 99999999964 4444443 2333 999999999999999999999 99999999999
Q ss_pred ceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCC-cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcE
Q 001190 862 FKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939 (1128)
Q Consensus 862 ~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i 939 (1128)
++..+++..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|||+++|++|
T Consensus 424 YrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred cceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 999999986544 467899999 889998888775 79999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCC-------------
Q 001190 940 CVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQD------------- 1004 (1128)
Q Consensus 940 ~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~------------- 1004 (1128)
|+||+-.... ..++... ..+..++|+|||+.++++. ||.|.+||+..+.....+.+..
T Consensus 503 RiW~if~s~~~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t 575 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT 575 (893)
T ss_pred EEEEeeccCceeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence 9999976422 2222222 6789999999999999976 9999999998776654333221
Q ss_pred ----CCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC---------------------------
Q 001190 1005 ----ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP--------------------------- 1053 (1128)
Q Consensus 1005 ----~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------- 1053 (1128)
+.....+.++||+||.+|++|+..+.|++|++.++-++.+++-......
T Consensus 576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~ 655 (893)
T KOG0291|consen 576 AENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESD 655 (893)
T ss_pred hhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccc
Confidence 1257789999999999999999999999999999888877762111000
Q ss_pred ----------ccc----C---CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1054 ----------SVL----N---GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1054 ----------~~~----~---~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++. + ..-.+.++.+.|+| .++-+++++..|- .|+.+.
T Consensus 656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsld 709 (893)
T KOG0291|consen 656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSLD 709 (893)
T ss_pred ccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEecC
Confidence 000 0 01136689999999 4999999999885 445553
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=410.52 Aligned_cols=537 Identities=17% Similarity=0.268 Sum_probs=427.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
+..--+|...|+-+.|||.|- ++|+|...|.|+|||....+.+.... +.--.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCC
Confidence 444446899999999999997 88999999999999987755443322 333567999999999
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 417 dg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
|+++|++.++. |.+.+|| +|..+. .+.||...|++++|-|.-.. +++||++|++|.+|+ ..-+-..++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999988753 3455555 454444 58899999999999988766 899999999999999 6667778888
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.|...|+++.|+| ||.++++++.||+|.+||-.+++....+. .|.+.|.+++|+||+..+++++. |.+++|
T Consensus 188 ~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KI 261 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKI 261 (603)
T ss_pred ccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEE
Confidence 9999999999977 68999999999999999999999888887 78889999999999999999985 999999
Q ss_pred EeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 569 WNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
||+.+.++++++..... ..+. +-|. ...|++.+.+|.|.+++......+..+.+| ...|+++..+|++.+|+
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIY 336 (603)
T ss_pred EEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEE
Confidence 99999999999875543 1233 3343 678999999999999999999988888755 55899999999999999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+|+.||.|.-|+..++.... +
T Consensus 337 SgsyDG~I~~W~~~~g~~~~--~--------------------------------------------------------- 357 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDR--L--------------------------------------------------------- 357 (603)
T ss_pred eeccCceEEEEecCCccccc--c---------------------------------------------------------
Confidence 99999999999987662100 0
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
. ..+|...|.+++.+..+. +++.+.|.++++-++.........
T Consensus 358 --------------------------------~-g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~--- 400 (603)
T KOG0318|consen 358 --------------------------------A-GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE--- 400 (603)
T ss_pred --------------------------------c-cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc---
Confidence 0 023888899998887666 778888889998766432211000
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~ 885 (1128)
.. .......+++..+|+.+++.+.++.|.+..-.++ +.+.. -.-...+++++| ++
T Consensus 401 --------------~~-------~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~ 455 (603)
T KOG0318|consen 401 --------------VV-------KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DG 455 (603)
T ss_pred --------------ee-------ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CC
Confidence 00 0233445899999998888888766666653222 12221 234578999999 99
Q ss_pred CEEEEEeCCCcEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
..+|+|+.|+.|+||.+..+.+ ...+..|.++|+++++|||+.+||++...+.+.+||+.+++..... ..-|+
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~----w~FHt- 530 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR----WAFHT- 530 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce----eeeee-
Confidence 9999999999999999987653 3356679999999999999999999999999999999998752111 12222
Q ss_pred CCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 964 TGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
..+.+++|+|+.+++++++ |..|.||+++..... +....+|...|+.+.|- |...+++.+.|..|++|++.
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 7899999999999999988 999999999876554 34445567779999996 45568888899999999874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=416.64 Aligned_cols=375 Identities=22% Similarity=0.374 Sum_probs=308.0
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
++.+.+........-+|.++|.|++|+|+|+ .||+|+.|.++++||+.+..++.. .++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCc
Confidence 5566665555566667999999999999999 689999999999999999887653 89999
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-----CCCeEEEEEecCCCeEEEEe
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-----d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999988765 6889999999999975 556 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
..|.++..+.||+.+|+|+.|-. + .+|++|+.|++|++|+...+....++.+|.++|+.++.+.|- ++-.
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy--~LRt---- 304 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY--VLRT---- 304 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--hhhc----
Confidence 88899999999999999999843 3 499999999999999998888888999999999999887662 1111
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
-+|.|.+++.-..++ . ..+.+..+ ....-..
T Consensus 305 ------------------------------gaf~~t~~~~~~~se--------~-~~~Al~rY----------~~~~~~~ 335 (480)
T KOG0271|consen 305 ------------------------------GAFDHTGRKPKSFSE--------E-QKKALERY----------EAVLKDS 335 (480)
T ss_pred ------------------------------cccccccccCCChHH--------H-HHHHHHHH----------HHhhccC
Confidence 112222221100000 0 00000000 0111123
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
+..|++|++|.++.+|+.....+.+.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------------ 361 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------------ 361 (480)
T ss_pred cceeEEecCCceEEEecccccccchh------------------------------------------------------
Confidence 47888999999998887533211110
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCC
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~ 800 (1128)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEE
Q 001190 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (1128)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~ 879 (1128)
.+.+ |..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..++
T Consensus 362 -----------------------rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 362 -----------------------RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred -----------------------hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 0111 777789999999999999999 99999999999999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 880 ~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
|+. |.++|++|+.|.++++|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=417.84 Aligned_cols=556 Identities=17% Similarity=0.248 Sum_probs=435.9
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
...+.+...|++++.||+|. +|++-...|...+-++.....++..+ -..+|.|+.||||
T Consensus 49 Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPn 107 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPN 107 (893)
T ss_pred eEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCC
Confidence 33455899999999999999 44555677888888877666654322 2468999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCc-----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--CCCeEEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLFN 489 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~--~g~~~~~ 489 (1128)
|+++|.|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ . .+-....
T Consensus 108 g~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 108 GKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred CcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEe
Confidence 999998864 4699998754322 223346779999999999999999 899999999999999 3 3333678
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-----------------------Cc-----------eeeec
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------GS-----------RVDYD 535 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-----------------------~~-----------~~~~~ 535 (1128)
+.+|.+.|.+.-|.. +...+++.+.||.+.+|..+.. +. +.-+.
T Consensus 185 l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 185 LNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN 262 (893)
T ss_pred ccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence 899999999888754 5578999999999999977611 11 01122
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEEEC
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDM 614 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~ 614 (1128)
.....+++.+|.+.-+.|+++-. .|...+|.+....+++.+.-... .|..++|+..|.+|+.|+. -|.+.||+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 23357899999999888888874 78889999999999999887765 7899999999999999875 589999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1128)
.+..-+...+ +|...+++++++|||+++|+|+.||.|+|||...+..
T Consensus 338 qsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC------------------------------- 384 (893)
T KOG0291|consen 338 QSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC------------------------------- 384 (893)
T ss_pred eccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-------------------------------
Confidence 8876555544 5667899999999999999999999999999876621
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEec
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1128)
.+++.. |+..|+.+.|+.
T Consensus 385 -----------------------------------------------------------~vTFte---Hts~Vt~v~f~~ 402 (893)
T KOG0291|consen 385 -----------------------------------------------------------FVTFTE---HTSGVTAVQFTA 402 (893)
T ss_pred -----------------------------------------------------------EEEecc---CCCceEEEEEEe
Confidence 112222 999999999999
Q ss_pred CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CC-
Q 001190 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG- 852 (1128)
Q Consensus 775 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg- 852 (1128)
.|+.+++.+-||+|+.||+.+.. ... .+.. ..+....|++..|.|.++..|+ |.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEEEeeccceE
Confidence 99999999999999999875421 111 0111 1345577899999999999998 54
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-eeecccccccCeeEEEEcCCCCEEE
Q 001190 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILV 931 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~ 931 (1128)
.|.||++++|+.+..+.||.++|.+++|+| ++..||+|++|.+|++||+-... .+.++. +...+..++|+|||+.||
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 499999999999999999999999999999 89999999999999999997653 334444 778899999999999999
Q ss_pred EEcCCCcEEEEECCCCcccceeEE--------------eecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccc
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTI--------------HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 996 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 996 (1128)
++.-||.|.+||++.+.+...+.. ...........+.+++|+||..++++. ...|++|++.++-.
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 999999999999987665533311 111111226788999999999999965 78999999998765
Q ss_pred ccccccCCCC-----------------------------------------------------CCCeEEEEEeeCCCEEE
Q 001190 997 IRQWTPQDAL-----------------------------------------------------SAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 997 ~~~~~~~~~h-----------------------------------------------------~~~v~~l~~s~dg~~l~ 1023 (1128)
++.++..+++ .-.|.++.|||.|+-+|
T Consensus 617 lkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFA 696 (893)
T KOG0291|consen 617 LKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFA 696 (893)
T ss_pred eeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeee
Confidence 5543332210 12478899999999999
Q ss_pred EEecCCcEEEEecCCCceEEEeC
Q 001190 1024 ATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.++.+| +.||.+.+.-+...+.
T Consensus 697 aatTEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 697 AATTEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred eecccc-eEEEecCCceEEcccc
Confidence 998888 7889887765544444
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=414.89 Aligned_cols=575 Identities=17% Similarity=0.236 Sum_probs=444.1
Q ss_pred CCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 001190 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1128)
Q Consensus 354 pdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vw 433 (1128)
..|+ ++| ++.-..|.+||+++|+.... + ....-...|+|++-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr-~va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGR-AVA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCc-EEE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 3577 433 34556899999999955431 0 122334689999999999999999999999999
Q ss_pred EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEE
Q 001190 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1128)
Q Consensus 434 d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 512 (1128)
+..++..+. ++.||..+|+.+.|...|. +|+|||.|+.|.+|| ....-+.++.||.+.|+.+-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875544 6889999999999999999 899999999999999 66667899999999999988865 457999
Q ss_pred EEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC------------ceeeEe
Q 001190 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 580 (1128)
+.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 888999998311 111122
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEE--------------------------------EecCCC
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--------------------------------TDAEGG 628 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------------------------------~~~~~~ 628 (1128)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+.. +..-..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 222222333356677788899999999999998855321100 000011
Q ss_pred CCCcceEEEcCCCC---EEEEEEcCCcEEEEEcccCcc---ccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLR---SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
...+.++.|-|.+. .|+. -.++++.++.++.... ...........+++..|.+++++.+...++++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg------- 391 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG------- 391 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-------
Confidence 22456777766433 2333 6678888888766211 11222333456678889999999887766433
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
..+.+++|+...... .+. + ..+.+.+..|.|.+++++.|
T Consensus 392 -------------------------------a~~SikiWn~~t~kc---iRT--i-----~~~y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 392 -------------------------------AGESIKIWNRDTLKC---IRT--I-----TCGYILASKFVPGDRYIVLG 430 (888)
T ss_pred -------------------------------CCCcEEEEEccCcce---eEE--e-----ccccEEEEEecCCCceEEEe
Confidence 238899999764221 111 1 34588899999999999999
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 861 (1128)
..+|.+.++|+.. ..++.. .. +|.+.|.+++.+||++.+++|+ |.+|++||..-
T Consensus 431 ~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 431 TKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred ccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 9999999997642 222221 12 3999999999999999999999 99999998741
Q ss_pred -----ceEEEEee-------CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCE
Q 001190 862 -----FKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929 (1128)
Q Consensus 862 -----~~~~~~~~-------~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 929 (1128)
+...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+....+.||.-||.|+.+|||+++
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe
Confidence 11111111 1356799999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
++|||.|+.|+||-++-|.|-+.+..+. ..|.+|.|-|+...+.+++ |+.++-||..+.+.+..+..| ..
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHd------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ 635 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHD------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HS 635 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhccc------CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hh
Confidence 9999999999999999998866654442 7899999999988888865 999999999999999888876 79
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
.|+|++.+|+|.++++++.|.+|++|....-.++..
T Consensus 636 ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 636 EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred eeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 999999999999999999999999999766444333
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=414.86 Aligned_cols=518 Identities=12% Similarity=0.272 Sum_probs=400.3
Q ss_pred cccCCCCCcceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|++........... ..+..|+|+.-+||.- +||+|..||.|+||+..++.... .+.||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngH 106 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGH 106 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eeccc
Confidence 677665543333333 4556899999999986 88999999999999998876554 38899
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
...|+++.|...|..||+|+.|+.|.+||+-...-+. .+.||...|+..-|..+.+ ++++.+.|+.|++|| .+.
T Consensus 107 K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred ccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccc
Confidence 9999999999999999999999999999998755443 5889999999999998777 899999999999999 889
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce--------------eeecCCCCeEEEEEEcCCC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--------------VDYDAPGHWCTTMLYSADG 550 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--------------~~~~~~~~~i~~~~~s~~g 550 (1128)
.+..+...|.+.++++++++ +.+++++.|+.+++|++...... .... ..+..-.++..+++
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq-sk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ-SKGREINLVTDFSD 256 (888)
T ss_pred eeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeec-cCCceeEEeecCcc
Confidence 99999999999999999954 58999999999999998211100 0000 01112222223333
Q ss_pred CeEEEeeecc----------------------------------------------------------------------
Q 001190 551 SRLFSCGTSK---------------------------------------------------------------------- 560 (1128)
Q Consensus 551 ~~l~~~~~~~---------------------------------------------------------------------- 560 (1128)
+++++-+.++
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence 3333332200
Q ss_pred ----CCCceEEEEeCCCCcee---------eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC
Q 001190 561 ----DGDSFLVEWNESEGTIK---------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 561 ----~~~~~i~~wd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 627 (1128)
-.++.+..|.+...... .++.||.. .|..++++.+...+++| ..+.+.+|+..+.+++.++...
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc-
Confidence 01344555544431111 34556665 78888888765544444 4568889998888888888643
Q ss_pred CCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccC
Q 001190 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1128)
Q Consensus 628 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1128)
-+.+..|-|.++++++|...|.+.++|+.+. ......
T Consensus 414 ---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti--------------------------------------- 450 (888)
T KOG0306|consen 414 ---YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETI--------------------------------------- 450 (888)
T ss_pred ---cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhh---------------------------------------
Confidence 4678888888888888888888888887654 111111
Q ss_pred CCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccce
Q 001190 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 787 (1128)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 787 (1128)
..|.+.|+.++.+||++.+++++.|.+
T Consensus 451 -----------------------------------------------------~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 451 -----------------------------------------------------RAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred -----------------------------------------------------hccccceeeeeecCCCCceEEecCCcE
Confidence 128899999999999999999999999
Q ss_pred eEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEE
Q 001190 788 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT 866 (1128)
Q Consensus 788 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~ 866 (1128)
|++|++..... ..|... ++..+.....+ ..++.|.|+.+||||++||++- |++++||-+++.+...
T Consensus 478 VkfWdf~l~~~-~~gt~~-----k~lsl~~~rtL-------el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl 544 (888)
T KOG0306|consen 478 VKFWDFKLVVS-VPGTQK-----KVLSLKHTRTL-------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL 544 (888)
T ss_pred EEEEeEEEEec-cCcccc-----eeeeeccceEE-------eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee
Confidence 99999864332 111110 00011111111 2678899999999999999998 9999999999999999
Q ss_pred EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 867 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 867 ~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
++.||.-+|.|+.+|| |++++++|+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-..
T Consensus 545 sLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 545 SLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCC
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK 993 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~ 993 (1128)
.+.++.. ++|. ..+.+++.+|+|.++++++ |.+|++|....
T Consensus 624 Fe~iq~L-----~~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 FEEIQKL-----DGHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhheee-----ccch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 7765444 4444 8899999999999999975 89999999765
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=385.05 Aligned_cols=617 Identities=13% Similarity=0.180 Sum_probs=418.5
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe--
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-- 425 (1128)
..++-+|... ++|- -....|.+||++..++ .+++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ-------------------~hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQ-------------------SHLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccch-------------------hheecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566544 3332 1235788999876553 345778899999999999999999985
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--CCeEEEEecCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
....++||++..-..+. .|..|+-.|+|++|+|.++ ++++.+. |-.|.+||..-.....-..-...|..++|+
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs 174 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS 174 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEc
Confidence 66779999999876555 5789999999999999999 6776654 446788982222222222345678888985
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCcee-e--ecCCCCeEEEEEEcCCCCeEEEeee-ccC--------CCceEEEEeC
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRV-D--YDAPGHWCTTMLYSADGSRLFSCGT-SKD--------GDSFLVEWNE 571 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~--~~~~~~~i~~~~~s~~g~~l~~~~~-~~~--------~~~~i~~wd~ 571 (1128)
++|.|+++.+ ...|++|.++...... . +.+...-...+. +..+++.++. +.- ..|.+.- .
T Consensus 175 --EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvE--F 246 (1080)
T KOG1408|consen 175 --EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVE--F 246 (1080)
T ss_pred --cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceee--e
Confidence 4788998876 5789999987665211 1 111111000111 1111111110 000 0122222 2
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----------------------CCC
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----------------------GGL 629 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 629 (1128)
...+++..+-.-......|++.+ .++|++|+.+|.|++|+.++...+.+++.. +..
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 22333332222222245566665 579999999999999998776544433221 112
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
....++.|++....|.+...|..++|||++.-.+.-+... .-.
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s---~ly---------------------------------- 367 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS---MLY---------------------------------- 367 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceee---eee----------------------------------
Confidence 2335778999889999999999999999987533222110 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
..--||++.... +. + |...- +.-|.+- +++++.|++|+
T Consensus 368 --------------------------HS~ciW~Ve~~p----~n---v-----~~~~~---aclp~~c-F~TCSsD~TIR 405 (1080)
T KOG1408|consen 368 --------------------------HSACIWDVENLP----CN---V-----HSPTA---ACLPRGC-FTTCSSDGTIR 405 (1080)
T ss_pred --------------------------ccceeeeecccc----cc---c-----cCccc---ccCCccc-eeEecCCCcEE
Confidence 223456654311 00 0 11111 1123333 88999999999
Q ss_pred eeeccccCCCCC--Cceeeeeccc-ee---------ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEE
Q 001190 790 LWKWHRNEQNPS--GKATASAVPQ-HW---------LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISL 856 (1128)
Q Consensus 790 lw~~~~~~~~~~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~v 856 (1128)
+|++....-+.. ........++ +| |...+..-............++++++||||++||+|. .|.++|
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 999886321000 0000000000 00 1111000000001112456799999999999999998 799999
Q ss_pred EECCCceEEEEeeCCCCCeeEEEEcCC--CCCEEEEEeCCCcEEEEeccc-ceeeecccccccCeeEEEEcCCC--CEEE
Q 001190 857 FNMMTFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSL--NILV 931 (1128)
Q Consensus 857 wd~~~~~~~~~~~~~~~~v~~l~~s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~ 931 (1128)
|++...+....+.+|..+|.|+.||.. ..++||+++.|.-|+|||+.. ..++.++.+|+..|+++.|...| ..++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 999999999999999999999999862 357999999999999999974 46788999999999999999887 7899
Q ss_pred EEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCe
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPI 1010 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v 1010 (1128)
++|.|+.|.+--.........++.+..... ...+..|+..|..++++++ .|..|+||++.+++..+.+.+.+.|.+..
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~-ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLS-KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccc-cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 999999876544332111111211111111 1567889999999999885 69999999999999999999999988999
Q ss_pred EEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1011 SCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1011 ~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
..+...|.|-||++.+.|+++.++|.-+|+++.++. +|.-.|+.+.|.+ |.+.|++.+.||.|.||.
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~------------GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT------------GHSEAVTGVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhc------------Ccchheeeeeecc-cchhheeecCCceEEEEE
Confidence 999999999999999999999999999999999988 5666779999999 799999999999999999
Q ss_pred CCC
Q 001190 1091 PSE 1093 (1128)
Q Consensus 1091 ~~~ 1093 (1128)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=365.92 Aligned_cols=324 Identities=18% Similarity=0.277 Sum_probs=286.5
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
+|..+|.|++|+|+|..|++|+.|.++++||+.+... ...
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-~~t--------------------------------------- 152 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-LFT--------------------------------------- 152 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-cee---------------------------------------
Confidence 5556899999999999999999999999999987521 111
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
. .+|...|.+++|+|||+.|++|+.||
T Consensus 153 --------------------------------------------------~---KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 153 --------------------------------------------------C---KGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred --------------------------------------------------e---cCCccEEEEEEECCCcchhhccccCC
Confidence 1 34899999999999999999999999
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-----CCCeEEEEe-CCeEEEEECC
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSAT-GGKISLFNMM 860 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~~-dg~i~vwd~~ 860 (1128)
.|++| |+++|..+...+.+ |...|++++|.| ..++||+++ ||.++|||+.
T Consensus 180 ~I~lw----------------------dpktg~~~g~~l~g--H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 180 SIRLW----------------------DPKTGQQIGRALRG--HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred eEEEe----------------------cCCCCCcccccccC--cccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 99988 67788888888888 999999999966 678999998 9999999999
Q ss_pred CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEc-----------CCC--
Q 001190 861 TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-----------TSL-- 927 (1128)
Q Consensus 861 ~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-----------~d~-- 927 (1128)
.+.++..+.+|..+|+|+.|- +..++++|+.|++|++|+...|++..+++||...|+.++.+ |.+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred CceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 999999999999999999996 35699999999999999999999999999999999999887 223
Q ss_pred -----------------------CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c
Q 001190 928 -----------------------NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 983 (1128)
Q Consensus 928 -----------------------~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 983 (1128)
..|+||+.|.++.+|+-...++ ++....+|. ..|..+.||||++++++++ |
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----pi~rmtgHq-~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----PITRMTGHQ-ALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----chhhhhchh-hheeeEEECCCccEEEEeecc
Confidence 3599999999999999765432 222334444 7899999999999999987 9
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
..|++|+..+|+.+..+.+| -..|..++||.|.++|++|+.|.+++|||+.+.++...+. +|...
T Consensus 389 kSVkLW~g~tGk~lasfRGH---v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp------------Gh~DE 453 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGH---VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP------------GHADE 453 (480)
T ss_pred cceeeeeCCCcchhhhhhhc---cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC------------CCCce
Confidence 99999999999999999886 8999999999999999999999999999999988877766 66777
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1064 PLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
|.++.|+| ||..+++|+.|..+++|.
T Consensus 454 Vf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecC-CCceeecCCCceEEEeec
Confidence 89999999 799999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=343.21 Aligned_cols=306 Identities=18% Similarity=0.279 Sum_probs=260.1
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC--ceecccccccccccccCccccc-eeccCCCcc
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQA-SIFKDVPIS 408 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~ 408 (1128)
+.|......++|+.+|.+++|+|-..-++|+|+.|.+.++|++... .......++ .+... ..-...+..
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKD 237 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCC
Confidence 3566777788899999999999976657899999999999998751 111100000 00000 001112468
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|...
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEE
Confidence 9999999999999999999999999988753 22 5889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
+.+..|..+-..+.|.. ...+++.+.||.|+++.+.......++.+|.+.|.++.|+|.|.+|++++. |++++
T Consensus 312 q~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlk 384 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLK 384 (524)
T ss_pred EeeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeE
Confidence 99999998867777743 247999999999999999999999999999999999999999999999984 99999
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCCC---------CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
||+.........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|+
T Consensus 385 iWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS 461 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFS 461 (524)
T ss_pred eeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEec
Confidence 999999999999999998 78889999875 37899999999999999999999998755 4589999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|+|+++|+|+.||.|.+|+..++
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999998876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=340.40 Aligned_cols=585 Identities=15% Similarity=0.150 Sum_probs=441.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
..|..-|+.++++.+.+.+..+||.+.-..+.- -..+...|+|++-..+ ++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 556666666788888999999999987666532 2357889999987655 44444333 3
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-Ce----EEEecCCCCCeEEEecc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RK----LFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~----~~~~~~h~~~v~~~~~~ 503 (1128)
|.+|- .|+.++. .+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ .+ +..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4544443 466788878777654 66 688999999999999 543 22 112222233377764 6
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
|+.--+.++.|+.+|.+.+|++++++...++......|+++.-+|-=..++.|. .+|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEEEEEEcc
Confidence 665566789999999999999999999999999999999999999888999888 4999999999999999999977
Q ss_pred cCCceeEEEEeCCCCEEEE-EECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+.+..+.. .|.+.|....|-|....+++++.|+.+++|-.+++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 54 8999999999976555 55679999999999888877753 334578999999999999999999999999765441
Q ss_pred cccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
-.. +
T Consensus 322 g~p-------------------------------------------------------------------------R--- 325 (910)
T KOG1539|consen 322 GVP-------------------------------------------------------------------------R--- 325 (910)
T ss_pred Ccc-------------------------------------------------------------------------h---
Confidence 100 0
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEe-cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1128)
.++.. .||..+..++.|. .+|..+++++.|++++.+++....++..-.. .......+..
T Consensus 326 -----------~LR~R--~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 326 -----------LLRSR--GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred -----------heeec--cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 01111 3588888889888 7888899999999999887765433221110 1111111111
Q ss_pred cccccCCCCCCCeeEEEeccCC----CeEEEEe--CCeEEEEECCCceE-EEEee-----CCCCCeeEEEEcCCCCCEEE
Q 001190 822 ANDVAGVNLEEAVPCIALSKND----SYVMSAT--GGKISLFNMMTFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 822 ~~~~~~~~~~~~v~~~~~s~dg----~~la~~~--dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~d~~~la 889 (1128)
.........-.+|..+++..+- .-++++. +...+.|+...... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 1000000123457777775422 1234443 56699999976554 22222 2336799999999 999999
Q ss_pred EEeCCCcEEEEecccceeeecc---cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCc
Q 001190 890 IGTEDSTIHIYNVRVDEVKSKL---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1128)
.|+..|.|.+|++++|-....+ ..|.++|++++...-++.++|++.+|.+++||......+....+. ..+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-------~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-------SSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-------CCc
Confidence 9999999999999999988888 589999999999988899999999999999999987755444443 667
Q ss_pred cEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 967 TRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
..+..+.....+++ .+|-.|+++|+.+.+.++.+.+| ...|++++|||||++|++++.|++|++||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 88888888777776 46889999999999999999886 899999999999999999999999999999999999888
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-CcEEEEcCC
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-GSVKVMEPS 1092 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-g~i~iWd~~ 1092 (1128)
.. ....+++.|+| ++.+|+++..| .-|++|--.
T Consensus 615 ~v-------------d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 615 LV-------------DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ec-------------CCcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 72 23458899999 69999999999 569999533
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=343.99 Aligned_cols=553 Identities=15% Similarity=0.200 Sum_probs=359.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|..+++|++|||+|+ |+|+|- ....+++|++.....+.. +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 789984 456899999988776654 7789999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE---------
Q 001190 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--------- 488 (1128)
Q Consensus 421 las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~--------- 488 (1128)
+++.+. |-.|.+||+....... -..-...|..++|+.||. +++|.+ ...|++|. ..++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998775 5678899887543222 223456799999999999 788877 68999998 4333100
Q ss_pred ----Ee------------------------cCC-----------------CCCeEEEeccCCCCccEEEEEeccCcEEEE
Q 001190 489 ----NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1128)
Q Consensus 489 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 523 (1128)
.+ .|| +..-+|+++ +.++|+.|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeec
Confidence 00 011 111233444 33689999999999999
Q ss_pred ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE
Q 001190 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1128)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1128)
+..+.....++.....- |.-++.+. ..=....+.....| +..-.+.|++....|.+.
T Consensus 286 np~tL~y~~Tlpr~hal---------g~d~a~~~---------q~~~~~s~~~~a~f-----PD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHAL---------GSDTANLS---------QPEPKNSESSPAIF-----PDAIACQFDETTDKLSCV 342 (1080)
T ss_pred Ccchhhhcccccccccc---------ccchhhcc---------cccccccccCcccC-----CceeEEEecCCCceEEEE
Confidence 77654433332211100 00000000 00000000000000 012234555555566666
Q ss_pred ECCCcEEEEECCCCeeeEE-EecCCCCCCcceEEEc------------CCCCEEEEEEcCCcEEEEEcccCccccccccC
Q 001190 604 GEDSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFS------------KEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 604 s~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s------------p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
..|..++|||++.-..+.. ...-.|...|+.+.-- |. ..+++++.|++|++|++..... -.....
T Consensus 343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctn-n~vyrR 420 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTN-NQVYRR 420 (1080)
T ss_pred EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEEEeecccccc-cceeec
Confidence 6666666666554322111 0011111123322221 22 2488999999999999876311 000000
Q ss_pred CccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCC
Q 001190 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1128)
Q Consensus 671 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (1128)
.. ++.+-..+++ .|+..-+. .|...-++|-...
T Consensus 421 Ni------------ls~~l~ki~y-----------------------------~d~~~q~~--~d~~~~~fdka~~---- 453 (1080)
T KOG1408|consen 421 NI------------LSANLSKIPY-----------------------------EDSTQQIM--HDASAGIFDKALV---- 453 (1080)
T ss_pred cc------------chhhhhcCcc-----------------------------ccCchhhh--hhccCCcccccch----
Confidence 00 0000000000 00000000 0011112221110
Q ss_pred ceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCC
Q 001190 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1128)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1128)
..-+....+++++++|+|++|++|..-|.+++|++..-.. + ..+. .|
T Consensus 454 --------s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~-~~~e--AH 500 (1080)
T KOG1408|consen 454 --------STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T-CFME--AH 500 (1080)
T ss_pred --------hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------h-hhee--cc
Confidence 0012455789999999999999999999999998753211 0 1122 39
Q ss_pred CCCeeEEEecc---CCCeEEEEe-CCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCC--CEEEEEeCCCcEEEEecc
Q 001190 831 EEAVPCIALSK---NDSYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 831 ~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~--~~lasg~~dg~v~iwd~~ 903 (1128)
+.+|.|+.||. ..++||+++ |.-|+|||+. ...++.++.+|...|+++.|.- .| ..+++++.|+.|.+--..
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhc
Confidence 99999999986 357899998 7779999996 4567889999999999999987 44 678889999988764433
Q ss_pred cceeeeccccc-----ccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 904 VDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 904 ~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
...-...+..| ...+..++..|..+++++++.|+.|+|||+.+|++.+.+.... ++. +....+...|.|.|+
T Consensus 580 k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~--~~e-G~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 580 KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR--DHE-GDLIKVILDPSGIYL 656 (1080)
T ss_pred cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc--cCC-CceEEEEECCCccEE
Confidence 22111222222 2468899999999999999999999999999999877665432 222 556778999999999
Q ss_pred EEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 979 LVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 979 ~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
+++ +|.++.++|..+++++....+| ...|+.+.|++|.++|++.+.||+|.||.+..
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 985 7999999999999999998876 89999999999999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=339.33 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=264.9
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--C
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 418 (1128)
++...+|..+.||+|++ .|||||-+|.+++|+..+...+. .|.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 35677899999999999 78999999999999999886553 39999999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
..||+|+.||++++|++++..++. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999987666 6889999999999999999 899999999999999 8899999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ ||.+++||+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++|+ +|++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC----CCCcEEEeeecccccc
Confidence 9999977 778999999999999999999999999999999999999999999999998 4999999999999999
Q ss_pred eEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
.++.+|.+ .|+.++|+| .|.+|++++.|++++||...+..+++.+.+|. ..|.++.+++|+..+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE--GKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc--cceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 899999998 67899999999999999999999999998654 489999999999999999999999999
Q ss_pred E
Q 001190 657 A 657 (1128)
Q Consensus 657 ~ 657 (1128)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=330.03 Aligned_cols=475 Identities=16% Similarity=0.272 Sum_probs=361.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+++.|-||.|+|... .+.++-..|.|.|||.++...+.. +.-.+-+|++..|-+..++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 888999999999998 556667899999999999887754 333567999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~ 500 (1128)
+|++|..|+||+.++++.++ +|..|.+.|++++.+|... +++|+|+|-+|++|| ..-.+.+++.||+.-|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 6889999999999999998 899999999999999 4456789999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC--CeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
+|.|. |...+++++-|++|++|.+....+..++.+|...|+++.|-+.| -+|++++ .|..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga----DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA----DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC----CCceEEEeecchHHHHH
Confidence 99987 55799999999999999999999999999999999999998866 4888887 49999999999999999
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++.||.+ .|..++|+|.-..+++|++||+++||+..+.+...++.... .+++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999998888876544 38999999999999999999988765 22
Q ss_pred ccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCC
Q 001190 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1128)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1128)
-.. ...+.+++.|+.+
T Consensus 298 gre------------------eP~vsMd~~gKIi---------------------------------------------- 313 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKII---------------------------------------------- 313 (794)
T ss_pred cCC------------------CCceeecCCccEE----------------------------------------------
Confidence 111 1123344444333
Q ss_pred CcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCC
Q 001190 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1128)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1128)
|.... .|..+-.- +.+.++ ++..|
T Consensus 314 --wa~~~--------------------ei~~~~~k-------s~~~~~---------------------------ev~Dg 337 (794)
T KOG0276|consen 314 --WAVHS--------------------EIQAVNLK-------SVGAQK---------------------------EVTDG 337 (794)
T ss_pred --EEcCc--------------------eeeeeece-------eccCcc---------------------------cccCC
Confidence 22110 11111000 000000 11111
Q ss_pred ccccccccCC-CCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 001190 819 LLMANDVAGV-NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1128)
Q Consensus 819 ~~~~~~~~~~-~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v 897 (1128)
+.+....... .-.-....++.||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~v 411 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNV 411 (794)
T ss_pred ccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCce
Confidence 1111000000 01112345788999999999999998888743221 12445667788998 76777888889999
Q ss_pred EEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 898 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
.++ ++.+..+.+...-. ...--.|.+|...+ ++.+++||.++++.++.+.+. ...+.|+.+|.+
T Consensus 412 ki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---------~k~v~w~d~g~l 475 (794)
T KOG0276|consen 412 KIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---------SKHVYWSDNGEL 475 (794)
T ss_pred EEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec---------cceeEEecCCCE
Confidence 998 66666655542211 11122344555544 567999999999876665543 467999999999
Q ss_pred EEEEecCeEEEEecCC
Q 001190 978 MLVVHETQLAIYDASK 993 (1128)
Q Consensus 978 l~~~~d~~i~v~d~~~ 993 (1128)
++++.|...+++....
T Consensus 476 Vai~~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 476 VAIAGDDSFYILKFNA 491 (794)
T ss_pred EEEEecCceeEEEecH
Confidence 9999888877776553
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=304.63 Aligned_cols=292 Identities=22% Similarity=0.308 Sum_probs=254.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|++.|+.++..+.+..++.+++.|.+|.+|++......... ..+.+.||+..|..++.++||.+.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCceE
Confidence 499999999999998889999999999999998765332211 224599999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC--CCCeEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVYS 499 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h--~~~v~~ 499 (1128)
++++.|+++++||+.+|+..+ .|.||...|.+++|++|.+ .++||+.|++|++|+.-|.+..++..+ .+.|.|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 999999999999999997666 4889999999999999999 799999999999999778888777655 789999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++ .++.+.+||++.++.+..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCCceeEe
Confidence 9999998789999999999999999999999999999999999999999999999987 599999999999999887
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-------CCCcceEEEcCCCCEEEEEEcCCc
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
+.... .|.+++|+|+.-.| ++..+..|+|||++++..+..+..... .....+++|++||..|..|..|+.
T Consensus 230 l~a~~--~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LEAFD--IVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccCCC--eEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 77654 69999999986544 444556699999999988877654322 223467899999999999999999
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=329.53 Aligned_cols=619 Identities=14% Similarity=0.158 Sum_probs=396.2
Q ss_pred ceEEee-cCCCcEEEEEEeCCCC--cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~--~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
....++ +|..+|+|+.|-|+.. -++++|+.|+.|++|.++....+.. ..+.+|...+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------YTIQGHCKECVCV 107 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------EeecCcceeEEEE
Confidence 344444 4999999999999875 1478999999999999984443321 2355666555554
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCCcceecee--ecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC--CeE
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ--IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKL 487 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~--~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g--~~~ 487 (1128)
. ..-........|+.+.+||.+..+.. .... +..-..--.|+++.++.+.++++.|+.+..|.++. ..+ +.+
T Consensus 108 ~--a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 108 V--ARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred E--eeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 3 33333333368999999999655511 1111 22222234566777765555788888888899988 433 456
Q ss_pred EEecCCCCCeEEEeccCCCC-ccEEEEEeccCcEEEEecCCCCc---------------------e----------eeec
Q 001190 488 FNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGS---------------------R----------VDYD 535 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~---------------------~----------~~~~ 535 (1128)
..+.||.+.|.+++|..... .-+|++++.|..||+|.+..... . ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 78899999999999976543 56889999999999997744330 0 0123
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc--eeeEec----cccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
+|..+|+++.|.|.+..|++++. |.++.+|...+.. -+.... ++........-|+|+++.+++-+..|..
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred CcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 78889999999999988998885 8999999876542 111111 1222246778899999999999999999
Q ss_pred EEEEC-CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 610 KFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 610 ~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
++|.. +...........+|...|..++|+|.|.+|++.+.|.+-|++-.-..+.....+..++ .|.-.+.+++|-+.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ--iHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ--IHGYDLTCLSFVNE 418 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc--cccccceeeehccC
Confidence 99983 3334444445567788999999999999999999999999986542222222221111 11122333333331
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
...++++....-+|+|+.... ... .-..+.
T Consensus 419 -------------------------------------~~~FVSgAdEKVlRvF~aPk~----fv~---------~l~~i~ 448 (764)
T KOG1063|consen 419 -------------------------------------DLQFVSGADEKVLRVFEAPKS----FVK---------SLMAIC 448 (764)
T ss_pred -------------------------------------CceeeecccceeeeeecCcHH----HHH---------HHHHHh
Confidence 112233444444455553210 000 000111
Q ss_pred E-----EEEecCcceEEEeeccc-eeEeeeccccCCCCCCc--eeeeeccceeccCCCcc--------ccccccCCCCCC
Q 001190 769 R-----LLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGK--ATASAVPQHWLPSSGLL--------MANDVAGVNLEE 832 (1128)
Q Consensus 769 ~-----l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 832 (1128)
+ ..-.|+|..+-.-+-.. .+..=+...+....... .....-..+..+..... -...+.| |..
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGy 526 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGY 526 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--Cce
Confidence 1 11112221111111000 00000000000000000 00000000111111000 0112334 999
Q ss_pred CeeEEEeccCCCeEEEEe-C-----CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 833 AVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
.|.+++.+|+|+++|++. . ..|++|+..+......+.+|+-.|+.++||| |+++|++.+.|.++.+|......
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeeccc
Confidence 999999999999999996 2 2499999999999999999999999999999 99999999999999999886432
Q ss_pred e----eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC--cccceeEEeecCCCCCCCccEEEEcCC----CC
Q 001190 907 V----KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFNAD----QV 976 (1128)
Q Consensus 907 ~----~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~ 976 (1128)
. ....+.|+.-|.++.|+|+++++||+|.|++|++|..... +.+..+ ........++.+++.|- ..
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~----a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF----ACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh----chhccCCceeeEEeecccccccc
Confidence 1 2346789999999999999999999999999999999887 333322 11122277888888762 22
Q ss_pred -EEEEE-ecCeEEEEecCCc---------ccccccccCCCCCCCeEEEEEeeC----------CCEEEEEecCCcEEEEe
Q 001190 977 -RMLVV-HETQLAIYDASKM---------ERIRQWTPQDALSAPISCAVYSCN----------SQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 977 -~l~~~-~d~~i~v~d~~~~---------~~~~~~~~~~~h~~~v~~l~~s~d----------g~~l~t~~~dg~i~vwd 1035 (1128)
.+++| ..|.|.+|....- .....+.....|...|+.+.|+|- ...|++|++|..++|++
T Consensus 682 ~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence 45555 4899999996511 112223334456889999999974 23568999999999998
Q ss_pred cC
Q 001190 1036 AD 1037 (1128)
Q Consensus 1036 ~~ 1037 (1128)
+.
T Consensus 762 v~ 763 (764)
T KOG1063|consen 762 VD 763 (764)
T ss_pred cc
Confidence 74
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=334.33 Aligned_cols=566 Identities=13% Similarity=0.170 Sum_probs=415.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.+.+.|+|++=+.+-- .+| ....|.+|. .|+.+. ++..+|.+.|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~~v---y~A-~g~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV---YVA-SGNKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE---EEe-cCcEEEEEE--ccceEE------------------EEeccccceEEEEe--eecceE
Confidence 4888999998776643 333 234666665 344432 34667777777655 458899
Q ss_pred EEEeCCCeEEEEEccCC-Ccceeceeec-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 422 GVAFTKHLIQLYSYAGS-NDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~-~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
+++..++.+.||+..++ +.+....++. ...+.|+++ ++|..-.-.++.|+.+|.+.+|+ .+++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999884 2211111222 222236665 44543222588999999999999 99999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
++.-+|. -..++.|..+|+|.+++++..+....+....+.|++++|..||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 9987664 468999999999999999999999999888889999999999998877764 46889999999999988
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC--CCeeeEEEecCCCCCCcceEEEc-CCCCEEEEEEcCCcEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~dg~i~i 655 (1128)
.....+.+.+....|.+....+++++.|..+++|=.+ .|.+.......+|..+..++.|. .+|..+.+++.|++++.
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 8885555588889999999999999999998888554 44333333344667788999998 68999999999999998
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
+++.........-+.+... .++. ............+...++..........+.++..-.+
T Consensus 362 fs~~~e~~~~~l~~~~~~~-------------~~kk-------~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 362 FSVISESQSQELGQLHNKK-------------RAKK-------VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred hhhhHHHHhHhhccccccc-------------cccc-------ccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 8875431111100000000 0000 0000000111112222222222333344555555566
Q ss_pred CCCCcceeEEEeeCCceeE-EEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 736 DKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
...+.|+............ -.+ ......+++++.++.|+..+.|.+.|.|-+|+++.
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~---~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS------------------- 479 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRF---KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS------------------- 479 (910)
T ss_pred ceEEEEeccCcccccEEecCccc---cccCcceEEEEEeccCceEEEeccCCeEEEEEccc-------------------
Confidence 7778888875433221111 011 11446789999999999999999999999987653
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
|...........|..+|+.++...-++.+++++ +|.+++||.....++..+. -...++++.++. ...++|.+..
T Consensus 480 ---Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d 554 (910)
T KOG1539|consen 480 ---GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD 554 (910)
T ss_pred ---CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence 332222222224999999999988888899887 9999999999888777776 345678888888 7789999999
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
|-.|+++|..+.+.++.|.||++.|++++|||||++|++++.|++|++||+-++.++..+.+. .+...+.|+|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SP 627 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSP 627 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECC
Confidence 999999999999999999999999999999999999999999999999999999988777665 7889999999
Q ss_pred CCCEEEEEe--cCeEEEEecCC
Q 001190 974 DQVRMLVVH--ETQLAIYDASK 993 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~ 993 (1128)
+|.+|++.+ ...|++|.-.+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 999999986 36788887543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=329.21 Aligned_cols=284 Identities=21% Similarity=0.312 Sum_probs=256.9
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
|.+.+|..+.||+|++.||||+-+|.++||+..+...+. +|.||.+.|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467899999999999999999999999999999875544 699999999999999983222799999999999999 5
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
...++..+.+|..+|..++|+| +|++|+|++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5588999999999999999988 6789999999999999999999999999999999999999999999999985
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~ 641 (1128)
|..-+|||+++|+.+..+.+|.+ .|..+.|+|+|..|++||.|++++|||++....+.++..|. +-|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc--chhhheEecccCC
Confidence 88889999999999999999887 89999999999999999999999999999999988888665 4799999999 88
Q ss_pred CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCC
Q 001190 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1128)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1128)
.+|++++.|++++||...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987655 222222
Q ss_pred CCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
.||.++|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34889999999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=325.20 Aligned_cols=594 Identities=15% Similarity=0.190 Sum_probs=409.4
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC---EEEEEe
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAF 425 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 425 (1128)
...|.|.+ ++|.| ....|.+||..+.... ..+.||.++|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafG-a~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFG-AGPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEec-CCceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEcc
Confidence 34456666 45655 5679999998765332 24899999999999999888 899999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe---EEEecCCCCCe--EEE
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK---LFNFEGHEAPV--YSI 500 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~---~~~~~~h~~~v--~~~ 500 (1128)
.|+.|++|.+.. +.+....++.+|...+.++ ...-. ...+...|+++.+||..+.. ...+.-....+ .|+
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999984 3444555677776655554 43332 22233689999999953333 22332222222 455
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCC--CCceeeecCCCCeEEEEEEcCCCC---eEEEeeeccCCCceEEEEeCCCCc
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
++.+.++.-.++.|+.+..|.++.-.. ......+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecC
Confidence 555544444556677778888885442 244557889999999999987654 444444 79999999764322
Q ss_pred ---------------------ee----------eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEE
Q 001190 576 ---------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTS 622 (1128)
Q Consensus 576 ---------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~ 622 (1128)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|...+. -.+..
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 11 11237776 8999999999999999999999999987554 33333
Q ss_pred Eec---CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCC
Q 001190 623 TDA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1128)
Q Consensus 623 ~~~---~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 699 (1128)
... .+.........|+|+++.+++-+..|..++|.....
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~-------------------------------------- 348 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK-------------------------------------- 348 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--------------------------------------
Confidence 221 122334788999999999999999999999972221
Q ss_pred cceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceE
Q 001190 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (1128)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 779 (1128)
..|.. .+...||.+.|..++|.|.|.++
T Consensus 349 ---------------------------------------~~w~~-------------~~~iSGH~~~V~dv~W~psGefl 376 (764)
T KOG1063|consen 349 ---------------------------------------TFWTQ-------------EPVISGHVDGVKDVDWDPSGEFL 376 (764)
T ss_pred ---------------------------------------cceee-------------ccccccccccceeeeecCCCCEE
Confidence 01111 11114599999999999999999
Q ss_pred EEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEE
Q 001190 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFN 858 (1128)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd 858 (1128)
++++.|.+-|++---..+. . |.- +.++ .-|...++|++|-+....+++|. ...+|+|+
T Consensus 377 Lsvs~DQTTRlFa~wg~q~------------~-wHE-----iaRP---QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 377 LSVSLDQTTRLFARWGRQQ------------E-WHE-----IARP---QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred EEeccccceeeeccccccc------------c-eee-----eccc---ccccccceeeehccCCceeeecccceeeeeec
Confidence 9999999988874221110 0 111 0000 12778888888877444455555 45578886
Q ss_pred CC-------------------------------------------CceE-------------------------------
Q 001190 859 MM-------------------------------------------TFKV------------------------------- 864 (1128)
Q Consensus 859 ~~-------------------------------------------~~~~------------------------------- 864 (1128)
.. +|..
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 42 0100
Q ss_pred --EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 865 --MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 865 --~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+..+.||...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|++++.|+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 122357888999999999 999999998543 599999999988889999999999999999999999999999
Q ss_pred cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc--ccccccccCCCCCCCeEEEE
Q 001190 938 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM--ERIRQWTPQDALSAPISCAV 1014 (1128)
Q Consensus 938 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~--~~~~~~~~~~~h~~~v~~l~ 1014 (1128)
++.+|......... +.......|. .-|....|+||+.++++++ |.+|.+|...+. +.+..+... .+...|++++
T Consensus 595 t~sl~~~~~~~~~e-~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-~~~~aVTAv~ 671 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDE-FRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-KFSLAVTAVA 671 (764)
T ss_pred eEEeeeeecccchh-hhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-ccCCceeeEE
Confidence 99999986543221 2222233333 5677889999999999976 999999999988 555554332 2389999999
Q ss_pred EeeC-----CCEEEEEecCCcEEEEecCCCceEEEeC---CCCCCCCcccCCCCccceEEEEEecCC---------CCEE
Q 001190 1015 YSCN-----SQLVFATFCDGNIGVFDADTLRLRCYIA---PSTYLSPSVLNGSQTVYPLVVAAHPLE---------PNQF 1077 (1128)
Q Consensus 1015 ~s~d-----g~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~---------~~~l 1077 (1128)
|.|- +..+++|-+.|.|.+|....-....... ...-.+.. ..+...|..+.|.|.. ...|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT---IGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc---cChHHhhheeEeccccccccccccceeEE
Confidence 9872 2367889999999999965211111110 00001111 1344567889999752 2247
Q ss_pred EEEECCCcEEEEcCC
Q 001190 1078 AIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~ 1092 (1128)
++|++|..++++++.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 999999999999875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=343.21 Aligned_cols=275 Identities=19% Similarity=0.301 Sum_probs=241.1
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceec--------cccccc----ccccccCcc
Q 001190 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV--------SKPFKI----WDMAACSLP 396 (1128)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~--------~~~~~~----~~~~~~~~~ 396 (1128)
-..+|..+++++. ....|+|+.||+|++ +||.|..|..|++|.+...+... ...... -++.+....
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 4567888899988 667899999999999 89999999999999998543211 000000 112222233
Q ss_pred ccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 397 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.....+.||+++|..+.|+|+.++|++|+.|++|++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3445699999999999999999999999999999999999987665 4779999999999999998 8999999999
Q ss_pred EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
.++|. ....+++.+.||-+.|.|+.||| +..++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999 88899999999999999999998 5579999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
++ .++.|.+||+.+++++..+.+|.+ .+.++.|+.+|..||+||.|..|++||+..-
T Consensus 595 g~----ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GD----EDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cc----cCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 98 499999999999999999999965 9999999999999999999999999998653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=295.25 Aligned_cols=292 Identities=16% Similarity=0.248 Sum_probs=262.3
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
...++|. |...|.++.|++|.+ .++++|.||.+.|||.-+...++. +.-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 3445565 999999999999999 679999999999999888766543 4446789999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCC---cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
+|.|+++|.|+-|+...||++.+.+ .++....+.+|++.+.++.|.+|+. |+|+|.|.+..+|| .+|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344446889999999999999886 89999999999999 999999999
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
.||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++++ .|++.++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS----DD~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS----DDATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC----CCceeEEEe
Confidence 999999999999886 778999999999999999999999999999999999999999999999998 499999999
Q ss_pred CCCCceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
++..+.+..|..... ..|.+++|+..|++|++|..|..+.+||.-.++.+..+.+| .++|.|+..+|||..+++|+-
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecch
Confidence 999999888875432 45889999999999999999999999999999999888855 558999999999999999999
Q ss_pred CCcEEEEE
Q 001190 650 DNGFKILA 657 (1128)
Q Consensus 650 dg~i~iw~ 657 (1128)
|.+++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=288.57 Aligned_cols=287 Identities=16% Similarity=0.219 Sum_probs=257.5
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
++|+||.+.|.++.|++|+++|++++.||.+.|||.-+...+. .+.-....|..++|+|.|+ ++++|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 3599999999999999999999999999999999998876555 3556778999999999999 8999999999999
Q ss_pred Ee-cCC------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC-CCC
Q 001190 480 WE-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1128)
Q Consensus 480 Wd-~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~-~g~ 551 (1128)
|+ .+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99 322 23467899999999999865 3 4799999999999999999999999999999999999999 999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
.+++++. |...++||++.+..+++|.+|.. .|..++|.|+|.-+++|+.|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999985 89999999999999999999998 899999999999999999999999999999999999988777788
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1128)
|++++||..|++|..|..|.++.+||.-.++.. .
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g--------------------------------------------- 309 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-G--------------------------------------------- 309 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceE-E---------------------------------------------
Confidence 999999999999999999999999997544110 0
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEee
Q 001190 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1128)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw 791 (1128)
.+ .+|.++|.++..+|||..+++++.|.+++||
T Consensus 310 --------------------------------------------~L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 310 --------------------------------------------VL---AGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred --------------------------------------------Ee---eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 01 2399999999999999999999999999999
Q ss_pred e
Q 001190 792 K 792 (1128)
Q Consensus 792 ~ 792 (1128)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=307.13 Aligned_cols=464 Identities=16% Similarity=0.226 Sum_probs=350.3
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++. +.-..-+|++..|.+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 455899999999999999999999999999999999887774 556788999999999888 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcC-CCCeEEEeee
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~ 558 (1128)
.+++.++.|..|.+-|.+++.||.. .++++++.|-+|++||.+.. .+..++.+|.+-|..++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999954 79999999999999999875 45678999999999999999 5668888885
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
|++|++|.+....+..++.+|.. .|.++.+-+.| .+|++|+.|.+|+|||.++..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999998 89999997654 6999999999999999999999999986655 899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1128)
|+|.-.++++|+.||+++||+..+- +....+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999987654 11111100
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeecccc
Q 001190 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1128)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~ 796 (1128)
..+++++++..+.+..++.|..+|.+.+=
T Consensus 268 ----------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~----- 296 (794)
T KOG0276|consen 268 ----------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK----- 296 (794)
T ss_pred ----------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE-----
Confidence 22355666666666667777777666541
Q ss_pred CCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC--CeEEEE------ECCCceEEE--
Q 001190 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG--GKISLF------NMMTFKVMT-- 866 (1128)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~-- 866 (1128)
.......+.+++.|+.+-+... ..+.+- ++..|+.+.
T Consensus 297 ---------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Ls 343 (794)
T KOG0276|consen 297 ---------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLS 343 (794)
T ss_pred ---------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccch
Confidence 1122223444555554433321 111111 233333321
Q ss_pred --EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 867 --~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
.+..-.-....++-+| +|+++++++ ||.-.||..-..+ ..+.+......|++|....+.--.++.|+++
T Consensus 344 vKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~-- 414 (794)
T KOG0276|consen 344 VKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF-- 414 (794)
T ss_pred hhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence 1111111234678889 898887665 8888888632211 1244666788899998888888778899998
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
++.+..+.+.... ...+--.|.+|.+.+++.+++||..++..++.+... ...+.|+.+|.+++.
T Consensus 415 knfke~ksi~~~~----------~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai 478 (794)
T KOG0276|consen 415 KNFKEHKSIRPDM----------SAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAI 478 (794)
T ss_pred ecceecccccccc----------ceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEE
Confidence 5554433332221 122223456677778999999999999999988653 458899999999888
Q ss_pred EecCCcEEEEec
Q 001190 1025 TFCDGNIGVFDA 1036 (1128)
Q Consensus 1025 ~~~dg~i~vwd~ 1036 (1128)
++.|. .+|+..
T Consensus 479 ~~d~S-fyil~~ 489 (794)
T KOG0276|consen 479 AGDDS-FYILKF 489 (794)
T ss_pred EecCc-eeEEEe
Confidence 87554 455443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=314.37 Aligned_cols=550 Identities=17% Similarity=0.249 Sum_probs=387.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
.+..|-.++|+|... ++.++-..|.|++||++-+.++.. +.+|+++|+.++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456789999999988 678888999999999999888764 889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|++|-.|+||++.+.+++. ++.||-+.|+.+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987765 6889999999999999888 899999999999999 99999999999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCC-----------------------------ceeeecCCCCeEEEEEEcCCCCe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|+|.+ ..++++|-|.+||+||+...+ .+..+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 489999999999999984211 12356678889999999999999
Q ss_pred EEEeeeccCCCceEEEEeCCCCc--eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+++|+. |..|++|.....+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|+|||+.....++++.... .
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--d 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--D 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--C
Confidence 999984 8899999987665 4667889988 89999999999999999999999999999999999987543 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1128)
+.+.++.+|..++++.|.+.|. .+|.+... +.. .+++
T Consensus 294 RFW~laahP~lNLfAAgHDsGm-~VFkleRE-rpa-----------------~~v~------------------------ 330 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSGM-IVFKLERE-RPA-----------------YAVN------------------------ 330 (1202)
T ss_pred eEEEEEecCCcceeeeecCCce-EEEEEccc-Cce-----------------EEEc------------------------
Confidence 7899999999999988876554 45554321 000 0110
Q ss_pred CcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
+..|.-. .|..|+.
T Consensus 331 -----------------------------------------------------------------~n~LfYv-kd~~i~~ 344 (1202)
T KOG0292|consen 331 -----------------------------------------------------------------GNGLFYV-KDRFIRS 344 (1202)
T ss_pred -----------------------------------------------------------------CCEEEEE-ccceEEe
Confidence 0001111 1334444
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEE-
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMT- 866 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~- 866 (1128)
+|+.+....+ +-.++.+ + ....+++++.++|....+..++ .+.-.++.+.......
T Consensus 345 ~d~~t~~d~~-----------v~~lr~~--------g-~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~ 404 (1202)
T KOG0292|consen 345 YDLRTQKDTA-----------VASLRRP--------G-TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS 404 (1202)
T ss_pred eeccccccce-----------eEeccCC--------C-cccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC
Confidence 4443211000 0000000 0 1245688899999777666664 3555555543221100
Q ss_pred --EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 867 --~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
.-........++-... +++.+.--.+..+.+-++.+. ..+++... ..+..+-+...|.+|+.. ...|.++|+
T Consensus 405 ~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdv 478 (1202)
T KOG0292|consen 405 DGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDV 478 (1202)
T ss_pred CchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEe
Confidence 0000112233443332 233333333555666555433 22333321 244556666667666543 346999999
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
+.++.+..+.. ..+..+.||+|..+++.-+...|.|++.. .+.+..+.. .-.|.+-+|..||-+|++
T Consensus 479 Qq~~~~~si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE----tiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 479 QQKKKVGSIKV--------SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE----TIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred ecceEEEEEec--------CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----eeEeeeceeccCceEEEE
Confidence 98776555444 67899999999999998888999999854 233333322 567788889888888887
Q ss_pred EecCCcEEEEecCCCc--eEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1025 TFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1025 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.... |+ |-+.+|. .+.++. .+.+++.+ .++.+.+-..|+.+.+.++.-.|
T Consensus 546 T~nH--ik-Yal~~GD~GIikTLd-------------~~iyitkv-----~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 546 TLNH--IK-YALENGDSGIIKTLD-------------KPIYITKV-----KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ehhh--hh-hhhccCCcceEEecc-------------cceEEEEe-----eCCEEEEEecCCCeEEEeechHH
Confidence 6632 22 2333322 222333 34556666 47888888888888887765443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=278.93 Aligned_cols=283 Identities=16% Similarity=0.253 Sum_probs=239.0
Q ss_pred CcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEcc
Q 001190 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~ 436 (1128)
.-+|++++.|.+|++|...+|.+..+ +...++.|..+...||++.||+++.. .|++||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEcc
Confidence 44899999999999999999998764 45567889999999999999998765 59999999
Q ss_pred CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec
Q 001190 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 516 (1128)
++.+. ...++.+|++.|+++.|..||+ .++|||+||+++|||.......+...|..+|+++..+|. ..-|++|..
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn--QteLis~dq 144 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN--QTELISGDQ 144 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCC--cceEEeecC
Confidence 98764 4457999999999999999999 899999999999999333444555568899999999884 468999999
Q ss_pred cCcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC------ceeeEeccccCCcee
Q 001190 517 DGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNG 589 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~v~ 589 (1128)
+|.|++||+....+...+..+ ...|.++.+.|||.+++.+. ..|..++|++-+. +++..++.|.. -+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 999999999887666655443 45899999999999999887 4889999998764 35566777776 788
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccccccc
Q 001190 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1128)
Q Consensus 590 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1128)
.+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++|+.|+.+++|++..+ +..+...
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~ 297 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQ 297 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecC
Confidence 8999999999999999999999999988 4444445566678999999999999999999999999999998 4444555
Q ss_pred CC
Q 001190 670 NP 671 (1128)
Q Consensus 670 ~~ 671 (1128)
+|
T Consensus 298 gh 299 (311)
T KOG0315|consen 298 GH 299 (311)
T ss_pred Cc
Confidence 54
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=283.50 Aligned_cols=525 Identities=16% Similarity=0.217 Sum_probs=381.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--------eEEEEe-c
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE-L 482 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--------~i~vWd-~ 482 (1128)
+-+-|.|..+.-.. +.+.+++++..... -+.+|+..|.|++.+||-- .+++|-.-| .+++|| .
T Consensus 71 ly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWdsv 142 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDSV 142 (626)
T ss_pred eEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeecccc
Confidence 45667777655432 34567777553211 2669999999999999876 677665544 599999 8
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEE--eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+-..++.+......|.+++|++...|.++... +.+..+.+||...+............+....|.|.+..++...
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~--- 219 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC--- 219 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe---
Confidence 88888988888888999999998877777665 3456788999988777766666777889999999776555444
Q ss_pred CCCceEEEEeCCCCceee---EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 561 DGDSFLVEWNESEGTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
+.+.+..|+.+.+.+.+ .|+.+....|.|++|.++|. +++|..+|.|.||+..+.+..+... .|.+.|.+++.
T Consensus 220 -Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~ 295 (626)
T KOG2106|consen 220 -GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCM 295 (626)
T ss_pred -CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEE
Confidence 48999999999886654 46666666799999999875 7899999999999998888777766 44558999999
Q ss_pred cCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccC
Q 001190 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1128)
-.+|.+|- |+.|..|..||- ..+..+.. ......+++..++=...+
T Consensus 296 lr~GtllS-GgKDRki~~Wd~--~y~k~r~~---elPe~~G~iRtv~e~~~d---------------------------- 341 (626)
T KOG2106|consen 296 LRDGTLLS-GGKDRKIILWDD--NYRKLRET---ELPEQFGPIRTVAEGKGD---------------------------- 341 (626)
T ss_pred ecCccEee-cCccceEEeccc--cccccccc---cCchhcCCeeEEecCCCc----------------------------
Confidence 99997666 999999999992 22222222 222233445544322111
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccC
Q 001190 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1128)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~ 797 (1128)
++.|...+.|-.=.+. ..... .. .+|......++..|+...+++++.|+.+++|+-.
T Consensus 342 -----------i~vGTtrN~iL~Gt~~-----~~f~~-~v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--- 398 (626)
T KOG2106|consen 342 -----------ILVGTTRNFILQGTLE-----NGFTL-TV---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--- 398 (626)
T ss_pred -----------EEEeeccceEEEeeec-----CCceE-EE---EecccceeeEEcCCChhheeeccCcceEEEccCC---
Confidence 2222222222111111 11111 11 3488899999999999999999999999999711
Q ss_pred CCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCee
Q 001190 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST 876 (1128)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~ 876 (1128)
--.|... ..+++.|+.|+|.| .+|.|. .|...+.|+++...+..-.. ..+++
T Consensus 399 ------------k~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 399 ------------KLEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred ------------ceeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 0123221 46789999999999 888887 89999999999666555444 88999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecc-cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce--
Q 001190 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS-- 952 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~-- 952 (1128)
+++|+| +|.+||.|+.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+-+.|-.|-.|....-+....
T Consensus 452 ~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 452 VVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 999999 9999999999999999999754 333222 23348999999999999999999999999994332221111
Q ss_pred ----------eEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCE
Q 001190 953 ----------VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 1021 (1128)
Q Consensus 953 ----------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1021 (1128)
+-+...-+.....+..++-+.+.+++++++ .|.|++|...-...-.......+|++-|++++|+.+...
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 111222233335666777788888999986 689999987654443333333456999999999999999
Q ss_pred EEEEecCCcEEEEec
Q 001190 1022 VFATFCDGNIGVFDA 1036 (1128)
Q Consensus 1022 l~t~~~dg~i~vwd~ 1036 (1128)
+.+.+.|.+|..|++
T Consensus 611 li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 611 LISTGKDTSIMQWRL 625 (626)
T ss_pred EEecCCCceEEEEEe
Confidence 988779999999987
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=307.53 Aligned_cols=482 Identities=18% Similarity=0.297 Sum_probs=353.6
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..-+..|..++|+|...+++++-.+|.|++||..-+.++. .|..|.++|+.++|+|.+. +++||++|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467789999999999999999999999999999988776 5889999999999999999 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+.+++.++.||-+.|..+.||+. -.+|+++|.|.+|++|++.+.+++..+++|.+-|.|..|.|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999884 379999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCCCc-----------------------------eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
|.+|++||+...+ ....+.||.. .|.-++|+|.-..+++|+.|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985311 1234567766 7888999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 691 (1128)
|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|+|||+.... .++.++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-~v~tfr---------------------- 289 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-SVQTFR---------------------- 289 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-ceeeee----------------------
Confidence 999877766655566788899999999999999999999999999987641 111110
Q ss_pred ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEE
Q 001190 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1128)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1128)
...++.+.++
T Consensus 290 ----------------------------------------------------------------------rendRFW~la 299 (1202)
T KOG0292|consen 290 ----------------------------------------------------------------------RENDRFWILA 299 (1202)
T ss_pred ----------------------------------------------------------------------ccCCeEEEEE
Confidence 0345667888
Q ss_pred EecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC
Q 001190 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1128)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 851 (1128)
..|..+.+++ +.|+-+.++.++. +.++. ++ ++..|....|
T Consensus 300 ahP~lNLfAA-gHDsGm~VFkleR-----------------------------------Erpa~--~v--~~n~LfYvkd 339 (1202)
T KOG0292|consen 300 AHPELNLFAA-GHDSGMIVFKLER-----------------------------------ERPAY--AV--NGNGLFYVKD 339 (1202)
T ss_pred ecCCcceeee-ecCCceEEEEEcc-----------------------------------cCceE--EE--cCCEEEEEcc
Confidence 8898885555 4555556665431 22233 33 3344444558
Q ss_pred CeEEEEECCCceEE--EEeeCC---CCCeeEEEEcCCCCCEEEEEeCC-CcEEEEecccceee----ecccccccCeeEE
Q 001190 852 GKISLFNMMTFKVM--TTFMSP---PPASTFLAFHPQDNNIIAIGTED-STIHIYNVRVDEVK----SKLKGHQKRITGL 921 (1128)
Q Consensus 852 g~i~vwd~~~~~~~--~~~~~~---~~~v~~l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~----~~l~~h~~~V~~l 921 (1128)
..|+-+|+.+.+-. ..++.. ..++.++.|+|..+..+++...| |.-.++.+...... .... ......++
T Consensus 340 ~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~ 418 (1202)
T KOG0292|consen 340 RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL 418 (1202)
T ss_pred ceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhh-cCCCCceE
Confidence 88999999875543 334332 25688999999555555554433 44445544432110 0000 11122233
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 1001 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~ 1001 (1128)
|-...++.+---.+..+.+=++.+... +.+... .....+-+..+|.+|+. +...|.+||+...+.+..+.
T Consensus 419 -fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 419 -FVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred -EEEecceEEEEecCcceEEecccchhh-hcccCc-------ccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe
Confidence 322223333223355566666655321 111111 23445566666665544 56789999999888887776
Q ss_pred cCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1002 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1002 ~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-..|..+.||+|+.+++.-+ ..+|.|.+. ..+.++.+.
T Consensus 489 -----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k-kL~l~~sih 526 (1202)
T KOG0292|consen 489 -----VSKVKYVVWSNDMSRVALLS-KHTITIADK-KLELLCSIH 526 (1202)
T ss_pred -----cCceeEEEEcCccchhhhcc-cceEEEEec-chhheecch
Confidence 57789999999999888765 557888874 355555554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=271.90 Aligned_cols=296 Identities=15% Similarity=0.222 Sum_probs=251.5
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc--eeeEeccccC
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~ 585 (1128)
.-+|++++.|.+||+|...++.+..++......|+.+.+.||++.|++++ ...|++||+++++ ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999986 7789999999875 6899999987
Q ss_pred CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccc
Q 001190 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1128)
.|..+.|..+|+++++||+||+++|||++.......+. +..+|+++..+|+...|++|..+|.|++||+.+....-
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 89999999999999999999999999999965555554 34589999999999999999999999999997652110
Q ss_pred ccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (1128)
.+
T Consensus 161 -~l----------------------------------------------------------------------------- 162 (311)
T KOG0315|consen 161 -EL----------------------------------------------------------------------------- 162 (311)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred EeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccc
Q 001190 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1128)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1128)
+|+ ....|.++.+.|||..++++...|..++|++...... +...-...+
T Consensus 163 -----------iPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~P~~k~ 211 (311)
T KOG0315|consen 163 -----------IPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------------SELEPVHKF 211 (311)
T ss_pred -----------CCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------------ccceEhhhe
Confidence 111 3356889999999999999999999999998652210 000000112
Q ss_pred cCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
. .|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |++||++|+.|+.+++|++.
T Consensus 212 ~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 Q--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred e--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 2 3889999999999999999998 899999999998 66778889999999999999 99999999999999999999
Q ss_pred cceeeecccccccCeeEEEEc
Q 001190 904 VDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s 924 (1128)
.++.++...+|..+-.|++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999999988888764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=278.51 Aligned_cols=297 Identities=18% Similarity=0.237 Sum_probs=245.4
Q ss_pred CCCcccEEEEEEecCc-ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.+.|+.++..+.+ ..++.++.|.++.+|++...+ ...|.... .+.| |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-----------------~~~G~~~r-~~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-----------------IKYGVPVR-RLTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-----------------cccCceee-eeec--cceEecceEE
Confidence 3499999999999874 567788889999999987542 22333222 3455 9999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc-cccC
Q 001190 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKR 917 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~ 917 (1128)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...........+ |++-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999998 99999999999999999999999999999999 899999999999999999876544433332 3788
Q ss_pred eeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc
Q 001190 918 ITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM 994 (1128)
Q Consensus 918 V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~ 994 (1128)
|.++.|+|+ ..+++++|.|++|++||+.+-+....+. +|. ..++.+++||||.++++|. ||.+.+||++.+
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----ccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 999999998 6799999999999999999966544433 333 7899999999999999975 999999999999
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
+.+..+.. ...|.+++|+|+--+|+.+ .+..|+|||++++..+..+.+..-.+.. .......+.++|++ ||
T Consensus 225 k~lysl~a----~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~---~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 225 KNLYSLEA----FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSS---KAGDPICLSLAWSA-DG 295 (315)
T ss_pred ceeEeccC----CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccccc---ccCCcEEEEEEEcC-CC
Confidence 99777765 7899999999987766655 5667999999999998877743222211 13345678999999 79
Q ss_pred CEEEEEECCCcEEEEcCCC
Q 001190 1075 NQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd~~~ 1093 (1128)
..|++|..|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999998753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=291.92 Aligned_cols=291 Identities=20% Similarity=0.326 Sum_probs=264.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.......+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... ++||+..|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 44445567999999999999987 889999999999999999998654 9999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+..|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|.|. +++|++.|.+|+.|+ .+|.++.++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233336789999999999999998 899999999999999 999999999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC---------------CeEEEeee
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---------------SRLFSCGT 558 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g---------------~~l~~~~~ 558 (1128)
...|..+..+ .||.++++++.|.++++|-+.++.+...+..|.++|.+++|.|.. .++.+++
T Consensus 235 ~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S- 311 (406)
T KOG0295|consen 235 SEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS- 311 (406)
T ss_pred hHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-
Confidence 9999999974 488999999999999999999999999999999999999986642 3566665
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.|++|++||+.++.++.++.+|.+ -|..++|+|.|+||+++.+|+++++||++++++...+..+.+ -++++.|+
T Consensus 312 ---rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 312 ---RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ---ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 599999999999999999999998 899999999999999999999999999999999999997776 68999999
Q ss_pred CCCCEEEEEEcCCcEEEEEc
Q 001190 639 KEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999964
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=295.92 Aligned_cols=283 Identities=22% Similarity=0.325 Sum_probs=248.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+ .+|+ .++..|+.+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4457999999999995 68999999999999632 2222 23778999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+|+.+|.|++|+.+-.. ++ .+.+| ...|++++|+|... .+++|++||+|+||| ...+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987643 22 24444 58999999999888 899999999999999 8888888999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
.|+|.. ..|++++.|..|++||.+++.+..++..|...|..+.|++++++|++++. |..++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999965 59999999999999999999999999999999999999999999999984 899999999999999999
Q ss_pred ccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 581 AGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..|...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 566778999999999998666666554 3566689999999999999999999999999754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=278.22 Aligned_cols=329 Identities=15% Similarity=0.201 Sum_probs=277.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.|..|++.|.+++.+|+.+++|+|+.|..-.+|++.+|+... .+.+|+..|+++.|+.||. +||||+-+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 377899999999999999999999999999999999998554 5889999999999999999 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+ .+|.....+...-..|.-+.||| -+.+|+.|+.||.+.+|.+........+.+|..++++=.|.|||++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 88888888876677788899998 4579999999999999999998888899999999999999999999999984
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC------CCC---C
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGL---P 630 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~---~ 630 (1128)
+++|++|+..+++++..+....+....++.++..+..++.|+.++.+++-+..+|+.+...... ++. .
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999998777767888999999999999999999999999999887766521 111 1
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1128)
.|.++.++..-++.|+|+-||+|.|||+.... +
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~--------------------------------------------- 320 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--L--------------------------------------------- 320 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--h---------------------------------------------
Confidence 22333333444556666666666666653320 0
Q ss_pred CcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
T Consensus 321 -------------------------------------------------------------------------------- 320 (399)
T KOG0296|consen 321 -------------------------------------------------------------------------------- 320 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEee
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM 869 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 869 (1128)
. ... .|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.
T Consensus 321 ------------------------------R--~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 321 ------------------------------R--HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred ------------------------------h--eec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence 0 000 1777788888888 55666665 9999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 366 GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 GHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999999 99999999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=278.36 Aligned_cols=338 Identities=17% Similarity=0.254 Sum_probs=285.7
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
+|..|++.|.+++.+|+.. +++||+.|....+|+ .+|.....+.+|...|+++.|+. +|.+|+||+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5889999999999999777 899999999999999 89999999999999999999976 779999999999999999
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
..++.....+......+.=+.|.|.+..|++++. |+.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999998877788999999999999999884 99999999999999999999887 899999999999999999
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeee
Q 001190 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1128)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 684 (1128)
.||+|++||..+++++..+....+ ....++.++..+..+..|+.++.+++-+..+++... ..
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~-~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN-CN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEE-ec----------------
Confidence 999999999999999998875443 356889999999999999999988887655441100 00
Q ss_pred eecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCc
Q 001190 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (1128)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (1128)
+
T Consensus 272 ---n---------------------------------------------------------------------------- 272 (399)
T KOG0296|consen 272 ---N---------------------------------------------------------------------------- 272 (399)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
+.+..+.. +.+ .....|..+.++..-.
T Consensus 273 ---------~~~~~l~~-~~e-------------------------------------------~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 273 ---------GTVPELKP-SQE-------------------------------------------ELDESVESIPSSSKLP 299 (399)
T ss_pred ---------CCCccccc-cch-------------------------------------------hhhhhhhhcccccccc
Confidence 00000000 000 0122344455555667
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEE
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 923 (1128)
+.|+|+ ||+|.|||+...++...+. |...|+.+.|.+ ..+|++++.||.|+.||.++|+++.++.||..+|.++++
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 788888 9999999998877766665 888899999986 468899999999999999999999999999999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECC
Q 001190 924 STSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 924 s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+|++++++|+|.|++.+|+++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=288.59 Aligned_cols=280 Identities=20% Similarity=0.290 Sum_probs=253.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
.+..|++++|+.+|. +||+|+.||.++||+.. |.++.. +..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 346799999999999 89999999999999975 444432 778999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+++.|+++.+||..+|+... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ....++.++.||.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987665 3667888888999988776 89999999999999 77788999999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC---------eEEEeeeccCCCceEEEEeCC
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS---------RLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~---------~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|.+ .+.+|++++.|+++++|..........+..|...|..+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 966 568999999999999999988888889999999999999999764 6777774 9999999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
.+.++.+|..|.. +|..++|+|+|.++++|+.||.|.+|+..+++.++.....+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999987 89999999999999999999999999999999999987544 4899999999999999999999
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
+.+.|++
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=273.17 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=248.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.+...+|++.|..+.|+|+|. ++|+|+.|..|.+|++..... ..-.+++|.+.|..+.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGMR 100 (338)
T ss_pred hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeecc
Confidence 444567999999999999999 889999999999999754321 1123889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
|+..|++++.|++|+.||+++|++.+ .+.+|..-|+++.-+.-|.. ++.|++.|+++++|| .+...++++. ...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence 99999999999999999999999887 47799999999996666766 789999999999999 6666666664 455
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-- 573 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-- 573 (1128)
.++++.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+. |.++++||++.
T Consensus 176 qltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 176 QLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFA 249 (338)
T ss_pred eEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccC
Confidence 689999854 5578999999999999999999999999999999999999999999999986 99999999874
Q ss_pred --CceeeEeccccCC---ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 574 --GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 574 --~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+++..+.++.-. ....++|+|++..+-+|+.|..+++||......+..++++ ...|++++|+|...+|.+++
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEec
Confidence 3457778776431 2445789999999999999999999999888888888754 55899999999999999999
Q ss_pred cCCcEEEE
Q 001190 649 ADNGFKIL 656 (1128)
Q Consensus 649 ~dg~i~iw 656 (1128)
.|.+|++=
T Consensus 328 sdk~i~lg 335 (338)
T KOG0265|consen 328 SDKTIYLG 335 (338)
T ss_pred cCceeEee
Confidence 99998763
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=280.00 Aligned_cols=292 Identities=17% Similarity=0.272 Sum_probs=259.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
-.+.+.+ +|.++|.|+++.|-+. ++++|+.|++|+|||+.+|++..+ +.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 3344444 4999999999999987 889999999999999999998754 899999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~ 492 (1128)
+|+--.||++++.|+.|+-||++..+.++ .+.||-..|++++..|.-. +|++|+.|.+++||| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999988877 4779999999999999888 899999999999999 88899999999
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++..|....+++++ ...|+-|++.
T Consensus 276 H~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 9999999998654 35799999999999999999999999999999999999999999999987 4469999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe---cCC---CCCCcceEEEcCCCCEEEE
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~sp~~~~l~~ 646 (1128)
.|..++.+.+|.. .+.+++...| .++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999887 8888888876 488999999999999999986655432 222 2335789999999999999
Q ss_pred EEcCCcEEEEEccc
Q 001190 647 TTADNGFKILANAI 660 (1128)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1128)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=263.46 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=248.2
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
+|......+. |.++|.++.|+-||+ +..+++.|.+|++||...|.++++ +.||...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeee
Confidence 3444444454 899999999999999 566677899999999999998865 8899999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe---cCCCeEE
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLF 488 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd---~~g~~~~ 488 (1128)
++.+.|+..+++|+.|+.|.+||+++|+.++ .+.+|.+.|+.+.|..+.. .+++|+.|.++++|| .+-++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999887 5889999999999999998 899999999999999 4567889
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+....+.|.++.+ .+..|++|+.||++|.||++.+.... ..-+++|++++|++||+..++++. ++.+++
T Consensus 140 ildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l----~stlrL 209 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSL----DSTLRL 209 (307)
T ss_pred hhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeec----cceeee
Confidence 99888899999987 34679999999999999998765543 345678999999999999998885 899999
Q ss_pred EeCCCCceeeEeccccCCce-eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
.|-.+|+++..+++|.+... ..+++.....++++|++||.|++||+.....+..+..++. ..|.+++++|.-..++++
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence 99999999999999987433 2367777788999999999999999999999988877654 247899999987777777
Q ss_pred EcCCcEEEEEc
Q 001190 648 TADNGFKILAN 658 (1128)
Q Consensus 648 ~~dg~i~iw~~ 658 (1128)
.. +.+..|.-
T Consensus 289 ~~-~~~~~~~~ 298 (307)
T KOG0316|consen 289 TG-HGDLFWYQ 298 (307)
T ss_pred cC-Cceeceee
Confidence 64 44556643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=263.20 Aligned_cols=286 Identities=19% Similarity=0.329 Sum_probs=235.1
Q ss_pred ecCCCcEEEEEEeCC-CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 341 LHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspd-g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
-+|.+.|+.++|+|- |. +||+|+.|+.|+||+...+..... ...+-.+|+..|+++||+|.|+
T Consensus 11 ~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred cCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCc
Confidence 359999999999999 87 899999999999999875433221 1123457999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC---CeEEEecCCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEA 495 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g---~~~~~~~~h~~ 495 (1128)
+||+|+.|.++.||.-..++ .....++.||...|.+++|+++|. +||+|+.|+.|-||. ..+ .++..+.+|..
T Consensus 75 ~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999999999877654 344557999999999999999999 899999999999999 433 45688999999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCC---CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
.|..+.|||.. .+|++++.|++|++|+-.. -.+..++.+|...|.+++|++.|..|++++ .|++++||-..
T Consensus 152 DVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s----dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 152 DVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS----DDGTVSIWRLY 225 (312)
T ss_pred cccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec----CCcceEeeeec
Confidence 99999999976 5999999999999997653 234668888888999999999999999998 59999999755
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe------eeEEEecCCCCCCcceEEEcCC-CCEEE
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNLLA 645 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-~~~l~ 645 (1128)
..+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ....|...|++++|+|. .++|+
T Consensus 226 -----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 226 -----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred -----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCcee
Confidence 33444454578888888 5689999999999999866421 1111 12234458999999994 78999
Q ss_pred EEEcCCcEEEEEcc
Q 001190 646 VTTADNGFKILANA 659 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~ 659 (1128)
++++||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=282.13 Aligned_cols=640 Identities=16% Similarity=0.206 Sum_probs=360.0
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
-+.-.|.+.|+.+.|||-...|||+||.|..|+||.+..|-... +......+.+..-.|-|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccC
Confidence 33345999999999999877799999999999999997543221 11122335555668999999997
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~ 495 (1128)
..-|+..+..|+++|||+.+++.+. .+.+|...|.+..|+.||+ +|++.+.|+.|+||| ..++.++...+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7777777788999999999988665 5889999999999999999 899999999999999 78899999999986
Q ss_pred C-eEEEeccCCCCccEEEEEecc----CcEEEEecCCCCcee-eecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 496 P-VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 496 ~-v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~-~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
. -..+.|.. +-..|++.+.+ ..|++||.+...... ++... ...|.---|.||.++++.++. ++..+..
T Consensus 215 ~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred chhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEE
Confidence 3 23345533 43466666654 578999987654332 22222 124566678999999988875 7888888
Q ss_pred EeCCCCceee--EeccccCCceeEEEEeCCCCEEEEEEC-CC--------------------------------------
Q 001190 569 WNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGE-DS-------------------------------------- 607 (1128)
Q Consensus 569 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg-------------------------------------- 607 (1128)
+.+...+... .++..-.......++-|....-+..++ +.
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 8876544211 111000000011111111000000000 00
Q ss_pred -cEEEEECCCCeeeEEEec------CCC----------------CCCcceEEEcCCCC-EEEEEEc-------------C
Q 001190 608 -QIKFWDMDNVNILTSTDA------EGG----------------LPNLPRLRFSKEGN-LLAVTTA-------------D 650 (1128)
Q Consensus 608 -~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~v~~sp~~~-~l~~~~~-------------d 650 (1128)
.---|=-.+.+.+..... |+. ...|......|... ..-..+. .
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 000011011111111100 000 00000000001000 0000000 0
Q ss_pred CcEEEEEcccCccccccccCC----ccccccCcceeeeeecccccccccCC-CCcceecccCCCCC-------cccccCC
Q 001190 651 NGFKILANAIGLRSLRAVENP----PFEALRTPIESVALKVSASSAVSSGT-PANCKVERSSPVRP-------SPIINGV 718 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~-------~~~~~~~ 718 (1128)
..++-.+.+..+.......+. ......+++..+ +|....++--.+ +-...+..-..+.+ .+.-.+.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~ 527 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNF 527 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCccc
Confidence 000000000000000000000 000000111100 010000000000 00000000000000 0000000
Q ss_pred CCCCCCCCCCcccCCC------CCCCCcceeEEEeeCCceeEEEecCCCCCcc----cEE---------EEEEecCcceE
Q 001190 719 DPTSRSMDKPRTVDDV------TDKPKPWQLAEIVDSGQCRLVTMPESTDTSS----KVV---------RLLYTNSAVGL 779 (1128)
Q Consensus 719 ~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~i~---------~l~~s~~g~~l 779 (1128)
....+.......+.+. -|.+.-|.- +.+..+|.+ ... +--|+.+..++
T Consensus 528 g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH-------------~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rv 594 (1012)
T KOG1445|consen 528 GKPISATNRVPLSQSVRPKSCVVGQISKFRH-------------VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRV 594 (1012)
T ss_pred CCCccccccccccccccccceeeccchheee-------------ccCccccchhhhhhhhcccccCCCccCceeeccceE
Confidence 0000000000000000 011111110 111111111 111 11123334444
Q ss_pred E--EeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCeEE
Q 001190 780 L--ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKIS 855 (1128)
Q Consensus 780 ~--~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~ 855 (1128)
+ ..+..|.|-||++......|+|.. .++.....|+.+.|.| |...||++. ||.|+
T Consensus 595 AVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~ 653 (1012)
T KOG1445|consen 595 AVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQIN 653 (1012)
T ss_pred EEEecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEE
Confidence 4 345578999998876554444432 2223567799999999 778888887 89999
Q ss_pred EEECCCc-------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 856 LFNMMTF-------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 856 vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|.+..+ .....+..|...|+++.|+|-...+|++++.|-+|++||+.+++....+.+|++.|.+++|||||+
T Consensus 654 lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 654 LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence 9998754 345667889999999999997778999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-----ecCeEEEEecCCcc--cccccc
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-----HETQLAIYDASKME--RIRQWT 1001 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-----~d~~i~v~d~~~~~--~~~~~~ 1001 (1128)
.+|+.+.||+|++|+-.+++. ++....+........+.|.-||+++++. ++.+|.+||..+.. .+....
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 999999999999999988764 2232333333566789999999999874 36779999987544 222221
Q ss_pred cCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCceE
Q 001190 1002 PQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLRLR 1042 (1128)
Q Consensus 1002 ~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~ 1042 (1128)
..- ...+.--.|.+|.. ++++|-.|..|++|.+-.-+..
T Consensus 810 lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 810 LDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred ecc--cCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 111 22223334566665 4557889999999998665543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=315.09 Aligned_cols=284 Identities=22% Similarity=0.375 Sum_probs=250.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|...|.|+.|||+|+ ++++++.|+.|++|+..+++ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 588999999999999 58999999999999997666 322 26889999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+|+++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 6889999999999999997 899999999999999 88999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+++|.+ ++.+|++++.||.|++||+.++. ....+..+.. +++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999966 77899999999999999999888 3344444444 5999999999999999984 889999999999
Q ss_pred ceeeEeccccCC--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE--cC
Q 001190 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1128)
Q Consensus 575 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d 650 (1128)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999885 23334557789999999999999999999999998888774 55789999999999999998 68
Q ss_pred CcEEEEEc
Q 001190 651 NGFKILAN 658 (1128)
Q Consensus 651 g~i~iw~~ 658 (1128)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 89999965
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=280.47 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=235.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....|.|+.+..+ .+++|..|++|+|||.++-.++. .+.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4568999999743 46999999999999998877664 39999999999999 466999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecCCCCCeE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~h~~~v~ 498 (1128)
+|+.|.+|+|||+++|+++. ++.+|...|..+.|+.. +++|++.|.++.+|| .+.. +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 57799999999999843 799999999999999 4333 2367789999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
.+.| +.+++++++.|.+|++|++.+.....++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9998 4479999999999999999999999999999999988876 5778888875 9999999999999999
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee-------EEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-------TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
.++||.. -|.++.|. .+.+++|+.||+|+|||+..+... .......+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999998 89999995 579999999999999999876532 11222344557889998 667899999999
Q ss_pred cEEEEEcccCc
Q 001190 652 GFKILANAIGL 662 (1128)
Q Consensus 652 ~i~iw~~~~~~ 662 (1128)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=267.72 Aligned_cols=525 Identities=13% Similarity=0.154 Sum_probs=377.4
Q ss_pred EEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC--------cEEEEecCCC
Q 001190 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG--------KIKAWLYDTM 528 (1128)
Q Consensus 457 l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~~wd~~~~ 528 (1128)
+-+.|.|..++++. ..+.+++...+..+-+.||...|.|++++|+. -.+++|-.-| .+++||..+.
T Consensus 71 ly~lptgE~vyfvA----~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~~phvriWdsv~L 144 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA----AVGVLYNWEERSQRHYLGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPLQPHVRIWDSVTL 144 (626)
T ss_pred eEEccCccEEEEec----cEEEEEeehhhhcccccCCCCceEEEeecCCc--eeeccCcccccCCCcCCCeeeecccccc
Confidence 55667776322222 24455563344456678999999999999843 4555554333 5899997777
Q ss_pred CceeeecCCCCeEEEEEEcCC--CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 529 GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.....+......|.+++||+- |..+... +...+..+.+||-..+......+.... .+..+.|+|.+..+++....
T Consensus 145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v--D~s~~h~lSVWdWqk~~~~~~vk~sne-~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 145 STLHVIGFFDRGVTCVAFSKINGGSLLCAV--DDSNPHMLSVWDWQKKAKLGPVKTSNE-VVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred eeeeeeccccccceeeeecccCCCceEEEe--cCCCccccchhhchhhhccCcceeccc-eEEEEEeccCCCcEEEEeCC
Confidence 777777766778999999984 3344433 334577889999988877776666554 78889999988888887788
Q ss_pred CcEEEEECCCCeeeEEE---ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 607 SQIKFWDMDNVNILTST---DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
|.+++|+++.+.+.+.. ..+.. ..|.|++|.++|. +++|..+|.|.||+..+. +..++.. ++.+.|.++
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~-~~~k~~~-----aH~ggv~~L 293 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTN-RISKQVH-----AHDGGVFSL 293 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCc-eEEeEee-----ecCCceEEE
Confidence 99999999998776654 33333 5799999999985 679999999999998665 2222222 455667788
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
....+|.++ +|+.|+.|..||-. ....+.+.+|+ .
T Consensus 294 ~~lr~Gtll--------------------------------------SGgKDRki~~Wd~~----y~k~r~~elPe---~ 328 (626)
T KOG2106|consen 294 CMLRDGTLL--------------------------------------SGGKDRKIILWDDN----YRKLRETELPE---Q 328 (626)
T ss_pred EEecCccEe--------------------------------------ecCccceEEecccc----ccccccccCch---h
Confidence 887777655 68888999999932 45556666766 6
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
.+.|+.++-...+ ++.|...+.|..=.+ +++..+. .. .|.+....++..|+.
T Consensus 329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~----------------------~~~f~~~--v~--gh~delwgla~hps~ 380 (626)
T KOG2106|consen 329 FGPIRTVAEGKGD--ILVGTTRNFILQGTL----------------------ENGFTLT--VQ--GHGDELWGLATHPSK 380 (626)
T ss_pred cCCeeEEecCCCc--EEEeeccceEEEeee----------------------cCCceEE--EE--ecccceeeEEcCCCh
Confidence 6667766544333 666655544443222 1222111 11 288889999999999
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEE
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 922 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 922 (1128)
..+++++ |+.+++|+ ..++..+.. -..++.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..+++++.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVR 454 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEE
Confidence 9999988 99999999 444444433 356789999999 67 999999999999999999776655554 88999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc-
Q 001190 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW- 1000 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~- 1000 (1128)
|+|+|.+||.|+.|+.|.||.++.....-.... .....+++.+.||+|++++.+.+ |-.|..|....-+.+...
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~----k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG----KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEee----eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 999999999999999999999987553322221 12227899999999999999965 888999944332222210
Q ss_pred --------------ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 1001 --------------TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 1001 --------------~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
...-+|...|..++-+.+.+++|+|.+.|.|++|...--......... .+|...+.+
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~---------~ghs~~vt~ 601 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY---------GGHSSHVTN 601 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee---------ccccceeEE
Confidence 111235777888888999999999999999999998765544433311 256677899
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
++|.-. ..++++.+.|.+|..|++
T Consensus 602 V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 602 VAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEeeC-CceEEecCCCceEEEEEe
Confidence 999985 455666669999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=271.59 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=226.8
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+++.||.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4589999999999999999999999999999999999998655 6889999999999999888 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| ...+.++.+.||-..|.|++.+|.- ..|++|+.|.++|+||+++......+.+|..+|.++.+.|-.-.+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8899999999999999999999865 68999999999999999999999999999999999999998888999985
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+ ...|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeec
Confidence 99999999999999999998887 89999999999888888877 6899999999998886654 4478999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|+ ++++|++.|.+.+||..++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 886 7889999999999999887
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-29 Score=268.14 Aligned_cols=546 Identities=14% Similarity=0.142 Sum_probs=377.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC-CcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l 421 (1128)
...+|.|+|||.+.+ .||.|-.||.|.||++..+-.. ..++.|+ +..|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 466899999999988 5799999999999999875432 2345555 5689999999 55677
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--EEecCCCCCeE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~--~~~~~h~~~v~ 498 (1128)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+ ..++.. ..|....++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788899999999999988766 4667888999999999998 789999999887777 555444 33445568999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--------CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
++.|++ ++..+++|+.||.|++||...+........ ...-|.++.|-.++ .|+++- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999976 667899999999999999988877662221 22357888888666 455553 489999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--eEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...+... +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999987 899999999999999999999999998876633 222223334447899998877 899999
Q ss_pred cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCC
Q 001190 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1128)
.|.++.+-........... .. ...|.+..+ .....++
T Consensus 309 ~d~~l~i~~s~~~~~~~h~-----~~---------~~~p~~~~v-----------------------------~~a~~~~ 345 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHR-----QK---------NLFPASDRV-----------------------------SVAPENR 345 (691)
T ss_pred eeeEEEEccccccCchhhh-----cc---------cccccccee-----------------------------ecCccce
Confidence 9999887544331111111 00 000111110 0011122
Q ss_pred cccCCCCCCCCcceeEEEeeC-----CceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 729 RTVDDVTDKPKPWQLAEIVDS-----GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
+..--.+..+.+|.+...... ..+..+.++ ....|.+.+.+|+|+.++.+.- ...++|.+.... .
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~-----~ 415 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP-----N 415 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEeec-cceEEEEeccCc-----c
Confidence 222233355666665543211 122222222 4567999999999997665543 357777765321 0
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCce--EEEEee--CCCCCeeE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFK--VMTTFM--SPPPASTF 877 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~--~~~~~~--~~~~~v~~ 877 (1128)
.. +-... ... ...-....+.|+-|+..++.++ ...+.+++.++.. .+..+. +-...|..
T Consensus 416 vk------~~~v~-------~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 416 VK------VINVD-------DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ee------EEEec-------cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCccee
Confidence 00 00000 000 0233567788998988877776 4678888876543 333332 24557999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEe
Q 001190 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956 (1128)
Q Consensus 878 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~ 956 (1128)
++.|+ +|+++|+.+..|.|.+|++++++.......-...|++++|+| +...|+.+..|+.+.-||++..+..+.....
T Consensus 481 l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 481 LVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred EEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcc
Confidence 99999 999999999999999999998876544434457899999995 5568888999999999999654433222221
Q ss_pred e-----cCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecC
Q 001190 957 I-----PAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS 992 (1128)
Q Consensus 957 ~-----~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~ 992 (1128)
. ........+..+.|+|.....+.. +.+.+.+.|..
T Consensus 560 t~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 560 TRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 1 111112678888898876655554 45666676654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-29 Score=266.15 Aligned_cols=548 Identities=13% Similarity=0.155 Sum_probs=384.4
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
-..+|+++|||.+.+.||.+-.+|.|.||++..+=.... ++.++ ...|.+++|++.+ .|+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999998644333 45555 5689999999666 489999999999999 9
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+++++..+....+.|++++.++.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998754 6899999999777776655544432 3345578999999999999999985
Q ss_pred CCCceEEEEeCCCCceeeEec-----cc--cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 561 DGDSFLVEWNESEGTIKRTYA-----GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
|+.|++||+.++..+.... .. ....|+++.|-.+ ..|++|...|.|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766221 11 2224666666644 5799999999999999999999998887654 799
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
+++.++++.++.+++.|+.|.-+...++...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876654221
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
|-... ....|...+.++++.++ .+++++.|..+.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00227778888888887 7889999988877533
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCce---------E
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK---------V 864 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~---------~ 864 (1128)
.... ..+ .. +...+ .... -+...+..++++.-....+.+|.+.+.- +
T Consensus 319 ~~~~--------------~~~---h~-~~~~~----p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L 374 (691)
T KOG2048|consen 319 REFK--------------NMD---HR-QKNLF----PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL 374 (691)
T ss_pred cccC--------------chh---hh-ccccc----cccc--eeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence 2100 000 00 00000 1111 1233455555555557778888876541 1
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-----cccccccCeeEEEEcCCCCEEEEEc-CCCc
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLKGHQKRITGLAFSTSLNILVSSG-ADAQ 938 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~~h~~~V~~l~~s~d~~~l~s~~-~Dg~ 938 (1128)
.+........|.|.+.|| +|+++|.+. =..++||.+...-.++ ....-.-....+.|+-|+..++.++ .+..
T Consensus 375 lkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~ 452 (691)
T KOG2048|consen 375 LKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFS 452 (691)
T ss_pred eeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccce
Confidence 222223455699999999 999998876 4567888876522221 2222334577889999988887777 6778
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEee
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~ 1017 (1128)
+.+.++.+............ .....++.++.|+||.|+++. ..+.|.+|++++++.-...... ...|+.++|+|
T Consensus 453 le~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~ 527 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSP 527 (691)
T ss_pred eEEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeeccc
Confidence 88888887654443333322 233789999999999999996 4899999999988765544232 67899999996
Q ss_pred -CCCEEEEEecCCcEEEEecCCCceEEEeCC-CC-CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1018 -NSQLVFATFCDGNIGVFDADTLRLRCYIAP-ST-YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1018 -dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+-..|+.+..++.++-||++..+. .+... .+ .++.... .-...+..+.|+|.+...++.-+. +-+++.|.+
T Consensus 528 ~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~--~l~~~~~gisfd~~n~s~~~~~~a-~w~~~id~~ 601 (691)
T KOG2048|consen 528 FVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPK--TLIPGIPGISFDPKNSSRFIVYDA-HWSCLIDFS 601 (691)
T ss_pred cccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChh--hcCCCCceEEeCCCCccEEEEEcC-cEEEEEecC
Confidence 555788888999999999954331 11110 00 1111100 111234678888865555554443 555666654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=270.62 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=228.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 378899999999999999999999999999999999999865 6899999999999999999 89999999999999
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
| ..-+++..+.+|...|.+++|.|. |.++++++.|.+|+.|+++++-+..++.+|..+|..+..+.||..+++++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s- 254 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS- 254 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC-
Confidence 9 336788899999999999999885 47999999999999999999999999999999999999999999999998
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC---------------CCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
.+.++++|-+.++++...++.|.- ++.+++|-|. +.++.+++.|++|++||+.++.++.++
T Consensus 255 ---~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 255 ---NDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ---CCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 499999999999999999999987 8889888653 248899999999999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+|. ..|..++|+|.|++|+++.+|+++++||+++.
T Consensus 331 ~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 331 VGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred eccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 8665 48999999999999999999999999999876
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=259.68 Aligned_cols=250 Identities=18% Similarity=0.302 Sum_probs=217.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... ..+.++.+|.++|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4588999999999999999999999999999999976533 33446889999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+|+.++++++|..-|+++.... -+-.++.+++.||++++||++.......+. ....++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 99999999999999999998543 244678889999999999999776665543 3457999999999999999986
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCCCC--Cc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLP--NL 632 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~--~v 632 (1128)
|+.|++||++.......+.||.+ .|..+..+++|.++.+-+.|.++++||++.. +++..+..+.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 8999999999999999999999999998753 3466666554422 34
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
..++|+|++..+..|+.|..+++||...
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc
Confidence 5678999999999999999999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.80 Aligned_cols=290 Identities=16% Similarity=0.260 Sum_probs=243.6
Q ss_pred CCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
..|.+.|.-+.||++|++|++++.|.+..+|.+.. |.. ..+...+.+ |..+|..+.||
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tlvg--h~~~V~yi~wS 278 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTLVG--HSQPVSYIMWS 278 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeeeec--ccCceEEEEEC
Confidence 34999999999999999999999999999998642 222 122223444 99999999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cC
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KR 917 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 917 (1128)
||.++|++++ +..+.+||+.+|.+...+.. +...+.+.+|.| ||..+++|+.|+++..||++. ..+...++-. ..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPK 356 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc-chhhcccccccce
Confidence 9999999998 78899999999999888763 457899999999 999999999999999999874 4455555543 45
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCccc
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER 996 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~ 996 (1128)
|.++++++||+++++.+.|..|++++..+.........+ .++++++.|.||+++++. .+..+.+||++..+.
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-------~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-------QPITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-------CceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 999999999999999999999999999886544332222 789999999999999986 689999999999889
Q ss_pred ccccccCCCCCCCeEEEEEee-CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 997 IRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
++.+.++.. +.-+..-+|-. |.+++++|++|+.|+||+..+|.++..+. +|...+.+++|+|.++.
T Consensus 430 v~kY~Ghkq-~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls------------GHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 430 VRKYFGHKQ-GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS------------GHSKTVNCVSWNPADPE 496 (519)
T ss_pred HHHhhcccc-cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec------------CCcceeeEEecCCCCHH
Confidence 999888764 33444445543 66899999999999999999999999998 67788899999999999
Q ss_pred EEEEEECCCcEEEEcCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~ 1094 (1128)
++|+||+||+||||.+...
T Consensus 497 m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HhhccCCCCeEEEecCCcc
Confidence 9999999999999977643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=301.85 Aligned_cols=275 Identities=15% Similarity=0.199 Sum_probs=233.0
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....++|..|++|+..++.|..|..|++|.+...+..+ ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence 55678999999999999999999999999875321100 00 00000
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
..+=+.+ |-.+.+.|-.+....+++.+|.++|....|+| +.++|+++++|++||+|.+.+..++-.++||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 0111111 22255666666777778999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~ 1000 (1128)
.|+|.|-|+||+|.|++.++|..+....++.+ .+|- ..+.++.|+|+..|+++|+ |.++++||+.+|..++.+
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~PlRif-----aghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNKPLRIF-----AGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCCchhhh-----cccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe
Confidence 99999999999999999999999886554444 3444 7789999999999999975 999999999999999999
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~ 1080 (1128)
.+| .++|.+++|||+|++|++|++||.|.+||+.+|+.+..+. +|...+.++.|+. |++.||+|
T Consensus 574 ~GH---~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~------------~Ht~ti~SlsFS~-dg~vLasg 637 (707)
T KOG0263|consen 574 TGH---KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK------------GHTGTIYSLSFSR-DGNVLASG 637 (707)
T ss_pred cCC---CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh------------cccCceeEEEEec-CCCEEEec
Confidence 775 8999999999999999999999999999999999999888 6678889999999 79999999
Q ss_pred ECCCcEEEEcCCCCCC
Q 001190 1081 LTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1081 ~~dg~i~iWd~~~~~~ 1096 (1128)
|.|++|++||+..--.
T Consensus 638 g~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 638 GADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCCeEEEEEchhhcc
Confidence 9999999999987654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=251.64 Aligned_cols=293 Identities=16% Similarity=0.242 Sum_probs=233.9
Q ss_pred CCCcccEEEEEEecC-cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.+++..++|+|. |..|++++.|..|++|+..... -|.. .. .+.+ .|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~c-----k~-vld~-~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWTC-----KT-VLDD-GHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEEE-----EE-eccc-cchheeeeeee
Confidence 459999999999999 8899999999999999864210 0111 11 1111 48999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECC--CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc---eeeecccc
Q 001190 840 SKNDSYVMSAT-GGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKG 913 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 913 (1128)
+|.|++||+++ |.++.||.-. ..+++.++.+|..+|.|++|++ +|.+||+++.|+.|.||.+..+ ++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4578899999999999999999 9999999999999999999854 67889999
Q ss_pred cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC
Q 001190 914 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS 992 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~ 992 (1128)
|+..|..+.|+|...+|+|+|.|.+|++|+-..+. .........++. ..+.+++|++.|..|++++ |+.++||...
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999999999999999999999999999877321 233344455555 5899999999999988875 8999999865
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
+. + ...|+..+..+.|. ...|++++.|+.|++|.-..+-. .+.+.......+.|...|.+++|.|.
T Consensus 226 ~~-----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d-----~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 226 TD-----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD-----EPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred cC-----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC-----CchHHHHHhhhcccccccceEEEcCC
Confidence 21 2 22348899999998 44699999999999998764211 11111111112467778899999996
Q ss_pred CCCEEEEEECCCcEEEEcCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
-.++|++|++||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68899999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=277.61 Aligned_cols=284 Identities=17% Similarity=0.232 Sum_probs=241.0
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
...|..+.|.|+|++|++++..|.+.+|+... ++.+ ..+. +|..+|+++.||++|
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------fnFE------tilQ--aHDs~Vr~m~ws~~g 150 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------FNFE------TILQ--AHDSPVRTMKWSHNG 150 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------eeHH------HHhh--hhcccceeEEEccCC
Confidence 45788999999999999999999999997421 1111 1122 399999999999999
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
.++++|+ +|.|++|+..-. .+..+.+ |...|++++||| +...+++++.||+|+|||....+....+.||.-.|.++
T Consensus 151 ~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred CEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999998 899999998643 4444444 458999999999 67778899999999999999998888999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~ 1000 (1128)
+|+|...++||+|.|..|++||.++|+++.++..+. ..|..+.|.+++.+|++++ |..+++||+++.+.+..+
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK------ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK------NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhhhcc------ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 999999999999999999999999999876654442 7899999999999999976 999999999988887777
Q ss_pred ccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1001 TPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
++| ...|++++|+|- ..+|.+|+.||.|..|.+..-+.+..+. ++|...|-+++|+| -|.+|++
T Consensus 303 r~H---kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-----------~AHd~~iwsl~~hP-lGhil~t 367 (464)
T KOG0284|consen 303 RGH---KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-----------PAHDGEIWSLAYHP-LGHILAT 367 (464)
T ss_pred hcc---hhhheeeccccccccceeeccCCCceEEEeccccccccCCC-----------cccccceeeeeccc-cceeEee
Confidence 765 899999999994 4577789999999999998544444444 68888999999999 5999999
Q ss_pred EECCCcEEEEcCCCCC
Q 001190 1080 GLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~ 1095 (1128)
|+.|.++++|......
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999765443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=300.91 Aligned_cols=290 Identities=24% Similarity=0.411 Sum_probs=248.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+.+ |...|.+++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~~--h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELSG--HTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccccc--cccceeeeEECCC
Confidence 46789999999999999999999999999763211 0 11112233 9999999999999
Q ss_pred CCeEEEEe-CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT-GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
|+++++++ |++|++||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999998 899999999 66689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCC-CccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT-GDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++|++++.+|++++.|+.|+|||+.++... .......+... .+..+.|+|++++++++. |+.+++||+..+..+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 999999999999999999999999998843 22233333323 689999999999999986 7799999999999999
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC-ccceEEEEEecCCCCEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ-TVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l 1077 (1128)
.+..+..-...+.+..++++|+++++|+.|+.|++||+.++..+..+. .| ...+..+.|+| ..+++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~------------~h~~~~~~~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE------------GHSKAAVSDLSSHP-TENLI 437 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc------------CCCCCceeccccCC-CcCee
Confidence 998876311356666778899999999999999999999999888888 34 55668899999 58999
Q ss_pred EEEE--CCCcEEEEcCC
Q 001190 1078 AIGL--TDGSVKVMEPS 1092 (1128)
Q Consensus 1078 ~s~~--~dg~i~iWd~~ 1092 (1128)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9998 79999999754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.70 Aligned_cols=292 Identities=18% Similarity=0.287 Sum_probs=248.1
Q ss_pred CCcceEEeec-CCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcce
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1128)
+|....+++. |+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 3566667765 999999999999 565 999999999999999977 666653 89999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 410 ~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
..++|+++|..+++++.|+.|++||+++|+++..+ .....++++.|.||+.. .+++|+.|+.|+.|| .+|+.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f----~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF----HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEE----ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 99999999999999999999999999999987643 23457899999999955 788899999999999 9999999
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.+..|-+.|..+.|.+ +|.++++.++|+.+++|+.+..-... ....+.+...++...|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999966 77899999999999999987765443 33344557789999999999998874 88899
Q ss_pred EEeCCCC---ceeeEeccccCCc-eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCC
Q 001190 568 EWNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1128)
Q Consensus 568 ~wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~ 642 (1128)
++.+... .....|+||.-.. -..+.|||||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| ...
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPS 488 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcc
Confidence 9986543 3445677776533 3348999999999999999999999999999999998764 4789999999 567
Q ss_pred EEEEEEcCCcEEEEE
Q 001190 643 LLAVTTADNGFKILA 657 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~ 657 (1128)
.+|+++.+|.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 899999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-30 Score=279.57 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=250.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++... .+.+|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 77889899999999998876443 266788999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++|| .+++....+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 4668999999999999987 788888899999999 7788889999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99774 578888888999999999888888888888889999999999998888874 889999999999998888
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..+.. .+.++.|++++..+++++.||.|++|++.+++....+..+ ...+.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 7899999999888888888999999999998888887744 44799999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=271.71 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=243.9
Q ss_pred CCCcccEEEEEEec-CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|...|.++.|.| .+.+|++++.|+.|+||++- + .+.+++ .+.+ |..+|..++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lr-tf~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLR-TFKG--HRKPVRDASF 266 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceeh-hhhc--chhhhhhhhc
Confidence 45999999999999 88999999999999999853 3 334443 3444 9999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe
Q 001190 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 918 (1128)
+++|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++++..|-+.|
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999998 9999999999999999986 345689999999665999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCccc-
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER- 996 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~- 996 (1128)
..+.|-++|+++++.+.|++++||+...+-.++.+... ......++..+|++.++++- -|+.|.+|.+...-.
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-----~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-----EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-----hhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999999999999999999999886543332211 11456789999999999995 499999999764332
Q ss_pred --ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 997 --IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 997 --~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
-+.+.+|.. .+--..+.|||||++|++|+.||.+.+||.++-.++..+. .|...++.+.|+|...
T Consensus 421 nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk------------ah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 421 NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK------------AHDQPCIGVDWHPVEP 487 (503)
T ss_pred CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc------------cCCcceEEEEecCCCc
Confidence 234444443 4556788999999999999999999999999999988888 6666779999999988
Q ss_pred CEEEEEECCCcEEEEc
Q 001190 1075 NQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd 1090 (1128)
..+++|+.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 8999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=258.19 Aligned_cols=292 Identities=18% Similarity=0.272 Sum_probs=246.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.+-+..|+|||+++++++-||.|.+|++..++...+-+. .......+ +..+|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY---------QAqd~fMM--------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY---------QAQDNFMM--------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh---------hhhcceee--------cccceEEEeeccc
Confidence 456678999999999999999999999999876543222221 11111111 7889999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEee-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
...+|+|+ ||+|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.+++|--+.+|+++++++||+.-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 8999999999999 8888899999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CCEEEEEe-cCeEEEEecCCccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
..|++||.++++++.||+|++|+.++.++..++.... ...++..+..-|. -..++++. .++++|-++. |..++
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 9999999999999999999999999999887764432 2356777776664 34555554 7788888874 66777
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+....-..+...+.+.||.|.++++.++|+.++.|.+.+|.+...+. -|...+..++-+|+ .++++
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~------------VhEkdvIGl~HHPH-qNllA 495 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP------------VHEKDVIGLTHHPH-QNLLA 495 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee------------cccccccccccCcc-cchhh
Confidence 776554446777888899999999999999999999999999988887 45556788999995 89999
Q ss_pred EEECCCcEEEEc
Q 001190 1079 IGLTDGSVKVME 1090 (1128)
Q Consensus 1079 s~~~dg~i~iWd 1090 (1128)
+-+.||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=256.09 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=224.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....|.++.+. ...+++|..|++|++||... -.+. ..+.| |.+.|.|+.| |
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------~~c~-~~L~G--HtGSVLCLqy--d 246 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------LECL-KILTG--HTGSVLCLQY--D 246 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------HHHH-Hhhhc--CCCcEEeeec--c
Confidence 55678888875 44589999999999997542 1121 23444 9999999998 6
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce---eeecccccccCe
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE---VKSKLKGHQKRI 918 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~V 918 (1128)
.+.+++|+ |.+|+|||.++++++.++.+|...|..+.|+. .++++++.|.++.+||+.+.. +...+.||...|
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 77999998 89999999999999999999999999999964 589999999999999998653 456789999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI 997 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~ 997 (1128)
+.+.|+ .++++|++.|.+|++|++.+++.+.++.. |. ..+.++. -.|+++++|+ |.+|++||++.|.++
T Consensus 324 NvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g-----Hk-RGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG-----HK-RGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred eeeccc--cceEEEecCCceEEEEeccceeeehhhhc-----cc-ccceehh--ccCeEEEecCCCceEEEEeccccHHH
Confidence 999995 56999999999999999999887555433 32 3333333 3567777764 999999999999999
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
+.+++| ..-|.++.| |.+.+++|+.||.|+|||+.++..-......-.+.. .-.|.+.+..++| |...+
T Consensus 394 RvLeGH---EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~---lv~hsgRVFrLQF---D~fqI 462 (499)
T KOG0281|consen 394 RVLEGH---EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT---LVEHSGRVFRLQF---DEFQI 462 (499)
T ss_pred HHHhch---HHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh---hhhccceeEEEee---cceEE
Confidence 999887 789999999 688999999999999999998764322111100111 1256678899999 56899
Q ss_pred EEEECCCcEEEEcCCCCCC
Q 001190 1078 AIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~~~~~ 1096 (1128)
++++.|.+|-|||+.++-+
T Consensus 463 vsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EeccCCCeEEEEEcCCCCc
Confidence 9999999999999998753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=308.44 Aligned_cols=291 Identities=14% Similarity=0.181 Sum_probs=236.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
.|.+.|++++|+|+|+ ++|+|+.|+.|+|||......... . .......+ .+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCE
Confidence 4899999999999998 789999999999999764211000 0 00011112 2356899999987 5789
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887665 5779999999999997 677 899999999999999 788888888755 5789
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC----
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---- 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~---- 573 (1128)
++.|++ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 999854 367899999999999999998765 355677888899999997 7788888874 89999999974
Q ss_pred --CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-----------cCCCCCCcceEEEcCC
Q 001190 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp~ 640 (1128)
...+..+.+|.. .+.+++|++++.+|++|+.||.|++|+......+..+. ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 356788888876 78889999999999999999999999987664443221 1223346899999999
Q ss_pred CCEEEEEEcCCcEEEEEc
Q 001190 641 GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~ 658 (1128)
+..|++|+.+|.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=244.36 Aligned_cols=286 Identities=19% Similarity=0.265 Sum_probs=253.5
Q ss_pred EeecCCCcEEEEEEeC---CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 339 VSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fsp---dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
..-+|..+|-.++||| +|- +|++++.|+.-.+-+=++|.-+.+ +.||.+.|.+..+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence 3446999999999985 774 899999999999999889888754 89999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h 493 (1128)
.+....|+++.|-+-+|||.-+|..+.. | .|..-|.+++|+.|.. +|++|+.++.++|+| ....+...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 9999999999999999999999998773 3 6899999999999999 799999999999999 455677899999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+.|..+.|... .+.|++.+.|++||+||.+++.....+... .+|+++.++++|++|.++. .+.|..||..+
T Consensus 143 tg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 143 TGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred CCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 999999998764 367888899999999999999888877654 4699999999999988875 56799999999
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
..+++.+.... .|.+..++|+...+++|++|+.++.||..+++.+..+ ..++.++|.|+.|+|+|...++|+.||+|
T Consensus 215 f~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 215 FGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceE
Confidence 99999888765 4888899999999999999999999999999998885 34566799999999999999999999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|....+
T Consensus 292 rlWQt~~~ 299 (334)
T KOG0278|consen 292 RLWQTTPG 299 (334)
T ss_pred EEEEecCC
Confidence 99998765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=243.22 Aligned_cols=305 Identities=17% Similarity=0.249 Sum_probs=264.7
Q ss_pred CCCcccEEEEEEe---cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 761 TDTSSKVVRLLYT---NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 761 ~~~~~~i~~l~~s---~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
.+|+.+|..++|+ |+|-+|++++.||.-.+-+ -.+|.-+. .+.+ |.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~----------------------g~tgdwig-tfeg--hkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN----------------------GDTGDWIG-TFEG--HKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhcc----------------------CCCCCcEE-eeec--cCcceeee
Confidence 4599999999998 5899999999987655422 22333222 2444 99999999
Q ss_pred EeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccc
Q 001190 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915 (1128)
Q Consensus 838 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~ 915 (1128)
++..+....|+++ |=+-+|||.-+|..+..+. |..-|.+++|+. |.++|++|+.+.-++|||++.- ....++.+|+
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999988888887 8889999999999999886 888999999999 9999999999999999999864 4567899999
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
+.|..+.|....+.++|.+.|++||+||..++...+.+... ..++++.+++||+++.++..+.|.+||..+.+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 99999999998899999999999999999999988777666 78999999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.++.+.. ...|.+.+++|+...+++|++|+.++.||..+|+.+.... .+|.+.|.++.|+| |+.
T Consensus 217 ~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-----------kgh~gpVhcVrFSP-dGE 280 (334)
T KOG0278|consen 217 LLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-----------KGHFGPVHCVRFSP-DGE 280 (334)
T ss_pred ceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-----------cCCCCceEEEEECC-CCc
Confidence 9998887 6789999999999999999999999999999999888753 26788899999999 799
Q ss_pred EEEEEECCCcEEEEcCCCCC--CCcccCCCCCCCccCCCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSESE--GKWGVSPPVDNGILNSRTTS 1115 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~~--~~w~~~~p~~~~~~~~~~~~ 1115 (1128)
..++||.||+|++|...-++ +.|+-.-|.+.+...+++.-
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~~e 322 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASPKE 322 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhccccChhhhccccccccc
Confidence 99999999999999877553 35888888888877776653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=223.85 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=242.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
....+.++.....|.+|+|+|.|. +.|+|+...+.+|-.+..-..++... +.....+...-..-+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence 345677788899999999999999 77999999999998654322111000 0000000111123567999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc--ceeceeecccccceeEEEEecC---CCeEEEEEec-CCCeEEEEe-cCCCe
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRK 486 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~fs~d---~~~~~l~s~s-~d~~i~vWd-~~g~~ 486 (1128)
|||+|.+||+|+.|++|++.-.+...+ ...-..+.-|.+.|..++|..+ +.. +|++++ .|..|.+-| ..|..
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999986654332 2233357789999999999754 333 566654 477899999 99999
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeec
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
.+.+.||.+.|.++. +-++..+++|+.|.+|++||++...+..++... ...|.++++.|.|++|+++..
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999999874 226689999999999999999988777665432 247999999999999999874
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe--eeEEEecCCCCCCcceEEE
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~ 637 (1128)
|....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+...- .+..+....+...+..+.|
T Consensus 252 ---dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 88899999999999999999987 89999999999999999999999999986531 1112222234446788899
Q ss_pred cCCCCEEEEEEcCCcEEEEEcc
Q 001190 638 SKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|..-.+++.+.|.++.+|-++
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9998889999999999999753
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=239.12 Aligned_cols=310 Identities=15% Similarity=0.226 Sum_probs=242.4
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccccc-ccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWD-MAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
+....-.|++++.+.+|||||. ++|+|+.|-.|+|.|++..-- +..+.++.. ......+. .+.+-.|...|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPv-IRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPV-IRTLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCce-EeehhhccCcccceee
Confidence 3445556999999999999999 899999999999999872100 001111110 00011121 2358889999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe---
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--- 490 (1128)
+|....|++|+.|++|+++|+......+.+..+ ....+|.++.|+|.|. +|+.|.+-.++++|| .+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999765443333333 3567899999999999 889999999999999 666554333
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-C-CCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+|.+.|+++.+++ .+++.++++.||.|++||--+.+++.++.. | +..|.+..|..+|+++++.+. |..+++
T Consensus 258 ~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 46899999999866 668999999999999999888887766543 3 348999999999999999984 999999
Q ss_pred EeCCCCceeeEeccccC----CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 569 WNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
|.+.+++.+.++.|... ..-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-||.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence 99999999999987521 1122345777777777755 467899999999887776654 67778999999999999
Q ss_pred EEEEEcCCcEEEEEc
Q 001190 644 LAVTTADNGFKILAN 658 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (1128)
+++++.|..+++|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 999999999999964
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=256.22 Aligned_cols=283 Identities=20% Similarity=0.284 Sum_probs=239.5
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
..+.|.+++|||...+=+|+. ..-.+.||+..+...... +..-...|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 446799999999766545554 345799999887665532 333566899999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 57899999999999998876 899999999999999 55555568999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1128)
|+|. ++..++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 9976 457999999999999999998865555566889999999999999999996 6689999999654 55555
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..|.. .|+|+++..++..|++++-|+.|++||..+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+..
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehhh
Confidence 55666 89999999999999999999999999999999999987654 69999999999999999999998776433
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=266.35 Aligned_cols=246 Identities=24% Similarity=0.396 Sum_probs=217.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999877544 4678999999999999998 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++.+..+..|...+.++.|++. +.++++++.||.|++||+.+.+....+..+...+.++.|+|++.+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 154 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--- 154 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---
Confidence 777888889999999999999774 57888888899999999998777777877888999999999988888875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.++.|++||+.+++.+..+..+.. .+.++.|+++++.+++++.||.|++||+.+++.+..+..+ ...+.++.|+|+
T Consensus 155 -~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 155 -QDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred -CCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 388999999999999888887765 7999999999999999999999999999998888777543 337899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccC
Q 001190 641 GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++++++.+|.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=256.69 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=252.4
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcc
Q 001190 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
.+.+|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-. ...+.|..++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence 3456677777777 999999999999965 57999999999999998776321 1248888999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|+.+.|.++++++++++.|+.+++|+++..+... +|.||++.|+++.|..... .+++|+.|.+|+.|| ..+.+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999976555 6899999999999998877 599999999999999 777777
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.++.. ...+..++.. ...+++|..|+.||+||.+..........++ .|+++..+++|..+++++. |..+.
T Consensus 297 kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~ 366 (459)
T KOG0288|consen 297 KTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK 366 (459)
T ss_pred ccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence 66542 3345555543 3578999999999999999999888888776 8999999999999999974 88999
Q ss_pred EEeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 568 EWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
+.|+++.+..+.+..... ...+.+.|+|++.|+++||.||.|+||++.++++...+...+....|++++|+|.|..+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 999999998888765321 23677999999999999999999999999999999998877665579999999999999
Q ss_pred EEEEcCCcEEEE
Q 001190 645 AVTTADNGFKIL 656 (1128)
Q Consensus 645 ~~~~~dg~i~iw 656 (1128)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999998
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=229.79 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=218.8
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...+..|.++|..+.|+-||+|.++|+.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34588999999999999999999999999999999999998887 6889999999999999998 799999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+|| .+|+.++++.+|.+.|+.+.|+. +...+++|+.|..+++||-+... .+..+......|.++.++ +..|++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999954 66899999999999999987654 444555566678888765 456777
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
++. ||+++.||++.|++...+.++ +|++++|+++++..++++.|+++++.|.++|+++....+|....--...
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 774 999999999999987777765 7999999999999999999999999999999999999877665444567
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++.....+++|+.||.|.+||+...
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=299.19 Aligned_cols=324 Identities=12% Similarity=0.147 Sum_probs=241.5
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceecc
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1128)
|-+++|+.......... .......|.+.|.+++|+|+|.++++++.|+.|++|++..... .+...
T Consensus 458 gl~~~~~~~~~~~~~~~---~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~---------- 522 (793)
T PLN00181 458 GLCKYLSFSKLRVKADL---KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDI---------- 522 (793)
T ss_pred hhhhhhcccceEEEEee---ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccccc----------
Confidence 55666765532221111 1111234889999999999999999999999999998653110 00000
Q ss_pred CCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 816 SSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
. ... ..+ .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus 523 ~--~~~-~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 523 H--YPV-VEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred c--cce-EEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 0 000 001 1346788999987 478899888 9999999999999999999999999999999757899999999
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEc-CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
||+|++||+.++..+..+..| ..|.++.|+ ++|.+|++|+.|+.|++||+.+++.. .....+|. ..+..+.|.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~----~~~~~~h~-~~V~~v~f~ 670 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP----LCTMIGHS-KTVSYVRFV 670 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc----ceEecCCC-CCEEEEEEe
Confidence 999999999999888888755 679999995 57999999999999999999875421 11122333 678999997
Q ss_pred CCCCEEEEE-ecCeEEEEecCCc------ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 973 ADQVRMLVV-HETQLAIYDASKM------ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 973 ~d~~~l~~~-~d~~i~v~d~~~~------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
++.+++++ .|+.|++||+..+ ..+..+.. |...+.+++|++++++|++|+.||.|++|+......+...
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 66677765 5999999999753 34444444 4788999999999999999999999999998877655433
Q ss_pred CCCCCCC-CcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1046 APSTYLS-PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1046 ~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
....... .......+...+.+++|+| ++..|++|+.||.|+||++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 2111110 0001124456789999999 6899999999999999986
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=243.95 Aligned_cols=290 Identities=19% Similarity=0.318 Sum_probs=241.8
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
-.+......+-|.++|.++... ++ .+.+|+.||.++|||.. |+... .+.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceee
Confidence 3456667778899999999999 45 67899999999999975 55543 38899999998
Q ss_pred EEEccCC---CEEEEEeCCCeEEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC---
Q 001190 412 VAWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--- 483 (1128)
Q Consensus 412 l~~spdg---~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~--- 483 (1128)
++|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|+||+ ..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 369999999999999998876432 2223459999999999999999 899999999999998 21
Q ss_pred ----------------------CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeE
Q 001190 484 ----------------------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1128)
Q Consensus 484 ----------------------g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 541 (1128)
+.++..+.||.++|.++.|.. ...+++++.|.+|+.||+.+++....+.. ....
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 124567899999999999975 35899999999999999999988877664 4468
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc---eeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
.++.++|..++|++++. +..+++||.+++. ..+.|.+|.+ -|..+.|+|... .|++|+.|+++++||+++-
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999985 8899999998764 5678899998 899999999764 5777999999999999987
Q ss_pred e-eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 618 N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 618 ~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
. ++..+..| ...|.++.|+. +..+++|+.|.+|+|+..
T Consensus 379 k~plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccC--CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 88888765 44899999974 568999999999999864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=278.96 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=250.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
+...|.+++.+|||. .+|||+ .|+.++||+.+.=-. ..+.++.. .+.....+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456699999999999 679999 899999999653110 01111111 22233457789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
||+|++|+.|.||+... | +..+....+.+|...|.+++|+|++. +||+++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234457889999999999999999 899999999999999 889
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC------CeEEEEEEcCCCCeEEEeee
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+....+....+..+- .....+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999966 67999999999999999977655655554432 25788999999999999887
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-----CC------------EEEEEECCCcEEEEECCCCeeeE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
...+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 667788999999988898999999998 8999999872 11 56778999999999998877766
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
....-. ...|..++|+|||..|.+++.||+|.++.+...
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543322 237999999999999999999999999988764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=225.32 Aligned_cols=287 Identities=12% Similarity=0.141 Sum_probs=238.0
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+..-+|+.+++.+.|+.+|. ||.+++.|.++.+|--.+|+.+.+ +.||++.|.|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 34456999999999999999 889999999999999889998865 8999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC-----CCeEEEEe-c-------CC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE-L-------SG 484 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~i~vWd-~-------~g 484 (1128)
.+++++|+.|.++++||+++|+++... ....+|..+.|+.+|.. ++.+.+ .+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 35678999999999993 443332 36789999 4 34
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.+...+..+...++.+.|.+. +++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 567888889999999999774 5799999999999999999875554 44678889999999999999999984 8
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--cEEEEECCCCe------------eeEEEecCCCC
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVN------------ILTSTDAEGGL 629 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~------------~~~~~~~~~~~ 629 (1128)
.+-++||..+.+.++++.... ++++.+++|-..+++.|+... .|.-=+.+.|+ .+... .+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv--kGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV--KGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc--cccc
Confidence 899999999999999998764 799999999888888876322 22222222232 22233 3667
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
++|++++|+|+|+..++|+.||.|++.-...
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7999999999999999999999999986654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=266.78 Aligned_cols=294 Identities=17% Similarity=0.274 Sum_probs=253.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
.|+....+......-.+...|.|..|+ +| .+++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 455544444444444578889999999 54 478999999999999999887642 288999
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
+.|.+++|..-+.+|++|+.|.+++|||..+|++.. ++.+|...|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998888999999999999999999999887 58899999999988644 689999999999999 8899
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.+..+.+|.++|.++.++ +.++++|+.|++|++||+.++++...+.+|...|.++.+.+. ..+++++. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 569999999999999999999999999999999999988766 78888886 899
Q ss_pred EEEEeCCCC-ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 566 i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
|++||++++ +++.++.+|.. .+..+.+ .+++|++++.|+.|++||.++++++..+... +...|.++++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999987 5544443 4689999999999999999999999999874 33467777765 4688
Q ss_pred EEEEcCCcEEEEEcccCcc
Q 001190 645 AVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~ 663 (1128)
++++.+|.+.+||+.++..
T Consensus 468 l~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEEecCCeeEEEecccCch
Confidence 9999999999999999843
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=219.84 Aligned_cols=233 Identities=14% Similarity=0.228 Sum_probs=201.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||++.|++++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998776 6889999999999999999 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-----cCcEEEEecC-------CCCceeeecCCCCeEEEEEEc
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~i~~~~~s 547 (1128)
| .+|+++..+. ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+.|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999887 466899999977 4455555543 3678999987 344566777788899999999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
|-++.|++|. .++.|..||+++|+. +..-+.|.. .|+.++++++..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Gh----e~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGH----EDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEec----CCCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999997 599999999999854 455566665 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEcCCCCEEEEEEc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
.+|++.+++|-...++.|+.
T Consensus 232 ---~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ---ccccceecccccceEEecCC
Confidence 37999999998777777654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=270.28 Aligned_cols=305 Identities=16% Similarity=0.246 Sum_probs=243.7
Q ss_pred CcccEEEEEEecCcceEEEee--ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+...|.++..+|||..+++++ .||.+++|+.+.--. +...++..-...+. .+. .|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m~--~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TMD--DHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-eec--cccCceeEEEEC
Confidence 345589999999999999999 799999998653110 11122222111111 112 389999999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCC------------------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 841 KNDSYVMSAT-GGKISLFNMMT------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
+||++||+|+ |..|.||+... .+.+..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 56689998762 246778899999999999999 999999999999999999
Q ss_pred cccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 902 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
..+.++++++++|.+.|.++.|.|-|+||||-+.|++|+||++.+....+.+.-..........+..+.|||||.+|++.
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 99999999999999999999999999999999999999999988766555554443333333678899999999999984
Q ss_pred e-----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeC-----CC------------EEEEEecCCcEEEEecCCC
Q 001190 982 H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN-----SQ------------LVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 982 ~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~t~~~dg~i~vwd~~~~ 1039 (1128)
. ...+.|.+-.+-+.-..+.+| ..++.++.|+|. .+ .+|+|+.|++|.||.....
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2 456888887776666666665 789999999981 11 5678999999999999888
Q ss_pred ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1040 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+.+..+.. --...|+.++|+| ||..|+++|.||+|.+..+++.|.
T Consensus 315 RPl~vi~~-----------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 315 RPLFVIHN-----------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred Cchhhhhh-----------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 77666551 2223569999999 799999999999999999987754
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=225.69 Aligned_cols=274 Identities=17% Similarity=0.254 Sum_probs=222.1
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC-ceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.-++.|.+++|||....++++||-|++|++|+++.. ...- +....|.++|.+++|+.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 356789999999966668889999999999999873 3321 236679999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+++|+.|+.+++||+.+++... +..|.++|..+.|.+...+..|+|||.|++|+.|| ....++.++.- .+++++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence 9999999999999999996443 67899999999999876655899999999999999 77778877763 456777
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-C-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC--c
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-A-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--T 575 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~ 575 (1128)
+.+-. ..++++..++.|.+|+++....+.... . -.-.++|++.-+|.+..+.|+. +|.+.+..+..+ +
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPK 233 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCcc
Confidence 76532 478999999999999997655443221 1 2336889998888887788875 888888888776 5
Q ss_pred eeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
.-.+|+.|.. ..|..++|+|.-..|+++|.||++.+||.+....+...+.+. .+|.+..|+.+|.+++.+
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEE
Confidence 5567777763 236778999999999999999999999998877777766544 489999999999998876
Q ss_pred E
Q 001190 648 T 648 (1128)
Q Consensus 648 ~ 648 (1128)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 4
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=236.12 Aligned_cols=662 Identities=14% Similarity=0.169 Sum_probs=358.1
Q ss_pred eeccCCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcce---eceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.++.+|...|+.+.||| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++.|+|.... +++++. .|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~a-~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASGA-HG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEecc-Cc
Confidence 45889999999999999 67799999999999999998542211 11123334557889999997664 455554 79
Q ss_pred eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-eeecCCCC-eEEEEEEcCCCCe
Q 001190 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGH-WCTTMLYSADGSR 552 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~-~i~~~~~s~~g~~ 552 (1128)
+++||| .+++.+..+.+|.+.|.++.|+. ||.+|++.+.|..|+|||.+..... .....|++ .-..+.|..+-.+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 999999 99999999999999999999954 8899999999999999998875443 34455544 3445677766668
Q ss_pred EEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEE--EecCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTS--TDAEGG 628 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~--~~~~~~ 628 (1128)
|++.+.+......|++||.+. +..+.++.......+..--|.||.+.++.++ .+.+++.+.+...++... +.....
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle 308 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE 308 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch
Confidence 888776655677899999876 3455555554443455567889988777765 677888888766543211 111000
Q ss_pred CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc----------cccccccC----------------CccccccCccee
Q 001190 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL----------RSLRAVEN----------------PPFEALRTPIES 682 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~----------------~~~~~~~~~i~~ 682 (1128)
......++-|...+-+..+. ..+++.+.... +..+.+.. .-..+....+..
T Consensus 309 -~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqK 385 (1012)
T KOG1445|consen 309 -EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQK 385 (1012)
T ss_pred -hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccc
Confidence 01122222232111111111 11111111110 00000000 000011111222
Q ss_pred eeeecccccccccCCCCcceec---ccCCCCCcccccC-CCC----------CCCCCC-CCcccCCCCCCCCcceeE---
Q 001190 683 VALKVSASSAVSSGTPANCKVE---RSSPVRPSPIING-VDP----------TSRSMD-KPRTVDDVTDKPKPWQLA--- 744 (1128)
Q Consensus 683 ~~~s~~g~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~----------~~~~~~-~~l~~~~~d~~i~vw~~~--- 744 (1128)
+.+.|..+.- ..+....+. .........++.. ... ...|+- ..-++. ....++-.+..
T Consensus 386 vSl~Pa~r~h---~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 386 VSLAPAQRSH---SPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELDYRPYE 461 (1012)
T ss_pred cccCchhccC---CCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhcccccc
Confidence 2222221110 000000000 0000000000000 000 000110 000000 00001100000
Q ss_pred --EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEee----cc--ceeEee------eccccCCCCCCceee----
Q 001190 745 --EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG----SN--GVQKLW------KWHRNEQNPSGKATA---- 806 (1128)
Q Consensus 745 --~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~lw------~~~~~~~~~~~~~~~---- 806 (1128)
.+...... ......+.++.+..+. |....++--. .+ .+..+. .+.....+..|....
T Consensus 462 ~~~g~~~~~~---dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~ 536 (1012)
T KOG1445|consen 462 KENGVHTPNA---DADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNR 536 (1012)
T ss_pred cccCccCCCc---ccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccc
Confidence 00000000 0000001111111110 0000000000 00 000000 000000000000000
Q ss_pred -------------eeccceeccCCCcccc-----ccccCCCCCCCeeEEEeccCCCeEEEE---eCCeEEEEECCCc-eE
Q 001190 807 -------------SAVPQHWLPSSGLLMA-----NDVAGVNLEEAVPCIALSKNDSYVMSA---TGGKISLFNMMTF-KV 864 (1128)
Q Consensus 807 -------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~~---~dg~i~vwd~~~~-~~ 864 (1128)
...+.-+.-..|.... ..+.+.+..-+-.+=-|..+.+++|+- +.|.|.||++..- ++
T Consensus 537 v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrL 616 (1012)
T KOG1445|consen 537 VPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRL 616 (1012)
T ss_pred ccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCC
Confidence 0000001111111100 011111111111222344456666653 4789999998642 22
Q ss_pred E-EEeeC--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-------eeeecccccccCeeEEEEcCC-CCEEEEE
Q 001190 865 M-TTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-------EVKSKLKGHQKRITGLAFSTS-LNILVSS 933 (1128)
Q Consensus 865 ~-~~~~~--~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~ 933 (1128)
- ..+.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|+++.|+|- ...|+++
T Consensus 617 PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a 696 (1012)
T KOG1445|consen 617 PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA 696 (1012)
T ss_pred CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh
Confidence 1 11111 34469999999999999999999999999999865 334668899999999999995 4589999
Q ss_pred cCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCccc-ccccccCCCCCCCeE
Q 001190 934 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-IRQWTPQDALSAPIS 1011 (1128)
Q Consensus 934 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~ 1011 (1128)
+.|.+|++||+.+++....+. +|. ..|..++|||||+.+++ +.||+++||.-++++. +..-.+.. ...--
T Consensus 697 syd~Ti~lWDl~~~~~~~~l~-----gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv--gtRgA 768 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYSRLV-----GHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV--GTRGA 768 (1012)
T ss_pred hccceeeeeehhhhhhhheec-----cCc-CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--cCcce
Confidence 999999999999977544433 333 88999999999999998 5699999999987765 33322222 44556
Q ss_pred EEEEeeCCCEEEEEecCC----cEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc
Q 001190 1012 CAVYSCNSQLVFATFCDG----NIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS 1085 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg----~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~ 1085 (1128)
.+.|.-||+++++.+.|. .|.+||.++... +.+.... -+- .++--.|.++.+-+|++|-.|..
T Consensus 769 Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vap--s~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAP--SPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred eEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccC--ccccccccCCCceEEEecCCCce
Confidence 788999999999877554 689999887542 2222100 011 11222345555678899999999
Q ss_pred EEEEcCCCCCC
Q 001190 1086 VKVMEPSESEG 1096 (1128)
Q Consensus 1086 i~iWd~~~~~~ 1096 (1128)
|.+|++...++
T Consensus 838 v~~yEv~~esP 848 (1012)
T KOG1445|consen 838 VNMYEVIYESP 848 (1012)
T ss_pred EEEEEecCCCc
Confidence 99999877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=259.08 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=222.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1128)
|-..|....+++|+..+ ++++.+..+..|+...+..+. +.............+.||.+.|.+++|+| ++.+|
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 44567788888897644 666677888889876554321 11111111112235889999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 422 GVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
|+|+.|++|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 99999999999999875321 223368899999999999998643 799999999999999 888889999999999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCe-EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999977 6789999999999999999998887777777653 45678899988888877555568999999998754
Q ss_pred -eeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 576 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 34444444443566678899999999988 5999999999999887765443 3346788888885
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-26 Score=222.25 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=231.8
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.|.++.|+++|..+++++.|..+++||... |..... +.. ++..+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence 567899999999999999999999999997543 222221 111 5567888899887
Q ss_pred CCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
...++.++ |.+|+..++.+.+.++.|.||...|+.++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77766665 67899999999999999999999999999999 6788999999999999999988777666543333
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
.++|.|.|-++|.+.....|++||++............... .....+.+.|||||++++.+. .+.+++.|.-+|..+.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 58899999999999888899999998764433333333322 227889999999999999876 7789999999999888
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+..+.....--...+|+||++++++|+.||+|.||++++|..+..+.+. +...+.++.|+| .+.+
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-----------~~~~~~~~~fnP---~~~m 289 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-----------NGGPVSCVRFNP---RYAM 289 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-----------CCCCccccccCC---ceee
Confidence 87776542333367889999999999999999999999999999999832 344557788988 3555
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
.++.+..+.+|=+...+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55667799999887665
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=262.79 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=215.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc---CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg 418 (1128)
.|.+.|||+.||+||+ |||+|+.|+.|+||.+...+.... .. ......+.. + .-.+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~---~~~~~~~~~--~-~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AE---GDSSCMYFE--Y-NANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cc---cccchhhhh--h-hhccccCccccccccccc
Confidence 5999999999999999 789999999999999976433210 00 000000000 0 0000011111111 01
Q ss_pred C--EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 419 ~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|++.|+||++|+ ....++..|. |.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111112334688999999999999887 699999999999999 7788888887 999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
-|+|++|+|.. .+++++|+-||.||||++...+...-.. -..-|++++|+|||+..++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 99999999985 5899999999999999996654444333 3467999999999999999996 8999999999887
Q ss_pred eeeEecccc-------CCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFR-------KKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
++..+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+.+......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766554221 2258889888644 46888999999999999999998888866555555678899999999999
Q ss_pred EcCCcEEEEEcccC
Q 001190 648 TADNGFKILANAIG 661 (1128)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (1128)
+.|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=217.85 Aligned_cols=274 Identities=15% Similarity=0.216 Sum_probs=234.3
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
+|...|.+|+|+-+|+ .||+|+.|+++.+|+++..+.... -...+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 5888999999999999 679999999999999988754432 23778999999999998 5678
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+|+++.|.+|++||+..+++.... . ..+.=.-+.|+|+|. +++.++.|..|.+.| .+.+.....+ ..-.+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 999999999999999999987743 2 233344688999999 799999999999999 6555554443 3445777
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++|+. ++.+++.....|.|.|-.+...+....+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.
T Consensus 153 ~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 88874 3356666666799999999988999999999999999999999999999995 89999999999999999
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
+..+.- +|..+.|+.+|++|+++|+|..|-|=+.++|..+..++..+ +...|+|+|...+||.+.+|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 988775 89999999999999999999999999999999999997655 56899999999999988775
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=227.85 Aligned_cols=293 Identities=16% Similarity=0.237 Sum_probs=233.6
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccC------------CCc---ceeceeecccccceeEEEEecCCC
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SND---LRQHSQIDAHVGAVNDLAFAYPNK 464 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~------------~~~---~~~~~~~~~h~~~v~~l~fs~d~~ 464 (1128)
..+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |.. -..+.+|-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34778999999999999999999999999999999871 111 123447789999999999999999
Q ss_pred eEEEEEecCCCeEEEEe-cCCCe--EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCC
Q 001190 465 LLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPG 538 (1128)
Q Consensus 465 ~~~l~s~s~d~~i~vWd-~~g~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~ 538 (1128)
.|++|+.|++|+++| ..... ..+......+|.++.|+| .|.+|+.|....++++||+++.++-..- ..|.
T Consensus 186 --ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 --ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred --eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 899999999999999 32222 222223456899999998 4579999999999999999988776643 3456
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc-ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
..|+++.+++.|++.++++ .||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaS----kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTAS----KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cceeEEEecCCccEEEEec----cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6899999999999999998 499999999999999998875 45556888999999999999999999999999999
Q ss_pred eeeEEEecCCCCCC---cceEEEcCCCCEEEEEEc-CCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 618 NILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
+.+....+.+..+. -+...|+....+++.-.. .+.+.-||.++..
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad------------------------------- 386 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD------------------------------- 386 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh-------------------------------
Confidence 99998876543222 134456665555554432 4567777766541
Q ss_pred ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
.+.+|. .+|.+.++.+.-+
T Consensus 387 -------------------------------------------r~~l~s------------------lgHn~a~R~i~HS 405 (430)
T KOG0640|consen 387 -------------------------------------------RVALLS------------------LGHNGAVRWIVHS 405 (430)
T ss_pred -------------------------------------------hhhhcc------------------cCCCCCceEEEeC
Confidence 122232 2399999999999
Q ss_pred cCcceEEEeeccceeEeee
Q 001190 774 NSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~ 792 (1128)
|.+..+++++.|-.+++|-
T Consensus 406 P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCceeeecccceeeeee
Confidence 9999999999999999994
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=240.89 Aligned_cols=296 Identities=17% Similarity=0.246 Sum_probs=229.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|+..|.++++.|.|.++++|+-|..|++||+.....+... .....+. ....|+++.||+.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------fr~l~P~--E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------FRQLQPC--ETHQINSLQYSVT 225 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------hhccCcc--cccccceeeecCC
Confidence 8889999999999999999999999999999865431110 0011111 4667999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEe------------eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-e
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-K 908 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~------------~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~ 908 (1128)
|..|++.+ ....+|+|-...+..... ++|...++|.+|+|.....+.+++.||+++|||+...+. +
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 98887776 677999998765554332 478889999999998788899999999999999986432 2
Q ss_pred ecc-----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC-CCCccEEEEcCCCCEEEE-E
Q 001190 909 SKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLV-V 981 (1128)
Q Consensus 909 ~~l-----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~-~ 981 (1128)
..+ .+..-+++.++|++||+++|.|+.||.|.+|+..+........ ....|. ...+++|.||+||++|++ +
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~--vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK--VKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE--eeeccCCCCceeEEEeccccchhhhcc
Confidence 222 2334578999999999999999999999999985543333332 233333 258999999999999999 6
Q ss_pred ecCeEEEEecCCccc-ccccccCCCCCCCeEEEEEeeCCCEEEEEe------cCCcEEEEecCCCceEEEeCCCCCCCCc
Q 001190 982 HETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQLVFATF------CDGNIGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 982 ~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
.|+.+++||++..+. +..+..... ..+-+.++||||.++|++|. ..|.+++||..+.+.+.++.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-------- 454 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-------- 454 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--------
Confidence 799999999997654 444444332 66778999999999999986 36789999999999999998
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEE-cCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM-EPSES 1094 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW-d~~~~ 1094 (1128)
-....|..+.|+| .-+.|++|+.||+++++ |....
T Consensus 455 ----i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 455 ----ISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred ----CCCceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 2345678899999 58889999999998765 55443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=230.03 Aligned_cols=283 Identities=19% Similarity=0.315 Sum_probs=234.0
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCC
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.|.+.|.++.-. ++ .++||+.||++++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588899999887 55 7999999999999999999999999999999988875432 234699999999999998877
Q ss_pred CCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-------------------------CCceee
Q 001190 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1128)
Q Consensus 528 ~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~~ 578 (1128)
+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65543 34488889999999999999999996 9999999932 134566
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7888987 899999987 6789999999999999999999988886543 5899999999999999999999999997
Q ss_pred ccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCC
Q 001190 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1128)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1128)
+++.. +
T Consensus 330 R~~~g--------------------------s------------------------------------------------ 335 (423)
T KOG0313|consen 330 RTGDG--------------------------S------------------------------------------------ 335 (423)
T ss_pred CCCCC--------------------------c------------------------------------------------
Confidence 66410 0
Q ss_pred CcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCC
Q 001190 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1128)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1128)
+...
T Consensus 336 ----------------------------~v~~------------------------------------------------ 339 (423)
T KOG0313|consen 336 ----------------------------VVSQ------------------------------------------------ 339 (423)
T ss_pred ----------------------------eeEE------------------------------------------------
Confidence 0000
Q ss_pred ccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCce-EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.+. +|...|.++.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|. ++.++++|+.|.
T Consensus 340 -----s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN 410 (423)
T ss_pred -----eee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence 011 1777788888888654 456666 9999999999887 889999999999999998 577999999999
Q ss_pred cEEEEecc
Q 001190 896 TIHIYNVR 903 (1128)
Q Consensus 896 ~v~iwd~~ 903 (1128)
+|+|+...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=248.64 Aligned_cols=295 Identities=18% Similarity=0.312 Sum_probs=244.2
Q ss_pred CCCCccccccCCCCCCC--CCCcccCCCChHHHhhhcCCCCCCCcccccCCCcc--cccCCCCCcceEEeecCCCcEEEE
Q 001190 275 VPQNQVSVLKHPRTPPT--PGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ--TWSLDDLPRTVAVSLHQGSTVISM 350 (1128)
Q Consensus 275 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~v 350 (1128)
.+.....||+.|.-..+ ...+||... .+...+-+.. +|+....+......++ ++.|+++
T Consensus 161 ~~~~p~rvLDaP~l~dDfY~nlldWss~----------------n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv 223 (484)
T KOG0305|consen 161 IPQTPYRVLDAPGLQDDFYLNLLDWSSA----------------NVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSV 223 (484)
T ss_pred ccCChhhhccCCcccccHhhhHhhcccC----------------CeEEEEecceEEEEecCCCceEEeEecC-CCceEEE
Confidence 44555567776664333 666777622 2333333333 8887776655555555 8999999
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC-CCcceEEEEEccCCCEEEEEeCCCe
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+ |...|.+++|+ +..+.+|+.|+.
T Consensus 224 ~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW~--~~~lssGsr~~~ 281 (484)
T KOG0305|consen 224 KWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAWN--SSVLSSGSRDGK 281 (484)
T ss_pred EECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEecc--CceEEEecCCCc
Confidence 9999999 789999999999999988776653 556 99999999998 778999999999
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~ 508 (1128)
|..+|+...+..-. ++.+|...|..+.|++|+. ++++|+.|+.+.||| ....++..+..|.+.|.+++|+|-..
T Consensus 282 I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~- 356 (484)
T KOG0305|consen 282 ILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS- 356 (484)
T ss_pred EEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-
Confidence 99999998876544 4789999999999999999 899999999999999 78888999999999999999999765
Q ss_pred cEEEEEe--ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC
Q 001190 509 QFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (1128)
Q Consensus 509 ~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 586 (1128)
.+||+|+ .|+.|++||..++....... .+..|.++.|++..+-|+++.. ..+..|.||+..+.+.+..+.+|..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~s~n~i~lw~~ps~~~~~~l~gH~~- 432 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--YSENQITLWKYPSMKLVAELLGHTS- 432 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--CCCCcEEEEeccccceeeeecCCcc-
Confidence 5888874 79999999998766555444 4567999999999987776653 2466899999999999999999998
Q ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 587 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
.|..++++|||..+++|+.|.++++|++-+.
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 7999999999999999999999999998765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=221.08 Aligned_cols=240 Identities=20% Similarity=0.260 Sum_probs=211.6
Q ss_pred CCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCC--EEEEEeCCCcEEEEecccc
Q 001190 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~ 905 (1128)
.|...++++|. +|.++|+|+ |.+|+|||+...+.+..+-.|.+.|+++.|.+ +.. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 49999999998 789999998 89999999999999999999999999999998 554 7899999999999999999
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCe
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 985 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~ 985 (1128)
+++..+++|.+.|+.++++|.|++-++.+.|+.+++||+-.|+.-....+. ...+.|.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998865555554 4455699999999999999999
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceE
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1065 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1128)
|-+|.+.+......+.. ...+.++.|- ++.+|++|++|+.|.+||..++...+.+. +|..+|.
T Consensus 191 i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~------------AH~~RVK 253 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL------------AHENRVK 253 (362)
T ss_pred EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee------------cchhhee
Confidence 99999999888777765 4567777775 56789999999999999999988888887 6777788
Q ss_pred EEE-EecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1066 VVA-AHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1066 ~~~-~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++. |...++.+|+++|.||.|++||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 887 333357899999999999999998764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=239.22 Aligned_cols=286 Identities=14% Similarity=0.253 Sum_probs=235.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.|.+++|+|...+=++....-.+.+|+.. +..... .+.. ....+.+++|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~----------------------~~~~~k-~~sr--Fk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV----------------------TRSVRK-TFSR--FKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecc----------------------hhhhhh-hHHh--hccceeEEEeecC
Confidence 56789999999977655555555566666532 222111 1111 6788999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
|+++|.|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999998 79999999887777889999999999999999999999999999999999999998877899999999999
Q ss_pred EEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccccc
Q 001190 922 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 1000 (1128)
+|+|-. .+++|||.||.|++||+.... ... .. . ..+.+|..+.|-|.|..+++++...++|||+.+|......
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v--~e-l--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT-SRV--VE-L--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC-cee--EE-e--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 999964 489999999999999998753 111 11 1 1227899999999999999999999999999977765544
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~ 1080 (1128)
... |...|+|+.+..|+..|++|+-|+.|+|||+.+.+.+..+. -++.+++++.+| ++..++.|
T Consensus 234 ~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 234 MFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred hhc--ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-------------cccceeeEEecC-CCceEEEe
Confidence 432 48999999999999999999999999999999988888877 224568999999 68899999
Q ss_pred ECCCcEEEEcCCCCC
Q 001190 1081 LTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1081 ~~dg~i~iWd~~~~~ 1095 (1128)
..||.+-+=+....+
T Consensus 298 msnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKK 312 (487)
T ss_pred cccceeeeehhhccc
Confidence 999999887666655
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=218.70 Aligned_cols=283 Identities=17% Similarity=0.246 Sum_probs=226.0
Q ss_pred EEEEEeCC--CCcEEEEee-----ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CC
Q 001190 348 ISMDFHPS--HQTLLLVGS-----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1128)
Q Consensus 348 ~~v~fspd--g~~lla~gs-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 419 (1128)
.++.|||- ++..+|++. ..|.+.|-++..++.+.. ++ --.-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57889994 553344442 257899999875544421 11 1124568999999995 55
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
.+++++.||++++||.. ..-.++..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 77888999999999954 333455578899999999999997666 677779999999999 88899999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE-EeeeccCCCceEEEEeCCCC-ce
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEG-TI 576 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~~~~~~~~i~~wd~~~~-~~ 576 (1128)
..+|+|. ....+++++.|+++++||++..+....+..|...|.++.|+.-...++ +++ .|+.|++||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999987 457999999999999999999988888999999999999998665554 554 5999999999875 46
Q ss_pred eeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcE
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i 653 (1128)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.||+ ++.++|+.+-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 778888776 89999999965 578889999999999998543 44444444 33678889988 77899999999999
Q ss_pred EEEEc
Q 001190 654 KILAN 658 (1128)
Q Consensus 654 ~iw~~ 658 (1128)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99974
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=217.24 Aligned_cols=281 Identities=15% Similarity=0.234 Sum_probs=230.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....|+++.|+++|. ++++++.|.+++|||..+|+++.. +..+...|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467899999999999 567788999999999999998754 555777899999988777777
Q ss_pred EEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 423 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
.++. |.+|+.-++.+.+.++ .|.||...|++++.+|-+. .++|++.|++|++|| ...++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 5889999999999999998 899999999999999 6666666665444444
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecC---CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~---~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
++|.| .|-++|++...+.|++||++.... -.++.. .....+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45544 677888888878999999987532 223332 3557899999999999998874 888999999999
Q ss_pred ceeeEeccccCCc--eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
..+.++.++.... -...+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999999887633 245789999999999999999999999999999998874 34578999999986666665 457
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=236.19 Aligned_cols=302 Identities=18% Similarity=0.259 Sum_probs=232.6
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
.|....+.+. |...|.++++.|.|- -+++||.|.+|++||+.....-. ..|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccc-hhhhc-------------cCcccccccce
Confidence 3444555555 788899999999999 46999999999999997644322 11221 23334568999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcc---------eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~---------~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
++||+.|..|++.+....++|+|.+.-+.+ +-...-.||...+++.+|.|+.+. .++|++.||++++||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 999999999999998889999998754332 223345699999999999999887 799999999999999
Q ss_pred c-CCCeEEEec-----CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee---eecCCCC--eEEEEEEcCCC
Q 001190 482 L-SGRKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH--WCTTMLYSADG 550 (1128)
Q Consensus 482 ~-~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~--~i~~~~~s~~g 550 (1128)
. ..+.+..+. +..-+++.++|++ ++..|++|+.||.|.+|+........ .-..|.. .|+|++||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 3 333333332 2334678888866 77899999999999999975543322 2334444 89999999999
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccC-CceeEEEEeCCCCEEEEEE------CCCcEEEEECCCCeeeEE
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~ 622 (1128)
++|++-+ .|..+++||++..+ ++....+... ..-+.++|+|+.+.|++|+ ..|.+++||..+.+.++.
T Consensus 377 ~~LlSRg----~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRG----FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhcc----CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999987 49999999998754 5555554332 2345689999999999986 467899999999999999
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
+..... .|..+.|+|.-+.|.+|+.||++++|--
T Consensus 453 i~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCCc--eEEEEeecchhhheeeecCCCceEEEEC
Confidence 887643 6889999999999999999999998743
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=232.67 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=232.1
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccc---cc-cCccccceeccCCCcceEEEEEc
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM---AA-CSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.-.|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|.. .. -..+.+... ++|...|.+++.|
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence 335999999999999999 678999999999999999985521 1111 00 112222222 4899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 999999999999999999999998877 5889999999999987777 699999999999999 7777788999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+.|.++.... -++.+-+|+.|+++++|++ ....+..+.++.+.+-|++|-.+. .+++|+. +|.|.+|++.+.
T Consensus 287 d~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KK 358 (479)
T KOG0299|consen 287 DGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKK 358 (479)
T ss_pred cceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeeccc
Confidence 9999997654 3356666679999999999 556677788888899999996654 5677763 999999999999
Q ss_pred ceeeEeccccC-----------CceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCCCCCcceEEEcC
Q 001190 575 TIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 575 ~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
+++.+....++ .-+++++..|..+.+++|+.+|.|++|-++.+ +++..+... +-|++++|++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~ 435 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSN 435 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEcc
Confidence 98887664332 14677889999999999999999999999887 445555443 3689999999
Q ss_pred CCCEEEEEE
Q 001190 640 EGNLLAVTT 648 (1128)
Q Consensus 640 ~~~~l~~~~ 648 (1128)
+|+.+++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999766663
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=244.45 Aligned_cols=292 Identities=21% Similarity=0.275 Sum_probs=239.1
Q ss_pred CCCcEE---EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 343 QGSTVI---SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 343 h~~~V~---~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
|...|. ++..++.+.++|.||+.||.|++|++..-..... .+ ....+..|.+.|..++..-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 5666655555889999999999999865443211 11 1223778999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE-ecCCCeEEEEEecCCCeEEEEe-cCC--CeE--------
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKL-------- 487 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f-s~d~~~~~l~s~s~d~~i~vWd-~~g--~~~-------- 487 (1128)
.|++++.|-+|++|+...+. .-...++..|...|.|+++ .++.. ++||||-|+.|.+|| .+| ..+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1222367889999999999 66666 899999999999999 655 222
Q ss_pred EEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 488 FNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 488 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
..+. |+...|++++..+ +|..+++|+..+.+++||-++.+....+.+|...|..+..++||..+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 2333 8889999999855 6689999999999999999999999999999999999999999999999985 9999
Q ss_pred EEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
++||+...+++.++..|.. .++++..+|+-.++++|+.||.|+.=|+.+......+-... .+|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCcee
Confidence 9999999999999999998 69999999999999999999999999998854333333222 26788888766566688
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=236.13 Aligned_cols=284 Identities=17% Similarity=0.257 Sum_probs=237.3
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
.|.+.+..+.|-++...|++++.|..|++|++..... .....+.+ ..+.|+.+.|.+
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaG--s~g~it~~d~d~ 229 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAG--SLGNITSIDFDS 229 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhc--cCCCcceeeecC
Confidence 3889999999999999999999999999998653221 11122333 677899999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
+++++++++ |+.+++|++...+...++.+|.+.|+++.|.. +...+++|+.|.+|++||+....+.+++-. ...+..
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnD 307 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCND 307 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-cccccc
Confidence 999988887 89999999999999999999999999999998 555599999999999999999988877652 344566
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQ 999 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~ 999 (1128)
+..+ ...++|+-.|+.|++||+.+..+....+.. +.++++..+++|..+++++ |..+.+.|+++.+....
T Consensus 308 I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred eEec--ceeeeecccccceEEEeccCCceeeEeecC-------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 6665 567889999999999999998877666655 7899999999999988865 99999999998887766
Q ss_pred cccCCC-CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 1000 WTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 1000 ~~~~~~-h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+..... .....+.+.||||+.|+++|+.||.|+||++.++++...+.... .+ ..+++++|+| .|..++
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~---------s~-~aI~s~~W~~-sG~~Ll 447 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST---------SN-AAITSLSWNP-SGSGLL 447 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC---------CC-cceEEEEEcC-CCchhh
Confidence 654321 14558999999999999999999999999999999988887321 22 2579999999 599999
Q ss_pred EEECCCcEEEEc
Q 001190 1079 IGLTDGSVKVME 1090 (1128)
Q Consensus 1079 s~~~dg~i~iWd 1090 (1128)
+++.++.+++|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999994
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=212.30 Aligned_cols=275 Identities=12% Similarity=0.205 Sum_probs=231.3
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw 656 (1128)
+.+++|.. .+.+++|.-+|..+++|+.|+++.+|+++..+........++...|-.++|+| ...++++++.|.+|++|
T Consensus 14 r~~~~~~~-~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQ-KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhh-cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 45566665 78999999999999999999999999999998888887778877899999998 56789999999999999
Q ss_pred EcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCC
Q 001190 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1128)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1128)
|.+.++...+..
T Consensus 93 d~r~~k~~~~i~-------------------------------------------------------------------- 104 (313)
T KOG1407|consen 93 DIRSGKCTARIE-------------------------------------------------------------------- 104 (313)
T ss_pred EeccCcEEEEee--------------------------------------------------------------------
Confidence 998774322110
Q ss_pred CCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccC
Q 001190 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1128)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1128)
..+.-.-+.|+|+|.++++++.|..|.+.|.....
T Consensus 105 --------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~------------------- 139 (313)
T KOG1407|consen 105 --------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYK------------------- 139 (313)
T ss_pred --------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccc-------------------
Confidence 11222457899999999999999888887654321
Q ss_pred CCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.+. .......+..++|+.++.++.... .|+|.|......+++.++++|+....|+.|+| +|+++|+|+.|-
T Consensus 140 ---~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 140 ---IVN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred ---eee----hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccc
Confidence 111 011456678889988777766555 69999999999999999999999999999999 999999999999
Q ss_pred cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCC
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 975 (1128)
.+.+||++.--+++.+..+.-+|..+.||.||++||++++|..|-|=++++|..+..++.. ++...|+|+|..
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-------~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-------GPTFTVAWHPKR 284 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-------CCceeEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999987766655 778899999999
Q ss_pred CEEEEE
Q 001190 976 VRMLVV 981 (1128)
Q Consensus 976 ~~l~~~ 981 (1128)
.+|+.+
T Consensus 285 ~LLAyA 290 (313)
T KOG1407|consen 285 PLLAYA 290 (313)
T ss_pred ceeeEE
Confidence 999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=231.20 Aligned_cols=283 Identities=20% Similarity=0.237 Sum_probs=237.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec--------------eee-cccccceeEEEEecCCCeE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~fs~d~~~~ 466 (1128)
...|.-+|.|++++||+++.++++.+++|.=|++.+|+..+.+ ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5669999999999999999999999999999999988743110 011 27889999999999999
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|-.. ...+++++.|+.|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 999999999999999999999654 36799999999999999999988889999999999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
....++.+-+++. |.++++|++.. .....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777664 99999999943 34455666655 788888864 46899999999999999999988877643
Q ss_pred CCC----------CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 626 ~~~----------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
..+ ...|++++..|...++++|+.+|.|++|-+..+.+.+..+.... ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 11578999999999999999999999999999866555554433 45679999999999988776
Q ss_pred CCC
Q 001190 696 GTP 698 (1128)
Q Consensus 696 ~~~ 698 (1128)
.+.
T Consensus 444 iGk 446 (479)
T KOG0299|consen 444 IGK 446 (479)
T ss_pred ccc
Confidence 543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=241.83 Aligned_cols=277 Identities=15% Similarity=0.226 Sum_probs=235.2
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
+-+.||..+ .||+| ....|.+|+..++..... ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346677554 67776 456899999999885431 22247899999999999999999999
Q ss_pred CeEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-ecCCCCCeEEEeccC
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPHH 504 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-~~~h~~~v~~~~~~~ 504 (1128)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999887766 4666 99999999998 44 799999999999999 55554444 899999999999976
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-CCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
|+.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||+.+++.+......
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 7789999999999999999888899999999999999999995 456666654 46999999999999998887765
Q ss_pred cCCceeEEEEeCCCCEEEEE--ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 584 RKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
. .|..+.|++..+.|+++ ..++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 59999999998888774 46789999999998888888755 458999999999999999999999999998764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=199.09 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=231.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.+..|.+++|.|.|...++++...++++..++.-.....+...+. .+ ..++...- ..|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-~p-------p~v~~kr~--khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-QP-------PSVLCKRN--KHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc-CC-------CeEEeeec--cccCccEEEEEecCc
Confidence 567899999999999999999999999876542111000000000 00 00111111 138899999999999
Q ss_pred CCeEEEEe-CCeEEEEECCC--ceE---EEEeeCCCCCeeEEEEcC---CCCCEEEEEe-CCCcEEEEecccceeeeccc
Q 001190 843 DSYVMSAT-GGKISLFNMMT--FKV---MTTFMSPPPASTFLAFHP---QDNNIIAIGT-EDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~--~~~---~~~~~~~~~~v~~l~~s~---~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~ 912 (1128)
|+++++|+ |.+|++...+. ... -.++.-|.+.|..++|.. .++.+|++++ .|..|++-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 78888875543 322 235667999999999965 2467888766 57789999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC-CCCCccEEEEcCCCCEEEEEe-cCeEEEEe
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK-TPTGDTRVQFNADQVRMLVVH-ETQLAIYD 990 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d 990 (1128)
+|++.|.++ ++-+|-++++|+.|.+|++||+.-..+..........+. ..+.|..++..|.|++|+++. |..-.+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 999999877 344688999999999999999987666554433322222 237899999999999999996 88999999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
++.++.+..+.+| ...|.++.|||.-.|+++++.|..|++-|+.. .+... ++..+++ .|...+..+.|+
T Consensus 260 irg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~e------l~~~vv~-ehkdk~i~~rwh 328 (350)
T KOG0641|consen 260 IRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHE------LPIMVVA-EHKDKAIQCRWH 328 (350)
T ss_pred eeCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeeccc-chhhc------CceEEEE-eccCceEEEEec
Confidence 9999999998876 89999999999999999999999999999863 22221 1222222 455666889999
Q ss_pred cCCCCEEEEEECCCcEEEEcC
Q 001190 1071 PLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
|+ ..-|++.+.|.++.+|-+
T Consensus 329 ~~-d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 329 PQ-DFSFISSSADKTATLWAL 348 (350)
T ss_pred Cc-cceeeeccCcceEEEecc
Confidence 96 677999999999999965
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=239.53 Aligned_cols=283 Identities=16% Similarity=0.302 Sum_probs=239.3
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE-EE
Q 001190 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VA 413 (1128)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 413 (1128)
.+.+.++ |++.|..+++.+.. .+++||.||++++|+-..++.+. .+.+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccce
Confidence 3445554 99999999999887 46889999999999976665543 2347778888888 88
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC
Q 001190 414 WSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (1128)
Q Consensus 414 ~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~ 492 (1128)
+-+ ++-.|++|+.|++|.+|...+.+++. +|.+|...|.++....++. ++|||.|.++++|- .|++...+.+
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~g 138 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQG 138 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCC
Confidence 886 55569999999999999999988776 6899999999999888875 89999999999998 5666777999
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|+..|++++..+.. .++||+.|.+|++|. .++...++.+|...|+.+++-+++.++ +++ +|+.|++|++
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~~- 207 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWDL- 207 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEec-
Confidence 99999999986642 899999999999994 467788899999999999999887655 454 4999999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
+|..+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..++. .|+++.+-++|. +++|+.||.
T Consensus 208 ~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~ 281 (745)
T KOG0301|consen 208 DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGR 281 (745)
T ss_pred cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCce
Confidence 8999999999998 89999988888999999999999999976 77777776654 588888888875 678888999
Q ss_pred EEEEEcccC
Q 001190 653 FKILANAIG 661 (1128)
Q Consensus 653 i~iw~~~~~ 661 (1128)
|+||.....
T Consensus 282 VrVfT~~k~ 290 (745)
T KOG0301|consen 282 VRVFTVDKD 290 (745)
T ss_pred EEEEEeccc
Confidence 999987643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=223.68 Aligned_cols=283 Identities=17% Similarity=0.203 Sum_probs=246.5
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
..++++...|... .+.||+.|..+.++|...++.+.. ++||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3688999998844 689999999999999998887653 99999999999999999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC--CCCCeEEEe
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~--h~~~v~~~~ 501 (1128)
+.|..|+||......... ....|.++|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 4678999999999999999 899999999999999 88988766653 234589999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
||| ||-++.+|..||.|++||+........+.+|.++|.+++|+.+|-+|++++. |+.|++||++..+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999988899999999999999999999999984 7889999999999888888
Q ss_pred cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
......+..+.|.+.|.+|+.++.|=.|++++..+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 87766799999999999999999888888888666554444444444557889999999999999999999888753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=245.63 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=193.6
Q ss_pred eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCc-
Q 001190 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1128)
Q Consensus 363 gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~- 440 (1128)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 455677777776544332 248899999999999997 79999999999999999986432
Q ss_pred c----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe
Q 001190 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1128)
Q Consensus 441 ~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1128)
. .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 112247799999999999999874 568999999999999 7787777775 667899999977 678999999
Q ss_pred ccCcEEEEecCCCCceeeecCCCCeEEE-----EEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCc-e
Q 001190 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKS-N 588 (1128)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~-----~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v 588 (1128)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888764432 345689999999886544456899999995 55666554433212 2
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
......+++.++++|+.|+.|++|++..+.. ..+....+..++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2233345578888999999999999987753 333333344578899999964
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=247.33 Aligned_cols=273 Identities=15% Similarity=0.237 Sum_probs=213.0
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCC---------------CCCC----------ceeeee--------
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---------------NPSG----------KATASA-------- 808 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~---------------~~~~----------~~~~~~-------- 808 (1128)
.|.+.|.++-|++||+||+++|.||.|+||.+...+. ...+ +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999887211 0000 000000
Q ss_pred -ccceeccCCCcccc---ccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 809 -VPQHWLPSSGLLMA---NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 809 -~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.-.+.......... ..+.| |...|..+.||.++ +|++++ |.+|++|++...++++.|. |..-|+|++|+|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--Ht~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--HTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhc--cchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 00011111111111 12334 99999999999876 555666 9999999999999999997 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC-
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT- 962 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~- 962 (1128)
|.+|+++|+-||.|+||++...+.+.-...+ .-|++++|.|||++.+.|+.+|.+++|+....+......+.......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999998877666555 88999999999999999999999999999987766665555433221
Q ss_pred -CCCccEEEEcCCCC--EEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 963 -PTGDTRVQFNADQV--RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 963 -~~~v~~v~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
...|+.+.|.|... .|+++.|..|+|||..+...+..+.+... ...=....|+.||++|+++++|..|+||++...
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 14699999987543 77777899999999999999999887665 344457789999999999999999999998554
Q ss_pred c
Q 001190 1040 R 1040 (1128)
Q Consensus 1040 ~ 1040 (1128)
.
T Consensus 579 ~ 579 (712)
T KOG0283|consen 579 N 579 (712)
T ss_pred c
Confidence 4
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=241.17 Aligned_cols=241 Identities=17% Similarity=0.244 Sum_probs=205.2
Q ss_pred EEEEc-cCCCEEEEEeCCCeEEEEEccCCCcc--e-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-
Q 001190 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL--R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1128)
Q Consensus 411 ~l~~s-pdg~~las~~~d~~i~vwd~~~~~~~--~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g- 484 (1128)
.+..+ |.++||.+||.||.|++|++..-... . ....++.|.+.|++++...+|+ .|+|+|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998643221 1 1335789999999999999998 799999999999999 555
Q ss_pred -CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----------eec-CCCCeEEEEEEcCCCCe
Q 001190 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSR 552 (1128)
Q Consensus 485 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~-~~~~~i~~~~~s~~g~~ 552 (1128)
-+..++..|.+.|.|+++. ..+...+++|+.|+.|.+||+.++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5778899999999999984 3356799999999999999998764311 122 45568999999999988
Q ss_pred EEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+++|+. ++.+++||.++++.+..++||.+ .|.++..+.||.+++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 88899999999999999999998 899999999999999999999999999999999999887765 59
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999988777653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=246.16 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=209.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc----------eeceeecccccceeEEEEec-CCCeEEEEEecC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~ 473 (1128)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3445666777788777778877777777776544322 11224779999999999999 777 8999999
Q ss_pred CCeEEEEe-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 474 d~~i~vWd-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567899999999999998853 36899999999999999999888888888999999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCe-ee
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~-~~ 620 (1128)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+.+.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999884 999999999999999999988765556678888888888765 47999999998754 33
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
.....+ ....+....|++++++|++++ .|+.|++||+.++. ....... ....++..++|.|.
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~----~s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSY----SSVEPHKGLCMMPK 314 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeec----cCCCCCcceEeccc
Confidence 333322 223455667899999999887 49999999998873 2222211 12234566666664
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=212.09 Aligned_cols=302 Identities=17% Similarity=0.230 Sum_probs=222.0
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
+|...|++++|+.||+.|++++.|++|++|++..-........
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~------------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI------------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-------------------------------------
Confidence 5556899999999999999999999999999876311110000
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-c
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-N 785 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-d 785 (1128)
...+ ..+..+.++|+||-+.+++... .
T Consensus 127 -----------------------------------------------R~nv-----e~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 127 -----------------------------------------------RQNV-----EYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred -----------------------------------------------hccc-----cCCCceEEEECCCcceEEEEEccC
Confidence 0000 1123466778888776655544 5
Q ss_pred ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceE
Q 001190 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (1128)
Q Consensus 786 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~ 864 (1128)
..+++|.+...+. |..... ...||-. .+. ..|.-.+..+-...++++|++++ |..|.+|++. |+.
T Consensus 155 ~~l~vyk~~K~~d---G~~~~~--~v~~D~~-------~f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD---GSGSHH--FVHIDNL-------EFE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CEEEEEEeeeccc---CCCCcc--ccccccc-------ccc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 6788887654321 221111 1112210 010 12566677788888999999998 7789999998 899
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc---c-----eeeecccccccCeeEEEEcCCCCEEEEEcCC
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---D-----EVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D 936 (1128)
+..+......-...++|| +|+++|+++---.|++|..-- | ..+..++||...|..++||++...++|++.|
T Consensus 221 L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 988887777788899999 999999999999999998742 2 3456789999999999999999999999999
Q ss_pred CcEEEEECCCCccc----ceeEEe-ecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeE
Q 001190 937 AQLCVWSIDTWEKR----KSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPIS 1011 (1128)
Q Consensus 937 g~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 1011 (1128)
|+++|||++-.-.. ..+... .+..........+..+|.|+.|+++....+.+|..++++....+... |...|.
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h~~~Is 377 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--HSTTIS 377 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--hcCcee
Confidence 99999998642111 111111 12222235566999999999999999999999999999887776643 489999
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEe
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++|++||+++++++ |..++|+.
T Consensus 378 ~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeec-ceeeeeec
Confidence 999999999999987 88888876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=209.48 Aligned_cols=253 Identities=14% Similarity=0.255 Sum_probs=207.9
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
........+.-.+.+..|+|++.....+++++.||+++|||...... +.+.+++|...|.++
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSV 110 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEe
Confidence 33445556678899999999999887889999999999999533221 223488999999999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEE
Q 001190 413 AWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1128)
Q Consensus 413 ~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~ 489 (1128)
.|++ +++.+++++-|++|++|+...++.+. ++.||...|...+|+|-... +++++|.|+++++|| ..|+.+.
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~- 185 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS- 185 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-
Confidence 9999 56677888999999999999887666 68999999999999997666 899999999999999 5666665
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCC-eEEEeeeccCCCceEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~ 567 (1128)
+..|...|.++.|+.. +...++||+.|+.|+.||++..+. ..++.+|+-.|+.++|||... .|++++. |-+++
T Consensus 186 i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~r 260 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVR 260 (311)
T ss_pred EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEE
Confidence 8899999999999865 457999999999999999987554 457888888999999999765 5566664 99999
Q ss_pred EEeCCCCc-eeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEEC
Q 001190 568 EWNESEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 568 ~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~ 614 (1128)
+||...+. .+.+...|. +.+..+.|++ ++.++++++.|+.++||+.
T Consensus 261 iw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHT-EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhhhhhhccc-eEEeccccccccCceeeecccccceeeecc
Confidence 99998654 444455444 4788888876 4578999999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=225.16 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=232.0
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
-+|.++|.|++=+|..-..+|+|+.||.|+|||+.+..++.. +..|.+.|..|++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 379999999999999744789999999999999998877654 888999999999987 78
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+++++.|++|+.|.++.. +++ ++.+ ...+..+.-+..+. .++|||. .|.||| ....++..+.--.+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 333 3332 34567777766666 7888874 588999 888899999888889999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC-ceee
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 578 (1128)
+.|+|... .+|++++.|+.|.+||++.......... ....+.++|+|.+-.++++. +|..++.+|++.. .++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998764 6889999999999999998877655442 23467899999655555554 6999999999875 4677
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+.+|.. .|..+.|+|.|+.+++||.|.+|+||....+......-. .....|.|+.||-|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7888876 888999999999999999999999999988765443322 22346899999999999999999999999987
Q ss_pred ccC
Q 001190 659 AIG 661 (1128)
Q Consensus 659 ~~~ 661 (1128)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=214.64 Aligned_cols=295 Identities=13% Similarity=0.186 Sum_probs=240.6
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+.+.+ +|+++||.|+-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|.|++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 334444 4999999999887766 899999999999999999999865 8899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEcc------C--------CC----------------------cc-eeceeecccccceeEE
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYA------G--------SN----------------------DL-RQHSQIDAHVGAVNDL 457 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~------~--------~~----------------------~~-~~~~~~~~h~~~v~~l 457 (1128)
++.+.++++++.|++..||... . ++ .+ ..+..|.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999721 1 00 01 1233578999999999
Q ss_pred EEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeec
Q 001190 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYD 535 (1128)
Q Consensus 458 ~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~ 535 (1128)
.|...|+ .+++++.|.+..+|| .+|.++..+.||....+.++-+| ..+++++.+.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 699999999999999 99999999999999999998877 45899999999999999997532 345789
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
+|...|++..|..|. .+++++ .|.+|++||+++.+ ++.++.... .+..++.+..+..|+.--.+..|++||+
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccccceeEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEec
Confidence 999999999998775 466666 48999999998865 555665443 6788888887778888888999999999
Q ss_pred CCCeeeEEE--ecCCCCCCcceEEEcCCC--CEEEEEEcCCcEEEEEcccC
Q 001190 615 DNVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 615 ~~~~~~~~~--~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~ 661 (1128)
...++.... ...+|..-|.|++|..+. .-|.+++.|..+.-|.++..
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 766543322 233555578999998653 35778888999999988754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=245.41 Aligned_cols=278 Identities=17% Similarity=0.246 Sum_probs=233.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...+.+..+. ...+++++.++++++|+. .++..+...+.+ |.+.|.+++|..-
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~----------------------~~~~~i~~~l~G--H~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDL----------------------NNGYLILTRLVG--HFGGVWGLAFPSG 260 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeec----------------------ccceEEEeeccC--CCCCceeEEEecC
Confidence 44566777777 556889999999988854 455555555666 9999999999887
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
+.++++|+ |.++++||+.+|++...+.+|...|.++...+ .++++|+.|.+|++|++.+++++..+.+|.++|.++
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 88999999 99999999999999999999999999999854 688899999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc-ccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM-ERIRQ 999 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~-~~~~~ 999 (1128)
..+ +.++++|+.|++|++||+.+++++..+ .+|. ..|.++.+.+. ..++.|+ |+.|++||+.+. +++..
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl-----~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL-----SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhceeeeee-----cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 997 789999999999999999988865544 4444 78889888777 6677765 999999999999 88888
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
+..+ ..-+..+.+ .+++|++++.|+.|++||.++++.+..+.. .|...+..+++. ...+++
T Consensus 409 l~~h---~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-----------~~~~~v~~l~~~---~~~il~ 469 (537)
T KOG0274|consen 409 LQGH---TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-----------RHVGGVSALALG---KEEILC 469 (537)
T ss_pred hcCC---ccccccccc--ccceeEeccccccEEEeecccCceeeeecc-----------CCcccEEEeecC---cceEEE
Confidence 8776 555655554 688999999999999999999999999982 144555666654 368999
Q ss_pred EECCCcEEEEcCCCCCCC
Q 001190 1080 GLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~~~ 1097 (1128)
++.||++++||+.+++..
T Consensus 470 s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 470 SSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EecCCeeEEEecccCchh
Confidence 999999999999998764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=226.48 Aligned_cols=514 Identities=16% Similarity=0.219 Sum_probs=338.1
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecC
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYD 526 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~ 526 (1128)
|-...-..-.|++|++. ++.+. +..|.|+. .+|.++..+.+|..++..+.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333444579999994 44333 67999999 999999999999999999999887654 678899999999999998
Q ss_pred CCCceeeecCCCCeEEEEEEcC----CCCeEEEeeeccCCCceE-EEEeCCCCc-----eeeEeccccC------CceeE
Q 001190 527 TMGSRVDYDAPGHWCTTMLYSA----DGSRLFSCGTSKDGDSFL-VEWNESEGT-----IKRTYAGFRK------KSNGV 590 (1128)
Q Consensus 527 ~~~~~~~~~~~~~~i~~~~~s~----~g~~l~~~~~~~~~~~~i-~~wd~~~~~-----~~~~~~~~~~------~~v~~ 590 (1128)
.+....++..+.. +..+.+.| .. ..+..+. ++..+ ......... .+.++..+.. ..-.+
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s-~~~~~s~---~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADIS-ANVYVSV---EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCcc-ceeEeec---ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 8877777665543 33333322 11 1221111 01111 000011111 1111111111 01345
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEE--EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccc
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1128)
+.+++.+.+.... .+..+.+|+......... -....|.-.+++.++||+++++|+|..||.|.+|.-...
T Consensus 166 I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------- 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------- 237 (792)
T ss_pred EEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence 6777776655444 456788998877541111 111123334789999999999999999999999964221
Q ss_pred cCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEee
Q 001190 669 ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD 748 (1128)
Q Consensus 669 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 748 (1128)
. +.+-+..+|..
T Consensus 238 ~---------------------------------------------------------------~~~~t~t~lHW----- 249 (792)
T KOG1963|consen 238 S---------------------------------------------------------------DDSETCTLLHW----- 249 (792)
T ss_pred c---------------------------------------------------------------cccccceEEEe-----
Confidence 0 00012222222
Q ss_pred CCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCC
Q 001190 749 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828 (1128)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1128)
|...|.+++|+++|.+|++||..|.+.+|.+.+. . ...++.
T Consensus 250 --------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR- 290 (792)
T KOG1963|consen 250 --------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR- 290 (792)
T ss_pred --------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc-
Confidence 7789999999999999999999999999976532 2 122333
Q ss_pred CCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCC-----------CCCeeEEEEcCCCCCEEEEEeCCCc
Q 001190 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-----------PPASTFLAFHPQDNNIIAIGTEDST 896 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~l~~s~~d~~~lasg~~dg~ 896 (1128)
...+|..+.+|||+.+.+... |+.|.+....+.+...++.+. .+-.+.++++| .-+.++..+..|.
T Consensus 291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH 368 (792)
T ss_pred -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence 678899999999999888775 999999988776665555432 22367788998 6777888899999
Q ss_pred EEEEecccceeeeccc-----------ccccCeeEEEEcCCCCEEEEEc--------CCC--cEEEEECCCCcccceeEE
Q 001190 897 IHIYNVRVDEVKSKLK-----------GHQKRITGLAFSTSLNILVSSG--------ADA--QLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 897 v~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~~--------~Dg--~i~iwd~~~~~~~~~~~~ 955 (1128)
|.+||+-+.+.+..+. .+.-.+++++.+..|.+++|+- .|| .+++|-.....+...+..
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 9999998876554432 2334688888998999999874 233 578999988877777777
Q ss_pred eecCCCCCCCccEEEEcCCCC-EEEEE-ecCeEEEEecCCcccccc----c---ccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 956 HIPAGKTPTGDTRVQFNADQV-RMLVV-HETQLAIYDASKMERIRQ----W---TPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~~-~l~~~-~d~~i~v~d~~~~~~~~~----~---~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
.+...|....+..+..++... .++++ .|+.++||-....+.+.. | ..+..|..++++++||.||..|+++
T Consensus 449 ~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s- 527 (792)
T KOG1963|consen 449 KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS- 527 (792)
T ss_pred EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-
Confidence 777777755555555555444 55554 699999999854433221 1 1122468999999999999866655
Q ss_pred cCCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecC-CCCEEEEEECCCcEEEEcCCCCCCCccc
Q 001190 1027 CDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-EPNQFAIGLTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1027 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~l~s~~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
.|+.|.+||..+ .++.+......+. +..+.|..+ -....+.....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSRNWP------------IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhccccccccc------------hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 689999999999 5555544422111 111222111 0122334445678999999999999943
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=225.46 Aligned_cols=564 Identities=13% Similarity=0.141 Sum_probs=350.1
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCe-EEEEEecCCCeEEEEe-cCCCe
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~-~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
-..-.||+|+++++.+.. ..|.||...+|++++ .+.+|..++..+.+.|.... .++++++.||.|++|| ..+.+
T Consensus 19 ~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 334579999999987765 479999999999888 58899999999999887653 4788999999999999 88888
Q ss_pred EEEecCCCCCeEEEeccC--CCCccEEEEEeccC------------cEEEEecCCCCcee-eecCCCCeEEEEEEcCCCC
Q 001190 487 LFNFEGHEAPVYSICPHH--KENIQFIFSTAIDG------------KIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg------------~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~ 551 (1128)
+.++..+.. +..+.+.+ -.....+..+..|. .++-+.+.+..... .+......-.++.+++.|.
T Consensus 95 lkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 887764432 33332211 00111111222221 11111111111000 0000111246788888888
Q ss_pred eEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC--CeeeEEEecC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAE 626 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~ 626 (1128)
+..... +..+.+|+..++.. .+....++...+.+.+++|.+++++++..||.|.+|.--. +........|
T Consensus 174 ~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 174 FKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 877765 66789999887551 1112233333578899999999999999999999997543 3333333345
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
-|...|.+++|+++|.+|++|+..+.+.+|.+.++.+.+-
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL---------------------------------------- 288 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL---------------------------------------- 288 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCcccc----------------------------------------
Confidence 5666899999999999999999999999999988732110
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
|. -.+.|..+.++||+.+......|+
T Consensus 289 ---------------------------------------------------PR---Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 289 ---------------------------------------------------PR---LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred ---------------------------------------------------cc---cCCeeEEEEEcCCCCeEEEEecCc
Confidence 00 345678888888888888888888
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCCceEE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVM 865 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~ 865 (1128)
.|.+-..........-... ...+... -. ...+-.+.++++|--+.++.. ..|.|.+||+.+-+.+
T Consensus 315 qI~li~~~dl~~k~tIsgi--------~~~~~~~----k~--~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGI--------KPPTPST----KT--RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred eEEEEeccchhhhhhccCc--------cCCCccc----cc--cccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 8888765332210000000 0000000 00 133446778888844444444 4899999999887766
Q ss_pred EEee-----CC------CCCeeEEEEcCCCCCEEEEEe--------CCC--cEEEEecccceee-----ecccccccCee
Q 001190 866 TTFM-----SP------PPASTFLAFHPQDNNIIAIGT--------EDS--TIHIYNVRVDEVK-----SKLKGHQKRIT 919 (1128)
Q Consensus 866 ~~~~-----~~------~~~v~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~~-----~~l~~h~~~V~ 919 (1128)
..+. .+ .-.+++++.+. .|.+++++- .|| .+++|-......- .....|...+.
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 5543 12 22478888888 699998874 333 4778876543221 22345777666
Q ss_pred EEEEcCC-CC-EEEEEcCCCcEEEEECCCCcccce----eEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCC
Q 001190 920 GLAFSTS-LN-ILVSSGADAQLCVWSIDTWEKRKS----VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 920 ~l~~s~d-~~-~l~s~~~Dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~ 993 (1128)
..+|.+. .. .+++++.||.++||-+...+.+.. -..+........++...+|+.||..|+++.++.|.+||..+
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 6666443 23 899999999999999843221111 11111111233788999999999999999999999999988
Q ss_pred cccccccccCCCCCCCeEEEEEee----CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC----cccCCCCccceE
Q 001190 994 MERIRQWTPQDALSAPISCAVYSC----NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP----SVLNGSQTVYPL 1065 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 1065 (1128)
........... ..++..+.|.. |+. +.......+.+|++.++.+............ .+....+.+...
T Consensus 540 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~ 615 (792)
T KOG1963|consen 540 KNELLCTEGSR--NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGST 615 (792)
T ss_pred hhhhhcccccc--ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCcc
Confidence 43322222211 33444444433 333 3444678999999999888773332111111 000112222223
Q ss_pred EEEEecCCCCEEE--------EEECCCcEEEEcCCCCC
Q 001190 1066 VVAAHPLEPNQFA--------IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~--------s~~~dg~i~iWd~~~~~ 1095 (1128)
..++.+..+..+. ..+.|+.|.+|+.+..+
T Consensus 616 ~f~vi~~~p~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 616 AFAVICWLPELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred ceEEEeecccchhhhhhhhhhcccccceEEEecCCCch
Confidence 3333332223333 78889999999888776
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=222.62 Aligned_cols=241 Identities=17% Similarity=0.262 Sum_probs=200.7
Q ss_pred ccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+.||..+|.|+|=+|.. ..+|+|+.||.|+|||+...++++ ++..|.+.|..|++.. + .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999987 889999999999999999988777 5889999999999987 3 58999999999999
Q ss_pred ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
-..|.+++++.+.. .+..+.-+. .+..++|++. .|.|||.........+.-....|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg~s-~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGKS-VYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeeccc-ccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 98888888876533 455555443 3357778775 5889999888888888888889999999998877666554
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.|+.|.+||++++.+++...... ....++|+|.+-.+++|++|..++.||+...+ ++.... +|.+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCC
Confidence 48999999999999887765443 35669999987788889999999999998754 344444 4556899999999
Q ss_pred CCCEEEEEEcCCcEEEEEcccC
Q 001190 640 EGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|+-+++|+.|.+|+||..+.+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999988765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=206.88 Aligned_cols=268 Identities=17% Similarity=0.260 Sum_probs=214.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.|..|.|+|.+..| ++++.||++++||+....... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 46789999999998855 555799999999998764432 334899999999987 56788
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|+.||.|+.+|++++.... +..|..+|+++.+++... .+++||.|++|++|| ........+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 799999999999999 4433333333 344788887
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC----c
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----T 575 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~----~ 575 (1128)
. .+..|++|+.|..|.+||++.......... -...++++++-|++.-.++++. +|+|.+=..+.. .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 6 456899999999999999988766553222 2347899999998777777764 777877666554 4
Q ss_pred eeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
....|+.|.. .+|..++|+|--+.|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4556666653 25788999999999999999999999999999888877644 3369999999999999999
Q ss_pred Ec
Q 001190 648 TA 649 (1128)
Q Consensus 648 ~~ 649 (1128)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=218.66 Aligned_cols=293 Identities=14% Similarity=0.204 Sum_probs=234.2
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+.+.+|.|.+-|+++.+|...+ .+.||+ .|.|+|||+...... .++ ..--.....+.|+++.+
T Consensus 410 arq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k--~Pv------------sqLdcl~rdnyiRSckL 473 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNK--SPV------------SQLDCLNRDNYIRSCKL 473 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCC--Ccc------------ccccccCcccceeeeEe
Confidence 34567888999999999999988 568875 679999999654211 011 11112235678999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+|||+.|++|+.-.++.|||+.+.... ....+..-.-..++++.+||.+ +.++|..||.|.||| .+...++.|.||
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCC
Confidence 999999999999999999999876432 2223444455788899999999 888999999999999 777788999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+.+.|+.++. ||..|.+|+-|++||.||++.+........ ...|.++.++|.+.+++.+-. ++.+.+.....
T Consensus 551 tDGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~sk 623 (705)
T KOG0639|consen 551 TDGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSK 623 (705)
T ss_pred CCCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCC
Confidence 99999999965 788999999999999999988776654432 346999999999999999874 66676666543
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
. ....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.+|.|.+++++|+.|...
T Consensus 624 p-~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 624 P-EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred c-cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcce
Confidence 3 2334444444 788899999999999999999999999998887766643 3479999999999999999999888
Q ss_pred EEEEc
Q 001190 654 KILAN 658 (1128)
Q Consensus 654 ~iw~~ 658 (1128)
.+|.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=207.03 Aligned_cols=243 Identities=19% Similarity=0.235 Sum_probs=204.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+..|.++|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+..|.+.|+++.|.++-....|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999995 8999999999999999999877665 56789999999999988642259999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+ ..-.++..+++|.+.|+.+++||+ +++.++.+.|+.+++||+-.++.-..+..... ...+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 778899999999999999999995 58999999999999999988877776665443 34499999999888876
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE--
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-- 637 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 637 (1128)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..| ..+|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEe
Confidence 6679999998877766665442 35555554 5678999999999999999998888877755 448888874
Q ss_pred cCCCCEEEEEEcCCcEEEEEcccC
Q 001190 638 SKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|++.+|++++.||.|++||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 568899999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=215.95 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=225.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
..|..+-+.++|.|+|. +|.+++.||.|++|+...-... + ..+..|+..|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~-----------------P-~ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEE-----------------P-ETIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccC-----------------C-chhhccCceeEEEeec--ccc
Confidence 36888999999999999 7788889999999997654211 0 1122277788888764 459
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
|++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ ++|.||.|-.|++-+ .++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445677899999999999 899999999999999 888889999999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.|+| ++.+|++.+.||.|++|+++.+.....+..- ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99977 6689999999999999999987776654432 336778999999766666653 899999999
Q ss_pred CCCceeeEeccccCCc-eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 572 SEGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+......+....... +..+.|+|.|.||++++.||.|.|||.++-+. +.....|.+++|.|+.+.+-.-...
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 9999888887654433 88899999999999999999999999988222 3334579999999998877666655
Q ss_pred CcEEEE
Q 001190 651 NGFKIL 656 (1128)
Q Consensus 651 g~i~iw 656 (1128)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=206.78 Aligned_cols=276 Identities=16% Similarity=0.170 Sum_probs=214.8
Q ss_pred CCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCC-CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 404 DVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 404 ~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..++.|.+|+||| ...++++++-|++||+|+++.. .... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 3578999999999 5556668899999999999873 3332 24568999999999999998 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+| .+..+..|.++|..+.|.+..+-..|++|+.|++|++||.+......++..++. ++++..- ..+++.+.
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVat--- 173 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVAT--- 173 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEe---
Confidence 666 677888899999999998776667899999999999999998888777776653 5554432 23455554
Q ss_pred CCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEEEecCCC-------CC
Q 001190 561 DGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------LP 630 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1128)
.+..|.+|+++.+.. .+.....-+..+.++++..+....+.|+-+|.+.|..+..+ +.-..+..|.. .-
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 388899999976543 23333333446889999998888899999999999998876 33334444442 22
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1128)
.|++++|+|.-..|++++.||++.+||-+...+ ++. ...+..+|.+..|+.+|++++++.+
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~-----s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKT-----SETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhhhh-hhc-----cCcCCCccceeEecCCCCEEEEEee
Confidence 578899999989999999999999999876522 222 2335568999999999999987644
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=205.39 Aligned_cols=305 Identities=13% Similarity=0.196 Sum_probs=220.3
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
..+++|.+.|++++|+. ||++|++++.|+.|++|+++...... ....+-+..+.+.|+||-+.++.... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999965 88999999999999999997754322 22223335788999999988776664 36
Q ss_pred ceEEEEeCCC---CceeeE--------eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 564 ~~i~~wd~~~---~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
..+++|.... |..... |...+.-.+-.+-....+.+|++++.|..|.+|++. |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 6788887643 221111 111111123334555667899999999999999998 888887764332 44
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
...+.||+|+++++++..-.|++|.. .|..||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 67889999999999999999999974 222333211
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
...+++.+ .||...|..++|+++..++++.+.||.+++||
T Consensus 267 -----------------------ev~rvf~L-----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFSL-----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhee-----------------ccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 22234443 34999999999999999999999999999999
Q ss_pred ccccCC-CCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee-C
Q 001190 793 WHRNEQ-NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1128)
Q Consensus 793 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~ 870 (1128)
.+..-. ..+.+ -+..|. .++.. .......++++|.|+.||.+....+++|..++|+...+++ .
T Consensus 307 tdVrY~~~qDpk----------~Lk~g~---~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPK----------ILKEGS---APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCch----------HhhcCC---cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 764311 00000 011111 11111 3344458999999999999999999999999998877765 5
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~ 902 (1128)
|...|.+++|++ +|+++|+++ |..++++.-
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 889999999999 999999887 788888763
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=234.85 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=193.2
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCC--------eEEEecCC
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~--------~~~~~~~h 493 (1128)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +. +|+||+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5678889999987754433 68899999999999997 56 899999999999999 4432 34567899
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
...|.+++|+|.. ..+|++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998853 2356799999999999999887766665 4568999999999999998873 88999999999
Q ss_pred CceeeEeccccCCc----eeEEEEeCCCCEEEEEECCC----cEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
++.+..+.+|.+.. +....|++++++|++++.|+ .|++||+++ ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999988632 12234568899999988764 799999985 5666666555544333334445568899
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccc
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
++|..|+.|++|++..+. ...+.. .....++.+++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeecc---cccCCCccceEEccccc
Confidence 999999999999997652 222221 11345677788888644
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=203.64 Aligned_cols=252 Identities=20% Similarity=0.301 Sum_probs=208.5
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~ 478 (1128)
+...|.+.|..+...--|++||+|+.|++|+|+.+........+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999998888899999999999999999998776666778999999999999987 688 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCC---
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 549 (1128)
||. ..|+ .......|...|++++|.|.+-|-.|++++.||.|.+.+++..+. ......|.-.|+++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5553 245667899999999999999999999999999999999877622 2345567778999999986
Q ss_pred C-----------CeEEEeeeccCCCceEEEEeCCCCc--eeeEeccccCCceeEEEEeCCC----CEEEEEECCCcEEEE
Q 001190 550 G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1128)
Q Consensus 550 g-----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~iw 612 (1128)
| +.|++++. |..|+||+...++ ..+++.+|.+ -|..++|.|.- .+|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56888885 9999999998764 4456888887 89999999864 579999999999999
Q ss_pred ECCCC-eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..... +.-.....+.....+..+.||..|+.|++++.|+.+.+|.-+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87532 121111222334468999999999999999999999999754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=212.76 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=211.3
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
-.+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888887899999999999999999988776 6899999999999999998 799999999999999 6666
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.......|+++|+.+..++ +|.||++++.||++.+.|++++......... .-.+++.+|.|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 7778888999999999987 5679999999999999999998877665543 347899999999999998884 9
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
+.+++||+.++..+..|.+|.. .|..++|+.+|-+|++++.|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999887 9999999999999999999999999999999988888876654 7899999999999
Q ss_pred EEEEEcCCcEEEEE
Q 001190 644 LAVTTADNGFKILA 657 (1128)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (1128)
|+.++.+=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997765555554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=203.47 Aligned_cols=324 Identities=15% Similarity=0.264 Sum_probs=229.3
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
.+.||...|+.++...... .+.+++.|.+.+||. .+|+++..+.||.+.|+++.|++ .+.++++++.|++-.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence 5889999999999876555 899999999999999 99999999999999999999988 457999999999999996
Q ss_pred cCCCCceeee---cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 525 YDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 525 ~~~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..-.-....- ..|... ....-+........+.. +....+|+ .++..+.+|.. .|.++.|-..|+.++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~-~sD~~tiR-------vPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSE-KSDGHTIR-------VPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhccccccccccccc-ccCCceee-------eeeeeeecccc-ceEehhhhcCcceee
Confidence 3211110000 000000 00000000000000000 00011222 35677888887 888889999999999
Q ss_pred EEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcce
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (1128)
+++.|.+..+||+++++++..+.+|.+ ..+-++-+|..+++++.+.|.+.++||+.... .
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------------------~ 348 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------------------Q 348 (481)
T ss_pred eeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhc------------------c
Confidence 999999999999999999999987655 68888999999999999999999999986321 1
Q ss_pred eeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCC
Q 001190 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST 761 (1128)
Q Consensus 682 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 761 (1128)
++++ + .
T Consensus 349 sV~V-----------------------------------------------------------------------F---Q 354 (481)
T KOG0300|consen 349 SVAV-----------------------------------------------------------------------F---Q 354 (481)
T ss_pred eeee-----------------------------------------------------------------------e---c
Confidence 1100 0 1
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
| |.+.|+++.|..
T Consensus 355 G-------------------------------------------------------------------HtdtVTS~vF~~ 367 (481)
T KOG0300|consen 355 G-------------------------------------------------------------------HTDTVTSVVFNT 367 (481)
T ss_pred c-------------------------------------------------------------------cccceeEEEEec
Confidence 1 455555555554
Q ss_pred CCCeEEEEe-CCeEEEEECCCceE-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee----cccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQ 915 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~----~l~~h~ 915 (1128)
|.+. ++|+ |.+|+|||+.+... +.++. -..++..++++. ++.++|.--.+..|++||+...++.+ .-++|.
T Consensus 368 dd~v-VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 368 DDRV-VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CCce-eecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 4433 3333 55666666665432 33443 456788899998 88899999999999999997554322 335899
Q ss_pred cCeeEEEEcCCCC--EEEEEcCCCcEEEEECCCC
Q 001190 916 KRITGLAFSTSLN--ILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 916 ~~V~~l~~s~d~~--~l~s~~~Dg~i~iwd~~~~ 947 (1128)
.-|+|++|..+.. -|+++|-|..+.-|++...
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999986643 5889999999999998763
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=217.65 Aligned_cols=282 Identities=13% Similarity=0.176 Sum_probs=229.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|..-|.++.++...+++++++ .|.|+|||+.... .. ..+ ..+........|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg-----~k--------------~Pv-sqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPG-----NK--------------SPV-SQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCC-----CC--------------Ccc-ccccccCcccceeeeEecCC
Confidence 777788889999888888776 4689999986421 10 000 01222236778999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
|+.|++|+ -.++.|||+..-.. ..++........+++.+| |.++.++++.||.|.|||+.+...++.|+||++.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999998 57799999986544 334444445688999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
|+.+++||..|-||+-|.+||-||+..+.++....+. +.|.++..+|.+.|+++|- .+.+.|........ .
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-------SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-y 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-Y 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-------hhheecccCCCccceeeecccCcEEEEecCCccc-e
Confidence 9999999999999999999999999998876555444 7889999999999999985 77788877654433 2
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+. -|.+.|.++.|++-|+++++.+.|+.+-.|...-|..+.... ....|+++..+. |..+++
T Consensus 628 qlh---lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCDIS~-ddkyIV 690 (705)
T KOG0639|consen 628 QLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISF-DDKYIV 690 (705)
T ss_pred eec---ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------------ccCcceeeeecc-CceEEE
Confidence 222 248999999999999999999999999999999998777655 334568888887 689999
Q ss_pred EEECCCcEEEEcC
Q 001190 1079 IGLTDGSVKVMEP 1091 (1128)
Q Consensus 1079 s~~~dg~i~iWd~ 1091 (1128)
+|+.|..-.||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888865
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=198.92 Aligned_cols=297 Identities=14% Similarity=0.178 Sum_probs=223.1
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
+.|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|-..- .++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 45566777777766 89999999998 7899999999999999886532 358999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~ 491 (1128)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-..+..+++-- +..-.+-+.+......+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeecc
Confidence 999999999999999999999999999987754 357789999999977764444433 433444442222112221
Q ss_pred CCC-CCeEEE--eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC-CeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 492 GHE-APVYSI--CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 492 ~h~-~~v~~~--~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
... +..... +-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|++++..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 111 111111 11134567999999999999999999998887776665 68999999999999999884 99999
Q ss_pred EEeCCCC-------c--eeeEeccc-cCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 568 EWNESEG-------T--IKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 568 ~wd~~~~-------~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
.|++..- + +.+.++.- ....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9987621 1 11222211 111345689999999999887 4567999999999999998765532 567899
Q ss_pred EcCCCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|+|-...+++- ..|.+++|....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccceeeeeec-cCCceEEEEeec
Confidence 99988777777 689999998754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=212.36 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=191.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-- 482 (1128)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|+ .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999999876 4789999999999999999 899999999999997 2
Q ss_pred -------CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 483 -------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+-++++.|..|.-+|+++...+.+-..+++|++.|.++++||+..+.....+. ....+.+++++|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence 23567899999999999998877666899999999999999998876666555 3457999999999999999
Q ss_pred eeeccCCCceEEEEeCCC----------------CceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++.||..|++|+.||.|+|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 884 88888876543 234556777876 579999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCC
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 98888632 337888888664
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=220.88 Aligned_cols=240 Identities=17% Similarity=0.276 Sum_probs=201.3
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeE-EEEecCCCeEEEEEecCCCeEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~-l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+.+.||...|..+++.++. .+++++.||++++|+-..++.+. ...+.+|.+-|.. +++.+..+. .+++|+.|.+|.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTII 84 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEE
Confidence 4589999999999977554 88999999999999987766543 2357788888877 888763332 699999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+|. ....++..+.||+..|+++.... ++ .+++||.|.++++|. .++....+.+|...|.+++.-|++ .+++++
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCC--cC-ceEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 999 88899999999999999998643 33 499999999999994 456667799999999999999988 677777
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
. |..|++|.- ++.+++|.+|.+ .|..+++-++ ..+++++.||.|+.|++ +|+.+..+. +|..-|+++..
T Consensus 159 a----DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~--ghtn~vYsis~ 227 (745)
T KOG0301|consen 159 A----DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMH--GHTNFVYSISM 227 (745)
T ss_pred C----cceeeeccC--Cchhhhhccchh-heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeee--ccceEEEEEEe
Confidence 4 999999974 889999999988 8999999876 46899999999999999 677666665 45557999998
Q ss_pred cCCCCEEEEEEcCCcEEEEEcc
Q 001190 638 SKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..++..+++++.|++++||+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888999999999999999864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=211.66 Aligned_cols=267 Identities=13% Similarity=0.225 Sum_probs=214.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+....+.|.+.|+.+.+-|....++|+++..+.|.|||..+-.-... ..+...+...+.||...=+.++|
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---------~~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---------ASGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---------ccccCCCceEEEeeccccccccc
Confidence 344556679999999999999999999999999999999876432211 00011233469999998888999
Q ss_pred ccC-CCEEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--CCCe
Q 001190 415 SPD-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRK 486 (1128)
Q Consensus 415 spd-g~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~--~g~~ 486 (1128)
++. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.||| . +.++
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence 994 45888999999999999986543 4555578899999999999997766 799999999999999 6 5666
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.....+|.++|+|++|.|.. +.+||+|+.|++|.+||++.... ...+..|...|..+.|||....+++.+. .|+.
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~r 340 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRR 340 (422)
T ss_pred cccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCc
Confidence 78888999999999999874 68999999999999999988654 4578899999999999998776554443 5999
Q ss_pred EEEEeCCCC--------------ceeeEeccccCCceeEEEEeCCCCEE-EEEECCCcEEEEECCC
Q 001190 566 LVEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 566 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~ 616 (1128)
+.+||+..- +++..-.||.. .|..+.|+|...++ +++++|+.+.||.+..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999998642 23355567776 78889999988764 5578999999999853
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=223.23 Aligned_cols=283 Identities=18% Similarity=0.214 Sum_probs=222.6
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
.|....+.++|.|+|..+++++.||.|++|+.......|. . +. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------------------t----i~--~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------------------T----ID--ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------------------h----hh--ccCceeEEEee--
Confidence 3888899999999999999999999999997543211000 0 00 04555666664
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
++.++++++ +++|.+|...+++.-..+..-.-++++++|+. +|+++|.|+.|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 555888887 89999999998876555555566899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC--CCCccEEEEcCC-CCEEEEEecCeEEEEecCCcccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--PTGDTRVQFNAD-QVRMLVVHETQLAIYDASKMERI 997 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~s~d-~~~l~~~~d~~i~v~d~~~~~~~ 997 (1128)
|.|+|.+.+||+.+-||.|++||++++....+...-...... ...+..++|+|+ |.+++.+.|+.|.+|+.......
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999999999999999999999999998876665433222221 256778999999 55566678999999999999988
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
..+..... ...+.+++|||.|+|||+++.||.|.|||.++.+. |.-...|.+++|.|+ ++-+
T Consensus 224 f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------------~~~~~~Vc~~aw~p~-~n~i 285 (933)
T KOG1274|consen 224 FKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----------------HEFKRAVCCEAWKPN-ANAI 285 (933)
T ss_pred eeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----------------ccccceeEEEecCCC-CCee
Confidence 88877654 44499999999999999999999999999998333 122235688999994 5555
Q ss_pred EEEECCCcEEEE
Q 001190 1078 AIGLTDGSVKVM 1089 (1128)
Q Consensus 1078 ~s~~~dg~i~iW 1089 (1128)
-.-..-|..-+|
T Consensus 286 t~~~~~g~~~~~ 297 (933)
T KOG1274|consen 286 TLITALGTLGVS 297 (933)
T ss_pred EEEeeccccccC
Confidence 444444544444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=190.61 Aligned_cols=304 Identities=15% Similarity=0.210 Sum_probs=230.1
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP- 416 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 416 (1128)
...-.|.+.|+++.+.|...+|+.+|+.||.|.+||++.-.......+ +.+ ..|. .....-.+|.-.|..+.|-|
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeee
Confidence 344469999999999997555889999999999999976542111000 000 0111 11223678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCC-eEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~-~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|...+.+++.|.+++|||.++-+.... | .-.+.|++-+++|-.. ..++++|..|-.|++.| .+|..-+.+.||.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~---F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVD---F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred cCceeecccccceEEEeecccceeeEE---e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 667888899999999999999665432 2 3456788889988543 33788899899999999 9999999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-Cceeeec--------------CCCCeEEEEEEcCCCCeEEEeeec
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~--------------~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+.|.++.|+|.. .-.|++|+.||.|++||++.. ++...+. .|.+.+..++|+.||.++++++.
T Consensus 189 ~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt- 266 (397)
T KOG4283|consen 189 DGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT- 266 (397)
T ss_pred CceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-
Confidence 999999999875 478999999999999999765 3333333 34457899999999999999986
Q ss_pred cCCCceEEEEeCCCCceeeEecc---ccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
+..+++|+...|+....-.+ |.+ ..+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..|.
T Consensus 267 ---d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~ 339 (397)
T KOG4283|consen 267 ---DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRIN 339 (397)
T ss_pred ---ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceee
Confidence 88999999988764322111 111 0111 22 3344445555567999999999999999998774 4899
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
|.++.|+=+...+|..|+.|..|..
T Consensus 340 c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 340 CAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-23 Score=192.36 Aligned_cols=252 Identities=17% Similarity=0.233 Sum_probs=201.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
.|++.|-.+...--|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 5888898888888898 57999999999999998765421 2234999999999999975 799
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCe--EEEecCCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFEGHEA 495 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~--~~~~~~h~~ 495 (1128)
.||+++.||.|.||.-++|+ ..+......|...|++++|.|.+-.+.|++++.||.|.|.+ .+|.- ......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999884 44445677999999999999998877999999999999998 33222 234467999
Q ss_pred CeEEEeccCCCC-c-----------cEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCC----CeEEEee
Q 001190 496 PVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG----SRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g----~~l~~~~ 557 (1128)
.|++++|.|..- | +.|++|+.|..|++|+.+...- ...+..|...|+.+++.|.- ..|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987521 2 5799999999999999877532 23478899999999999965 3677777
Q ss_pred eccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 558 TSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
+|+++.||..+.. .-..++...-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 231 ----qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 ----QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 6999999987632 11111111122378899999999999999999999999754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=210.50 Aligned_cols=273 Identities=12% Similarity=0.153 Sum_probs=203.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.|..++|-|||..+++.+ +..+.|||...|..+.. +++|.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 799999999999765543 56899999999998754 999999999999999999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~ 505 (1128)
.|+.|.+|+-+-...++ -.|.+.|.|+.|.|-.. .|+||+- ...-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999977644443 26999999999999988 6888874 45668984443332222 2345666666 5
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeeecC---CCCeEEEEEEcCCCC-----eEEEeeeccCCCceEEEEeCCCCcee
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~~~~i~~~~~s~~g~-----~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.||++++.|-.+|+|.+-+- +++....+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 68999999999999998754 3444444444 455899999999643 2333321 3334444432 3333
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..-+...- ...|+.+.++|.+++.||.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 32221111 3567889999999999999999999985 455555554433 3799999999999999999999999998
Q ss_pred ccc
Q 001190 658 NAI 660 (1128)
Q Consensus 658 ~~~ 660 (1128)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=204.25 Aligned_cols=248 Identities=14% Similarity=0.200 Sum_probs=197.7
Q ss_pred cccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+|.+..|.|+|. .+++++....++.||+...+...-+ .+.+ -....+....+|||
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~---------------------~~~g-~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK---------------------PPYG-VEEKSMERFEVSHD 314 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeecccccccccc---------------------CCCC-cccchhheeEecCC
Confidence 35688899999999 7888888889999987643321111 1111 02345778899999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--ee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR--IT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--V~ 919 (1128)
+++|+..+ .|.|.+....+++.+.+++ -.+.|..++|+. |++.|.+.+.+|.|++||+....++.++... +. -+
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gt 391 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGT 391 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeec-Ccccee
Confidence 99999988 8999999999999998887 567899999998 8888888889999999999999988888643 33 46
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 995 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~ 995 (1128)
+++.|+++.|||+|+..|.|.|||.++-.. ....++.....-. ..|+.++|++|++.|++++ ...+++..+.+..
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 778889999999999999999999765211 0111121111111 6799999999999999875 6789999999999
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
....|......-+.|+|++|||.|.|+|.|..+|.+.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999888876667889999999999999999999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=192.93 Aligned_cols=272 Identities=16% Similarity=0.107 Sum_probs=210.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999874332 336999999999998765 89999999999999666
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----Cc
Confidence 6667778899999999987643 579999999999999998744444444333 6777765 4567777663 88
Q ss_pred eEEEEeCCCCceee-EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCC-------CCCc
Q 001190 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1128)
.+.+||+++..... .....-+..+.++++-|++.-.++++-||.|.+=.++.. .....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865433 222222336889999999889999999999998777665 23333443322 2268
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
++++|+|-...+++|+.||.|.+||+.+.++ +..+... ...|.+++|+.+|..|+.+.+.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~~~-----~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLAKY-----ETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhh-hhhccCC-----CCceEEEEeccCCCeEEEEech
Confidence 9999999989999999999999999988743 3333332 3358899999999999866543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=207.18 Aligned_cols=314 Identities=15% Similarity=0.214 Sum_probs=230.3
Q ss_pred Eecc-CcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEE
Q 001190 514 TAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 514 ~~~d-g~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1128)
++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. ....+.+|.+..........--. +++.++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~P-g~v~al 87 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLP-GPVHAL 87 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhcccc-cceeee
Confidence 3444 4589999999999888876522 1111111 23357777664 46689999987665544222222 378999
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCC
Q 001190 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1128)
Q Consensus 592 ~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (1128)
+-+|+|.+++.|+..|.|++|.+.+|.++..+. .|...|+|+.|+-||.++++|+.||.|.+|.+.+-.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv--------- 156 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV--------- 156 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHH--hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec---------
Confidence 999999999999999999999999999999885 556799999999999999999999999999875421
Q ss_pred ccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCc
Q 001190 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (1128)
Q Consensus 672 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (1128)
+++.... -..+.+|
T Consensus 157 --------------~a~~~~~------------------------------------------~~p~~~f---------- 170 (476)
T KOG0646|consen 157 --------------SADNDHS------------------------------------------VKPLHIF---------- 170 (476)
T ss_pred --------------ccccCCC------------------------------------------ccceeee----------
Confidence 1100000 0111122
Q ss_pred eeEEEecCCCCCcccEEEEEEecC--cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCC
Q 001190 752 CRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1128)
Q Consensus 752 ~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1128)
..|.-.|+.+...+. ..++++++.|.++++||+.. |.++....
T Consensus 171 ---------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~---- 215 (476)
T KOG0646|consen 171 ---------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT---- 215 (476)
T ss_pred ---------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----
Confidence 227788888877765 45799999999999997653 33322222
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----------------eEEEEeeCCCC--CeeEEEEcCCCCCEEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----------------KVMTTFMSPPP--ASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----------------~~~~~~~~~~~--~v~~l~~s~~d~~~las 890 (1128)
.+..+.+++++|-++.+..|. +|.|.+.++... ..+..+.+|.+ .|+|++++- ||.+|++
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLS 294 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEe
Confidence 678899999999999999997 899888776432 34556778988 899999999 9999999
Q ss_pred EeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEE-EcCCCcEEEEECC
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS-SGADAQLCVWSID 945 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s-~~~Dg~i~iwd~~ 945 (1128)
|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+-... -.....+-.|++.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999999999999999999999877899999999665332222 2233345555544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=203.42 Aligned_cols=287 Identities=12% Similarity=0.213 Sum_probs=232.9
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la 422 (1128)
.++|++|.|+|.-. +|.+|+.|++++||.++....... + .+.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------q--S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------Q--SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------e--eeeeccCccceeeecCCCceEEE
Confidence 46799999999988 888899999999999975433211 1 1222456999999999999 899
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+++.......||+.+++..+. ..+.++. ..+.....+++++ +|+..+..|.|.+-. .+++.+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999999875432 2344554 4678889999999 899999999999999 8888888876 56789999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC------
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~------ 573 (1128)
+|+ .+++.|++++.+|.|.+||++...+...+...+. .-++++.|++|.++++|+ ..|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccCC
Confidence 996 4778999999999999999999988887776655 457888999999999998 489999999653
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecC-CCCCCcceEEEcCCCCEEEEEEcC
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+++..+..... .|+.+.|+++.+.|+.+| .+..+++-.+.+......++.. ...+.|+|++|+|.+.++|+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655554 788999999999998887 5778999988877665555433 234468999999999999999999
Q ss_pred CcEEEEEcc
Q 001190 651 NGFKILANA 659 (1128)
Q Consensus 651 g~i~iw~~~ 659 (1128)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=199.95 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=223.1
Q ss_pred CCCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
+...|++++|+|... .++|+|...|.|-+||+.+.+.... ....+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999865 7999999999999999974443322 1234888999999999999 4568
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~ 498 (1128)
+.+.+.||+|+.-|++++.. ..+..+..-...+.++.|+.+.. .++.+..=|...+|| ..|.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999998643 22223333556788899999888 577777777999999 55666777888999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC--
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-- 572 (1128)
+++++|... .+++|++.|++.+|||++...... ....|...|.+..|||+|-.|++.+ .|..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec----cCCceEEeecccc
Confidence 999998754 799999999999999998754433 3456778999999999988888877 49999999984
Q ss_pred --CCceeeEeccccC--C--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce-EEEcCCCC-EE
Q 001190 573 --EGTIKRTYAGFRK--K--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGN-LL 644 (1128)
Q Consensus 573 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~-~l 644 (1128)
.-.+..++.-... . ...-..|.|+..++++|-.-..|-|+|-..++.+..+...... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333321111 0 1223679999999999998889999999999988776544322 3444 47999877 44
Q ss_pred EEEEcCCcEEEEEcc
Q 001190 645 AVTTADNGFKILANA 659 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~ 659 (1128)
+-++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=206.08 Aligned_cols=204 Identities=17% Similarity=0.218 Sum_probs=152.5
Q ss_pred EEEeccCCCeEEEE-e-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEecccceeeeccc
Q 001190 836 CIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 836 ~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~ 912 (1128)
.++++|+++.++++ . ++.|++||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 46677787766554 3 67889999888877776653 23468899999 899998888765 56788998887765543
Q ss_pred ccccCeeEEEEcCCCCEEEE-EcCCCcEEEEECCCCcccceeEEeecCCC-CCCCccEEEEcCCCCEEEEE--ecCeEEE
Q 001190 913 GHQKRITGLAFSTSLNILVS-SGADAQLCVWSIDTWEKRKSVTIHIPAGK-TPTGDTRVQFNADQVRMLVV--HETQLAI 988 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s-~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~--~d~~i~v 988 (1128)
. ...+.+++|++++++|+. +..++.|++||+.+++....+.......+ .......++|+|++++++++ .++.+.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 235678999999998854 45689999999999876555443321111 11234578999999986653 4678999
Q ss_pred EecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEecCCCceEEEeC
Q 001190 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
||..+++.+..+.. ...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+..+.
T Consensus 234 ~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 234 VDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99998877655432 4578899999999999886 469999999999999988887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=207.16 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=199.3
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~~~ 437 (1128)
++++++.|+.|.+||+.+++.+.. +.+|. .+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 778999999999999998876542 33343 46789999999987 5667889999999999
Q ss_pred CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec
Q 001190 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1128)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 516 (1128)
++.+.. +..+.. +..++|+|+++. ++++++.|+.|++|| .+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~~---~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIGT---LPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEEe---ccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 876543 333433 567899999984 345566789999999 66777666653 33467788866 6678888887
Q ss_pred cC-cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC------Ccee
Q 001190 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (1128)
Q Consensus 517 dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 589 (1128)
++ .+.+||.++........ ....+..++|+++|+++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987665544332 2334678999999998876542 478899999999988776643211 1123
Q ss_pred EEEEeCCCCEEEEE-ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccC
Q 001190 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 590 ~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 661 (1128)
.++|+|++++++++ +.++.+.+||..+++.+..+.. ++ .+.+++|+|+|++|+++. .++.|.+||+.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 57899999986554 4577899999999887765532 22 578999999999998874 5899999999987
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=224.80 Aligned_cols=235 Identities=17% Similarity=0.330 Sum_probs=213.2
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44588999999987788999999999999999987765554 4789999999999999998 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++.++++.||...+.++.|+| -+.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~--- 173 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG--- 173 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---
Confidence 99999999999999999999988 568999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.|..+++||...|+....|..|.. .+..+.|+|..-.++.||.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 174 -ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 174 -EDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred -Ccceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 379999999999999999999987 7888999999888999999999999999999888776644 457999999999
Q ss_pred CCEEEEEEcC
Q 001190 641 GNLLAVTTAD 650 (1128)
Q Consensus 641 ~~~l~~~~~d 650 (1128)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=189.31 Aligned_cols=250 Identities=14% Similarity=0.243 Sum_probs=190.4
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 5889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCC---eEEEEEEcCCCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGH---WCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~---~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
+.++ ...+|+.+.|+|......+++--.. .-.+-++........- ...+. ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 5779999999998776555554333 2344444432222111 11111 2233468899999999984 8
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe-------ee--EEEecCCCCCCcce
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-------IL--TSTDAEGGLPNLPR 634 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-------~~--~~~~~~~~~~~v~~ 634 (1128)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|+.|+.|+.+.-. +. +.++.--...+-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999999999998887664478889999999999999999999999986311 11 11110001113468
Q ss_pred EEEcCCCCEEEEEEc-CCcEEEEEcccCccccccccC
Q 001190 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
++|+.+|.+++.++. ...++||....| .+++.+.+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG 290 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHG 290 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecC
Confidence 899999999988775 567999998777 55555554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=199.13 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=201.5
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcc-------eeceeecccccceeEEEEecCCCeEEEEEecC
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~ 473 (1128)
...|.+.|..+..-|... .+|+.+..+.|.|||...-... +.-..+.+|.+.-++++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 445999999999999655 5666788899999998643222 222368899998889999998666 7999999
Q ss_pred CCeEEEEec--CCC------eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC--CCCceeeecCCCCeEEE
Q 001190 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1128)
Q Consensus 474 d~~i~vWd~--~g~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~ 543 (1128)
|++|++||. .+. +...+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 3467889999999999998754 689999999999999999 45556677888999999
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeee-
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL- 620 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~- 620 (1128)
++|+|-+.++++.+. .|++|.+||+++. +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999997665554432 4999999999985 47788999987 89999999976 56777889999999998643222
Q ss_pred -----------EEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcEEEEEccc
Q 001190 621 -----------TSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (1128)
Q Consensus 621 -----------~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~ 660 (1128)
..+...||...|..+.|+|+.. .|++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2244557778899999999765 567788899999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=185.39 Aligned_cols=246 Identities=17% Similarity=0.271 Sum_probs=184.1
Q ss_pred CCCcccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.-.|..+.|-|-.. .+.+++-|.++++||..+-.. .+ .+ ..++.|.+-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~-------------a~----------~F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE-------------AV----------DF---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeeccccee-------------eE----------Ee---ecCceeehhhc
Confidence 34778899999988554 455555699999998653211 00 01 14566777777
Q ss_pred ccCC---CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eee------
Q 001190 840 SKND---SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVK------ 908 (1128)
Q Consensus 840 s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~------ 908 (1128)
||=. -++|+|. +-.|++.|+.+|.+-.++.+|.+.|.++.|+|...-+||+|+.||.|++||++.. -+.
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 7733 3566666 5679999999999999999999999999999977778899999999999999753 122
Q ss_pred --------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 909 --------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 909 --------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
+.-.+|.+.|.+++|+.|+.++++++.|..+++|+..+|+....................+. +.+...++.
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~ 310 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL 310 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEE
Confidence 22346888999999999999999999999999999998875433222221111111111123 333333332
Q ss_pred -EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 981 -VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 981 -~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
-.++.+.++.+-++..++.+..| ...|.|.+|-||-+...+|..|+.|..|-.
T Consensus 311 ~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 311 FPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 34799999999999999999887 799999999999999999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=205.02 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=209.5
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeE
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 854 (1128)
...|+.+.++|.|.++|.....+. ++...+. ... .|...|..+.+-|....|++++ |.++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk--~~~--aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLK--KPL--AHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhhhc--ccc--cccceeEeeccCCCceeEEEccCCcee
Confidence 345677778999999986543221 1111111 111 3999999999999666777777 8889
Q ss_pred EEEECCCceEEEE--eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--------------------------
Q 001190 855 SLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-------------------------- 906 (1128)
Q Consensus 855 ~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------- 906 (1128)
++||+++.+++.. +.+|.+.|.+++|.+.+...+++|+.||.|.|||+....
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999986432
Q ss_pred -eeecccccccCeeE---EEEcCCCCEEEEEcC-CCcEEEEECCCCccccee---EEeecCCC--CCCCccEEEEcCCCC
Q 001190 907 -VKSKLKGHQKRITG---LAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSV---TIHIPAGK--TPTGDTRVQFNADQV 976 (1128)
Q Consensus 907 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~~~~~~---~~~~~~~~--~~~~v~~v~~s~d~~ 976 (1128)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .......+ ....+.++..+..|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 11122345556666 666778899999888 999999999875432111 11111111 114566777777788
Q ss_pred EEEE-EecCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC
Q 001190 977 RMLV-VHETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053 (1128)
Q Consensus 977 ~l~~-~~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1053 (1128)
+|++ +.|+.|++|++..... +..+..+.. ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------- 356 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------- 356 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence 8776 6799999999986543 333333221 2222334578999999999999999999999877644333
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1054 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
-+|...|++++|.|..-.-++++++|..+++|++..+
T Consensus 357 ----~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 ----LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3677888999999987777999999999999999765
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=197.82 Aligned_cols=280 Identities=14% Similarity=0.219 Sum_probs=214.1
Q ss_pred cCCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc
Q 001190 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1128)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1128)
++.++|..+...+. |++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecc
Confidence 45666777766664 999999999999998 88999999999999999999986411 245
Q ss_pred ceEEEEEccCCC--EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEe----cCCCeEEEEe
Q 001190 408 SVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE 481 (1128)
Q Consensus 408 ~V~~l~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~----s~d~~i~vWd 481 (1128)
.|.||+|+|.+. .||++-.. .+.|-+..-|..+....+ .. .|+++ ..|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t----------------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPT----------------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcch----------------hh--hhhcCCCccCCcccceeec
Confidence 899999999765 45544433 366666554433221000 01 12222 3356778887
Q ss_pred -cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 482 -LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 482 -~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
.+.. -++....|...|..+.||. .|.||++...+ ..|.|.++.....+.-+....+.|.++.|.|...++
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 3211 1344556889999999987 56799998664 578899988777777777778889999999999998
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC-eeeEEEecCCCCCCc
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNL 632 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v 632 (1128)
++++ ...|++||+....++..+..... .+..++++|.|..|+.|+.|+.+..+|+.-. ++.+.+..|.. .+
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--av 653 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AV 653 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hh
Confidence 8886 67899999999888887776655 7889999999999999999999999999755 45666665544 79
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
..|+|++.-.++++|+.||++.|+-.
T Consensus 654 r~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 654 RSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhccccceeeeecCCCcEEEEee
Confidence 99999999999999999999998853
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=201.70 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=212.8
Q ss_pred EEEe--CCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 350 MDFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 350 v~fs--pdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
+.|+ |..+++||.+-.||.|.++|......... ..+......|.+.|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 4454 34567999999999999999865432210 01112356799999999999977789999999
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCe-------------------
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------- 486 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~------------------- 486 (1128)
.++++||+++++..... .+.||.+.|.+++|.++... .+++|+.||.|.||| .++..
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876543 47799999999999999887 899999999999999 33310
Q ss_pred -------EEEecCCCCCeE----EEeccCCCCccEEEEEec-cCcEEEEecCCCCceee--------ecCC---CCeEEE
Q 001190 487 -------LFNFEGHEAPVY----SICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1128)
Q Consensus 487 -------~~~~~~h~~~v~----~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~--------~~~~---~~~i~~ 543 (1128)
+.....|...|. .+.| .|...|++++. |+.|+|||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 111223444443 3443 25578998887 99999999987654432 2222 336788
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeE-EEEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
+.....|.+|++.+. |+.|++|++.+- .++..+.++....+.. -..+|++.++++|+.|...++|.+.+-+.-
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888999888775 999999999864 3455566654433222 357899999999999999999999876543
Q ss_pred EEEecCCCCCCcceEEEcCC-CCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+ ..+|...|++++|.|. -.-++++++|..+++|++..+
T Consensus 353 ~~~-l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PAL-LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 332 2255668999999883 334667799999999999766
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=193.72 Aligned_cols=466 Identities=15% Similarity=0.158 Sum_probs=292.9
Q ss_pred ceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce
Q 001190 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 531 (1128)
.|..++|-|||.+++++. +..+.+|| .+|..+.++++|.+.|++++|+. ||+.+++|+.|..|.+|.-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG-~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-I 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEecccccc-e
Confidence 799999999999744443 45799999 99999999999999999999965 88999999999999999654322 2
Q ss_pred eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
.. -.|+..|.|+.|+|-...+++++. ...-+|........ ..+. ...+.+++|..||.+++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~-K~ks--s~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVS-KHKS--SSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHH-hhhh--heeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 347889999999999999999974 34667876543322 1111 125778999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCC-----EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeee
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-----LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1128)
-+....+.+..-...+...+|.+++|+|... .+++.....++.++.+...
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------------------------- 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------------------------- 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------------------------
Confidence 8764444444434445567899999999532 3444444444444433211
Q ss_pred cccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCccc
Q 001190 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1128)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1128)
.+ +.-+. -.-.
T Consensus 214 ----~I---------------------------------------------------------gk~r~--------L~Fd 224 (1081)
T KOG1538|consen 214 ----QI---------------------------------------------------------GKDRA--------LNFD 224 (1081)
T ss_pred ----ee---------------------------------------------------------ccccc--------CCCC
Confidence 10 00000 0112
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
..++.+.++|.+++.|+.|+.+.+|.-. |..+. .+. .....|..++..|+++++
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLG-Tvg--~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLG-TVG--EQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEe-ecc--ccceeEEEEEEccCCceE
Confidence 2578899999999999999999998532 11111 111 167789999999999999
Q ss_pred EEEe-CCeEEEEECCCceEEEEe-------------------eCCCCCe------eEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTF-------------------MSPPPAS------TFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~-------------------~~~~~~v------~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
+.|. ||+|..|++......... .+....| ..+++- + ..||+-- .-.|.||
T Consensus 279 ~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY--r-nrLAVQL-peki~iY 354 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY--R-NRLAVQL-PEKILIY 354 (1081)
T ss_pred EEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--h-hhheecc-cceEEEE
Confidence 9998 999999987532211100 0111111 112221 1 2344433 3357888
Q ss_pred ecccceeeec-ccccccCeeEEEEc---CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEE--cCC
Q 001190 901 NVRVDEVKSK-LKGHQKRITGLAFS---TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF--NAD 974 (1128)
Q Consensus 901 d~~~~~~~~~-l~~h~~~V~~l~~s---~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~d 974 (1128)
.+.+++...- ++....-+..+.+| -.++.++. +.+..+.-+|...-++.....- +-++.+.. -|-
T Consensus 355 el~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~--------S~iRYikV~GGP~ 425 (1081)
T KOG1538|consen 355 ELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQME--------SLIRYIKVIGGPP 425 (1081)
T ss_pred eccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHH--------HHHHhhhhhcCCC
Confidence 8776543211 00000001111111 12334443 3466777777765332221110 11111111 122
Q ss_pred C-CEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCC
Q 001190 975 Q-VRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 975 ~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
| .-|++| .+|.|.-.=+.+.-++..... ...|.|+..+..-+.||+..+.++..++|+.+++.+..-.
T Consensus 426 gREgL~vGlknGqV~kiF~dN~~PiLl~~~----~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp------ 495 (1081)
T KOG1538|consen 426 GREGLLVGLKNGQVLKIFVDNLFPILLLKQ----ATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP------ 495 (1081)
T ss_pred CcceeEEEecCCcEEEEEecCCchhheecc----cceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecC------
Confidence 2 334444 366655444444444433332 6789999999999999999999999999999999887655
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECCCcEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
.+.+++|+...+.+|+-.+. |.+.
T Consensus 496 ----------g~nSV~wNT~~E~MlcfT~~-g~L~ 519 (1081)
T KOG1538|consen 496 ----------GANSVAWNTQCEDMLCFTGG-GYLN 519 (1081)
T ss_pred ----------CCceEEeeccccceEEEecC-CceE
Confidence 12567888776676655544 4433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=197.80 Aligned_cols=324 Identities=11% Similarity=0.158 Sum_probs=235.4
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
+..++.||++.|+||...|.|.+||+|+.||+|+||.+.+|.+++... -.+.|.+++|+|.+...+|+.+-.+ .+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 445789999999999999999999999999999999999999998542 3447999999999887455555444 46
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEE----eccCcEEEEecCCC----CceeeecCCCCeEEEEEEcC
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~~wd~~~~----~~~~~~~~~~~~i~~~~~s~ 548 (1128)
.|-+ .-|..+..-.. ...|+++ ..++.+..|.-... ........+...|..+.|..
T Consensus 467 ~ivnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EEeCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 6766 54422211100 0111111 23456777854321 12334556778999999999
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
+|.+|++...+ ++...|.|.++...+...-|....+ .+.++.|+|...+|++++. ..|+|||+...++++.+...
T Consensus 532 kGDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 532 KGDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred CCceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence 99999988753 3567899999988777766665554 7889999999999988875 58999999988777766533
Q ss_pred CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCC
Q 001190 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (1128)
...|..++++|.|..|+.|+.|+.+..+|+.-+....+.+..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-------------------------------------- 648 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-------------------------------------- 648 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--------------------------------------
Confidence 336899999999999999999999999998766444444332
Q ss_pred CCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecccee
Q 001190 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1128)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 788 (1128)
|...+++++|++.-..+++++.||++
T Consensus 649 ------------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 649 ------------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred ------------------------------------------------------hhhhhhhhhhccccceeeeecCCCcE
Confidence 66677888888888888888888888
Q ss_pred EeeeccccCCCCCCceeeeecccee-ccCCCccc--cccccCCCCC----CCeeEEEeccCCCeEEEEe-CCeEEEE
Q 001190 789 KLWKWHRNEQNPSGKATASAVPQHW-LPSSGLLM--ANDVAGVNLE----EAVPCIALSKNDSYVMSAT-GGKISLF 857 (1128)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~----~~v~~~~~s~dg~~la~~~-dg~i~vw 857 (1128)
.|+--. +| |+....++ -..+.+ |. ..|..+.|+|..-+|.+++ ||+|++|
T Consensus 675 ~Vfhg~-----------------VY~Dl~qnpliVPlK~L~g--H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGM-----------------VYNDLLQNPLIVPLKRLRG--HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeee-----------------eehhhhcCCceEeeeeccC--ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 887411 11 11111111 011222 43 3488999999999999998 8999998
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=212.51 Aligned_cols=233 Identities=10% Similarity=0.187 Sum_probs=208.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. -+.+|+.+|.|+.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence 3888899999877777 88999999999999986544433 288999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++|+.+|+|++||++.++.++ +|.||...+..++|+|-+. +.++|+.|+.+++|| ....+.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 6889999999999999999 789999999999999 7688999999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
.|.| +|.+++++++|.++++||+..++....+..|...+.++.|.|..-+++.|+. |..+++||+++.+.+...
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSG 234 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeecc
Confidence 9976 7899999999999999999999988899999999999999999888888874 999999999998888887
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECC
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
..... .|.+..|++++..+++|...
T Consensus 235 ~~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccC-CceeeeecCCceeeecCchh
Confidence 77655 79999999999988887654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-20 Score=183.81 Aligned_cols=306 Identities=16% Similarity=0.204 Sum_probs=219.3
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
+..+...+|..+.|.+++...+|||+.|..|+||.++.+..-... ........|..|+..|+++.|+|+|
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 334456789999999987767899999999999999765543210 0111224588999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcc--------C-----CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 419 NYVGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|.++++|| ..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999876 2 112233446789999999999999999 899999999999999 999
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--------C-----------CC----CeE
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--------A-----------PG----HWC 541 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------~-----------~~----~~i 541 (1128)
..+..+.+|...|..++|.| -++++++-+.|...+.+.+.......... . |. ...
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999976 45889998888877666654433222111 0 01 123
Q ss_pred EEEEEcCCCCeEEEeeeccCC-----CceEEEEeCCC-CceeeEeccccCCceeEEEEeC------------------CC
Q 001190 542 TTMLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDT------------------TQ 597 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~ 597 (1128)
..++|+|||.++++...--.- -+..++++-.. .++...+.+... ....+.|+| -+
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccc
Confidence 567899999998875421100 12334444332 223334444333 333333332 11
Q ss_pred CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
-.++.+ ....|++||.++-.++..... -|...++.++|++||..++..+.||...+..++..
T Consensus 313 lvfaiA-t~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 313 LVFAIA-TKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eEEEEe-ecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 233344 456899999999888777654 34568999999999999999999999888776654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=207.83 Aligned_cols=247 Identities=13% Similarity=0.223 Sum_probs=195.1
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~ 425 (1128)
+..|.|+.--..+|||++..|.|.+||+... ...+ +...+..|+..|.++.|++ .-.+|++|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--~rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSGS 153 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS--IRNK--------------LLTVFNEHERSANKLDFHSTEPNILISGS 153 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc--ccch--------------hhhHhhhhccceeeeeeccCCccEEEecC
Confidence 4566777554558999999999999999762 1110 1124888999999999998 456888999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.||+|++||+...+-.. ++.+....|+++.|+|-..+ .++++.+.|.+++|| ...++...+..|.++|.|+.|+
T Consensus 154 QDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH 229 (839)
T ss_pred CCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec
Confidence 99999999999876544 56788899999999996555 899999999999999 5667788999999999999999
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeE-EEeeeccCCCceEEEEeCCCCc-eeeEe
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l-~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1128)
| ++.+|+||+.|++|+|||+........... ...++.++.|-|+..+. ++++. ..|..|+|||++..- +..++
T Consensus 230 P--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 230 P--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred C--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeeccccccceee
Confidence 8 678999999999999999986655544433 34589999999987654 44443 258899999998765 45667
Q ss_pred ccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCe
Q 001190 581 AGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
..|.. .++.++|.. |...+.+++.||.|..-..+++.
T Consensus 306 ~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 306 LEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 77776 888888865 44678889999988766555543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=175.62 Aligned_cols=255 Identities=11% Similarity=0.157 Sum_probs=192.5
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC-cceeceeecccccceeEEEEecC--CCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i 477 (1128)
+..+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+- |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 466899999999999999999999999999999965432 23333357789999999999764 67 89999999999
Q ss_pred EEEec-CC---------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee------eec------
Q 001190 478 KVWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV------DYD------ 535 (1128)
Q Consensus 478 ~vWd~-~g---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~------~~~------ 535 (1128)
.||.. .. ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 11 123456667788999999999989999999999999999764432221 111
Q ss_pred -CCCCeEEEEEEcCC---CCeEEEeeec-cCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCC----CEEEE
Q 001190 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1128)
Q Consensus 536 -~~~~~i~~~~~s~~---g~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 602 (1128)
.+..+..|+.|+|. ..+|+.++.. ...-+.++||...... .+.++.+|.. +|..++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23446788999874 3466766531 0122477888765432 4556777776 89999999964 46888
Q ss_pred EECCCcEEEEECCCCe-----------------eeEEE-ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 603 ~s~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++.|| |+||++.... .+..+ ...+|...|..+.|+-.|..|++.++||.|++|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 12222 244566789999999999999999999999999764
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=215.70 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=226.9
Q ss_pred EEEEEEeCCCCcEEEEeec----------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
-..++|||++..++|+|.. +.++.||.+.-..... .+...--.........++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------------cccccccccccccceeeeecc
Confidence 3467899999877888743 3345555443211110 000000112356788999999
Q ss_pred CCCE----EEEEeCCCeEEEEEccC---CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 417 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.... +|++|+.||.|.||| ..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444445567889999999999998776 899999999999999 4433333
Q ss_pred Eec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 489 NFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 489 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
... ...+.|.+++|... ..++|++++.+|++.|||++..+.+..+..+.. .+..++|+|++..-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 332 24567999999754 567999999999999999999877777666554 5789999999875544444667788
Q ss_pred eEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC
Q 001190 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1128)
Q Consensus 565 ~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 642 (1128)
.|.+||++.. ..++++++|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|...
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999998864 56778888887 78889999876 7888999999999999999999999886443 789999999655
Q ss_pred -EEEEEEcCCcEEEEEcccCc
Q 001190 643 -LLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 643 -~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.++.++.||.|.|+.+....
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 88899999999999987763
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-19 Score=171.70 Aligned_cols=253 Identities=13% Similarity=0.210 Sum_probs=189.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.+....-. . .....+.|.+.|..+.|-+ =|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------S--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------E--------EeeeEEecCCcEEEEEecCccccc
Confidence 58899999999999995 6999999999999975543221 1 1123667999999999965 599
Q ss_pred EEEEEeCCCeEEEEEccC------CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-----
Q 001190 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----- 487 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~----- 487 (1128)
.+|+++.|+++.||.-.. |..-....++......|+++.|.|.-..+.+++++.||++|||+ .+-..+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997631 11122233566778899999999987777999999999999999 433222
Q ss_pred -EEec-------CCCCCeEEEeccCCCC-ccEEEEEecc-----CcEEEEecCCCCcee----eecCCCCeEEEEEEcCC
Q 001190 488 -FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 488 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~ 549 (1128)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||.......+. ++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 3556677888875432 2467777655 589999877665332 56678889999999996
Q ss_pred C----CeEEEeeeccCCCceEEEEeCCCC--------------------ceeeEeccccCCceeEEEEeCCCCEEEEEEC
Q 001190 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1128)
Q Consensus 550 g----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 605 (1128)
- ..|++++ +|| |+||.+... +.+..+.+|.. .|..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 3566666 477 999998731 23344566665 8999999999999999999
Q ss_pred CCcEEEEECCC
Q 001190 606 DSQIKFWDMDN 616 (1128)
Q Consensus 606 dg~i~iwd~~~ 616 (1128)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999998653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=186.87 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=190.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceecee------------------ecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ------------------IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
.|+|+|.|+.|..|.|||+.-...+.+..+ -.+|+..|.+++|..+-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 378999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+|| .+|++...+..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999 9999999999999999999999874 57999999999999999985332222222345688999999877666666
Q ss_pred eccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 558 TSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
. .+|.|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++............-..+...|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 5 5999999999975 89999999998 89999998765 56778999999999998765543322221222345677
Q ss_pred EEcCCC-CEEEEEEcCCcEEEEEcccCccccc
Q 001190 636 RFSKEG-NLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 636 ~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
++.|+- -.++.|+..+.++|||+.+.....+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 788854 4677888888899999988744333
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=188.34 Aligned_cols=294 Identities=13% Similarity=0.218 Sum_probs=215.4
Q ss_pred CCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccc
Q 001190 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1128)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (1128)
+....+++||+........+...+ ....+.++.|...... ++..+.|..+++|.-...
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--------------- 67 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQT------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--------------- 67 (673)
T ss_pred ccCCceEEeecccccCccccccCC------CCCcceeeeccccceEEEeecCCceeEEEecccCC---------------
Confidence 333788999987654443332221 2223888888877742 334456889999863321
Q ss_pred eeccCCCcc-ccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEE
Q 001190 812 HWLPSSGLL-MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 812 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la 889 (1128)
++.+ +.... ....-.|++......|+++|+ .+.|+|||+....+.+.+++|...|+++.|.- ...+||
T Consensus 68 -----~~~Vp~~~k~----~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiA 137 (673)
T KOG4378|consen 68 -----TPEVPRVRKL----TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIA 137 (673)
T ss_pred -----CCccceeecc----ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeE
Confidence 1110 00011 122344555555558888888 89999999998888889999999999999998 788999
Q ss_pred EEeCCCcEEEEecccceeeeccccccc-CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 890 IGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+++..|.|.|-.+.++.....|...++ .|.-+.|++..+ +|.+++.+|.|.+||+...... .+....| ..+..
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~~~~H-sAP~~ 212 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHASEAH-SAPCR 212 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cchhhhc-cCCcC
Confidence 999999999999999988878875534 455899999877 5567899999999999885432 2222223 38889
Q ss_pred EEEEcCCCCEEEE--EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 968 RVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 968 ~v~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
.|+|+|....|++ |-|..|.+||+...+....+.. ..+...++|+++|.+|+.|...|.|..||+.....-...
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 9999998877766 4599999999998877777665 688999999999999999999999999999865432222
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
. +.|...|++++|-|. + .+++
T Consensus 289 ~-----------sah~~sVt~vafq~s-~-tvlt 309 (673)
T KOG4378|consen 289 R-----------SAHDASVTRVAFQPS-P-TVLT 309 (673)
T ss_pred e-----------eecccceeEEEeeec-c-eeee
Confidence 2 367777899999984 3 4443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=197.99 Aligned_cols=296 Identities=12% Similarity=0.150 Sum_probs=222.5
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 422 (1128)
+....++...++-..++..| .....|+.+....... ++.+.. ..-..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~----------k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRF----------KTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeec----------ccccceeeehhhcccccchhhhhe
Confidence 34567777778876554444 3467777765543221 111100 00001122455677875 678999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+++.+|.|.+||+.....-+....|..|...|++++|++-..+ +|+|||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333368899999999999998777 899999999999999 88888888888899999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 6799999999999999998654 45678899999999999999999999985 999999999987766666
Q ss_pred ccccCCceeEEEEeCCCCE-EEEEE--CCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~s--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i 655 (1128)
.-+...++.++.|-|+..+ |++++ .|-.|+|||+...- +..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 6666668999999998754 55554 68899999997543 34445443 44788899966 5667889999998876
Q ss_pred EEcccC
Q 001190 656 LANAIG 661 (1128)
Q Consensus 656 w~~~~~ 661 (1128)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=173.57 Aligned_cols=300 Identities=13% Similarity=0.203 Sum_probs=206.2
Q ss_pred CCCcccEEEEEEec----CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 761 TDTSSKVVRLLYTN----SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
++|..+|.+++|.+ +...+++......+.+|...... +..+........+++....
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence 44778889998873 33344444455577888765321 0000001111136677777
Q ss_pred EEeccCC----CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 837 IALSKND----SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 837 ~~~s~dg----~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
++|+-|- -++|.++ -|.|+|.|+.++++...+.+|...|..+.+.|.+.+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 8887643 3666666 7999999999999999999999999999999988899999999999999999999998775
Q ss_pred ---cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEe------------------e-----cCCCCCCC
Q 001190 912 ---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH------------------I-----PAGKTPTG 965 (1128)
Q Consensus 912 ---~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~------------------~-----~~~~~~~~ 965 (1128)
.||.+.|.++.|+.+|.+++|+|.|.+|++|++...+-...+... . .+.|. ..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr-ny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR-NY 253 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc-ch
Confidence 679999999999999999999999999999999843221111110 0 00111 23
Q ss_pred ccEEEEcCCCCEEEE-EecCeEEEEecC-CcccccccccCC----------CCCCCeEEEEEe--eCCCEEEEEecCCcE
Q 001190 966 DTRVQFNADQVRMLV-VHETQLAIYDAS-KMERIRQWTPQD----------ALSAPISCAVYS--CNSQLVFATFCDGNI 1031 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~-~~d~~i~v~d~~-~~~~~~~~~~~~----------~h~~~v~~l~~s--~dg~~l~t~~~dg~i 1031 (1128)
|-++.|- |.++++ +.++.|..|... -.+.+....... .....|+-+.|+ +-++.||.|...|.|
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 3333333 345565 448899999872 222222111110 114456666655 457899999999999
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++||++..+........ .+.....|.-.+|+. |+.+|+...+|++|.-||.-
T Consensus 332 ~vwdL~~~ep~~~ttl~--------~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLT--------HSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEE--------eccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 99999987763211100 112334567788888 79999999999999999854
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-16 Score=182.72 Aligned_cols=290 Identities=27% Similarity=0.438 Sum_probs=220.4
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-eecccccccccccccCccccceeccCCC-cceEEEEE-c
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 415 (1128)
....|...|.++.|.+++. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 4456999999999999998 67778889999999998876 3221 33322 47777777 8
Q ss_pred cCCC-EEEEEeC-CCeEEEEEccC-CCcceeceeecccccceeEEEEecCCCeEEEEEecC-CCeEEEEe-cCCCeEEEe
Q 001190 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 416 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd-~~g~~~~~~ 490 (1128)
+++. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999987 44333 5779999999999999999 6788875 99999999 668889999
Q ss_pred cCCCCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++ .++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS----SDGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec----CCCcEEE
Confidence 99999999999984 555 55555999999999887555555 466666654 348999997777666 4999999
Q ss_pred EeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987665 44444554 47888999998889999888899999999888776666522223257788883332455555
Q ss_pred -EcCCcEEEEEcccC
Q 001190 648 -TADNGFKILANAIG 661 (1128)
Q Consensus 648 -~~dg~i~iw~~~~~ 661 (1128)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56677777776543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-16 Score=184.92 Aligned_cols=372 Identities=22% Similarity=0.390 Sum_probs=282.8
Q ss_pred ecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEEEecCCCC-CeEEEeccCCCCcc-EEEEEec-cCcEE
Q 001190 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKIK 521 (1128)
Q Consensus 447 ~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 521 (1128)
+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 558999999999999999 788888999999999 5554 6777776443 77777774 44555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-E
Q 001190 522 AWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1128)
Q Consensus 522 ~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 599 (1128)
+|+... ......+..|...|..++|+|++..++.++. .++.+++|+...+..+..+.+|.. .+.+++++|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999987 6777788889999999999999997777752 389999999999899999998776 899999999988 5
Q ss_pred EEEEECCCcEEEEECCCCeeeE-EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccC
Q 001190 600 FLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1128)
Q Consensus 600 l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1128)
+++++.|+.|++||...+.... .+..+.. .. ...|+|++..+++++.|+.+++|+..........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------- 279 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT----------- 279 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-----------
Confidence 5555899999999988777776 4554433 32 2289999989999999999999998754210000
Q ss_pred cceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
.
T Consensus 280 ------------------------------------------------------------------------------~- 280 (466)
T COG2319 280 ------------------------------------------------------------------------------L- 280 (466)
T ss_pred ------------------------------------------------------------------------------E-
Confidence 0
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
.+|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEE
Confidence 11567788889999888888888888899996543211 00000 012556788888
Q ss_pred eccCCCeEEEE-e-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEecccceeeecccccc
Q 001190 839 LSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 839 ~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
+.+++..++.+ . ++.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84343566655 3 7889999998877333333222 288999998 7 55555 8899999999999888777766554
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
..+....+++++..+++++.++.+++|+...
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7899999999999999999999999999988
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=172.03 Aligned_cols=300 Identities=17% Similarity=0.246 Sum_probs=220.0
Q ss_pred cccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..++..+.|.+++. .+++++.|..|++|.+........+..+ .....+.. |...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls~--H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLSR--HTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeecccC--CcceeEEEEEcCC
Confidence 35688888888877 8999999999999998765432211000 11112333 9999999999999
Q ss_pred CCeEEEEe-CCeEEEEECC--------C--------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 843 DSYVMSAT-GGKISLFNMM--------T--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
|.+||+|+ +|+|.+|... + ....+.+.+|...|..++|+| ++.++++|+.|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999998 6889999765 3 334566778999999999999 9999999999999999999999
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee---c--------------CCCCCCCccE
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI---P--------------AGKTPTGDTR 968 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~---~--------------~~~~~~~v~~ 968 (1128)
+....+.+|..-|..++|.|-++++++-+.|...+.+++...+......... . +..-..-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999877777776544333222100 0 0001145678
Q ss_pred EEEcCCCCEEEEEe-----cCe-----EEEEecCCccc-ccccccCCCCCCCeEEEEEee--------C---------CC
Q 001190 969 VQFNADQVRMLVVH-----ETQ-----LAIYDASKMER-IRQWTPQDALSAPISCAVYSC--------N---------SQ 1020 (1128)
Q Consensus 969 v~~s~d~~~l~~~~-----d~~-----i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~--------d---------g~ 1020 (1128)
++|+|||.++++.. ++. .++|+-...+. +..+... ..+...+.|+| + -+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccc
Confidence 99999999999731 333 35555443222 2233222 55666666665 1 13
Q ss_pred EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1021 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.++.....+.|+|||.++...++... .-|-..++.++|++ |+..++..|.||-.-+=.++..|
T Consensus 313 lvfaiAt~~svyvydtq~~~P~~~v~-----------nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIATKNSVYVYDTQTLEPLAVVD-----------NIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEeecceEEEeccccccceEEEe-----------eeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44444457789999999998888777 34556679999999 79999999999987665555444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=167.62 Aligned_cols=287 Identities=14% Similarity=0.192 Sum_probs=210.6
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc-------cCCC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~ 419 (1128)
.-.+.|||||. .+.+-+.|..+.+|++...-.-....... -.+.+..+-.-....|...+|= |+..
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 34688999999 55667899999999985321110000000 0000111111124467777774 6788
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeeccccc---ceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeE--EE---
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FN--- 489 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~--~~--- 489 (1128)
++|+.+.+.-|++||.-+|+....+. .-.|.. .-.+++|+|||. .|++| ....|+++| ..|+.. ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999998655432 223544 345899999999 56654 578999999 556532 11
Q ss_pred --ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 490 --FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 --~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.+..+-|.+++|+|. +...++.|+...++-+|.-...+....+-+|.+.|+.+.|.+||+.|.+++. .+-.|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 1234667889999986 4568999999999999988888888899999999999999999999999986 688899
Q ss_pred EEeCCC-CceeeEeccccCCceeEE--EEeCCCCEEEEEECCCcEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 568 EWNESE-GTIKRTYAGFRKKSNGVV--QFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 568 ~wd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 456677777765333344 4468899999999999999999988 776666665543 7999999999888
Q ss_pred EEEEEcC
Q 001190 644 LAVTTAD 650 (1128)
Q Consensus 644 l~~~~~d 650 (1128)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=178.16 Aligned_cols=290 Identities=12% Similarity=0.156 Sum_probs=217.1
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCc-cee
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LRQ 443 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~ 443 (1128)
...++|||+...+..-. + .-....-.+.++.|+.... .+|+-+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--------------~---~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--------------Y---VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--------------c---ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 45799999876543321 0 0111233499999998764 333445688899997554311 111
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 522 (1128)
...+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+.+|...|+++.+.. ...+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEE
Confidence 1122222 223333333334 899999999999999 65556678899999999999865 4579999999999999
Q ss_pred EecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC-CEE
Q 001190 523 WLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHF 600 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 600 (1128)
-.+.++.....+... +..++-+.|++..+.+++... .+|.|.+||+....++..+...+..+...+||+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999888777777766 457779999999888776654 489999999999888888776666688889999976 467
Q ss_pred EEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcc
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (1128)
++.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||++..+..+..+..|. ..|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~-----~sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD-----ASV 296 (673)
T ss_pred EEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc-----cce
Confidence 778999999999999877777765432 679999999999999999999999999998877777666544 348
Q ss_pred eeeeeeccc
Q 001190 681 ESVALKVSA 689 (1128)
Q Consensus 681 ~~~~~s~~g 689 (1128)
.+++|-+.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 889887765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=172.53 Aligned_cols=265 Identities=16% Similarity=0.195 Sum_probs=188.6
Q ss_pred CcceEEeecCCCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcceEE
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
|.--...++|.+.|+-+.-++-|+ .++|+-+..|.|.|||+...-.. ....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444555667888999998888753 36777788999999998542111 100000000 111233458899999999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC--eE
Q 001190 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KL 487 (1128)
Q Consensus 412 l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~--~~ 487 (1128)
++|||- -..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||.... +|+|||.||+|+||| ..+. ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234778888889999999988655444457789999999999998776 899999999999999 6662 22
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC---ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
...+.|.+.|+.+.|+... .+|++|+.||+++|||++..+ ....+..|..+|+++.|+|....++.++. .|.
T Consensus 296 ~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~ 370 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDN 370 (440)
T ss_pred eEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCC
Confidence 3348899999999997643 499999999999999997644 44578889999999999997665444443 589
Q ss_pred eEEEEeCCCCce----------------eeEecccc-CCceeEEEEeCCC-CEEEEEECCCc
Q 001190 565 FLVEWNESEGTI----------------KRTYAGFR-KKSNGVVQFDTTQ-NHFLAVGEDSQ 608 (1128)
Q Consensus 565 ~i~~wd~~~~~~----------------~~~~~~~~-~~~v~~~~~~~~~-~~l~~~s~dg~ 608 (1128)
+|.+||+..-.- .+-+.-|. +..+.-+.|++.- .++++.+.||.
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 999999863211 11122221 1235567777654 46666666653
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=174.93 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=207.9
Q ss_pred CcccEEEEEEecCcc--eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+.++|++++|.|... .+++|...|.|-+||+.......++. ..+..|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------------~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------------YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------------EEeccCCccccceEec
Confidence 788999999999765 56677778999999985322111111 1112388999999999
Q ss_pred cCC-CeEEEE-eCCeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-eecccccc
Q 001190 841 KND-SYVMSA-TGGKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQ 915 (1128)
Q Consensus 841 ~dg-~~la~~-~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~ 915 (1128)
|.. ..+++. .||+|++-|++...... .+......+..+.|+. +...++.|..=|...+||++++.. ...+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 954 344444 49999999998765433 3332445677888988 555556666667999999997644 67778899
Q ss_pred cCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecC-
Q 001190 916 KRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS- 992 (1128)
Q Consensus 916 ~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~- 992 (1128)
..|.+|+++|-.. +|||+|.|++++|||+..-.....-.+... .|. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-ccc-ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 9999999999754 889999999999999986443332112222 222 78999999998776776 569999999984
Q ss_pred ---CcccccccccCCCCCCC--eEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE
Q 001190 993 ---KMERIRQWTPQDALSAP--ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1067 (1128)
Q Consensus 993 ---~~~~~~~~~~~~~h~~~--v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1128)
.......+.-...+... .....|.||..++++|..-..|-|+|-..++.++.+..+. ....+.-.
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~----------~~tI~~vn 470 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE----------SSTIPSVN 470 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc----------ccccccce
Confidence 33333333322222233 2455799999999999999999999999999888866322 11112346
Q ss_pred EEecCCCCEEEEEECCCcEEEEcC
Q 001190 1068 AAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1068 ~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
.|+|-+..+++-++..|.|.||--
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 799964446666777788888843
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-17 Score=175.71 Aligned_cols=496 Identities=15% Similarity=0.183 Sum_probs=301.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC----------CCeEEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDK 475 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d----------~~~~~l~s~s~d~ 475 (1128)
...-.++.|+|.| +||.|+.. .|.|-|..+-+.+. ++.-|...|+.+.|.|. ...++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346778999877 67777654 58888887766555 67889999999999763 2346889999999
Q ss_pred eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc--cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-CC
Q 001190 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GS 551 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-g~ 551 (1128)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++.....++.+|+.++++..+.+........++.+.|- .+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888999999999999999876543 47777788899999999999999998888888888999884 44
Q ss_pred eEEEeeeccCCCceEEEEeCCC-------CceeeEeccccC----------------Cc--------eeEEEEeCCCCEE
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHF 600 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l 600 (1128)
.+...+. .|.+.+-+.-. |+..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4443332 44454443321 222222222111 00 0114678877777
Q ss_pred EEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC--CEEEEEEcCCcEEEEEcccCccccccccCCccccccC
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1128)
+.......+.++|++-..++.......+ .+.-+.+-|++ ..|.+...||.+.+|-.......++..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---------- 313 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---------- 313 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc----------
Confidence 7777888999999999999888877665 34556666654 568899999999999765432221111
Q ss_pred cceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
...+.++ + ..++..+...
T Consensus 314 -~~~l~~d--------------------------------------------------------l-----~~Q~~~vr~m 331 (1062)
T KOG1912|consen 314 -NASLSMD--------------------------------------------------------L-----GEQVHVVRPM 331 (1062)
T ss_pred -chhhccc--------------------------------------------------------c-----ccceEEEeec
Confidence 0000000 0 0000000000
Q ss_pred CCCCCcccEEEEEEecC-cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 759 ESTDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
..-.+...+..|. ...++..-.+|.+.+|.+..+....++.........-+|...... .-..-.-+
T Consensus 332 ----~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~---------~v~k~~l~ 398 (1062)
T KOG1912|consen 332 ----EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTK---------LVGKTSLI 398 (1062)
T ss_pred ----hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCcee---------ehhhcccc
Confidence 0011111122222 233444445666777766644332222211000000000000000 00000111
Q ss_pred EeccCCCeEEEEeCCe--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc
Q 001190 838 ALSKNDSYVMSATGGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 838 ~~s~dg~~la~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
.+|.||.. +.|. +++--+..... ..... +.-+....-| ++|.|...|+|.++|+.++...+.+..|+
T Consensus 399 ~LS~dg~h----~sGs~~~~~~p~p~~t~--~~~~p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 399 SLSDDGSH----SSGSTCVRMRPMPELTK--VENDP-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred chhhcCCC----CCCceeeecccCcccce--eecCC-CCCccceeee----eEEeecCCceEEEEEecchhhhhhhcccc
Confidence 22223200 0111 11110000000 01001 1111122222 78999999999999999999999999999
Q ss_pred cCeeEEEEcCCCCEEEEEc----------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecC
Q 001190 916 KRITGLAFSTSLNILVSSG----------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HET 984 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~ 984 (1128)
..|.++.|..... |+|.+ .-+.+.+=|+.+|...... ...+....+|..+..|..|+|+++. .+.
T Consensus 468 ~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR---~l~~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR---GLQKPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred cceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccc---cCCCCCcCcceeeeecccCceEEEEeccc
Confidence 9999999986644 34332 2245778899988654332 2233344889999999999999996 588
Q ss_pred eEEEEecCCcccccccccCCCCCCC-eEEEEEe
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAP-ISCAVYS 1016 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~-v~~l~~s 1016 (1128)
-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 544 plEiwd~kt~~~lr~mS~----a~P~it~leWs 572 (1062)
T KOG1912|consen 544 PLEIWDLKTLRMLRLMSL----ALPLITVLEWS 572 (1062)
T ss_pred chHHHhhccchHHHHHhh----cCCcEEEEeec
Confidence 899999998888877665 344 8999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=168.88 Aligned_cols=252 Identities=17% Similarity=0.246 Sum_probs=185.4
Q ss_pred ceeccCCCcceEEEEEcc-----CCCEEEEEeCCCeEEEEEccCCCcceeceee--cccccceeEEEEecCCC--eEEEE
Q 001190 399 ASIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI--DAHVGAVNDLAFAYPNK--LLCVV 469 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~sp-----dg~~las~~~d~~i~vwd~~~~~~~~~~~~~--~~h~~~v~~l~fs~d~~--~~~l~ 469 (1128)
.++..+|+.+|..++|++ .-..+|+++. ..+.+|+......++.++.. ..|......++|+-|.. ..++|
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 345778999999999985 2345555554 46889988765433332222 24788899999987632 23788
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~ 545 (1128)
.|+.-|.|+|.| .+++....+.+|...|+.+.++|.. .+++++++.|..||+|++++..+...+ .+|...|.++.
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 888999999999 9999999999999999999999874 479999999999999999999998875 45777999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec----------------------------cccCCceeEEEEeCCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA----------------------------GFRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~ 597 (1128)
|+++|.+++++|. |..+.+|++...+....++ -|.+ .|.|+.|- |
T Consensus 189 ~~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--g 261 (385)
T KOG1034|consen 189 FSLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--G 261 (385)
T ss_pred EcCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--h
Confidence 9999999999996 9999999998433211111 1111 33344443 4
Q ss_pred CEEEEEECCCcEEEEEC-CCCeee-------------EEEecCCCCCCcceE--EEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDM-DNVNIL-------------TSTDAEGGLPNLPRL--RFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~v~~v--~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++-|-++.|..|.. +-.+.+ ..+... ...|.-+ +|.|-+++||.|...|.|.+||+...
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 68899888899999987 222211 112211 1133444 45677889999999999999999775
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=174.05 Aligned_cols=630 Identities=12% Similarity=0.107 Sum_probs=365.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-----
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 417 (1128)
|...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 45557889999999 677775 45788888877766543 6668999999999873
Q ss_pred -------CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEe-cCCCe
Q 001190 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 418 -------g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
.-.||++...|.|.+||...+..+. .+..|..+|.+++|-+ +.+. +|+.-....++.+|+ .+|..
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2367888889999999999876554 4778999999999976 3433 566666678999999 99998
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC------CCceeeecCC-CC------------e-------
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDYDAP-GH------------W------- 540 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~~~~-~~------------~------- 540 (1128)
..+.........|+.+.|-.. +.+..-+..|.+.+-+.-. .+....+... .. .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 887776666677788777644 3444445556665554311 1111111111 00 0
Q ss_pred ------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEE
Q 001190 541 ------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1128)
Q Consensus 541 ------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 612 (1128)
...++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..|+++-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 112466776655554443 56799999998888888776665 55567776665 578899999999999
Q ss_pred ECCC----------------CeeeEEEecCCCCCCcceEEEcCC-CCEEEEEEcCCcEEEEEcccCccccccccCCc---
Q 001190 613 DMDN----------------VNILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPP--- 672 (1128)
Q Consensus 613 d~~~----------------~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--- 672 (1128)
-.+. ++....+..-... .+......|. ...++.-..+|.+.+|.+.++........+..
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 7654 2222222211111 1222333443 45566666788899999886522111111000
Q ss_pred ----c---ccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC--CCCcccCCCCCCCCccee
Q 001190 673 ----F---EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 673 ----~---~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~vw~~ 743 (1128)
+ ...-....-+.++-||..- ++. ......+...............+. -..++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sGs--~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SGS--TCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CCc--eeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 0 0000011112233333110 000 000111111111110111111111 135678899999999998
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1128)
....-.... .-|++.|.++.|......+-.+... . .+........+.+.|+.+|.....
T Consensus 455 st~~v~~~f--------svht~~VkgleW~g~sslvSfsys~-~------------n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASF--------SVHTSLVKGLEWLGNSSLVSFSYSH-V------------NSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhh--------cccccceeeeeeccceeEEEeeecc-c------------cccccceeeeEEEEEccccccccc
Confidence 754332222 2389999999999887744433321 0 000111122445667778775432
Q ss_pred cccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCC----------------C
Q 001190 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQD----------------N 885 (1128)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d----------------~ 885 (1128)
.-.......+|+.+..|.-|+||+..- +.-+.+||+++..+++.+...-.-|+.+.|+ | . .
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhh
Confidence 211224678899999999999999998 7779999998887776665444458888888 3 1 1
Q ss_pred CEEEEEeCCCcEEEEeccc-c------ee-eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee
Q 001190 886 NIIAIGTEDSTIHIYNVRV-D------EV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~-~------~~-~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1128)
+.++..+ +..+++.+.. + .. ....+.-.-.+..++| .+..|+.|..+|.+.+||+...........
T Consensus 593 n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~-- 666 (1062)
T KOG1912|consen 593 NLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDS-- 666 (1062)
T ss_pred ceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCC--
Confidence 2233333 2233333221 1 11 0001111112333555 467899999999999999876433221111
Q ss_pred cCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.+.........+-|....+++-....+-+||.+....+..+.+.+. ...+..+.+......++. .|+++++-.+.
T Consensus 667 --p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-sfrlldvdlc~~~~~~l~--~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 667 --PDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-SFRLLDVDLCEKSPLVLP--NDNKERFRVMP 741 (1062)
T ss_pred --CCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-ceEEEEEEecccCceecC--CCCceeEEecc
Confidence 1111223333444544455666667899999998888877754432 455556666544444433 34477777666
Q ss_pred CCceEEE
Q 001190 1038 TLRLRCY 1044 (1128)
Q Consensus 1038 ~~~~~~~ 1044 (1128)
.......
T Consensus 742 mks~~ll 748 (1062)
T KOG1912|consen 742 MKSPPLL 748 (1062)
T ss_pred ccCCccc
Confidence 5544333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-18 Score=171.25 Aligned_cols=247 Identities=16% Similarity=0.234 Sum_probs=189.9
Q ss_pred ceEEEEEcc-----CCCEEEEE---eCCCeEEEEEc-cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 408 ~V~~l~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
.|+.++|.. +.++||.. +..|...|--+ ++|+.-.....+.||+++|..++|+|-..+ .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555533 45666653 22233333333 244443444457799999999999997766 899999999999
Q ss_pred EEe-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC
Q 001190 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1128)
Q Consensus 479 vWd-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g 550 (1128)
||. -.+ +++..+.||...|--++|||... +.|++++.|.+|.+|++.++.....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 699999999999999999999988888 88899999999999
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCeeeEEEecC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
.++++.+. |..|+|||.++++.+..-.+|.+..-..+.|-.++. +++.+ .+..+-+||..+.+.-..+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999984 999999999999999999888886666777888888 55544 5789999998765432222222
Q ss_pred CCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGL 662 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~ 662 (1128)
...+.|.---|.+|.++++.++ .|+.|+.|.+.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2233566667888888877655 59999999998764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=163.86 Aligned_cols=406 Identities=12% Similarity=0.113 Sum_probs=247.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
-++|||+|+|+|+++.- .+.|-|.++-+..+.+ .--..|..+.|..|.-. .|.....|+.|.+|+ ..-+--.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999876 6788888876544321 22456888999999885 566778889999999 66666778
Q ss_pred ecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 490 FEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.....++.+++|+| || .+|.+...|-+|.+|.+.+..... +......+..++|.|||++.+.+... |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 887888999999987 55 677778889999999998765543 33344567899999999999988741 11112222
Q ss_pred EeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
..-..-.+++.+..... ..+.+.|+|||+.|++-.. +-.|+.|.. + -.+..++|+|.+++|++
T Consensus 163 ~~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~-------------~-lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------------G-LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee-------------c-cceeEEEeccccceEEe
Confidence 22223345555555554 5667899999988765331 222222211 1 14688999999999999
Q ss_pred EEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCC
Q 001190 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1128)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1128)
|+.|+.+|+.+--+- ++-++++--..-.+.+..-..........+..++..+.+.
T Consensus 228 GsyD~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~- 282 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT- 282 (447)
T ss_pred eccchhhhhhceeee------------------------eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC-
Confidence 999999998654332 1111111000000000000000000000000000000000
Q ss_pred CCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceee
Q 001190 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1128)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~ 806 (1128)
|-...+|...+ .+..++..| +++-
T Consensus 283 --------~~~a~~~~~se--------------------~~YE~~~~p-------------v~~~--------------- 306 (447)
T KOG4497|consen 283 --------DLEAHIWEESE--------------------TIYEQQMTP-------------VKVH--------------- 306 (447)
T ss_pred --------ccccCccccch--------------------hhhhhhhcc-------------eeee---------------
Confidence 00001111100 000000000 0000
Q ss_pred eeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC---CeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.-+..+ +.+ +..-.+.-++||+|..++++-.| +.+.+||+...+....+. ...+|.+..|+|
T Consensus 307 ----------~lkp~t-D~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP- 371 (447)
T KOG4497|consen 307 ----------KLKPPT-DFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP- 371 (447)
T ss_pred ----------cccCCC-CCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-
Confidence 000000 111 13455778999999999999986 559999998877655543 566899999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCc
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~ 938 (1128)
+...|+.+.....+++|.......+..- +..-.|..+.|.-+|..++-.+.|..
T Consensus 372 ~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 6667777777778999987765555433 23367999999999999999999864
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=177.21 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=182.2
Q ss_pred CCcEEEEeeccCeEEEEEccCCceecccccccccccccC---ccccceeccCCCcceEEEEEccCC-CEEEEEeCCCeEE
Q 001190 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS---LPFQASIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQ 431 (1128)
Q Consensus 356 g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~spdg-~~las~~~d~~i~ 431 (1128)
|+ |+|.|+.|..|.|||+.-...+. ..+.+-.....- .........+|+..|..++|+.+- ..||+|+.|.+|+
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 45 89999999999999986433221 000000000000 000111245899999999998864 5788999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccE
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1128)
+||+.+|++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.| ..-..........+.|-.++|.+... ..
T Consensus 270 lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~ 344 (463)
T KOG0270|consen 270 LWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NS 344 (463)
T ss_pred EEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-ee
Confidence 99999999877 46689999999999998766 899999999999999 53222222222466788899987643 57
Q ss_pred EEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc-cCCce
Q 001190 511 IFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSN 588 (1128)
Q Consensus 511 l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v 588 (1128)
++++..||+++-+|++.. +..+++..|..+|.++++++.-..+++.+. .++.|.+|++..-......... .-+..
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~~~v~~~~~~~~rl 421 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSPKSVKEHSFKLGRL 421 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCCcccccccccccce
Confidence 888899999999999987 677899999999999999987665444332 5999999998754432211111 11235
Q ss_pred eEEEEeCCCC-EEEEEECCCcEEEEECCCCeee
Q 001190 589 GVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 589 ~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
.|.++.|+-. .++.||..+.++|||+.+...+
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5666777654 5666788889999999877654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=172.06 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=189.0
Q ss_pred CCCCCeeEEEeccCCCeEEEE--e-CCeEEEEECC----------------CceEEEEeeCCCCCeeEEEEcCCCCCEEE
Q 001190 829 NLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMM----------------TFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~----------------~~~~~~~~~~~~~~v~~l~~s~~d~~~la 889 (1128)
.|.+.+..+..++-|+-.+++ + .|.|.||++. ..+++.++.+|...=.+++|||.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 377777788777766444443 4 5899999984 23457788899999999999995555677
Q ss_pred EEeCCCcEEEEeccccee---eecccccccCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 890 IGTEDSTIHIYNVRVDEV---KSKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+|.--+.|++|...+|.- ...|.+|+..|-.++|||.. ..|+|||-||+|+|||+..+......... .|. .-
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k---Ah~-sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK---AHN-SD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---ccC-Cc
Confidence 888888999999988742 24577899999999999975 48999999999999999998655544442 222 67
Q ss_pred ccEEEEcCCCCEEEEEe-cCeEEEEecCCcc---cccccccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCc
Q 001190 966 DTRVQFNADQVRMLVVH-ETQLAIYDASKME---RIRQWTPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~---~~~~~~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
|..+.|+.+-.+|++|+ ||.++|||++..+ .+..+..| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 89999999988888875 8999999998544 45555544 899999999984 5577888899999999986421
Q ss_pred e---EEEe--CCCCCCCC-cccCCCCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 001190 1041 L---RCYI--APSTYLSP-SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1041 ~---~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
- .... ....-+++ -.|-|..+..+..+.|+++.+.++++.+.||- .||
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 1 0000 00111222 22345556677889999999999999999996 444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=169.43 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=168.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE------ecCCCeEEEEEecCCCeE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f------s~d~~~~~l~s~s~d~~i 477 (1128)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+ ... +.-...-|....+ -..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 366778899999888777666555545555554432 221 1111111111111 001111157778889999
Q ss_pred EEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.+-+..|+....+..|.+.+.+-.|++ ||.-|+++++||.|++|.- ++-...++.....+|+|++|.|+.+.++.+.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999977 6667999999999999973 4445555666777999999999999888875
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
.+.+.+=.+.....+...+.|.+ .|-++.|++..+.+++||+|-..+|||.. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56677777777777788888887 89999999999999999999999999975 444544444444 8999999
Q ss_pred cCCCCEEEEEEc
Q 001190 638 SKEGNLLAVTTA 649 (1128)
Q Consensus 638 sp~~~~l~~~~~ 649 (1128)
+|+ ..++.++.
T Consensus 236 npd-~~~~v~S~ 246 (737)
T KOG1524|consen 236 NPE-KDYLLWSY 246 (737)
T ss_pred ccc-cceeeeee
Confidence 999 66666653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=202.17 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=207.7
Q ss_pred CCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce----EEEeeccceeEeeeccccCCCCCCceeeee
Q 001190 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG----LLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1128)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (1128)
+.+.++.+|.+........+..+.- .....+...++|.+.|.. ++.|..||.|.+|+...-.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s---~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------- 101 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS---LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------- 101 (1049)
T ss_pred ccccccceeeecccCcccccccccc---ccccccceeeeecccCCCccceeeccccCCceEEecchhhc-----------
Confidence 4457777887776544432222211 125567889999998876 6667779999999854210
Q ss_pred ccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceEEEEee--CCCCCeeEEEEcCCC
Q 001190 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQD 884 (1128)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d 884 (1128)
.++. .........|.+.|..+.|++.+. +||+|. +|.|.|||+...+.-..+. .....|.+++|....
T Consensus 102 -------~~~~-~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 102 -------ANAS-EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred -------cCcc-hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh
Confidence 0111 000111123999999999999776 889987 8999999998755444332 245679999999877
Q ss_pred CCEEEEEeCCCcEEEEecccceeeeccccccc--CeeEEEEcCCCC-EEEEEcCCC---cEEEEECCCCcccceeEEeec
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK--RITGLAFSTSLN-ILVSSGADA---QLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~~-~l~s~~~Dg---~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
.++||+++.+|.+.|||++..+.+-.+..|.+ .+..++|+|+.. .|++++.|. .|.+||++.-
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------- 242 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------- 242 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------
Confidence 88999999999999999999888877776655 467899999864 556665553 4677776541
Q ss_pred CCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecC
Q 001190 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~ 1037 (1128)
...++.+. .|...|.++.|++.+ ++|++++.|+.|.+|+.+
T Consensus 243 -----------------------------------ssP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 243 -----------------------------------SSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred -----------------------------------CCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 11223333 348999999999965 899999999999999999
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+|+.+..+. ....+...+.|+|.++.++++++-||.|-|+.+....
T Consensus 285 tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecC------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999888 4556789999999999999999999999999988664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=162.44 Aligned_cols=284 Identities=13% Similarity=0.134 Sum_probs=198.9
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCC-CceeeeeccceeccCCCccccccccCCCCCCCeeEEEec---
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS-GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS--- 840 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--- 840 (1128)
.-..++-|+|||..+++-+.|..+.+|+++....+.. ...........+.. .....|...+|-
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-------------~eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-------------QEGETVYDYCWYSRM 116 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-------------ccCCEEEEEEeeecc
Confidence 4456789999999999999999999999986543222 11100000000010 123445555553
Q ss_pred ----cCCCeEEEEe-CCeEEEEECCCceEEEEeeC--CCC---CeeEEEEcCCCCCEEEEEeCCCcEEEEec-ccceee-
Q 001190 841 ----KNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPP---ASTFLAFHPQDNNIIAIGTEDSTIHIYNV-RVDEVK- 908 (1128)
Q Consensus 841 ----~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~--~~~---~v~~l~~s~~d~~~lasg~~dg~v~iwd~-~~~~~~- 908 (1128)
|+..++|+.+ +.-|++||.-+|+....+.+ |.. ...+++|+| ||..|.+|. ...|++||+ +.|+.-
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCc
Confidence 5667777777 77799999999999888764 333 356899999 888887654 789999999 444321
Q ss_pred --ec----ccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 909 --SK----LKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 909 --~~----l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
.+ -.+..+-|.+++|+|-.. .++.++....+-||.-..+..+. ..-+|. ..|+.++|.+||..|++|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-----llggh~-gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-----LLGGHG-GGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----eecccC-CCeeeEEeccCcCeeccc
Confidence 11 123467789999999654 89999999899898877765433 233443 899999999999999998
Q ss_pred e--cCeEEEEecCCcc-cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC-CceEEEeCCCCCCCCcccC
Q 001190 982 H--ETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 982 ~--d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~ 1057 (1128)
. +..|..||++..+ .+..+..+......-.-....|+|++|++|+.||.|++||+++ |+......
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~----------- 337 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG----------- 337 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-----------
Confidence 5 8899999999654 4445554432122222344568899999999999999999998 66444443
Q ss_pred CCCccceEEEEEecCCCCEEEEEEC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
.+...+..++++|. -.++++++.
T Consensus 338 -~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 338 -NYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred -cccccccceecCcc-cceeeeccC
Confidence 44556788999994 666666653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=151.39 Aligned_cols=288 Identities=13% Similarity=0.148 Sum_probs=204.6
Q ss_pred cEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.. -..|+...... .+|+.++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 455668899999999999999999998764211 000 01111111112 2499999999997 568
Q ss_pred EEEEeCCeEEEEECCCceE------EEEee-------CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 846 VMSATGGKISLFNMMTFKV------MTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 846 la~~~dg~i~vwd~~~~~~------~~~~~-------~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
|++++||.|+-|....... +.+.. ..-..|+++-+.|..+.++..| .|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc
Confidence 8899999999997654322 11111 1234689999999566655555 79999999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC--CCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP--TGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
||++-|.++.--.....++||++||++|+||.++++..+.+.......-.. ..-.-.+..-+..+|+.|....+.+|.
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH 233 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence 999999999985556678999999999999999998876664332111110 111124556677799999999999999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
+++.++...+.. ..++..+.|-. +.+++++..++|.-|.+ +|.+...+... ++..+..+..-+
T Consensus 234 Lrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~----------s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 234 LRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVE----------STACYSASWQTS 296 (325)
T ss_pred ccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCC----------ccceeeecccCC
Confidence 999999888877 67888888854 47888888899999998 46666655521 233333333334
Q ss_pred cCCCCEEEEEECCCcEEEEc
Q 001190 1071 PLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd 1090 (1128)
| -++|-.++..+.+.|+.
T Consensus 297 p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 P--IKFISIAGFSNKLHILK 314 (325)
T ss_pred c--eEEEEecccceeeeeee
Confidence 4 45677777777887763
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=191.66 Aligned_cols=279 Identities=18% Similarity=0.269 Sum_probs=217.1
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..++|..+|.|+.|...|+ ++++|+.|..|+||..+++.++.. ..||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 3568999999999999998 789999999999999999988865 89999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE----ecC-C
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN----FEG-H 493 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~----~~~-h 493 (1128)
.++|+++.|..|++|.+..+.++. .+.||++.|++++|+|-. +.+.||++++||..-..+.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998876 588999999999999853 68889999999943222111 111 1
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC-eEEEeeeccCCCceEEEEeCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
...+.++.| ..++..++|++.|+.-..|.+..... +...+.-+.++.|-. +.+++- .+..+.+|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecc
Confidence 233445554 33667889999999988886543211 111122222232332 333332 37788999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEE-EEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
+|++.+.+.+|.. .+..+.++|-+..++ +++.||...|||+-.|.+++.... ++ ..+....||+||..++...+-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-gh-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-GH-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-cc-ceeeccccCCCCceEecCCCCC
Confidence 9999999999988 888999999776554 588999999999999988877663 33 3577889999999999999999
Q ss_pred cEEEEEcccC
Q 001190 652 GFKILANAIG 661 (1128)
Q Consensus 652 ~i~iw~~~~~ 661 (1128)
.++|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9999876544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=179.10 Aligned_cols=297 Identities=17% Similarity=0.229 Sum_probs=230.7
Q ss_pred EEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 338 ~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
...|. |.+.|+.|.|...|. +|++||.|..|.+|||..++.... ...||...|....|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 33444 999999999999999 889999999999999999887543 3678999999999988
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe---
Q 001190 417 --DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1128)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--- 490 (1128)
+.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+... -|.|++.|+.+.-.| ..+.+...+
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 5678999999999999887654444433457789999999999999887 799999999999999 555443222
Q ss_pred cCCCC---CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce------eeec------CCCCeEEEEEEcCCCCeEEE
Q 001190 491 EGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 491 ~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~~------~~~~~i~~~~~s~~g~~l~~ 555 (1128)
..+.. ....++..|.. ...+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 22333 45778887764 458999999999999987654332 1111 22337999999977665555
Q ss_pred eeeccCCCceEEEEeCCC--C----------ceee-EeccccCCc-eeEE-EEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 556 CGTSKDGDSFLVEWNESE--G----------TIKR-TYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~~-v~~~-~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
... |-.|+++.-.- | ..+. .++||.+.. |..+ .|.|...++++|+.-|.|.||+..+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 553 77788885432 2 2233 388887632 4445 46788999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99987776 7999999999999999999999999986443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=166.79 Aligned_cols=236 Identities=13% Similarity=0.203 Sum_probs=183.8
Q ss_pred eeccCCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
..+.||+++|..++|+| +...||+|+.|.+|.||++..+... .....|.||...|--++|+|-..+ .|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 6778999999999999999755332 233468899999999999998777 78999999
Q ss_pred CeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCe
Q 001190 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1128)
Q Consensus 475 ~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~ 552 (1128)
.+|.+|| .+|+.+.++. |.+.|++++|+. ||.+|++.+.|..||+||.++++....-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 9999888888 999999999966 788999999999999999999888877655544 566677888998
Q ss_pred EEEeeeccCCCceEEEEeCCCCceeeEe-ccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee-eEEEecCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1128)
+++.+.++-.+..+-+||....+.-..+ .......|..-.+.+|.+.++.+| .|+.|+-|.+.+..+ +..+......
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777777777899999997764432222 222222455566788888887766 799999999877653 3333322333
Q ss_pred CCcceEEEcCC
Q 001190 630 PNLPRLRFSKE 640 (1128)
Q Consensus 630 ~~v~~v~~sp~ 640 (1128)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34566777664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=164.97 Aligned_cols=270 Identities=16% Similarity=0.197 Sum_probs=189.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEE-ccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWE-LAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.|...|+||.|+.+.. ++.++ .|..+.+|+ +.+..... .++-+.. ++. ..|-++- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~---~~~p~df-----~pt---~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEV---AKLPDDF-----VPT---DMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhh---hhCCccc-----CCc---ccccccc-ccCCCCCcce
Confidence 4777889999999987 55555 555555554 43322211 1111100 000 0010000 0000012457
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~ 500 (1128)
++.++.||.+.|.+-.. +.-+ ....|.+.|.+-.|+|||. -|+|.+.||.|++|..+|....++.....+|.|+
T Consensus 78 ~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 88889999988877544 2222 4779999999999999999 7999999999999999998877787788899999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+|.|+.+ ..+++.+ +.+.+=-+...........|.+-|.++.|++..+.+++++ +|...++||.. |+.+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG----ED~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG----EDFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC----CceeEEeeccc-CcccccC
Confidence 9988654 4555544 5566666677777888899999999999999999999998 59999999964 5555555
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
..|.- ++++++|.|+ +.++.++.+ +++ +.. ...+.|..++||+||..+++|+..|.+.+
T Consensus 224 ~~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 224 AAEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Chhcc-ceeeeeeccc-cceeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 55554 8999999999 555555542 333 111 12346899999999999999999988765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=178.53 Aligned_cols=265 Identities=15% Similarity=0.235 Sum_probs=189.4
Q ss_pred eec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 340 ~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
++. |.+.|++++|+|... .|++++.||+|.+|++.....-..+. ..+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCc
Confidence 444 999999999999988 78999999999999994321111111 11344699999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCC-------CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 419 NYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
..+.+|+.||+|+.|++... +.......+.||++.|+.+++++... .|++|+.||+++.|+ ....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 99999999999999965421 11112235779999999999999888 799999999999999 44444 334
Q ss_pred cCCC--CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeeccC
Q 001190 491 EGHE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 491 ~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
.... +--.++.+....- ...++...-+.-.+.+++.......+... ...+..+...|.+.+.+++.
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---- 508 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---- 508 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----
Confidence 3221 2223444422110 11222222222233333333333332221 12466777888888888776
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+..|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 589999999999999999999987 899999999999999999999999999977766655443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=153.25 Aligned_cols=379 Identities=12% Similarity=0.136 Sum_probs=245.9
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE-ECCCcEEEEECCCCeeeE
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~ 621 (1128)
-.+|||+|++++++. +-.+.|-|..+.+..+.|..-. .|.-+.|..|..+++++ ..++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 5588999999988877776644 35568888888887775 578899999999888777
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEE-EEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
.+.. +...+..+.|||||+.+.. ...+-.|.+|.+.+.....-..
T Consensus 86 kIde--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------- 131 (447)
T KOG4497|consen 86 KIDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------- 131 (447)
T ss_pred Eecc--CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--------------------------------
Confidence 7764 3447899999999976554 4558889999987752111110
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
....+..++|.|||++.+
T Consensus 132 --------------------------------------------------------------pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 132 --------------------------------------------------------------PKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred --------------------------------------------------------------cccCceeEEECCCCceee
Confidence 112235666777777655
Q ss_pred EeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEE
Q 001190 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLF 857 (1128)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vw 857 (1128)
..+.-......++. .-+-|.+-. .+.. ..-..+.+.|+|||..||+-. +-+|..|
T Consensus 150 i~sRrDCkdyv~i~--------------~c~~W~ll~------~f~~--dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 150 ILSRRDCKDYVQIS--------------SCKAWILLK------EFKL--DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred eeecccHHHHHHHH--------------hhHHHHHHH------hcCC--CcccccCceECCCCcEEEEecchhhheeeee
Confidence 55442111111100 001111111 1111 344567899999999988654 2333333
Q ss_pred ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--------------------
Q 001190 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-------------------- 917 (1128)
Q Consensus 858 d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------------- 917 (1128)
.. .-.+..++|+| .+++|++|+.|+.++|.+--+.+...++- |-..
T Consensus 208 e~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 208 ER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhc
Confidence 32 24678899999 99999999999999998776665554432 2211
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECC-CCccccee--EEeec-----CCCCCCCccEEEEcCCCCEEEEEe---cCeE
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSV--TIHIP-----AGKTPTGDTRVQFNADQVRMLVVH---ETQL 986 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~--~~~~~-----~~~~~~~v~~v~~s~d~~~l~~~~---d~~i 986 (1128)
-.++.|.|.. -...+|... +.-..... .++.. .......+..++|++|..++++-. .+.+
T Consensus 274 ~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 274 HHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred ccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 1234444321 112233222 10001111 11111 111125677899999999999965 4679
Q ss_pred EEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
-+||+.+.+....+.. ..+|.+..|.|....|+.......+++|...-...++... ..-.+..
T Consensus 345 W~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-------------~GF~i~~ 407 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-------------KGFNIQK 407 (447)
T ss_pred EEEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-------------CCceeee
Confidence 9999998887666654 6899999999988888887777889999987655444333 2235688
Q ss_pred EEEecCCCCEEEEEECCCcEE
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
++|+. ++..++.++.|.--.
T Consensus 408 l~W~~-~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 408 LQWLQ-PGEFIVLCGKDAFCV 427 (447)
T ss_pred EEecC-CCcEEEEEcCCceEE
Confidence 99998 588888888887544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=160.18 Aligned_cols=295 Identities=13% Similarity=0.139 Sum_probs=210.1
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
-.++|.+.|+++.||.+|+ +||+|+.|..+++|+++.--..+. +++. ..-..|...|.|++|...
T Consensus 51 D~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEEccC
Confidence 3467999999999999998 889999999999999864322111 1111 123346689999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-e--EEEecCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-K--LFNFEGH 493 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~--~~~~~~h 493 (1128)
++.|.+|+.+++|..-|+++.+.+... .-....+.|+.+..+|-.. .|++.+.++.|.+|| .... . +..+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 999999999999999999998766532 1122345999999999877 799999999999999 3332 2 2333334
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
......+.|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|.|..+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 45677888888643 6889999999999999876543321 1111222367889999999888753 3344
Q ss_pred EEEeCCCCce-eeEeccccC-----CceeEEEEeCCCCEEEEEECCCcEEEEECCCCe----------------------
Q 001190 567 VEWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------------------- 618 (1128)
Q Consensus 567 ~~wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------------------- 618 (1128)
.+||+-+.++ +..+....+ ..+.+++|-.+ ..+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 5678776443 333331111 13455677654 458999999999999874311
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+..+. +|..-++.+.|+|...+|++.+..+.+++|.-
T Consensus 348 ~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceeEEEe--cccccccceeecCCcceEeccchhhheecccc
Confidence 122233 45557899999999999999999999999964
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=155.75 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=196.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~ 420 (1128)
+|.+.|+|+.|-.+++ |.+|..-|.|++|++.+...... +. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 6999999999999997 57899999999999998765432 33 46788999998887 56
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC-----CCeE--EEEEecCCC-eEEEEecCCCeEEE--e
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLL--CVVTCGDDK-LIKVWELSGRKLFN--F 490 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-----~~~~--~l~s~s~d~-~i~vWd~~g~~~~~--~ 490 (1128)
|.+-+.|+.+.+|++.-+..+. -|.-.++++-|.+- ++.. .++.-+... .+.+-| -|..... .
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D-~g~~tqv~i~ 142 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD-GGDTTQVQIA 142 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhc-cCccceeEcc
Confidence 7788899999999998765332 35555666666542 1100 111111100 011112 0111111 1
Q ss_pred ----cCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCCCCcee----------eecCCCCeEEEEEEcCCCCeEEE
Q 001190 491 ----EGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 491 ----~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
.+..+.+.+..+.... ..-++++|-++|.+.+||+.++.... ....|..++.++.|.+.-..=++
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 1234556666543222 22356778899999999998874433 33446678999998876555555
Q ss_pred eeeccCCCceEEEEeCCCC--ce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 556 CGTSKDGDSFLVEWNESEG--TI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
++. +..+..|++... .+ +.......+..+..+.+-||++.++++|.|+.|+||+.++.+++..+..|.. .|
T Consensus 223 gga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gv 296 (323)
T KOG0322|consen 223 GGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GV 296 (323)
T ss_pred CCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ce
Confidence 553 556777776533 22 2222223334678899999999999999999999999999999999987764 89
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++++|+|+..++|.++.|+.|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999985
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=165.75 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=163.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.||++-|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+. .||.+.|.++.|.|....-.++||..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3489999999999999999999999999999999999877776643 49999999999999755558999999999999
Q ss_pred EecC-----------CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----------eecCCC
Q 001190 480 WELS-----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (1128)
Q Consensus 480 Wd~~-----------g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~ 538 (1128)
+|.+ ......+..|...|..++..+.. -..+.++++||+|+-+|++...... .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9933 12345667789999988876532 2789999999999999997632111 011111
Q ss_pred CeEEEEEEcCCCC-eEEEeeeccCCCceEEEEeCCCCceeeEeccccC------CceeEE-EEeCCCCEEEEEECCCcEE
Q 001190 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVV-QFDTTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 539 ~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~s~dg~i~ 610 (1128)
-...++.++|... +|++|+ .+...++||.+... ..+..... ....|+ -|+|.+- ...
T Consensus 201 ielk~ltisp~rp~~laVGg----sdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~----- 265 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGG----SDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNS----- 265 (758)
T ss_pred heeeeeeecCCCCceEEecC----CCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCc-----
Confidence 2567899999765 555555 37889999964221 11111110 001111 1222110 011
Q ss_pred EEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccc
Q 001190 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
.+...... ..++-+.|+|+|.-|.+.-....|+++|+..++....
T Consensus 266 -----~gn~~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 266 -----QGNLDRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -----ccccccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 11111111 1246688999998888887778999999988754443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=175.35 Aligned_cols=250 Identities=14% Similarity=0.178 Sum_probs=188.1
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEcc-----CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+..|...|+.++|.|-...|++|+.||++++|+++ .+..+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3344667778999999999999999999 899999999
Q ss_pred eEEEEe-------cCC----CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEE
Q 001190 476 LIKVWE-------LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (1128)
Q Consensus 476 ~i~vWd-------~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~ 542 (1128)
+|+.|+ .+. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .+-..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 111 2346778999999999998866 4699999999999998755444 222222 22234
Q ss_pred EEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCceeeEecccc------CCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 543 TMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 543 ~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
++.+-... ...++.. ..+.-.+.+...+.....+.... ...+..+..+|.....+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~----~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF----RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhc----ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 1222211 12222234444444444333211 1245667788889999999999999999999
Q ss_pred CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++.++.....+. ..+.++++.|+|.+|++++.|+.+++|.+...
T Consensus 520 ~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 999998887654 37899999999999999999999999998665
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=142.88 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=190.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.|.+-+++|.++ +|+.|..+|.|-+..+..-..-..+ +.-......+.+|+++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 467778999999 7899999999999998642111000 00111112357899999999998 45777776
Q ss_pred CCCeEEEEEccCCCc---ceece--eecccc-----cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 426 TKHLIQLYSYAGSND---LRQHS--QIDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~---~~~~~--~~~~h~-----~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
||.|+-|..+.... .+... ....|. -.|+++-..|... -++.++.|+.++.|| .+|+..+.++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 49999998864332 11100 111233 3588888888776 355555799999999 9999999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC----------CCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
+.|.++.-.. ....+++|++||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 9999998632 2347889999999999999998887755432 235666664 556898885 56
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC-CE
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~ 643 (1128)
.+.+|+++..+....|+-.. .+..+.|. .+.+++++..+.|.-|.+ +|.+....+...+ ...+..|+... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 79999999998888776543 46666675 357888888889999987 4544444443322 34444444332 33
Q ss_pred EEEEEcCCcEEEE
Q 001190 644 LAVTTADNGFKIL 656 (1128)
Q Consensus 644 l~~~~~dg~i~iw 656 (1128)
+-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444444555443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=150.91 Aligned_cols=308 Identities=14% Similarity=0.165 Sum_probs=197.6
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
..+.+..+...++++.|..+++ |+++. ..|.|.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3455667888899999988876 55554 48899999999999998999777667888887776 678899999999
Q ss_pred EEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC-cEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
.+|++..+..+..-.. .++++-|.+-. +...+... ....++-+...+ ...... +.-..+.+-++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------CccceeEccCc
Confidence 9999988665543321 34455554321 11111100 011111100000 000000 00001111111
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
.. .+..+.+.
T Consensus 145 ~~----------------------------------------------------------------------~~Klgsvm 154 (323)
T KOG0322|consen 145 SE----------------------------------------------------------------------RSKLGSVM 154 (323)
T ss_pred hh----------------------------------------------------------------------ccccCcee
Confidence 00 11223333
Q ss_pred EEEEe-cCcc--eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 769 RLLYT-NSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 769 ~l~~s-~~g~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
+..+. .++. .+++|.++|.+.+||+...+. +.++.....+..... .|..+|.++.|.+.-..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~a--sh~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPNA--SHKQPVLSLDYASSCDR 219 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccchh--hccCcceeeeechhhcC
Confidence 33321 1222 356677799999999876421 111111111111222 28899999999865444
Q ss_pred EEEEe-CCeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 846 VMSAT-GGKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 846 la~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
=++++ +..+..|+++. +. ...+..-....|..+.+-| |++++|++++|+.|+||+.++.+.+..++.|++.|++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 45555 67788887753 22 2233333456789999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
++|+||...+|.++.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=163.66 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=159.6
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEE
Q 001190 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 955 (1128)
.+++|++ +|..|++|+.||++|||+..+...+.....|...|.++.|||||++|++.+.| ..+||++.+|..+....-
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999 99999999999999999998888888888999999999999999999999999 899999999855443321
Q ss_pred eecCCCCCCCccEEEEcCCC---CEEEEE---ecCeEEEEecCCccc-----ccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 956 HIPAGKTPTGDTRVQFNADQ---VRMLVV---HETQLAIYDASKMER-----IRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~---~~l~~~---~d~~i~v~d~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
.........+.|+.|+ .+.++. ..+.|+.|++...+. .+..... ...|++++.|+||++++.
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISSLAVSDDGKFLAL 298 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCcceeEEEcCCCcEEEE
Confidence 1122556778888877 333332 256677666553222 1222211 568999999999999999
Q ss_pred EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1025 TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1025 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|+.||.|.|++..+.+.+.... +.|...|+.+.|+| |.+.+++.+.|.+..+..++-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999999888777 68999999999999 689999999999999998775
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-13 Score=153.76 Aligned_cols=150 Identities=20% Similarity=0.302 Sum_probs=127.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
+.++++.- ++++|+.-+.|.+|++...+.. ..+.||.+.|.++.||-||++++++++|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 44567765 6899999999999998722211 148999999999999999999999999999
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC-CeEEEeccCCCCc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENI 508 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~-~v~~~~~~~~~~~ 508 (1128)
+++|++++++.... +.-+|+++|+.++|.|+ .++|++.|.+.++|+.++..+..+.+|.+ .|+.++... +.
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 99999999887663 45699999999999988 49999999999999988888889999865 688888865 45
Q ss_pred cEEEEEeccCcEEEEecCC
Q 001190 509 QFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~ 527 (1128)
..++|++.|+.+++|++..
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEeeccCcchhhhhhhc
Confidence 7899999999999998743
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=156.98 Aligned_cols=291 Identities=14% Similarity=0.160 Sum_probs=194.8
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---CeEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---HWCT 542 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~~i~ 542 (1128)
.++++-..|+|++|| .+|+.+..++++...++.+.|........+.+++.||+|++||++.......+.... .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577788899999999 889999999999999999999775456789999999999999999877665443332 3566
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCee-
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~- 619 (1128)
+++..-.++.++++..-...+..|.+||++..+. ++.+...+...|++++|+|.. +.|++||.||.|.+||++....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667778887765555678899999998765 666655555589999999965 7889999999999999876532
Q ss_pred ---eEEEecCCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccc-ccccc
Q 001190 620 ---LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA-SSAVS 694 (1128)
Q Consensus 620 ---~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~ 694 (1128)
+.++. +...|.++.|..++ +.|.+-+..++..+|+++.+...... ......... ....+. .+++
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~-~~~~~~~~d------~r~~~~~dY~I- 270 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL-ENPDVSADD------LRKEDNCDYVI- 270 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc-cCccchhhh------HHhhhhhhhee-
Confidence 22232 23358899999876 45888888999999999987432221 111000000 000000 0000
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc-cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT-VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
.. ....+....+ .++..+...++-+................ .+|..-|+++.|.
T Consensus 271 ---------------------~~---~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 271 ---------------------NE---HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFD 325 (376)
T ss_pred ---------------------ec---ccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhh
Confidence 00 0001112222 22223444444443211111111112221 3477778899999
Q ss_pred cCcceEEEeeccceeEeeec
Q 001190 774 NSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~ 793 (1128)
..+..+.+|+.||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 99999999999999999975
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=160.75 Aligned_cols=272 Identities=13% Similarity=0.184 Sum_probs=177.7
Q ss_pred EEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~ 436 (1128)
++++...++.|.+|++.+ |+.... ..+ .+.+....++++||+++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLL-----------------QVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeee-----------------eEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445557799999999964 332111 012 1345677899999999987765 57889999997
Q ss_pred CCCcceeceeecccccceeEEEEecCCCeEEEEEe-cCCCeEEEEe-c-CCC---eEEEecCCCCCeEEEeccCCCCccE
Q 001190 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQF 510 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~-s~d~~i~vWd-~-~g~---~~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1128)
....+...... ...+....++|+|+++. ++++ ..++.|.+|+ . .|. .+..+.+ .....++++++ ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222221111 12345678999999994 4444 4588999999 3 332 2333332 23456677766 6667
Q ss_pred EEEE-eccCcEEEEecCCCCceee------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--Cc--eeeE
Q 001190 511 IFST-AIDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKRT 579 (1128)
Q Consensus 511 l~s~-~~dg~i~~wd~~~~~~~~~------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~ 579 (1128)
++++ ..++.|.+||++..+.... ....+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 7554 5669999999976432210 1112345678999999999988764 478999999973 33 3333
Q ss_pred eccccC-----CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCe----eeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 580 ~~~~~~-----~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 332111 1123478999999999986 47899999985432 22322221 13568899999999998876
Q ss_pred -CCcEEEEEccc
Q 001190 650 -DNGFKILANAI 660 (1128)
Q Consensus 650 -dg~i~iw~~~~ 660 (1128)
+++|.+|+++.
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 88999998753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=146.61 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=184.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeecc-------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
++|.++|+.++-+|..+++|+|...+ ..+.||.+........ ...|+ .-..+-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tlE-------~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTLE-------CVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchhh-------HhhcCCHHHhCceeeEE
Confidence 46889999999999988899998653 2578999865432210 00010 01112225667999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcc-eece--eecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHS--QIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~--~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|.|++..||+-. |..|.+|+++.+..+ .... .-.+|....++-+|+| ||. .+++.+ |+++..|| .+.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhh
Confidence 999999999876 778999999987652 2111 1124667788999998 676 466555 89999999 766666
Q ss_pred EEe-cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeE-EEeeeccCCCc
Q 001190 488 FNF-EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l-~~~~~~~~~~~ 564 (1128)
..+ ..|...|..+.|.|+.. .+|++++.||.|++||.+..+. ...+..|.++|.++.|+|....| ++++ .|.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~----SDs 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG----SDS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC----CCc
Confidence 555 46888999999988754 7899999999999999987654 45788899999999999976554 5555 388
Q ss_pred eEEEEeCCCC-----------------------------ceeeEeccccCCceeEEEEeCCCCE-EEEEECCCcEEEEEC
Q 001190 565 FLVEWNESEG-----------------------------TIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDM 614 (1128)
Q Consensus 565 ~i~~wd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~ 614 (1128)
.|.+|....- ..+.++..|.+ .|.+++|+....+ +++-+.||.+.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 8888864321 12235566666 8999999876655 555789999887655
Q ss_pred C
Q 001190 615 D 615 (1128)
Q Consensus 615 ~ 615 (1128)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 3
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=179.73 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=182.6
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.||-+.|.|++|...|.++++|++|..++||..+++.++. .+.||.+.|+.++.+.+.. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 388999999999999999999999999999999999998877 6889999999999998877 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
. ..|.++..+.||++.|++++|+|-. +.+.||++++||.+-...... -......+.++.|-..+..+++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9 9999999999999999999998844 778999999999872211111 0112335667777777777777
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
++. ++.-..|...- +..+.. .+..+.++.+- .+.+++-.+-.+++|++.+|.+.+.+..+.+ .+..
T Consensus 334 gs~----d~ea~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yv 400 (1113)
T KOG0644|consen 334 GSR----DGEARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYV 400 (1113)
T ss_pred ccC----CcccccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceee
Confidence 764 44444454321 111111 11111222122 3555566778899999999999988886655 7889
Q ss_pred EEEcC-CCCEEEEEEcCCcEEEEEcccCc
Q 001190 635 LRFSK-EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 635 v~~sp-~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
+.++| +.+...+++.||...|||+-.+.
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeeecccCC
Confidence 99999 45556688899999999998773
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-15 Score=142.62 Aligned_cols=288 Identities=14% Similarity=0.264 Sum_probs=206.4
Q ss_pred EEeecCCCcEEEEEEe--CCCCcEEEEeec----cCeEEEEEcc--CCceecccccccccccccCccccceeccCCCcce
Q 001190 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fs--pdg~~lla~gs~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1128)
.....-.-.+.++.|| |+.+..||.||. .+.|.|-.+. +++.+... -..|..++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 4444455678899998 677778899974 3566665553 33433221 23589999
Q ss_pred EEEEEccCCC-----EEEEEeCCCeEEEEEccCCC-cceecee-----ecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 410 SRVAWSPDGN-----YVGVAFTKHLIQLYSYAGSN-DLRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 410 ~~l~~spdg~-----~las~~~d~~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+.+-|.|+.+ +||+++ -.+++|.+...+ .++.... -..+.+++++..|..-..+ ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 666654 369999987422 1111111 2246779999999876555 899999999999
Q ss_pred EEe-cCC---CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCC--CCeEEEEEEcCC-C
Q 001190 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAP--GHWCTTMLYSAD-G 550 (1128)
Q Consensus 479 vWd-~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~--~~~i~~~~~s~~-g 550 (1128)
||| .+| .....+-.|...|..++|.. +.-+.+++.+.||.+|+||++..+.... +... ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 655 34677889999999999986 3457999999999999999987655433 3322 347788888875 4
Q ss_pred CeEEEeeeccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCee------eEE
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI------LTS 622 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------~~~ 622 (1128)
+++++... ....|.+.|++.. .++..+++|.. .|..++|.|.. .+|.++|.|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666654 4667999999864 57888999987 89999999965 6889999999999999976422 222
Q ss_pred EecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEE
Q 001190 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i 655 (1128)
.. ....|+.+.|++ .+..++.+.. +.+.+
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22 233799999997 5567776653 34433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=161.44 Aligned_cols=261 Identities=14% Similarity=0.225 Sum_probs=172.1
Q ss_pred cccCCC-CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccC
Q 001190 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~-~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|++.. ........+.+.+....++|+|||+++++++..++.|.+|+++. ++..... ...
T Consensus 16 ~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~------------------~~~ 77 (330)
T PRK11028 16 VWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA------------------ESP 77 (330)
T ss_pred EEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee------------------eec
Confidence 666642 23345566667778899999999996555555688999999973 3321100 001
Q ss_pred CCcceEEEEEccCCCEEEEEeC-CCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~-d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
..+....++|+|+|++|++++. ++.|.+|++++.. .......+ .+......++|+|+|+. ++++...++.|.+||
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEE
Confidence 2235678999999999998864 7899999997432 22221122 23345678899999995 456777789999999
Q ss_pred cCCCeEE-------EecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEEecCCC--Cc--eeeecC------CCCeEEE
Q 001190 482 LSGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM--GS--RVDYDA------PGHWCTT 543 (1128)
Q Consensus 482 ~~g~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~--~~--~~~~~~------~~~~i~~ 543 (1128)
.+...+. .... ......++|++ ++++++++.. ++.|.+|+++.. .. ...+.. .......
T Consensus 156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecCC-CCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 4432221 1111 23356788866 6788888776 899999999743 21 111211 1112346
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEEECC
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMD 615 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~ 615 (1128)
+.++|+|++++++.. .++.|.+|++.... .+...... .....+.++|+|++|++++. ++.|.+|+++
T Consensus 233 i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 889999999998753 47889999986533 22222221 13456899999999998875 8999999874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=169.07 Aligned_cols=308 Identities=18% Similarity=0.328 Sum_probs=210.3
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC---CCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
+...+-..+.|+|-.. .++++...-.|+||| ..++.+..|..+ ...|+.+.+....|..++++++.||.||+|+
T Consensus 1062 ~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3334566788888887 688888778999999 999988877654 3468889888777888999999999999995
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
--.... +...|+++. ..-++. ..+..+ .-..+.|.....+|+++|
T Consensus 1140 ~y~~~~------------------~~~eLVTaw------------~~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1140 DYADKW------------------KKPELVTAW------------SSLSDQ----LPGARG-TGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred cccccc------------------CCceeEEee------------cccccc----CccCCC-CCeeeehhhhCCeEEecC
Confidence 321110 111233331 111111 111111 113356666677888888
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
.-..|+|||.........+..... ..|+++.-+. .|+.++.|..||.|++||.+.....
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------------- 1244 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------------- 1244 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-------------------
Confidence 889999999998888887776543 3566665443 5799999999999999997654110
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
..|.+|.- |
T Consensus 1245 ----------------------------------------------------s~v~~~R~-------------------h 1253 (1387)
T KOG1517|consen 1245 ----------------------------------------------------SLVCVYRE-------------------H 1253 (1387)
T ss_pred ----------------------------------------------------ccceeecc-------------------c
Confidence 11122221 4
Q ss_pred ccc--EEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 764 SSK--VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 764 ~~~--i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
... |..+.+-+.|-. |++++.+|.|++||+..... .... .....| ...+..+++..+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e~~~--~iv~~~---------------~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---ETFL--TIVAHW---------------EYGSALTALTVH 1313 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---cccc--eeeecc---------------ccCccceeeeec
Confidence 444 888888887755 99999999999999875210 0000 000001 123468999999
Q ss_pred cCCCeEEEEeCCeEEEEECCCceEEEEeeC-------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1314 ~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999853 33333321 234689999999 78889999999999999876543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=149.99 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=217.2
Q ss_pred eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC------CCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 533 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.+..|.+.|.++.||.++++|++++. |..+++|++. +.+++.....|+...|.+++|...+..+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 45568889999999999999999984 8899999975 3466776666665689999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeee
Q 001190 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1128)
++|...|+++.+.+.........+.|+.+..+|..+.+++.+.++.|.+||.......... +...
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------------~~~A 191 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------------VLPA 191 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------------eeec
Confidence 9999999999999998877666668999999999999999999999999998764211110 0000
Q ss_pred cccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCccc
Q 001190 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1128)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1128)
.....
T Consensus 192 ---------------------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 192 ---------------------------------------------------------------------------NSGKN 196 (609)
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 02223
Q ss_pred EEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCC-CCCCeeEEEeccCCC
Q 001190 767 VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDS 844 (1128)
Q Consensus 767 i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~ 844 (1128)
...+.|.|.... |++.+..+.+-+||+...... ++... ...+.. ....-..+.|+|.|.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------~~~~~-------~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------VYQRS-------MFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccch------------HHhhh-------ccccCcccchhhhheeeCCCCC
Confidence 455667776554 455566788999987643210 11100 001100 123345788999998
Q ss_pred eEEEEeC-CeEEEEECCCceEE-EEeeCCC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc----------
Q 001190 845 YVMSATG-GKISLFNMMTFKVM-TTFMSPP-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---------- 905 (1128)
Q Consensus 845 ~la~~~d-g~i~vwd~~~~~~~-~~~~~~~-------~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---------- 905 (1128)
.+.+-.. ..-.+||+.+..+. ..+. |. ..+.+++|.. ..-+++|+.+-.|++|.+...
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccC
Confidence 8877764 44667888775543 3332 22 2467788874 455999999999999998531
Q ss_pred -------------eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001190 906 -------------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 906 -------------~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+.+..++||..-+..|.|+|...+|++.+..+.++||.--
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1235688999999999999999999999999999999754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=150.60 Aligned_cols=273 Identities=12% Similarity=0.161 Sum_probs=192.1
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~vwd~~ 436 (1128)
.+|++-..|+|+|||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888999999999999887754 788999999999977 46678899999999999999
Q ss_pred CCCcceeceeecccc-cceeEEEEecCCCeEEEEEecC----CCeEEEEe-cCCCe-EEEe-cCCCCCeEEEeccCCCCc
Q 001190 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~----d~~i~vWd-~~g~~-~~~~-~~h~~~v~~~~~~~~~~~ 508 (1128)
+.....++ ...+|. .+..+++-...++ .+++|.. |-.|.+|| ...+. +..+ ..|.+.|++++|+|+. -
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87665443 345565 5677777765666 5666653 56799999 44443 4444 5799999999999984 4
Q ss_pred cEEEEEeccCcEEEEecCCCCce---eeecCCCCeEEEEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCceeeEecccc
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1128)
..|++|+.||.|.++|+...... .....++..|.++.|..++ +.|.+.+ ......+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCcc
Confidence 79999999999999998665332 2334456679999999887 3455544 37789999999887655544321
Q ss_pred CC---------ceeEE-EEeC-CCCEEEEEEC-CCcEEEEECC---CCe---eeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 585 KK---------SNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 585 ~~---------~v~~~-~~~~-~~~~l~~~s~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
-. .-..+ +.+| +...++.++. -|...++-+. ++. .+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 10 00111 1223 3344555443 5555555443 332 2333332 34456788889888999999
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
|+.||.+.+|...
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999863
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-15 Score=164.90 Aligned_cols=269 Identities=15% Similarity=0.199 Sum_probs=201.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
+|++.+. ......+.-...|+|++|+|....++|.|..+|.|.+||+..+....... .......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCC
Confidence 8998887 88888899999999999999998899999999999999998876521000 112356799
Q ss_pred cceEEEEEccCC--CEEEEEeCCCeEEEEEccCCCcceeceeec---------ccccceeEEEEecCCCeEEEEEecCCC
Q 001190 407 ISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 407 ~~V~~l~~spdg--~~las~~~d~~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999997654 459999999999999886432211100010 12346899999987766 788999999
Q ss_pred eEEEEe---cCCCe------EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-CCCceeeecCCCCeEEEEE
Q 001190 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 476 ~i~vWd---~~g~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~ 545 (1128)
.|..-+ .+-.. +..+..|.++|+++.++|-.. ..+++++ |.++++|... .......+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988743 22122 345667889999999877643 3455555 9999999887 5566666777777899999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
|||-.-.++++.. .+|.+.+||+... .++.+.... ......+.+++.|+.|++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998776666653 6999999998754 344444433 33667788899999999999999999999864
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=169.34 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=164.9
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcce
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 442 (1128)
+..|.|||.+..... .+..|...+.+.+|||||++||.++.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998654421 256688899999999999999988654 469999998876432
Q ss_pred eceeecccccceeEEEEecCCCeEEEEE-ecCCCeEEEE--ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEE-eccC
Q 001190 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDG 518 (1128)
Q Consensus 443 ~~~~~~~h~~~v~~l~fs~d~~~~~l~s-~s~d~~i~vW--d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg 518 (1128)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+..+..+..+...+....|++ ||+.|+.+ ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 2223344 44689999999 4554 4567876665 555555677777777788889976 66666554 4678
Q ss_pred cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC
Q 001190 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1128)
..++|+++..........+.. ....|+|||+.+++.+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 899998765443333223332 45789999999988762 34677999988765433322 234578999999
Q ss_pred EEEEEECCCcEEEEEC--CCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 599 ~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+|+.++.+|.+.+|++ .++.....+..+. ..+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3566677665433 36788899884
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=144.64 Aligned_cols=226 Identities=18% Similarity=0.222 Sum_probs=172.0
Q ss_pred CCeEEEEECCCce--E-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-------CcEEEEecccc---------eeeecc
Q 001190 851 GGKISLFNMMTFK--V-MTTFMSPPPASTFLAFHPQDNNIIAIGTED-------STIHIYNVRVD---------EVKSKL 911 (1128)
Q Consensus 851 dg~i~vwd~~~~~--~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 911 (1128)
++.|.+.+++... . ...|..|.+.|..++-+|.+.++|+++..+ ..+-||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5677777665432 2 245667889999999999888999988753 24679988643 334444
Q ss_pred c-ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccc-eeEEeecCCCCCCCccEEEEcC--CCCEEEEEecCeEE
Q 001190 912 K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK-SVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVHETQLA 987 (1128)
Q Consensus 912 ~-~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~d~~i~ 987 (1128)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+. ......... .....++-+|+| ||..+++.+|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceEEEeCCCcEE
Confidence 4 5667999999999999999876 7889999999887642 222222222 125667778988 89999999999999
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCc-eEEEeCCCCCCCCcccCCCCccceE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLR-LRCYIAPSTYLSPSVLNGSQTVYPL 1065 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1128)
.||+++.+....+. ++|...|..+.|.|+-+ +|++++.||.|+|||.+.-+ .+..+. .|.-++-
T Consensus 197 ~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~------------~HsHWvW 262 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP------------GHSHWVW 262 (370)
T ss_pred EEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC------------CCceEEE
Confidence 99999877766554 45689999999999877 56689999999999987543 333333 4555667
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1066 VVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++.|+|...+++++||.|..|.+|...
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEecc
Confidence 899999888999999999999999755
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=161.96 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=182.5
Q ss_pred CCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCc--ceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~--~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
-...|+|++|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.|..+....-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567999999999 567778888999999999988765 2111 123478999999999876542358999999999999
Q ss_pred ecCCC-e-E-----EEec------CCCCCeEEEeccCCCCccEEEEEeccCcEEEE---ecCCCC-----ceeeecCCCC
Q 001190 481 ELSGR-K-L-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---LYDTMG-----SRVDYDAPGH 539 (1128)
Q Consensus 481 d~~g~-~-~-----~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w---d~~~~~-----~~~~~~~~~~ 539 (1128)
+.+.- . . .... .-...++++.|.+.. -..++.|+++|.|.-- ++.... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 93221 1 1 1111 112357888997764 4678899999998763 222222 1225566788
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
+|+++.++|-+..++..+ +|-.++||... ...++..+..+.. .+..++|||-.. .++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766655 38999999987 6667777776665 699999999764 5566778999999999765
Q ss_pred ee--eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 618 NI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 618 ~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. +...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43 3333332 346678889999999999999999999998654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=166.19 Aligned_cols=256 Identities=11% Similarity=0.053 Sum_probs=180.8
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCC----CcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+..|...|..++.+++ +.++++|+.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 37889999999998875 499999999999999998631 22333334444567899999999999 688889999
Q ss_pred eEEEEecCC---Ce-----EEEecCC-CCCeEEE-eccCCCCccEEEEEeccCcEEEEecCCCCceeee--cCCCCeEEE
Q 001190 476 LIKVWELSG---RK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (1128)
Q Consensus 476 ~i~vWd~~g---~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~ 543 (1128)
.|++.+.+- +. ......+ .+.+.++ ++........++.+..-+.|..||++.....+.+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 1111222 2334333 4433322237888888999999999887666544 345668999
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC---CCEEEEEE--CCCcEEEEECCCCe
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVN 618 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~~ 618 (1128)
++.+|.+.+++.|.. .|.+.+||++-+.++....-.....+..++.+|- ....++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999985 8889999999999888877655556666666553 34555544 57889999999997
Q ss_pred eeEEEecCCCC-----------------CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 619 ILTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 619 ~~~~~~~~~~~-----------------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
....+...... -......+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 66655433110 011122333345688899999999999987653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-13 Score=150.77 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=149.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+|....+.-+.+ .++.++.++.+.|||+..+....... .+. ..--....-+-++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~e--------r~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDE--------RCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCc--------eEEEEeEEEEeccCcEEEEEecc
Confidence 444455555556 56888889999999998776553200 000 00001222345678888999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE-EecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~-~~~~h~~~v~~~~~~ 503 (1128)
.-+.|.+|+....+ ... .+.||.+.|.++.|+.||. ++++.|+|.++++|+ .+++... ...+|..+|+.++|+
T Consensus 153 v~~~iivW~~~~dn-~p~--~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN-KPI--RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC-Ccc--eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998322 211 3779999999999999999 899999999999999 7766665 777899999999997
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+. .+++++.|.+.++|+.+..... .+..| ...|..++..++...+++++. |+.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 63 8999999999999976544433 44444 447999999888888888874 999999997653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=136.54 Aligned_cols=241 Identities=15% Similarity=0.196 Sum_probs=177.4
Q ss_pred CCCCCeeEEEeccCCC----eEEEEeCCeEEEEECCC--ceE--EEEe-----eCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 829 NLEEAVPCIALSKNDS----YVMSATGGKISLFNMMT--FKV--MTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~----~la~~~dg~i~vwd~~~--~~~--~~~~-----~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.|..+++.+.|.||.+ -|+..++..+|+|.+.. .+. ...+ ..+..+++++.|..-+.+++.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3899999999999874 23344567899999873 221 1111 235668999999988889999999999
Q ss_pred cEEEEecccce---eeecccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEE
Q 001190 896 TIHIYNVRVDE---VKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1128)
Q Consensus 896 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 971 (1128)
+-.|||++++. ....+-+|..+|..++|..++. .+||+|.||.||++|+...+-- ++.. .......+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIY--E~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIY--EDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEe--cCCCCCCcceeecc
Confidence 99999999873 3567889999999999998654 8899999999999999885421 1111 12222367888999
Q ss_pred cCCC-CEEEEE--ecCeEEEEecCCcc-cccccccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 972 NADQ-VRMLVV--HETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 972 s~d~-~~l~~~--~d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
++.. .++++- +...|.|.|++... .+..+..| .+.|+.++|.|. ...|++++.|..+.+||+.+.-..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~---- 323 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE---- 323 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC---cccccceEecCCCCceeeecCCcceEEEEeccccccc----
Confidence 8865 455552 46789999998654 45566554 899999999995 558999999999999999864331
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
......+.......|..++|++..+.-++.+..
T Consensus 324 ---~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 324 ---NGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ---CCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 111222333445567899999887787777765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=151.04 Aligned_cols=331 Identities=11% Similarity=0.080 Sum_probs=203.4
Q ss_pred EEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeE
Q 001190 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 511 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
+++-..+|.|.+.|..+.+....+.........+.|+|||+++++++ .++.|.++|+.+++.+.+++... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~----rdg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN----RDGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE----TTSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc----CCCeEEEEECCcccEEEEEecCC--Ccce
Confidence 35566789999999999888888877666556688999999999886 37899999999999999987654 4667
Q ss_pred EEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCC-----CCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcccCcc
Q 001190 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~ 663 (1128)
+++++||+++++++ .++.+.++|.++.+.+..+...+ ....+..+..+|....+++.-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 78999999999999998876532 2235667777888776665554 47776666544311
Q ss_pred ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001190 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (1128)
.... .-.
T Consensus 163 ~~~~-----------------~i~-------------------------------------------------------- 169 (369)
T PF02239_consen 163 LKVT-----------------TIK-------------------------------------------------------- 169 (369)
T ss_dssp EEEE-----------------EEE--------------------------------------------------------
T ss_pred ccee-----------------eec--------------------------------------------------------
Confidence 0000 000
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
.........|+|++++++++. .++.+-++|...... +..+..|....
T Consensus 170 -------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~ 217 (369)
T PF02239_consen 170 -------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPH 217 (369)
T ss_dssp ---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBE
T ss_pred -------------------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccccc
Confidence 112334678888988876654 356777777543221 11111121100
Q ss_pred -ccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEE----eCCCc
Q 001190 823 -NDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TEDST 896 (1128)
Q Consensus 823 -~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg----~~dg~ 896 (1128)
.......|...-.--+.+..+...++. +.+.+.+||..+.+.++++....+. .-+..+| +++++.+. ...++
T Consensus 218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADT 295 (369)
T ss_dssp ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-
T ss_pred ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCce
Confidence 000000022111111222344444332 3556778999999999999977666 7888899 88898887 45689
Q ss_pred EEEEecccceeeeccccccc-CeeEEEEcCCCCEEEEEcC--CCcEEEEECCCCcccceeE
Q 001190 897 IHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 897 v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~s~~~--Dg~i~iwd~~~~~~~~~~~ 954 (1128)
|.++|.++.+.+..+....+ .+..+.|++||+++..... ++.|.+||..+.+....++
T Consensus 296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999999988877753332 5899999999996554433 3479999999988776665
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-14 Score=160.73 Aligned_cols=261 Identities=18% Similarity=0.229 Sum_probs=177.8
Q ss_pred ccEEEEEEec--CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTN--SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~--~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..|+.+.+-+ |...+++++.||.|++|+--.... ++ ..-+.-|..-++.... ..+.-.-+.|-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---~~---~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~ 1176 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---KK---PELVTAWSSLSDQLPG-------ARGTGLVVDWQQQ 1176 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc---CC---ceeEEeeccccccCcc-------CCCCCeeeehhhh
Confidence 3455555543 445788889999999996321110 00 0011223333332221 1111134566665
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc---eeeecccccccC
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKR 917 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~ 917 (1128)
..+|.+++ -..|+|||+....+...+.. ....|+++.-+...|.++|+|..||.|++||.+.. ..+...+.|+..
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 55555555 46799999998877776653 34457887766656899999999999999998754 356778889888
Q ss_pred --eeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 918 --ITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 918 --V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
|..+.+-+.|- .|++|+.||.|++||+..........+.... ..++..+++..+++...+++|+.+.|+||++. |
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G 1334 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EYGSALTALTVHEHAPIIASGSAQLIKIYSLS-G 1334 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-ccCccceeeeeccCCCeeeecCcceEEEEecC-h
Confidence 99999998765 5999999999999999985333333222211 11245899999999999999988999999986 3
Q ss_pred ccccccccCCC----CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCc
Q 001190 995 ERIRQWTPQDA----LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 995 ~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
+.+..+..... ....+.|++|.|---++|+|+.|.+|.||..+..+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 33333222110 15677999999999999999999999999887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-13 Score=135.93 Aligned_cols=241 Identities=10% Similarity=0.112 Sum_probs=183.6
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
...+..+.|..|...|..|+.|| -++|..+.-.... ........|--+-|+ ...+.+|+...-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 34677778999999999999998 5888877643311 111223345555565 3422334443334599999 777
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---CCeEEEEEEcCCCCeEEEeeeccC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
..+..+. ...+|.++.+.. ++|+++-.+. |.|||+...+...++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 7776665 345688988843 5677666554 999999998888766543 335777777777778887643 2
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
..|.|++||+.+-+.+..+..|.+ .+.+++|+++|..|+++|+.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 377899999999999999999887 8999999999999999999887 68999999999999876555567899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccC
Q 001190 641 GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++|++.+..++|.+|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-14 Score=141.63 Aligned_cols=242 Identities=11% Similarity=0.199 Sum_probs=184.3
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEeccccee
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEV 907 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~ 907 (1128)
....+..+.|..|...|..|+....++|+.+..............|..+-|+. .++|..+.+. .+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34557777899999999999966678888876554333323334566777765 4666666543 489999988877
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE---ecC
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV---HET 984 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~---~d~ 984 (1128)
+..+. -..+|.+|.++. ++|+.+=.+ .|.|||+++-+.+.++..... ....+..+.++..+.+++.- ..|
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCc
Confidence 77665 346788998864 456655544 499999999776655543311 11345555566667788872 378
Q ss_pred eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
.|.+||+.+.+.+..+..| .+++-+++|++||.+|||+++.|+ |+|+.+.+|+.+..++... -.+.
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------~~~~ 220 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------YPVS 220 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------eeeE
Confidence 9999999999998888755 899999999999999999999997 7999999999999999432 3567
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1064 PLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+.+++|+| +..+|++.|..++|++|+++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999999 69999999999999999999876
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-16 Score=174.69 Aligned_cols=215 Identities=16% Similarity=0.238 Sum_probs=163.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC-eEEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~-~i~vW 480 (1128)
+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 77789999999999999999999999999999999998766 47799999999999999995 333343333 57899
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC----CCeEEEEEEcCCCCeEE
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~ 554 (1128)
+ ..+.+.+++.+ -.++.|+.. .+.-+.|+......+||+++.....++-.. ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9 66777776654 345667543 234445555567889999998776653222 22347788999998887
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
- || .+||++..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+...+.-.. ..
T Consensus 1247 n-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 N-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred e-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 5 43 5699999988888876553 233569999999999887 999999998887764433 67
Q ss_pred EEEcCCCCEEEE
Q 001190 635 LRFSKEGNLLAV 646 (1128)
Q Consensus 635 v~~sp~~~~l~~ 646 (1128)
+.|+..|..++.
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 888888876654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=139.65 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=179.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-..+|+|.+|++|+. .+|++-....|.||.....+.-. ..+.+..|...|++|.|+|....|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 346899999999998 77888889999999987665221 3456889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeE-----EEecCCCCCe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-----~~~~~h~~~v 497 (1128)
+|+.|..-+||....+...+....+..|+...+++.|+|.+. .+++||..+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999955555555556778999999999999999 899999999999998443322 2334567789
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEec-----CCC-------------CceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLY-----DTM-------------GSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+++.|++ ++-+|++|+.|+..|++.. +.. ....++...++.+..+.|+|+|..|+..+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999998 5579999999999999853 111 111233355678999999999999998884
Q ss_pred cCCCceEEEEeCCCCc-eeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
|..+.+-|..... .+.......- +...+.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8889888877654 3333333332 4444555433 445555555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-13 Score=144.61 Aligned_cols=575 Identities=11% Similarity=0.134 Sum_probs=345.1
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
++......|++|+-... ++|+|+.||.+++-.+.+...-... --+.+...-.....+.||.+.|.-+.|+.+.+.
T Consensus 11 iPnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CCCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccc
Confidence 34566788999999887 7899999999999998765432110 112222233334569999999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~ 500 (1128)
|-+...+|.|.||-+-.|.-.... .-....+.|.+++|..||+ .+...-.||.|.|=..+|..+..-.-...-...+
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 999999999999999888755432 1224567899999999999 6777788888877666666553222111123355
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCc-------ee----eecCCCCeEEEEEEc--------CCCCeEEEeeeccC
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKD 561 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~----~~~~~~~~i~~~~~s--------~~g~~l~~~~~~~~ 561 (1128)
.|++ |...++.+-.+|.+.++|.+..-. .. .+...+..|..+.|. ||.-.++.+..
T Consensus 163 ~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 6655 667777888889999998653211 01 111122234444442 46667777763
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---------CcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+|.+.+..-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+.+++..+. .|
T Consensus 238 -nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred -CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 666666543332222222211 145668899999999998743 2455555 35677778877665 79
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
++++|-..|-.++.+- |+.|.+=+++....- -.++ ..+.+...+.-+
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykW-gy~e-----------~TvVy~y~~~e~-------------------- 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKW-GYIE-----------ETVVYVYQKEEL-------------------- 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceE-EEee-----------eEEEEEEccCCC--------------------
Confidence 9999988887777765 678877666543110 0000 011111111000
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
-.-.|.+||.......-. .-....+++++.+--.|+.-..+|.+.-++
T Consensus 359 ---------------------p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s 406 (1189)
T KOG2041|consen 359 ---------------------PQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYS 406 (1189)
T ss_pred ---------------------cceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchh
Confidence 002234555443111100 112234566666666566666666655442
Q ss_pred ccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeC--
Q 001190 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS-- 870 (1128)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-- 870 (1128)
--. ... ++|.+.-...+...+.. .-..|+-.-..-++.+++.++...+.+|.....+....+.+
T Consensus 407 ~le-------~~~-----~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k 472 (1189)
T KOG2041|consen 407 TLE-------NRS-----RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVK 472 (1189)
T ss_pred hhh-------ccc-----ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhh
Confidence 100 000 01111100011101100 11223333333478888999988999998766554433322
Q ss_pred -CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 871 -PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 871 -~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
+...- |+- | ..-+|+.|+++.- . .+++.|..++|.+++.+ .++|..+-..|.|.-|.+...-.
T Consensus 473 ~rkegr----~h~-D--dtp~ga~d~~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l 536 (1189)
T KOG2041|consen 473 IRKEGR----FHG-D--DTPEGAQDRTLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL 536 (1189)
T ss_pred hccccc----ccC-C--CCccchhhceeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee
Confidence 11111 332 1 2235566665531 1 35677888999999887 46888888999999999988654
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC---CcccccccccCCCCCCCeEEEEEeeCCCEEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 1025 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~---~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~ 1025 (1128)
+...++. ..+..++..-+...+++.+ -|.+.+.|+. +|..+..+.... ...|+.+.|..|...+++-
T Consensus 537 ~n~y~~n-------~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAl 607 (1189)
T KOG2041|consen 537 TNSYPVN-------PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLAL 607 (1189)
T ss_pred eeccccC-------chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhh
Confidence 4333332 5678888888888888765 6777777776 344444333322 6789999999988877776
Q ss_pred ecCCcEEEEecCC
Q 001190 1026 FCDGNIGVFDADT 1038 (1128)
Q Consensus 1026 ~~dg~i~vwd~~~ 1038 (1128)
-+...++|++-.+
T Consensus 608 meKtrmyifrgnd 620 (1189)
T KOG2041|consen 608 MEKTRMYIFRGND 620 (1189)
T ss_pred hhhceEEEecCcC
Confidence 6667788877544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=138.68 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=180.5
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
-..+|+|.||++|+..+|.+..+..|.||.....+.....+++..|...|+.++|+|... .|++|+.|..-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 356999999999999999999999999999999887777788999999999999999998 799999999999999 35
Q ss_pred C---CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeEEEEEEcCCCCeEEEe
Q 001190 484 G---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 484 g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
| ++...+..+....+++.|+|.+ +.+++|+.-..|.+|-++....-.. -......|.++.|.|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3445667788999999998855 6899999999999998876554432 22334578999999999999998
Q ss_pred eeccCCCceEEEEeC-----CC-------------CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNE-----SE-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+. |+..+++.. ++ |++..++. ...+-+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 85 777887753 11 23333443 233468899999999999999999999999987765
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+...... . -+..++.|-.+...++.|.
T Consensus 240 ~~v~~~~~~-~-lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 240 ERVQSVATA-Q-LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hhccchhhc-c-CCceeeEeecCCceeecCC
Confidence 23332221 1 3556677765544444443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-13 Score=148.84 Aligned_cols=319 Identities=11% Similarity=0.135 Sum_probs=200.4
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
+++.|.+.|..+.+.+.++..... .-..+.+++||+++++++.||.|.++|+.+++.+..+.... ...++++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 488999999999999999987544 34457899999999999999999999999999999987643 35889999999
Q ss_pred CEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 642 NLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 642 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
++++++. ..+.+.++|..+. +.++.+......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-----------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeeccccccc----------------------------------------------
Confidence 9998776 5899999998775 333222111000
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-cceeEeeeccccCCC
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQN 799 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~ 799 (1128)
. .....++.++..++....+++.-. .+.|.+-|+....
T Consensus 123 --------------------------------------~-~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-- 161 (369)
T PF02239_consen 123 --------------------------------------V-DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-- 161 (369)
T ss_dssp --------------------------------------T-TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS--
T ss_pred --------------------------------------c-cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc--
Confidence 0 002345667777787775555444 4666555543210
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC----CCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~ 873 (1128)
.+....+ ..........|+|++++++++. ++.|.++|..+++.+..+.. |..
T Consensus 162 -------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 162 -------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp -------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred -------------------ccceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 0000001 1344566789999999988775 67899999999988776542 333
Q ss_pred CeeEEEEcCC---------CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEE----cCCCcEE
Q 001190 874 ASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS----GADAQLC 940 (1128)
Q Consensus 874 ~v~~l~~s~~---------d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----~~Dg~i~ 940 (1128)
+...+ .+|. .+...++.-....+.+||..+.+.++++....++ .-+..+|+++++... ...++|.
T Consensus 220 ~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 220 PGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp TEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred ccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEE
Confidence 33222 1221 2223322333345667899999999999877666 788889999999987 4458999
Q ss_pred EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcccccccc
Q 001190 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWT 1001 (1128)
Q Consensus 941 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~~~~~~~ 1001 (1128)
++|.++.+....+... .+ ..+..+.|++||+++.++. ++.|.+||..+.+.+..+.
T Consensus 298 viD~~tl~~~~~i~~~--~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 298 VIDKKTLKVVKTITPG--PG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEECCGTEEEE-HHHH--HT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEECcCcceeEEEecc--CC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999997543332211 11 2377899999999887752 4489999999999887765
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=151.20 Aligned_cols=199 Identities=14% Similarity=0.214 Sum_probs=158.7
Q ss_pred eEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc
Q 001190 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 913 (1128)
..++|++||..|++++ ||++|||+..+...+.....|...|.++.|+| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999999888888889999999999999 99999999999 999999999977665542
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCe
Q 001190 914 --HQKRITGLAFSTSL-----NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 985 (1128)
Q Consensus 914 --h~~~V~~l~~s~d~-----~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~ 985 (1128)
-......+.|+.|+ ..++....-+.|+.||+.....-......... .....+++++.++||++++.|+ +|.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCc
Confidence 22346678888887 33444455577888877654431111111111 1115799999999999999986 999
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
|.||+..+.+.+.... ++|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998887766544 45689999999999999999999999999888765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-12 Score=128.36 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=170.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccc--eeEEEEecCCCeEEEEEecCC------CeEEE
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD------KLIKV 479 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~fs~d~~~~~l~s~s~d------~~i~v 479 (1128)
...+++|+.|...+++|..+| .+||+.+--+... .-.-+.+. +.-+-| -.+.+.| .|+.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laL-VGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLAL-VGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEE-ecCCCCCCCCCceEEE
Confidence 445599999999999998877 8999987532211 11112222 222223 2333233 34433 57999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCC--CeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPG--HWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~--~~i~~~~~s~~g~~l~~ 555 (1128)
|| ...+++..+. ...+|.++.+.+ ..|++. .++.|.+|.... .+....+.... ....+++-..+-..|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 99 8888888887 567899999854 244443 568999998863 34444433322 23444444444445555
Q ss_pred eeeccCCCceEEEEeCCCCce--eeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeEEEecCCCCCCc
Q 001190 556 CGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
-+. ..|.|+|-|+...+. ...+..|.. .|.|++++-+|..++++|..|+ |||||..+|..+..+........|
T Consensus 154 Pg~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PGF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 443 578999999887665 467777876 8999999999999999999887 799999999999998876666789
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+++|||+..+|+++++.|++.|+.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-14 Score=160.67 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=136.6
Q ss_pred EecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-------ceeeecCCCCeEEEEEEcCCCCe
Q 001190 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 480 Wd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|+..|..+..+..|...|..++.+. +++.++++|+.||+|++|+.+... ...++...+..+.++.+.+.|+.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8889999999999999999988865 355899999999999999986532 23455556778999999999999
Q ss_pred EEEeeeccCCCceEEEEeCCCC-------ceeeEeccccCCc-eeEEEEeCC-CC-EEEEEECCCcEEEEECCCCeeeEE
Q 001190 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDTT-QN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~s~dg~i~iwd~~~~~~~~~ 622 (1128)
+++++ .||.|++.++.-- ...+....+..+. +..-+|... +. .++.+...+.|..||.........
T Consensus 1113 ~Av~t----~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVST----KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEc----CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99986 5999999988751 1122222222222 333344332 23 677888899999999998887777
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++..-..+.|++++.+|.+.+++.|+..|.+.+||++-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 766555568999999999999999999999999999765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-11 Score=125.08 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=106.5
Q ss_pred CcccEEEEEEecCcceEEEeeccc-eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+.+.|.-..+..++..++.+..|| .+-+++... ++... +. ..-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~----------------------~e~kr--~e--~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG----------------------GEVKR--IE--KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCC----------------------ceEEE--ee--CCccceEEEEEcC
Confidence 444455555556666678888887 777776543 22111 11 1456799999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEecccceeeeccccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|+++|+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 57899999999988776666777899999999 999999988776 68999999888654332 333
Q ss_pred CeeEEEEcCCCCEEEEEc
Q 001190 917 RITGLAFSTSLNILVSSG 934 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~ 934 (1128)
.=.+-+|.||+++|.--+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 445778999999877654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-14 Score=159.29 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=147.6
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeecc---CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.....|...|.+.+|||||+++ +..+.+ ..|.+||+.+++.... ..+.+| ..+++|
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~w 255 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAF 255 (429)
T ss_pred eEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeE
Confidence 3344588899999999999955 544432 4799999988764221 013333 346899
Q ss_pred ccCCCEEEEEe-CCCeEEEE--EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEE
Q 001190 415 SPDGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1128)
Q Consensus 415 spdg~~las~~-~d~~i~vw--d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~ 489 (1128)
||||++|+.++ .+|.+.|| |+.+++. + .+..|...+....|+|||+. +++++..++...||+ ..+.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence 99999998875 67766665 5555543 2 35567778899999999995 344455678888888 44444443
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
+ .+.+ ....|+| +|+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++. ++...+|
T Consensus 331 l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l 398 (429)
T PRK01742 331 V-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVL 398 (429)
T ss_pred e-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEE
Confidence 4 3443 3456755 678888877765 55599877655432222 23456789999999999874 4445555
Q ss_pred eC--CCCceeeEeccccCCceeEEEEeCC
Q 001190 570 NE--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1128)
Q Consensus 570 d~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1128)
.+ .+|+.++.+..+.. .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 54 35777888877665 6777888874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=148.61 Aligned_cols=297 Identities=15% Similarity=0.193 Sum_probs=215.6
Q ss_pred CCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
..|.+.|..+.|...|..+++++.|..+.+||+..... ......+ |...|....|-
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SG--H~~NvfQaKFi 194 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESG--HCNNVFQAKFI 194 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccc--cccchhhhhcc
Confidence 34999999999999999999999999999999864332 1111222 66666666666
Q ss_pred c--CCCeEEEEe-CCeEEEEECC-CceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc---
Q 001190 841 K--NDSYVMSAT-GGKISLFNMM-TFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL--- 911 (1128)
Q Consensus 841 ~--dg~~la~~~-dg~i~vwd~~-~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--- 911 (1128)
| +.+-+++.+ ||.+++=.+. ++.+ ...+..|.+.|..++.-|+...-+.+++.|+.+.-+|+..+.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 5 334556655 8998887664 3322 34456799999999999988888999999999999999876443322
Q ss_pred ccccc---CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCccc------ceeEEeecCCCCCCCccEEEEcCCCCEE-EE
Q 001190 912 KGHQK---RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKR------KSVTIHIPAGKTPTGDTRVQFNADQVRM-LV 980 (1128)
Q Consensus 912 ~~h~~---~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~v~~s~d~~~l-~~ 980 (1128)
+.+.. ....++..|... .+++++.|..+++||...-... ..++.+.........|++++|+.++.-| ++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 22333 456788888765 8899999999999998653322 2222222223444789999999766554 45
Q ss_pred EecCeEEEEecCC--c----------ccccc-cccCCCCCCCeEEEEE-eeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 981 VHETQLAIYDASK--M----------ERIRQ-WTPQDALSAPISCAVY-SCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 981 ~~d~~i~v~d~~~--~----------~~~~~-~~~~~~h~~~v~~l~~-s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-.|..|+++.-.- | ..+.. +.+|.+ ...|..+-| -|...|+++|+..|.|.||+-.+++.+..+.
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 5789999995432 2 11222 555554 556777765 5788999999999999999999999988888
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++..-|.|+.-+|. -.+|+++|-|..|+||...+.+
T Consensus 434 ------------gDr~VVNCLEpHP~-~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 ------------GDRHVVNCLEPHPH-LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ------------cccceEeccCCCCC-CchhhccCCccceeeecCCccc
Confidence 33446788998995 6789999999999999885554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=141.57 Aligned_cols=246 Identities=14% Similarity=0.164 Sum_probs=174.2
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEE------EEeeCCCCCeeEEEE-----cCCCCCEEEEEeCCCcEEEEe
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVM------TTFMSPPPASTFLAF-----HPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~------~~~~~~~~~v~~l~~-----s~~d~~~lasg~~dg~v~iwd 901 (1128)
.++...++-.|.+|+..-...+.+|+...+..+ +.+++. ..+|=+| .+ ++--|..|-.-|.|++.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATP-KGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCC-CCcceEEeeccCceEEec
Confidence 455666677888888887888999988753321 122221 1223333 33 555677888899999998
Q ss_pred cccceeeeccc----ccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-----------ccceeEEeecCCCC---
Q 001190 902 VRVDEVKSKLK----GHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWE-----------KRKSVTIHIPAGKT--- 962 (1128)
Q Consensus 902 ~~~~~~~~~l~----~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~--- 962 (1128)
....+..+.+. -....|+++.|-|.+. .++.+-.+|.+.+||..--. .-..+.+.....+.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 77633222121 1236899999998655 44456678999999763210 00111111111110
Q ss_pred --------CCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEE
Q 001190 963 --------PTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033 (1128)
Q Consensus 963 --------~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~v 1033 (1128)
...+...+|+|||++||+. .||.++|+|..+.+.+..+.-- -+...|++|||||+||++|++|--|.|
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEE
Confidence 1578899999999999985 5999999999988877665543 678999999999999999999999999
Q ss_pred EecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC-----------------------------------------
Q 001190 1034 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL----------------------------------------- 1072 (1128)
Q Consensus 1034 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------------------------------- 1072 (1128)
|.+...+++++-. +|..+|..|+|.|-
T Consensus 359 wSf~erRVVARGq------------GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 359 WSFEERRVVARGQ------------GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred EEeccceEEEecc------------ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 9999999998866 88889999999721
Q ss_pred ------CCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1073 ------EPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1073 ------~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
....|.+.+.|-++++||+.+...
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhc
Confidence 123578999999999999998764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=131.26 Aligned_cols=261 Identities=11% Similarity=0.115 Sum_probs=164.0
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....|++++|-|.+...++.+..+.|.+|.....-- ... .++ .. +......+...+| .+|+++.+.+|
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln-----~~r--~~~---~~-s~~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN-----ANR--NIR---MM-STHHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCcccc-----ccc--ccc---cc-cccchhheeCCCC-ceeeEEEEcCC
Confidence 345688999999877677666777899997653210 000 000 00 0011112222224 78999999999
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
|..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..+.-|+..++|......-.....--++.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 56799999999988766655677899999999 9999999999999999955433222222334469999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccce-----------eEEe-------ecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKS-----------VTIH-------IPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~-----------~~~~-------~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
..|+|+|++|+.+.. |.-++|.+...++-.. .... ........++.+++|+|.|.+|++.-
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999997665442 3345555432111100 0000 00011126788999999999999964
Q ss_pred c---------CeEEEEecCCcccccccccCCCCCCCeEEEEEee---CCCEEEEEecCCcEEEEecC
Q 001190 983 E---------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC---NSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 983 d---------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
. ..|.+||....-.+...............++|+| +|.+|..+=.-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 2366777665444332211111123345666766 56677677677777777653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=148.53 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=156.0
Q ss_pred eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC---CCeEEEEEccCCCcceec
Q 001190 368 EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQH 444 (1128)
Q Consensus 368 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~ 444 (1128)
.|.+||.+.+... .+..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 180 ~l~~~d~dg~~~~--------------------~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCE--------------------EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 6888887754432 14456778999999999999997642 4579999998876432
Q ss_pred eeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cCcEE
Q 001190 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIK 521 (1128)
Q Consensus 445 ~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~ 521 (1128)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+. ++...
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCce
Confidence 2223334557899999995 233444454 58899943334455555555677788876 6677766654 45556
Q ss_pred EE--ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCE
Q 001190 522 AW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1128)
Q Consensus 522 ~w--d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1128)
+| ++..+. ...+...........|+|||++++..+.. ++...|.+||+.+++... +.... ......|+|||+.
T Consensus 313 Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCCE
Confidence 66 554433 23344444456678999999999887642 235678999998887543 33221 2345789999999
Q ss_pred EEEEECCCc---EEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 600 FLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 600 l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
|+.++.++. ++++++. |.....+..+ ...+...+|+|
T Consensus 388 i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEEEEcCCCceEEEEEECC-CCCeEECccC--CCCcCCcccCC
Confidence 999887764 6777874 4444445433 33577888887
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-10 Score=119.48 Aligned_cols=413 Identities=12% Similarity=0.110 Sum_probs=236.6
Q ss_pred CcccccCCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEE----ee--ccCeEEEEEccCCceeccccccccc
Q 001190 316 EEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----GS--SNGEITLWELAMRDRLVSKPFKIWD 389 (1128)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~----gs--~d~~i~iwd~~~~~~~~~~~~~~~~ 389 (1128)
.++.|+...+ +|...-......+...|-+-|+...|+|||+.++.+ |+ ..+.+.+.+.+.|+..+.
T Consensus 51 D~IiFt~~Dd-lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------- 122 (668)
T COG4946 51 DRIIFTCCDD-LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------- 122 (668)
T ss_pred cEEEEEechH-HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-------
Confidence 3466665555 899888888888888899999999999999965442 22 234566666677765431
Q ss_pred ccccCccccceeccCCCcceEE-EEEccCCCEEEEEeCCCe----EEEEEccCCCc-ceeceeecccccceeEEEEecCC
Q 001190 390 MAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPN 463 (1128)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~ 463 (1128)
++-| ...+. .-|+|||+.|++...-.- -.+|.++.... .. .-.-++.+.+.+- ||
T Consensus 123 -----------TyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg 183 (668)
T COG4946 123 -----------TYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DG 183 (668)
T ss_pred -----------EEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CC
Confidence 1122 33344 459999999988754322 23333332111 11 0123445555553 44
Q ss_pred CeEEEEEecCCC------------eEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC
Q 001190 464 KLLCVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (1128)
Q Consensus 464 ~~~~l~s~s~d~------------~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 529 (1128)
. ++.|-.-- .=++|- ..|+....+..-.+.|.+-.+. .++..+....||.=.+|..+-.+
T Consensus 184 ~---ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 184 I---IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred E---EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCC
Confidence 3 33332211 124565 3332333332222223322111 11233334445554555443332
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc---c---cCC-ceeE---E-EEeC-CC
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKK-SNGV---V-QFDT-TQ 597 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~~---~-~~~~-~~ 597 (1128)
.-......-....+=..+.||+.++... .|.|+++|..+.++...--+ . ... .+.- + .|++ +|
T Consensus 258 kDlrrHTnFtdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G 332 (668)
T COG4946 258 KDLRRHTNFTDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG 332 (668)
T ss_pred chhhhcCCchhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC
Confidence 2221111111233444578999998864 56799999887654332111 1 000 0111 1 1332 56
Q ss_pred CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC-cEEEEEcccCccccccccCCccccc
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEAL 676 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1128)
++++..|. |...|.+...+-.++.- +...|.-..+..+++-++.|..|| .+-|++..+++. +.+
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~-------- 397 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRI-------- 397 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--EEe--------
Confidence 77777775 67777776655544432 223466677777888889999988 888998877621 110
Q ss_pred cCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEE
Q 001190 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1128)
Q Consensus 677 ~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (1128)
T Consensus 398 -------------------------------------------------------------------------------- 397 (668)
T COG4946 398 -------------------------------------------------------------------------------- 397 (668)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
...-+.|.++..+++|+.++++.....+.+.|+++ |......- ...+-|+.
T Consensus 398 ----e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn----------------------gnv~~idk---S~~~lItd 448 (668)
T COG4946 398 ----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN----------------------GNVRLIDK---SEYGLITD 448 (668)
T ss_pred ----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC----------------------CCeeEecc---cccceeEE
Confidence 11445678888889998888877776666665543 32211111 14566999
Q ss_pred EEeccCCCeEEEEe-CC----eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 837 IALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
++|+|+++++|.+- +| .|++||+.+++...... ....-.+-+|.| |+++|..-+
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 99999999999986 54 59999999888765433 333446778888 888776544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-09 Score=125.72 Aligned_cols=514 Identities=14% Similarity=0.131 Sum_probs=282.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEE----EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
..+.|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 544432 11 2233466899999999999 56666667888887
Q ss_pred ecCCCeEEEecCCCCC-----eEEEeccCCCCccEEEEEeccCcE-E-EEecCCC-CceeeecCCCCeEEEEEEcCCCCe
Q 001190 481 ELSGRKLFNFEGHEAP-----VYSICPHHKENIQFIFSTAIDGKI-K-AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~~~dg~i-~-~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
..+-.++....-+... -.++-|-... .++ -|+..+.. + +=+.... .....+. ....-..++|-.||++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF--~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKE-TQF--HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCccc-Ccc--CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 7666666555433221 1122221110 000 01100000 0 0000000 0001112 3335578999999999
Q ss_pred EEEeeeccC-C-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCeeeEEEecC-
Q 001190 553 LFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE- 626 (1128)
Q Consensus 553 l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~- 626 (1128)
+++.+.... + ...+++|+-+ |.+..+-..-. +.-.+++|-|.|+.|++... ...|.+|..+. -.-..+...
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCC
Confidence 998876322 2 5789999965 66555544322 24567899999999988763 45677777543 333333322
Q ss_pred -CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecc
Q 001190 627 -GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1128)
Q Consensus 627 -~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1128)
.....|..+.|++|+..||+...|. |.+|-..+-.=.+++. +.|
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe--------------i~~-------------------- 345 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE--------------IRF-------------------- 345 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE--------------EEc--------------------
Confidence 2344789999999999999987654 9999876541111100 000
Q ss_pred cCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCc-ceEEEeec
Q 001190 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGS 784 (1128)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~ 784 (1128)
+ ....+..+.|+|.. ..|...+.
T Consensus 346 ----------------------------------------------------~----~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 346 ----------------------------------------------------S----SSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred ----------------------------------------------------c----CCCCCCceEECCCCCCEEEEEec
Confidence 0 11122236666643 33555555
Q ss_pred cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEeCCeEEEEECCCce
Q 001190 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFK 863 (1128)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~ 863 (1128)
+|.+..+++. |+...+.. .+| |...+++.++.++.+-.+...-
T Consensus 370 ~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 370 NGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred CCcEEEEEEE------------------EEEEecCC------------------CCccCceEEEEEeCCeEEEecccccC
Confidence 5666665542 22211110 111 2233444445557766655432
Q ss_pred E-----EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee--------eccc----------ccccCeeE
Q 001190 864 V-----MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--------SKLK----------GHQKRITG 920 (1128)
Q Consensus 864 ~-----~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~V~~ 920 (1128)
. ...+. -...|.+++|++ ++..+|+-..||.|.+|........ ..+. .-...+..
T Consensus 414 VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 414 VPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred CCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 1 12222 356799999999 6766888999999999986543211 1111 12345788
Q ss_pred EEEcCCCCEEEEEcCC---CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC-EEEEEecCeEEEEecCCccc
Q 001190 921 LAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RMLVVHETQLAIYDASKMER 996 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~d~~i~v~d~~~~~~ 996 (1128)
++|..+...++....+ ..+.++++...+......... . ....+..+...++.. .++-..+|.+..++......
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESST-E--VDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEe-c--cCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 8888887766665554 578888885433211111111 0 113444444555554 33335588888666554332
Q ss_pred cc-ccccCCCCCCCeEEEEEeeCCC---EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 997 IR-QWTPQDALSAPISCAVYSCNSQ---LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 997 ~~-~~~~~~~h~~~v~~l~~s~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
.. .+.. ...-..+....+.. .++.-+..|.+++ .+..++ . .+++++.+.
T Consensus 569 ~~~~fp~----~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la----------------~--~~tSF~v~~- 621 (928)
T PF04762_consen 569 QIVKFPQ----PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA----------------S--NCTSFAVTD- 621 (928)
T ss_pred ccccCCC----CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe----------------c--CCceEEEEc-
Confidence 22 2221 12222333333322 3333334444443 222222 1 124454443
Q ss_pred CCCEEEEEECCCcEEEEcCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+|+.......+++.++.
T Consensus 622 --~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 622 --SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred --CEEEEEecCceEEEEECc
Confidence 456666667889999988
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-12 Score=127.86 Aligned_cols=283 Identities=14% Similarity=0.184 Sum_probs=185.0
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCEEEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 424 (1128)
.+..++|++.-- -+|++..|-.|+|||-.. +.... +-......|+|++|-|. ++.|+.|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 478899998543 467888999999999665 22110 11123558999999995 4567777
Q ss_pred eCCCeEEEEEccCCCcc-e----------eceeecccccceeEEEEecCCCeEEEEEecC-CCeEEEEe-cCCCeEEEec
Q 001190 425 FTKHLIQLYSYAGSNDL-R----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~-~----------~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd-~~g~~~~~~~ 491 (1128)
+..| |.+|..+..-.. + +...-.+| .+|+++.|.+||. .+++++. |..|.||| .+|..+.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7665 899987532111 1 11123355 6899999999999 6777765 56899999 6676654444
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
..-+.+.-+.|+| |+.+|+.+.-|+..++|+....--........+.|...+|+|+|++|+.... +...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 4556788899977 6789999999999999965443333334444558999999999999887764 2333332211
Q ss_pred CC--Cc-----------eeeEec------c--ccCCceeEEEEeCCCCEEEEEECC--------CcEEEEECCCCeeeEE
Q 001190 572 SE--GT-----------IKRTYA------G--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTS 622 (1128)
Q Consensus 572 ~~--~~-----------~~~~~~------~--~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 622 (1128)
.. +. ++..+. + .-.+...+++|.|.|.++++.-.. +.|.+||....-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 00 111111 1 012357789999999999986533 3466788766544443
Q ss_pred E--ecCCCCCCcceEEEcC---CCCEEEEEEcCCcEEEEEc
Q 001190 623 T--DAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 623 ~--~~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~ 658 (1128)
. ...++. ....+.|+| ++.+|.++-..|.+.-|.+
T Consensus 391 s~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 391 SYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 3 111221 245677776 6778888888888877765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=146.26 Aligned_cols=239 Identities=15% Similarity=0.160 Sum_probs=165.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+.|+|++|+.||. +|++||.|-.+.|||.-..+.++ .+-.||.+.|.|+.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCCCe
Confidence 6999999999999999 89999999999999998766654 24789999999999999 678
Q ss_pred EEEEEeCCCeEEEEEccCCC-------cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC-CCeEE--
Q 001190 420 YVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLF-- 488 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~-g~~~~-- 488 (1128)
.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+| .+ -.+-.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 89999999999999998521 12233346789999999999999965 799999999999999 33 11111
Q ss_pred -------EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCeEEEEE-EcCCCCeEEE
Q 001190 489 -------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTML-YSADGSRLFS 555 (1128)
Q Consensus 489 -------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~~-~s~~g~~l~~ 555 (1128)
.+...--...++.++|.. ..+|++|+.|-..++||.+.......-. .......|+. |+|.+-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---- 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---- 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----
Confidence 111122245678888874 4799999999999999964322111100 0011111221 222221
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.. .++.+ .... ...+-+.|+|+|..|++.-..-.|+++|+..++....+.
T Consensus 263 kn----~~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 KN----SQGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cC----ccccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 01100 0000 124557899999887776666689999998887665543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=148.33 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=150.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+|+... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 359999999886543 3334455678999999995 344677788777
Q ss_pred EEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 479 vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
+|. ..+.....+..+.+......|++ ||+.|+..+. +|...+|.++... ....+...+.......|||||++|+
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 55555667766666666777866 6677765554 5677777665322 2222223333445678999999998
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEEEECCCCeeeEEEecCCCCCC
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
..+.. .+...|.+||+.+++........ ......|+|+++.|+.++.++ .+++.+. ++.....+..+. +.
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GD 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CC
Confidence 77632 23457999999888765433221 235678999999998887543 3566666 455555554332 25
Q ss_pred cceEEEcCC
Q 001190 632 LPRLRFSKE 640 (1128)
Q Consensus 632 v~~v~~sp~ 640 (1128)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788773
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-12 Score=146.90 Aligned_cols=222 Identities=12% Similarity=0.039 Sum_probs=152.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeC---CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe--
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~-- 476 (1128)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5668889999999999999998764 4689999999886432 4566777889999999995 3456666665
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777854555566776766667778866 6677776653 33 5777777654433 333334456778899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC------CcEEEEECCCCeeeEEEecCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~ 627 (1128)
+..... .+...|.+||..++.. +.+... ..+....|+|||+.|+..+.+ ..++++|+.++.. ..+...+
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~ 423 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG 423 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC
Confidence 887632 2346789999865543 333221 135668899999998876542 3688888876654 3333222
Q ss_pred CCCCcceEEEcC
Q 001190 628 GLPNLPRLRFSK 639 (1128)
Q Consensus 628 ~~~~v~~v~~sp 639 (1128)
.+...+|+|
T Consensus 424 ---~~~~p~Wsp 432 (435)
T PRK05137 424 ---DASDPAWSP 432 (435)
T ss_pred ---CccCcccCC
Confidence 356677776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-09 Score=126.72 Aligned_cols=572 Identities=11% Similarity=0.117 Sum_probs=305.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEE----EccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLW----ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+.|.++.|-++.. -++.+..+|.|.+. +..+.... ....-+.+|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 456899999999987 45777889999999 44443322 133456799999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCeE--------
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~~-------- 487 (1128)
..||..+.++++.+.+- +-+.+.. ..+.++ |.. ..++.|..+.=.-+. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~-~fd~i~E-------------~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTR-DFDPISE-------------VPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEec-cceEEEE-------------eecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 99999999998877642 2222211 111111 000 133333221111111 112210
Q ss_pred ------EEecCCCCCeEEEeccCCCCccEEEEEec---c---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 488 ------FNFEGHEAPVYSICPHHKENIQFIFSTAI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 488 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
..+. +...-..++| .+||.++++.+. . ..+|+|+-+ +....+...-.+--.+++|-|.|++|++
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1122 3333445666 668999998875 2 579999753 3333333333334467899999999998
Q ss_pred eeeccCCCceEEEEeCCCCceeeEecc---ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE--EEecCCCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAG---FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAEGGLP 630 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~ 630 (1128)
... ..+...|.+|.- +|-.-..|.. .....+..+.|++++..|+..-.|. |.+|...+..... .+..... .
T Consensus 274 ~q~-~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEE-cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence 875 333566777764 3433333332 2334688899999999999977665 9999998876433 3332222 2
Q ss_pred CcceEEEcCC-CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
.+..+.|+|. ...|.+.+.+|.+..++..-..........+ -.++..--||..+
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~--------D~g~vaVIDG~~l----------------- 404 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPN--------DNGTVAVIDGNKL----------------- 404 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCcc--------CceEEEEEeCCeE-----------------
Confidence 4556999994 5567777777887766543210000000000 0111222233222
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
.+-.+....-+.......+. ....|..++|++++..+++...||.+.
T Consensus 405 -----------------------------llTpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 405 -----------------------------LLTPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred -----------------------------EEecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 11111111112222111111 346899999999999899999999999
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC----CeEEEEECCCce--
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG----GKISLFNMMTFK-- 863 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----g~i~vwd~~~~~-- 863 (1128)
+|.+................ +... ........ .....+..++|..+..+++.... ..+.+++....+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 452 IYEWDLKNMWSVKPPKLLSS---ISLD--SMDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred EEEecCCCcccccCcchhhh---cccc--cccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 99866543211000000000 0000 00000000 13456788999888877776653 358888774332
Q ss_pred -EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-eecccccccCeeEEEEcCCC--CEEEEEcCCCcE
Q 001190 864 -VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSL--NILVSSGADAQL 939 (1128)
Q Consensus 864 -~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~--~~l~s~~~Dg~i 939 (1128)
.......-.+.+..+...+ +...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~L 603 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRL 603 (928)
T ss_pred eeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEE
Confidence 2333333344555555555 444466677799888666554322 12333222222222222222 144444444544
Q ss_pred EEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC-CcccccccccCCC--CCCCeEEEEEe
Q 001190 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS-KMERIRQWTPQDA--LSAPISCAVYS 1016 (1128)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~-~~~~~~~~~~~~~--h~~~v~~l~~s 1016 (1128)
.+ +. .. +. ..++++++. +..++++.....+++.++. ............. +...+..+
T Consensus 604 y~---n~-~~-----la-------~~~tSF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V--- 663 (928)
T PF04762_consen 604 YA---NS-RL-----LA-------SNCTSFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV--- 663 (928)
T ss_pred EE---CC-EE-----Ee-------cCCceEEEE-cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---
Confidence 43 11 11 11 455666663 3334445567889999887 1111111111000 01222332
Q ss_pred eCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 1017 CNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1017 ~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
.-|..|+++--...=.|..+..|.+...
T Consensus 664 ERGsriVt~vp~~~~vVLQmPRGNLEtI 691 (928)
T PF04762_consen 664 ERGSRIVTAVPSDTSVVLQMPRGNLETI 691 (928)
T ss_pred ccCCEEEEEeCCCceEEEEcCCCchhhh
Confidence 3466777766555666778888776443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=147.79 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=151.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 44444323333334457778999999999996554432 24579999998876432 222
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCCeEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~~i~vW 480 (1128)
..+.+..++|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+ .++...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEE
Confidence 23335568999999999865 3344 58899999876433 4445567889999999994 54444 34444555
Q ss_pred --ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 --d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|..+.....+..+........|+| ||++|+..+.+ ..|.+||++++... .+.. ........|+|||+.|+.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence 544444455544444556677766 66777766543 35788888776543 2332 223456789999999998
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+.++ +...+.++++ +|+....+.++.. .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87532 2445788887 4555566766554 566677776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-13 Score=140.00 Aligned_cols=118 Identities=22% Similarity=0.398 Sum_probs=106.3
Q ss_pred CCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44688999999999999998 99999999999999988888888999999999 99999999999999999999999999
Q ss_pred cccccccCeeEEEEcC-----------------------------------CC-------------CEEEEEcCCCcEEE
Q 001190 910 KLKGHQKRITGLAFST-----------------------------------SL-------------NILVSSGADAQLCV 941 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~-----------------------------------d~-------------~~l~s~~~Dg~i~i 941 (1128)
.-.||..-|..|+|.| ++ -++.|++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25778899999999
Q ss_pred EECCCCcc
Q 001190 942 WSIDTWEK 949 (1128)
Q Consensus 942 wd~~~~~~ 949 (1128)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99986543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-12 Score=147.31 Aligned_cols=238 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCccee
Q 001190 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 443 (1128)
..|.|||...+... .+..|...+.+.+|||||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46888987644321 155677789999999999999988743 469999998876432
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCc-
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~- 519 (1128)
+..+.+...+.+|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|++ ||+.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344455668899999995 334555555 69999944444556666665556778866 667777665 4455
Q ss_pred -EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC
Q 001190 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 520 -i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1128)
|.++++..+.. ..+...+......+|+|||+.++.... .++...|.+||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 55555554433 233333444557899999999988753 223457999999888765332221 234568999999
Q ss_pred EEEEEEC---CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 599 ~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
+++..+. .+.|++++...+ ....+.... ..+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9888765 346888888554 344443322 2466777776
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=131.56 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=133.4
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC---------HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHH
Q 001190 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1128)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1128)
...+|+.|||++||...||.++|..+.+|+|+... -..+|.+|..|+-++|++.++.+.+..-++... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 45789999999999999999999999999999772 568899999999999999999985443333333 89
Q ss_pred HHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcc-cCCchHHHHHHHHHHHhhcc
Q 001190 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSK-YGDTKTARGIMLIELKKLIE 152 (1128)
Q Consensus 74 ~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~~~~r~~l~~~l~~~~~ 152 (1128)
|.+++|+++||+..+..++|+.|++.++.|+...+++.+++|...|.+..++.....+- +-=....|.+++..++..|-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888899999998877655543222110 00134568899999888774
Q ss_pred cCcccccccCCCCCChHHHHHHHHHHHHHH
Q 001190 153 ANPLFRDKLAFPTLKSSRLRTLINQSLNWQ 182 (1128)
Q Consensus 153 ~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1128)
...= . -...+|..|++.-++.|
T Consensus 183 ~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 183 ASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHhc---c-----cccchHHHHHHHHHHHH
Confidence 4220 0 01347888887666666
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=141.96 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=217.4
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+...+.|+.+|++ |+.|+..|.|-.+||.++++..... -...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 5678899999995 5667789999999999998875321 234788899999999998874
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
...+.|||-.. ..+.. +..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-.|
T Consensus 190 -K~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 55789999765 33442 3333 4699999999877 899999999999999 89999999988888888888766
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1128)
- ...+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.|. |..++|||++....+.++....
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 4 468899999999999999888888888899999999999999999999985 8999999999888776666522
Q ss_pred CCceeEEEEeCCCCEEEEEECCCcEEEEEC-CC--CeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
....+++|..| +++++....|.||.- -. +..-..+-.|.-...|..+.|.|-...|-+|...|.-.+.-.-.|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45667787644 555566668999942 22 122222222333347899999998778888887776666544444
Q ss_pred ccccccccC
Q 001190 662 LRSLRAVEN 670 (1128)
Q Consensus 662 ~~~~~~~~~ 670 (1128)
...+..++.
T Consensus 412 ePN~Ds~e~ 420 (545)
T KOG1272|consen 412 EPNYDSLED 420 (545)
T ss_pred CCCcchhcc
Confidence 443333333
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=145.14 Aligned_cols=237 Identities=18% Similarity=0.147 Sum_probs=150.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+.+.+.+.+|||||+.++.+...+ ..|.+||+.+|+... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 5554443333444556888999999999999554443222 369999998886532 222
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..|.+.+....|+|||+. +++++..++...+|.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3445678999999998874 567777667655 4443 33 35556666778899999995 233444456667776
Q ss_pred --cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 482 --~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
..+.....+..+.......+|+| +|++|+..+.++ .|.+||+.++..... .. ........|+|||+.|+..
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEE
Confidence 34433433332333344567766 678888776554 699999877654432 22 2334678999999999988
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
...+ +...+++.+. +++....+..+.+ .+...+|+|
T Consensus 389 ~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 389 TQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 7532 3455777777 4555555554333 455566665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-11 Score=122.74 Aligned_cols=237 Identities=15% Similarity=0.219 Sum_probs=167.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCC--CeeEEEEcCCCCCEEEE-EeCC------CcEEEEec
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIAI-GTED------STIHIYNV 902 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~las-g~~d------g~v~iwd~ 902 (1128)
....+++|..|...+++|.+...+||+++-.+.......+.+ .+..+-|- .++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999976544333222222 23333332 234443 3332 47999997
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-CcccceeEEeecCCCCCCCccEEEEcC--CCCEEE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDTRVQFNA--DQVRML 979 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~ 979 (1128)
...+++.++. -..+|.+|.+.++ .|+..- .+.|+||.... -+++..+.... .+... ++..| +..+|+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~----NPkGl--C~~~~~~~k~~La 152 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS----NPKGL--CSLCPTSNKSLLA 152 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc----CCCce--EeecCCCCceEEE
Confidence 6777777776 5688999999876 455444 56899999984 33333322221 11222 33344 333333
Q ss_pred E-E-ecCeEEEEecCCcccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCc
Q 001190 980 V-V-HETQLAIYDASKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 980 ~-~-~d~~i~v~d~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
. | .-|.|+|-|+...+.- ..+ .+|.+.|.|++++.+|..+||++..|+ |+|||..+|+.+..++..
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I---~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG------ 223 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSII---NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG------ 223 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEE---EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC------
Confidence 3 3 2689999999876652 233 346999999999999999999999997 899999999999998843
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.....+.+++|+| +..+|+++|+-|+|+||.+....
T Consensus 224 ----~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 ----VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 3455689999999 69999999999999999988754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-11 Score=126.19 Aligned_cols=282 Identities=11% Similarity=0.121 Sum_probs=184.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...++..++|++|+ ++|.+ .+..|.|++..++..+.. --...++++-|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34478899999998 66664 678999999988764321 11227899999999999986
Q ss_pred E-----eCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC
Q 001190 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1128)
Q Consensus 424 ~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h 493 (1128)
= ..+ -.+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+.+|+..+.....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 347899999953322 1222222227999999987 34334457899999333222222336
Q ss_pred CCCeEEEeccCCCCccEEEE-----EeccCcEEEEecCCCCceeeecC---CCCeEEEEEEcCCCCeEEEee-ec-----
Q 001190 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCG-TS----- 559 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~~-~~----- 559 (1128)
...|+.+.+++.+.-..+++ .+.-+.+++|.+........+.. -...-..+.|++-|.-|++.. .+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77889999988755555555 34557899997752221111110 011234577888777544332 21
Q ss_pred --cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE--ECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 560 --KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 560 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
-.++..+++.++..... .+.....++|.++.|+++++.++++ -.-..+.|||++ +.++..+.. ++=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 13567888888873333 3444444589999999999877664 467789999984 455555532 244899
Q ss_pred EEcCCCCEEEEEEc---CCcEEEEEcccC
Q 001190 636 RFSKEGNLLAVTTA---DNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~---dg~i~iw~~~~~ 661 (1128)
-|+|.|++++.++. .|.|-|||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 99999999998876 478999998774
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=139.46 Aligned_cols=232 Identities=14% Similarity=0.164 Sum_probs=193.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
...-..+.++.+|++|+.|+..|.|-.+|+.++.....+. -...|.++.|..+.+ ++|.+ ..+.+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchH--HHHhh-hhceEEEecCCCc
Confidence 4466789999999999999999999999999987655332 345699999999888 55544 5789999999999
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.++.++.|. .|..+.|.|.. -+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998765 58888887743 57888889999999999999998888888889999999999888888774 899
Q ss_pred EEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
|.+|.....+++..+..|.+ .|.++++.++|.++++.|.|..++|||++....+.++... + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999998 8999999999999999999999999999998877766542 2 45778888765 333
Q ss_pred EEEcCCcEEEEE
Q 001190 646 VTTADNGFKILA 657 (1128)
Q Consensus 646 ~~~~dg~i~iw~ 657 (1128)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 3 3455788985
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-12 Score=145.12 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=146.2
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeec--cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.......+...+.+.+|||||++++.+... +..|.+||+.+++... +..+.+...+.+
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 344445678889999999999955444322 3479999998876532 223344556789
Q ss_pred EccCCCEEEE-EeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCCe--EEEEecCCCeE
Q 001190 414 WSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGRKL 487 (1128)
Q Consensus 414 ~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~~--i~vWd~~g~~~ 487 (1128)
|||||+.|+. .+.+| .|.+||+.+++..+ +..+.......+|+|||+. |+..+ .++. |.++|..+...
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 45555 59999999876432 4456666678999999994 44443 4554 66666333334
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
..+..+.......+|++ +|++|+..+.++ .|.+||+.++... .+. +........|+|||++++..... .+..
T Consensus 329 ~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~ 403 (433)
T PRK04922 329 ERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRG 403 (433)
T ss_pred EEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCce
Confidence 44433334445677866 667777665433 6889998776544 332 23345567999999998887643 3456
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.|++++... .....+..+.. .+...+|+|
T Consensus 404 ~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 788888854 44444543332 445556654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=133.92 Aligned_cols=285 Identities=13% Similarity=0.136 Sum_probs=205.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC--CcceEEEEE
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 414 (1128)
++..|+|...-+.+..||||+|++|+|..--.|++||+..-... +..| ...|.-.-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 45556788899999999999999999999999999999765432 2223 234555566
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
|.|-..++.-..|.+|.+-.-. |...+ + .-...-.+++++.-... |+.++....|+-.+ ..|+-+..+...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~----~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYR----T-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhc-Ceeee----e-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 7777777777778877654332 21111 0 01122344555543332 44444456788888 889999999888
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------C-----CeEEEEEEcCCCCeEEEeeeccCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------G-----HWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~-----~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.++++.+++. ..+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 889999998764 368999999999999999876655544322 1 25999999999999999885
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+|.+.+||+++.+++..-.....-++..+.|.+.+ +.+++. ....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 89999999999988765543333457777776553 344443 45689999999999988876433 5899999999
Q ss_pred CCEEEEEEcCCcEEEEEccc
Q 001190 641 GNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+-++.++..++.+..|-+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999888877665543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=128.21 Aligned_cols=353 Identities=11% Similarity=0.078 Sum_probs=231.9
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
.-++..++|||.|+ +|++. .-..|.+|.-..+..+.. --...|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 34789999999999 55654 456789998766553321 12347999999999999998
Q ss_pred EeCC---------------CeEEEEEccCCCcceeceeecccccc--ee-EEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 424 AFTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 424 ~~~d---------------~~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
=+.. ..+.|||+.+|..+.. +.+-..+ .+ -+.|+-|.+ +++=- -...+.|++.++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCc
Confidence 6543 2499999999987764 4444444 55 788999988 33322 2457888884332
Q ss_pred eE-EEecCC-CCCeEEEeccCCCCccEEEE-----EeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 486 KL-FNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 486 ~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
.. ..+..- ...|....|+|.+++..|+. .+.++++++|.+...........-...-..+.|.+.|+++++-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 21 111111 24577778888767666655 356789999998765555544443444467888899988775432
Q ss_pred c-------cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCC
Q 001190 559 S-------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 559 ~-------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
. .-++..++++++....+.... ... ++|...+|.|.++.+++.+ .+-.+.++|+... +...+...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--- 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--- 316 (561)
T ss_pred EeeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---
Confidence 1 124567888888744333222 323 3899999999998887755 6788999999776 44444322
Q ss_pred CCcceEEEcCCCCEEEEEEcC---CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
.=+.+.|+|.+++++.++-| |.+-+|+..........+.+. ...-..|+|||+++-.......
T Consensus 317 -~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-------n~s~~~wspd~qF~~~~~ts~k------ 382 (561)
T COG5354 317 -KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-------NTSYCDWSPDGQFYDTDTTSEK------ 382 (561)
T ss_pred -ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-------CceEeeccCCceEEEecCCCcc------
Confidence 23678899999999987764 679999987765444343332 2334568888887743322211
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
-..|..+++|++.... ....+.+.|.|.|++..+.+.+.
T Consensus 383 -------------------------~~~Dn~i~l~~v~g~~----------------~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 -------------------------LRVDNSIKLWDVYGAK----------------VFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -------------------------cccCcceEEEEecCch----------------hhhhhhccccCCcccceeeccCC
Confidence 1235788999986321 12456677888888777766654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=142.45 Aligned_cols=236 Identities=13% Similarity=0.058 Sum_probs=153.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|..+...........|...|.+.+|||||++++.+.. .+..|.+||+.+|+... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 55555434444445568889999999999996544432 24689999998876532 444
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCC--eEE
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~--~i~ 478 (1128)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++..+ +..+.+......|+|||+. |+..+ .++ .|.
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667888999999998864 455554 7777888876432 5566667788999999995 44433 333 688
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||..+.....+..+.+.+....|+| +|+.|+..+.+ ..|.+||++.... ..+. ....+..+.|+|||+.|+.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEE
Confidence 88855555556654555566677866 66777776543 3577788754433 2232 2335678899999999987
Q ss_pred eeeccCCC--ceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+...... ..++++|+..+.. ..+.. . ..+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~-~~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-P-GDASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-C-CCccCcccCC
Confidence 66422221 4688888876554 33332 1 1344455654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=134.07 Aligned_cols=264 Identities=11% Similarity=0.177 Sum_probs=193.1
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
++|...-.|++||+...... +.. .-....|.-...+.|-..++.-..|..|.+..
T Consensus 68 AtG~YKP~ikvydlanLSLK-------FER-hlDae~V~feiLsDD~SK~v~L~~DR~IefHa----------------- 122 (703)
T KOG2321|consen 68 ATGTYKPQIKVYDLANLSLK-------FER-HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----------------- 122 (703)
T ss_pred EecccCCceEEEEcccceee-------eee-cccccceeEEEeccchhhheEeecCceeeehh-----------------
Confidence 45555577899998753211 111 00223344455566666667777777776642
Q ss_pred cceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEE
Q 001190 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l 888 (1128)
..|...... -+..-..++++. .-.++++|+...|.-++++.|..+..+....+.++++..++ -..+|
T Consensus 123 ------k~G~hy~~R-----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 123 ------KYGRHYRTR-----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ------hcCeeeeee-----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceE
Confidence 112111111 123344555553 44566666788899999999999999998889999999999 78899
Q ss_pred EEEeCCCcEEEEecccceeeeccc------cccc-----CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee
Q 001190 889 AIGTEDSTIHIYNVRVDEVKSKLK------GHQK-----RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1128)
Q Consensus 889 asg~~dg~v~iwd~~~~~~~~~l~------~h~~-----~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1128)
++|+.+|.|..||..+...+..+. .|.+ .|+++.|+.||-.++.|..+|.|.|||+.+.+. +..
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~ 265 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLV 265 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eee
Confidence 999999999999998876665543 2333 399999999999999999999999999998664 333
Q ss_pred cCCCCCCCccEEEEcCC--CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 958 PAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
.++....++..+.|-+. +..+++.+...++|||-.+|+....+.. ...+..+++-|++-+++++.+++.+..|=
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 33444478888888765 5677778888999999999999888877 56799999999999999999998888776
Q ss_pred cCCC
Q 001190 1036 ADTL 1039 (1128)
Q Consensus 1036 ~~~~ 1039 (1128)
+...
T Consensus 342 iP~L 345 (703)
T KOG2321|consen 342 IPSL 345 (703)
T ss_pred cccc
Confidence 6653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-11 Score=128.14 Aligned_cols=548 Identities=12% Similarity=0.108 Sum_probs=315.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc------------ceeceeecccccceeEEEEecCCCeEEEEEec
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
......|++|+....|+|.|+.||.++|..+.+... +..-.++.||.+.|.-+.|..+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345788999999999999999999999998865322 122236889999999999998888 799999
Q ss_pred CCCeEEEEe-cCCCeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC
Q 001190 473 DDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 473 ~d~~i~vWd-~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
.+|.|.||- ..|.-...+. ...+.|.+++|.. +|..+...-.||.|.+=.++. ..++--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeeccc
Confidence 999999999 7776543332 2345678888854 778888888888887765543 222222333444567889999
Q ss_pred CCeEEEeeeccCCCceEEEEeCCCCc-------eeeEeccc---cCCceeEEEE--------eCCCCEEEEEECCCcEEE
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF---RKKSNGVVQF--------DTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~s~dg~i~i 611 (1128)
.+.++.+-. .+.++++|....- +.....+. ....+..+.| -|+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887663 7889999865321 10011110 0012333333 357789999999999998
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee-eeecccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSAS 690 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~ 690 (1128)
-.-++......+... -.+....|+++|..|++++.+..-.- +.. .+.+ -++|-|.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d--------------------~n~v~Fysp~G~ 299 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTD--------------------SNKVHFYSPYGH 299 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccc--------------------cceEEEeccchh
Confidence 876665444444322 25788999999999999986532100 000 0011 1122222
Q ss_pred cccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEE
Q 001190 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1128)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1128)
.+ ..+.. ....|+++
T Consensus 300 i~------------------------------------------------------------gtlkv-----pg~~It~l 314 (1189)
T KOG2041|consen 300 IV------------------------------------------------------------GTLKV-----PGSCITGL 314 (1189)
T ss_pred he------------------------------------------------------------EEEec-----CCceeeee
Confidence 21 00111 22345555
Q ss_pred EEecCcceEEEeeccceeEeeeccccCC----------CCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQ----------NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+|-..|-.++. .-|+.|.+=++...-. ...+.......+..||..+.+.... .-....+++|.
T Consensus 315 sWEg~gLriA~-AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~~a~~ 387 (1189)
T KOG2041|consen 315 SWEGTGLRIAI-AVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFENMAFY 387 (1189)
T ss_pred EEcCCceEEEE-EecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceeehhee
Confidence 55555443332 2234444433332100 0011111122355777777654332 22335677877
Q ss_pred cCCCeEEEEe-CCeEEEEEC-CCceEEE--Eee---CC--CCCeeEE--EEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 841 KNDSYVMSAT-GGKISLFNM-MTFKVMT--TFM---SP--PPASTFL--AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~-~~~~~~~--~~~---~~--~~~v~~l--~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
.+--.|+.-. +|.+.-++. ++...+. .+. +. ...++.+ .|---++.+++.++.+ .+.+|.....+...
T Consensus 388 ~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s 466 (1189)
T KOG2041|consen 388 REHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNS 466 (1189)
T ss_pred cccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhh
Confidence 7666666554 566655522 1111111 111 10 1111111 1111156667777655 58899887665544
Q ss_pred cccc---cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCe
Q 001190 910 KLKG---HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1128)
Q Consensus 910 ~l~~---h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 985 (1128)
.+.+ |...- |+-| ..-+++.|+++. ..+.. ..+. ..++..++.+ .++++++ ..|.
T Consensus 467 ~l~~~k~rkegr----~h~D--dtp~ga~d~~l~---ys~kt---------~~G~-~DpICAl~~s--dk~l~vareSG~ 525 (1189)
T KOG2041|consen 467 VLAGVKIRKEGR----FHGD--DTPEGAQDRTLE---YSTKT---------LLGS-KDPICALCIS--DKFLMVARESGG 525 (1189)
T ss_pred hhhhhhhccccc----ccCC--CCccchhhceee---cccee---------eccC-CCcceeeeec--ceEEEEEeccCc
Confidence 4433 21111 3322 233455665442 12111 1111 1566666654 3456665 4899
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC---CCceEEEeCCCCCCCCcccCCCCcc
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD---TLRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
|.-|.+.+......... +..|.++++.-+...++.-.--|.+.+.|+. +|..+.-+. ....-
T Consensus 526 I~rySl~nv~l~n~y~~----n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-----------~~err 590 (1189)
T KOG2041|consen 526 IYRYSLNNVVLTNSYPV----NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-----------TSERR 590 (1189)
T ss_pred eEEEEecceeeeecccc----CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-----------hhhhh
Confidence 99999998887776655 6788999999888889988888888888876 344433222 12223
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1063 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1063 ~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.|-.+.|..+++ .+++-..-..+.|++-.+.+
T Consensus 591 DVWd~~Wa~dNp-~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 591 DVWDYEWAQDNP-NLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hhhhhhhccCCc-hHHhhhhhceEEEecCcCcc
Confidence 345677776433 34444455566666655444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-11 Score=125.28 Aligned_cols=354 Identities=13% Similarity=0.112 Sum_probs=217.1
Q ss_pred cEEEEecCCCCceeeecCC---CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 519 KIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+.+|..-..........+ ..+++..++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecc
Confidence 4566655432222222222 44578889999999999885 678999999888655544443 467799999
Q ss_pred CCCEEEEE-----EC-----CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccc
Q 001190 596 TQNHFLAV-----GE-----DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1128)
Q Consensus 596 ~~~~l~~~-----s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1128)
.+.+|.+- .. .-.+.+|+.+++.....+...... -++..|+.|..+.+- -..+.+.+|++.+.....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCcccee
Confidence 99988762 11 245779999997766666544332 268899998655432 335689999987743333
Q ss_pred ccccCCccccccCcceeeeeeccccc-ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASS-AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (1128)
..+ +...|..+.++|.+.. .++..-+. ..+.-..+++|...
T Consensus 161 ~kl-------~~~~i~~f~lSpgp~~~~vAvyvPe-------------------------------~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 161 HKL-------SVSGITMLSLSPGPEPPFVAVYVPE-------------------------------KKGAPASVRIYKYP 202 (566)
T ss_pred eee-------eccceeeEEecCCCCCceEEEEccC-------------------------------CCCCCcEEEEeccc
Confidence 322 3345777788877432 22221111 12223556666655
Q ss_pred EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccccc
Q 001190 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1128)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1128)
..........-.+ ....-..+.|.+-|.-|++.... |++.... ..-+..++.+.++. |......
T Consensus 203 ~~~~~~~~a~ksF-----Fkadkvqm~WN~~gt~LLvLast------dVDktn~----SYYGEq~Lyll~t~-g~s~~V~ 266 (566)
T KOG2315|consen 203 EEGQHQPVANKSF-----FKADKVQMKWNKLGTALLVLAST------DVDKTNA----SYYGEQTLYLLATQ-GESVSVP 266 (566)
T ss_pred cccccchhhhccc-----cccceeEEEeccCCceEEEEEEE------eecCCCc----cccccceEEEEEec-CceEEEe
Confidence 2222211111111 11122345566666544332211 1111000 11111122333333 2222212
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC---CCcEE
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIH 898 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~---dg~v~ 898 (1128)
+. ..++|.++.|+++|+-+++.. -.++.|||++ +..+..+ ..++-.++-|+| .|++++.++- -|.+.
T Consensus 267 L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 267 LL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred cC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 22 578999999999999887775 3779999985 5666555 566778999999 8888887764 48999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcC------CCcEEEEECCC
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------DAQLCVWSIDT 946 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------Dg~i~iwd~~~ 946 (1128)
|||+.+.+++..+..-.. +-+.|+|||.+++|+.. |..++||++..
T Consensus 340 vwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999999999988876433 45889999999998864 67899999876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-10 Score=122.04 Aligned_cols=209 Identities=16% Similarity=0.212 Sum_probs=135.4
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCC-ceEEEE---ee----------CCCCCeeEEEEcCCCCCEEEEEe-CCC
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGT-EDS 895 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~v~~l~~s~~d~~~lasg~-~dg 895 (1128)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.++| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 67888888875 433222 11 1123578999999 887776654 445
Q ss_pred cEEEEecccce--ee--eccc-ccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECC--CCcccceeEEeecCC-CC-CCC
Q 001190 896 TIHIYNVRVDE--VK--SKLK-GHQKRITGLAFSTSLNILVSS-GADAQLCVWSID--TWEKRKSVTIHIPAG-KT-PTG 965 (1128)
Q Consensus 896 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~--~~~~~~~~~~~~~~~-~~-~~~ 965 (1128)
.|++|++.... +. ..+. .....-..++|+|+++++... -.++.|.++++. .+............. .. ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 22 1222 123456789999999977654 567889999998 443333333332211 11 136
Q ss_pred ccEEEEcCCCCEEEEEe--cCeEEEEecC-C-ccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEec--
Q 001190 966 DTRVQFNADQVRMLVVH--ETQLAIYDAS-K-MER--IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDA-- 1036 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--d~~i~v~d~~-~-~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~-- 1036 (1128)
...++++|||++|.++. .+.|.+|++. . +.. +..+... ......++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 78899999999999975 7789999994 2 222 2223221 45579999999999999877 6678999876
Q ss_pred CCCceEEEe
Q 001190 1037 DTLRLRCYI 1045 (1128)
Q Consensus 1037 ~~~~~~~~~ 1045 (1128)
++|.+...-
T Consensus 324 ~tG~l~~~~ 332 (345)
T PF10282_consen 324 DTGKLTPVG 332 (345)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 577765544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=122.21 Aligned_cols=343 Identities=14% Similarity=0.229 Sum_probs=214.7
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC-CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
.+++.++|+.+ .+.....-|...-+++.+.|.+++||-- +.++.-..+.. ....++.++.+.++.+.|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 6666666677788999999999999954 44554443322 223467899999999999999999998
Q ss_pred EEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
.-+.+.........
T Consensus 93 tefs~sedfnkm~~------------------------------------------------------------------ 106 (404)
T KOG1409|consen 93 TEFALSEDFNKMTF------------------------------------------------------------------ 106 (404)
T ss_pred EEEEhhhhhhhcch------------------------------------------------------------------
Confidence 87765432111100
Q ss_pred CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
++.| ..|...+..+.|+-....+++.+.|..+. |.-.
T Consensus 107 ----~r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~------------------- 143 (404)
T KOG1409|consen 107 ----LKDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT------------------- 143 (404)
T ss_pred ----hhhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee-------------------
Confidence 0111 12777888888888888888888875543 3211
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEE--ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF--NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw--d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
+.|..+.... .....+++.+.-. +...|. .|.|.+- ......++.++.+|.+.+++++|.+ ..++|.+
T Consensus 144 --e~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfS 214 (404)
T KOG1409|consen 144 --ESGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFS 214 (404)
T ss_pred --ccCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEe
Confidence 1111110000 0011111111111 333333 3444433 3345677889999999999999999 8899999
Q ss_pred EeCCCcEEEEecccce-eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEe-------------
Q 001190 891 GTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH------------- 956 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~------------- 956 (1128)
|..|..+.+||+.-++ ...++.+|.+.|..+...+--+.|.+++.||.|.+|+++........-..
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 9999999999997553 34578899999999999888899999999999999999764332211100
Q ss_pred ------------ecCCCC---CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccc-----cccccCCCCCCCeEEEEEe
Q 001190 957 ------------IPAGKT---PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-----RQWTPQDALSAPISCAVYS 1016 (1128)
Q Consensus 957 ------------~~~~~~---~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~h~~~v~~l~~s 1016 (1128)
....+. ...+...+-+....+...+.+-.+++-|.-..... ..-.+|+. ...|+++.+-
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlq 373 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQ 373 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhh
Confidence 000000 01222222222222333333444555543321111 11122333 5678999998
Q ss_pred eCCCEEEEEecCCcEEEEecCC
Q 001190 1017 CNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1017 ~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.+-.+|+|++.|..|+|||+..
T Consensus 374 etlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 ETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhccceeecCCceEEEEEechh
Confidence 8888999999999999999864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-10 Score=120.10 Aligned_cols=372 Identities=13% Similarity=0.117 Sum_probs=229.5
Q ss_pred EEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+.. ..|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCccccee
Confidence 3455444444444444566889999999999999875 45699999887775555543 257889999999999
Q ss_pred EEEECC---------------CcEEEEECCCCeeeEEEecCCCCCCcc-eEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 601 ~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
++-+.. ..+.+||..+|.++..+.......-.. -+.|+-+.+++|-. ....+.|+++ ++...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 986643 349999999999998887654421233 67889888887755 3457889987 33111
Q ss_pred cccccCCcccccc-Ccceeeeeeccccccc-ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 665 LRAVENPPFEALR-TPIESVALKVSASSAV-SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 665 ~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
.+.....+ ..|....++|.|..-. +...+. ....+..+++|.
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE-------------------------------k~~kpa~~~i~s 208 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHDELAYWTPE-------------------------------KLNKPAMVRILS 208 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCceEEEEccc-------------------------------cCCCCcEEEEEE
Confidence 12222222 4567778888754321 111111 122335556666
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
+.. ...+....+.. -.-..+-|.+.|.++++-....+ + .+....+...+.++++....+..
T Consensus 209 Ip~---~s~l~tk~lfk-----~~~~qLkW~~~g~~ll~l~~t~~-k----------snKsyfgesnLyl~~~~e~~i~V 269 (561)
T COG5354 209 IPK---NSVLVTKNLFK-----VSGVQLKWQVLGKYLLVLVMTHT-K----------SNKSYFGESNLYLLRITERSIPV 269 (561)
T ss_pred ccC---CCeeeeeeeEe-----ecccEEEEecCCceEEEEEEEee-e----------cccceeccceEEEEeecccccce
Confidence 542 11122211111 11135667777777654322100 0 00111111223333333111111
Q ss_pred ccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC---Cc
Q 001190 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---ST 896 (1128)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d---g~ 896 (1128)
.. ...++|...+|.|+++.+++.+ ...+.++|+... .. +......=..+.|+| .+++++.++-| |.
T Consensus 270 -~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 270 -EK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred -ec---cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccccc
Confidence 00 2578999999999999887765 567999999765 33 333455567788999 78888876644 78
Q ss_pred EEEEecccceeee-cccccccCeeEEEEcCCCCEEEEEc------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEE
Q 001190 897 IHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1128)
Q Consensus 897 v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~~------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 969 (1128)
+.+||........ .+.+.. ..-+.|+||+.++.+.. .|..|+|||+..... ...+.+
T Consensus 342 i~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--------------fel~~~ 405 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--------------FELTNI 405 (561)
T ss_pred eEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--------------hhhhhc
Confidence 9999988664443 666543 34578999999888764 378899999987442 245667
Q ss_pred EEcCCCCEEEEE
Q 001190 970 QFNADQVRMLVV 981 (1128)
Q Consensus 970 ~~s~d~~~l~~~ 981 (1128)
.|.|.|++..+.
T Consensus 406 ~W~p~~~~~tts 417 (561)
T COG5354 406 TWDPSGQYVTTS 417 (561)
T ss_pred cccCCcccceee
Confidence 888888777664
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=122.09 Aligned_cols=273 Identities=11% Similarity=0.136 Sum_probs=191.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEe-eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~g-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
....|..++|--|++.=+..+ +.|..+..+.+........ .|+. ......+++|..++.. ...|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~---------~~~~l~~~~I~gl~~~--dg~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDA---------KTVSLGTKSIKGLKLA--DGTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccc---------cccccccccccchhhc--CCEE
Confidence 455678888876665333333 3566677776665554321 1221 2244456677777765 3477
Q ss_pred EEEeCCCeEEEEEccCCCccee-ceeecccccceeEEEEecCCCeEEEEEecCC--CeEEEEe-cCCCeEEEecC-----
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG----- 492 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d--~~i~vWd-~~g~~~~~~~~----- 492 (1128)
++|-.+|.+.+|..+.+..-.. ...+..+ ..+..+.=++.... ++++|+.. ..+.+|| ...+.+..-+.
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 7888999999999985541100 0012223 45666666666664 67779998 8899999 55544433221
Q ss_pred --CCCC--eEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 493 --HEAP--VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 493 --h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.-+ ++++.|.+..+...|++++.-+.+|+||.+.+.. ...+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 1123 4566776654468999999999999999987654 4467777889999999999999999874 78899
Q ss_pred EEeCCCCceeeE-eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 568 EWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 568 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.+|.+.++.... +.+..+ .+..+..+|...+++++|-|+.|+|+|+++.+++.......+ ++++.+.++
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~~ 342 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRDD 342 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecCC
Confidence 999999998887 666665 899999999999999999999999999999777766554433 566666553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-10 Score=123.33 Aligned_cols=254 Identities=15% Similarity=0.214 Sum_probs=164.0
Q ss_pred CCCeeEEEeccCCCeEEEEeC-----CeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE
Q 001190 831 EEAVPCIALSKNDSYVMSATG-----GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 900 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~d-----g~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iw 900 (1128)
......++++|++++|.+... +.|..|++.. ++ .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 455677899999999988863 5688888765 33 3344443445567899999 788777775 68999999
Q ss_pred eccc-ceeeec---c--c--------ccccCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCCc--ccceeEEeecCCCCC
Q 001190 901 NVRV-DEVKSK---L--K--------GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWE--KRKSVTIHIPAGKTP 963 (1128)
Q Consensus 901 d~~~-~~~~~~---l--~--------~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~ 963 (1128)
++.. |.+... + . .......++.|+|||+++++... ...|.+|+++... ......+.. ...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~---~~G 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV---PPG 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC---STT
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc---ccC
Confidence 9986 433322 1 1 12234678999999998887532 3469999998765 222222222 223
Q ss_pred CCccEEEEcCCCCEEEEEe--cCeEEEEecC--Cccc--cccccc---CCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEE
Q 001190 964 TGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTP---QDALSAPISCAVYSCNSQLVFATF-CDGNIGV 1033 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~---~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~v 1033 (1128)
...+.++|+||++++.+.. ++.|.+|++. ++.. +..+.. ..........++++|||++|+++. .++.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998865 7889999988 3322 111111 111123688999999999999866 5778999
Q ss_pred EecC--CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCCCCCcc
Q 001190 1034 FDAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1034 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~~~~w~ 1099 (1128)
|++. +|++...-.. ......+..++++| ++++|+++. .++.|.+|++....+++.
T Consensus 272 f~~d~~~g~l~~~~~~----------~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTV----------PTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEECTTTTTEEEEEEE----------EESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEecCCCceEEEEEE----------eCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 9993 3444332220 01233578999999 577666555 777899998865444443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=118.09 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=121.5
Q ss_pred CCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEeeCCC-----CCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~~~~-----~~v~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
.|...|.++.++.|+..++++.|=.|-+|+++--.. +-.++.+. .-|++..|+|....+++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 488999999999999999999999999999863221 22222232 2489999999888899999999999999
Q ss_pred ecccceee----ec------------ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC-cccceeEEeecCCCCC
Q 001190 901 NVRVDEVK----SK------------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 901 d~~~~~~~----~~------------l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 963 (1128)
|++...+- +. +.+--..|..+.|+++|+|+++-+. -+|++||+... +...+.+++....
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr--- 317 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR--- 317 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH---
Confidence 99843211 11 1112246888999999999998654 57999999542 2222222221000
Q ss_pred CCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE
Q 001190 964 TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
.+ +..+...++ -..-..++||.++.+++||+..+.++||++..|....
T Consensus 318 ------------------------------~k-Lc~lYEnD~-IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 318 ------------------------------SK-LCSLYENDA-IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred ------------------------------HH-HHHHhhccc-hhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 00 011111000 1223567899999999999999999999987766544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-09 Score=110.15 Aligned_cols=252 Identities=10% Similarity=0.213 Sum_probs=174.4
Q ss_pred CCCCeeEEEeccCCCeEEEEe----CCeEEEEECCC--ceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSAT----GGKISLFNMMT--FKVMT--TFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 900 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~--~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iw 900 (1128)
.....+-++|+|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 677789999999999998874 36687777764 55422 2222233348899999 898888876 45789999
Q ss_pred eccc-ceeee--cccccccC----------eeEEEEcCCCCEEEEEc--CCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 901 NVRV-DEVKS--KLKGHQKR----------ITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 901 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
-+.. |.+.. .+..|.+. +....|.|++++|++.+ .| .|.+|+++.|+........... +..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~---G~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP---GAG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC---CCC
Confidence 9865 43321 12235554 88899999999999874 45 5999999988776655555433 377
Q ss_pred ccEEEEcCCCCEEEEEe--cCeEEEEecCCc-ccccccccC------CCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEe
Q 001190 966 DTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQ------DALSAPISCAVYSCNSQLVFATF-CDGNIGVFD 1035 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd 1035 (1128)
.+.|+|+|++++..+.. +++|.+|..... ..+..++.. -.-.....+|.+++||++|.++. ....|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988764 899999998873 223322221 11256778999999999999876 345788887
Q ss_pred cCC--CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-cEEEEcCCCCCCC
Q 001190 1036 ADT--LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-SVKVMEPSESEGK 1097 (1128)
Q Consensus 1036 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg-~i~iWd~~~~~~~ 1097 (1128)
+.. |.+...... ..+..++..+.|+|. +++|++++.++ +|.+|......++
T Consensus 273 V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 273 VDPDGGKLELVGIT----------PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EcCCCCEEEEEEEe----------ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCce
Confidence 764 333222221 134456788999994 77776666554 6889987765543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-11 Score=120.42 Aligned_cols=172 Identities=17% Similarity=0.255 Sum_probs=133.3
Q ss_pred EEEeecc--ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC--CCeEEEEe-CCe
Q 001190 779 LLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGK 853 (1128)
Q Consensus 779 l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~-dg~ 853 (1128)
+++||.. ..+.+||+.... ++|...+-. ...-+..-+-.++++.|-+. ...+|++. -+.
T Consensus 164 va~GGke~~n~lkiwdle~~~-------------qiw~aKNvp---nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSK-------------QIWSAKNVP---NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred EecCchhcccceeeeecccce-------------eeeeccCCC---CccccceeeeeeccceecCCCCCceEEEEeccee
Confidence 4446666 789999987643 344433211 11111113455778888887 78889988 799
Q ss_pred EEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec-ccccccCeeEEEEcCCCCEEE
Q 001190 854 ISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILV 931 (1128)
Q Consensus 854 i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~ 931 (1128)
+++||...+ +++..+.--..+++++...| +++++.+|..-|.+..||++.++.... +.+-++.|+++..+|.+++|+
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la 306 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA 306 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence 999999866 45777777788999999999 999999999999999999999998877 899999999999999999999
Q ss_pred EEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
++|-|+.|||+|+++.+.+....+. ...+.+.+.++
T Consensus 307 s~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~ 342 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDD 342 (412)
T ss_pred eeccceeEEEeecccchhhhhhhhh-------ccccEEEecCC
Confidence 9999999999999996655444443 45566666554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=111.14 Aligned_cols=282 Identities=12% Similarity=0.133 Sum_probs=184.7
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecc---ceeEeeeccccCCCCCCceeeeeccc
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQ 811 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (1128)
.+.|.+|++.... +....... ....+..+-++++|+++.|.++..+ |.+.-|.++
T Consensus 15 s~gI~v~~ld~~~--g~l~~~~~---v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD----------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKT--GELSLLQL---VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID----------------- 72 (346)
T ss_pred CCceEEEEEeCcc--cccchhhh---ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-----------------
Confidence 3678888887322 12211112 2266788899999999999888764 666666553
Q ss_pred eeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCC-ceEEE--EeeCCCCC----------ee
Q 001190 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMT--TFMSPPPA----------ST 876 (1128)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~ 876 (1128)
..+|.+....... ....+...++++++|++|+++. .|.|.++-+.. |.+.. .+..|.+. +.
T Consensus 73 ---~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H 148 (346)
T COG2706 73 ---PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH 148 (346)
T ss_pred ---CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc
Confidence 3333322111100 0234448899999999999997 68899999865 43322 22234444 88
Q ss_pred EEEEcCCCCCEEEEEe-CCCcEEEEecccceeeeccc---ccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCC--cc
Q 001190 877 FLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTW--EK 949 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~~--~~ 949 (1128)
...+.| ++++|++.. .--.|.+|++..|++...-. .....-..|.|+|++++..... -+++|.+|.++.. +.
T Consensus 149 ~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 149 SANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 899999 898888765 33469999999886543221 2234567899999999877655 5899999999883 32
Q ss_pred cceeEEeecCCC--CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 950 RKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 950 ~~~~~~~~~~~~--~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
.....+...... .......|..++||++|.++. ...|.+|.+... ..+........+...-....|+++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 222222222221 126778899999999999985 458889988754 323333333333555789999999999999
Q ss_pred EecCC-cEEEEecC--CCceEE
Q 001190 1025 TFCDG-NIGVFDAD--TLRLRC 1043 (1128)
Q Consensus 1025 ~~~dg-~i~vwd~~--~~~~~~ 1043 (1128)
+..++ .|.||..+ +|++-.
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEe
Confidence 88544 58888665 555433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=118.63 Aligned_cols=155 Identities=12% Similarity=0.197 Sum_probs=108.9
Q ss_pred eEEEEcCCCCCEEEEEeC----------CCcEEEEeccc-ceeeecccc-cccCeeEEEEcCCCCEEEEE--cCCCcEEE
Q 001190 876 TFLAFHPQDNNIIAIGTE----------DSTIHIYNVRV-DEVKSKLKG-HQKRITGLAFSTSLNILVSS--GADAQLCV 941 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--~~Dg~i~i 941 (1128)
..+.|++ .|.+|+.-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567788 6655554332 13355555532 223333332 34579999999999987654 45789999
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecCCcccccccccCCCCCCCeEEEEEee
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~ 1017 (1128)
||++ ++.+.. +. ...+..+.|+|+|+++++++ .|.+.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~-~~~i~~--~~------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GKKIFS--FG------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP 153 (194)
T ss_pred EcCc-ccEeEe--ec------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC
Confidence 9997 332221 11 14567899999999999864 4679999999888877654 34578999999
Q ss_pred CCCEEEEEec------CCcEEEEecCCCceEEEeC
Q 001190 1018 NSQLVFATFC------DGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1018 dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~ 1046 (1128)
||++|+++.. |+.++||+. .|+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 9999998764 789999998 477766655
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-10 Score=129.20 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=143.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--e
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~ 476 (1128)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887643 369999999886433 3333445667899999995 334555555 6
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ ||+.|+..+ .+| .|.++++.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444556666665566677866 566665544 344 46666766554332 22223334567899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++..... ...+... ..
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~--~g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTA--QG 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCC--CC
Confidence 887642 23456889999888654332221 12245899999999887643 357777875443 3333322 22
Q ss_pred CcceEEEcCC
Q 001190 631 NLPRLRFSKE 640 (1128)
Q Consensus 631 ~v~~v~~sp~ 640 (1128)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 4566777763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-09 Score=112.41 Aligned_cols=203 Identities=13% Similarity=0.171 Sum_probs=126.7
Q ss_pred eEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceee--
Q 001190 835 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK-- 908 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-- 908 (1128)
..++++|||++|.+.. ++.|.+.|+.+++.+.++.-.. ...-...+. ..++ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccE-EEeecCceEEEEecCCCceEEe
Confidence 3567788888877664 5678888888888888776422 111122221 1222 222344443333321 2111
Q ss_pred --ecccccccCee-EEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEE
Q 001190 909 --SKLKGHQKRIT-GLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 909 --~~l~~h~~~V~-~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 978 (1128)
..+.+-..++. .-.|++ ||+++..... |.|.+-|+............... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 01111001110 014455 8887776665 99999997654433322222211 1122344459999999998
Q ss_pred EEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEEe
Q 001190 979 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~ 1045 (1128)
++.. .+.|.++|..+++.+..+.. ...+..++|||||+ +|++.. .++.|.|.|+.+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 25799999999999998887 67899999999999 888766 5788999999999999998
Q ss_pred C
Q 001190 1046 A 1046 (1128)
Q Consensus 1046 ~ 1046 (1128)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-10 Score=128.56 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=147.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcE--EEEeeccC--eEEEEEccCCceecccccccccccccCccccceec
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL--LLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l--la~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
+|-++...............+..-+|||||+.+ +++...+| .|.+.++.+|+... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 554443333333333355667788999999863 33544444 57777887776432 2
Q ss_pred cCCCcceEEEEEccCCCEEEEEeC-----CCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~-----d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...++
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCC
Confidence 233445567899999999987653 2234557776532 1221 12233344567899999995 233444566
Q ss_pred eEEEEe--c--CCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcC
Q 001190 476 LIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 476 ~i~vWd--~--~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~ 548 (1128)
...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECC
Confidence 555654 3 2344555655555667778876 66777765543 3688999887665433 33334567899999
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1128)
||+.|+.... ..+...|+++|+.+++......+. +.+...+|+|-
T Consensus 381 DG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~ 425 (428)
T PRK01029 381 DSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS--GEKRFPSWGAF 425 (428)
T ss_pred CCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC--CcccCceecCC
Confidence 9999887653 234678999999887765544322 13455677764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-10 Score=128.27 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=141.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe--
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~-- 476 (1128)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567789999999999999987543 258889998876432 2222334457899999996 3345566664
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCc--EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+.......+|++ ||+.|+..+ .++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777844445566666655667778876 566665544 3454 444565554432 232233334567899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-C--cEEEEECCCCeeeEEEecCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-S--QIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+..... .+...|.++|+.+++........ ......|+|+|+.|+..+.+ | .+++++. ++.....+.... .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 23446777898887654322221 12235799999998876643 3 3777787 455555554332 2
Q ss_pred CcceEEEcC
Q 001190 631 NLPRLRFSK 639 (1128)
Q Consensus 631 ~v~~v~~sp 639 (1128)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466778877
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=131.53 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=137.3
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.....+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeEC
Confidence 344557778999999999996655543333 58888988876432 11122234568999
Q ss_pred cCCCEEEEE-eCCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEe-cCCCeEEE
Q 001190 416 PDGNYVGVA-FTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFN 489 (1128)
Q Consensus 416 pdg~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd-~~g~~~~~ 489 (1128)
|||+.|+.. +.+|. |.+||+++++..+ +..+.......+|+|||+. ++++...++ .|.++| .+|+ ...
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~ 344 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSR 344 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEE
Confidence 999988764 55664 7777888775432 4455566788999999995 334444444 466667 4454 333
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEec-cCcEEE--EecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKA--WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~--wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
+..........+|++ ||++|+..+. ++...+ +|++++.... +... .......|+|||+.|+.... .++...+
T Consensus 345 Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l 419 (448)
T PRK04792 345 LTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVL 419 (448)
T ss_pred EecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEE
Confidence 332222234456765 5667766554 444444 5665554332 2221 22234579999999987764 2344568
Q ss_pred EEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
++++. +|+....+..+.+ .+...+|+|
T Consensus 420 ~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 88887 5555566655433 455566765
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-09 Score=113.28 Aligned_cols=240 Identities=9% Similarity=0.045 Sum_probs=154.3
Q ss_pred eccCCCeEEEEeC-----------CeEEEEECCCceEEEEeeCCCC-------CeeEEEEcCCCCCEEEEEe-C-CCcEE
Q 001190 839 LSKNDSYVMSATG-----------GKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT-E-DSTIH 898 (1128)
Q Consensus 839 ~s~dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~lasg~-~-dg~v~ 898 (1128)
+||||+.+.++.. +.|.+||..+++.+.++..... ....++++| ||++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999988874322 234889999 888887665 4 78999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC-CCCE
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVR 977 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~ 977 (1128)
+.|+.+++.+.++.-- +...-...+++ ..++ -+.||......+.+..................-...-.|++ ||++
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~-~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTAND-TFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCC-ccEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999998877642 22222222222 2222 23455555444433222222222221110000001114556 9999
Q ss_pred EEEEecCeEEEEecCCcc-----cccccccC----CCCCCCeEEEEEeeCCCEEEEEe----------cCCcEEEEecCC
Q 001190 978 MLVVHETQLAIYDASKME-----RIRQWTPQ----DALSAPISCAVYSCNSQLVFATF----------CDGNIGVFDADT 1038 (1128)
Q Consensus 978 l~~~~d~~i~v~d~~~~~-----~~~~~~~~----~~h~~~v~~l~~s~dg~~l~t~~----------~dg~i~vwd~~~ 1038 (1128)
+.++.+|.|.+.|+.... .+..+... .-....+.-+++++||+.+++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 999888999999965432 22222111 01134455699999999888853 225799999999
Q ss_pred CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEE-CCCcEEEEcCCCCCC
Q 001190 1039 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGL-TDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~-~dg~i~iWd~~~~~~ 1096 (1128)
++.+..+.. ++ .+..++++| |++ +|.+.. .++.|.+.|..+++.
T Consensus 289 ~kvi~~i~v-----------G~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 289 GKRLRKIEL-----------GH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CeEEEEEeC-----------CC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999882 22 457899999 566 666555 789999999988753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.7e-10 Score=124.68 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=141.8
Q ss_pred ccCCCcceEEEEEccCCCEEE---EEeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC---
Q 001190 402 FKDVPISVSRVAWSPDGNYVG---VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--- 473 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~la---s~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--- 473 (1128)
+......+.+-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|+|||+. ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 444555677889999998633 333343 57888888876543 3334445567899999995 2333332
Q ss_pred -CCeEEEEe-cC---CCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCC---CCceeeecCCCCeEEEE
Q 001190 474 -DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDT---MGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 474 -d~~i~vWd-~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~---~~~~~~~~~~~~~i~~~ 544 (1128)
|..+..|+ .. +.......++.+.....+|+| ||+.|+..+ .+|...+|.+.. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 33455577 43 233333333333445667866 667666554 567666665432 22233444444567788
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCeeeE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~ 621 (1128)
.|||||+.|+..... ++...|.+||+.+++....... . ..+....|+|||+.|+..+. ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999887642 2456899999998876544333 2 24566889999998886543 4578999998887655
Q ss_pred EEecCCCCCCcceEEEcCC
Q 001190 622 STDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~ 640 (1128)
.....+ .+...+|+|-
T Consensus 410 Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGSG---EKRFPSWGAF 425 (428)
T ss_pred eecCCC---cccCceecCC
Confidence 443222 3567788874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-10 Score=130.68 Aligned_cols=236 Identities=12% Similarity=0.059 Sum_probs=144.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+...+...+|||||++++.+...+ ..|.+||+.+|+... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4433333334445556888899999999999665554333 368899998876532 222
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEEE
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~v 479 (1128)
..+.+...+|||||+.|+. ...+| .|.+||+.+++..+ +..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 3344567899999999885 44444 58888998876432 4456666778899999995 333443344 5777
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-C--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+| .+|+. ..+...........|++ +|+.|+..+.+ + .|.+||+.++.... +.. ........|+|||+.++.
T Consensus 316 ~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCE-EEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEE
Confidence 77 45553 33322222233456765 56677666543 3 47778887765433 222 222335689999999988
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.... .+...+.+++... ...+.+..+.+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 7642 2355678888753 33344443322 445555654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-09 Score=112.93 Aligned_cols=327 Identities=12% Similarity=0.189 Sum_probs=194.0
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-----------CCc
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-----------DSQ 608 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----------dg~ 608 (1128)
.-+-+.|||.|.+|++.. ..-|.+|--.+-..++.|. |. .+..+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~-Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY-HP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc-CC--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 456789999999999986 5558999877666666665 22 5888999999999999652 257
Q ss_pred EEEEECCCCeeeEEEecCCCCCC-cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPN-LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
++|||+.+|.....+........ -.-..||.|++++|.-.. ..|.|++...- ..+....
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccc---------------
Confidence 99999999999888765322222 244679999999987765 46777765431 1111100
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
-....|
T Consensus 344 --------------------------------------------------------------------------lki~gI 349 (698)
T KOG2314|consen 344 --------------------------------------------------------------------------LKISGI 349 (698)
T ss_pred --------------------------------------------------------------------------cCCccc
Confidence 022345
Q ss_pred EEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
..+.|+|.+..|+- |. ..+.. .+..
T Consensus 350 r~FswsP~~~llAY---------wt----------------------pe~~~----------~par-------------- 374 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAY---------WT----------------------PETNN----------IPAR-------------- 374 (698)
T ss_pred cCcccCCCcceEEE---------Ec----------------------ccccC----------Ccce--------------
Confidence 55666666554432 21 00000 1111
Q ss_pred EEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE----------EeCCCcEEEEecccceeeecccccccC
Q 001190 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las----------g~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
+.+..+.+++.+++-.-+.-.-..+.|-. +|.+|+. ++.=..+.|+.+.....--..-.-...
T Consensus 375 ------vtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 375 ------VTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ------EEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 22222222222222222211112223333 3333332 222234667777655432222234578
Q ss_pred eeEEEEcCCCCEEEEEcCC---CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ecCeEEEEe
Q 001190 918 ITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYD 990 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~v~d 990 (1128)
|...+|-|.|..+++.+.. .++.+|.+++......+ +...+. ...+.+.|+|.|++++++ ..|.+..||
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l-Vk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL-VKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh-hhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 9999999999987765433 57899988842211111 111111 456789999999999885 378899999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec------CCcEEEEecC
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC------DGNIGVFDAD 1037 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~------dg~i~vwd~~ 1037 (1128)
.........-... -...+.+.|.|.|+|+++++. |.-.+||+..
T Consensus 524 ~~~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 524 TDYADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cchhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9853333322221 345678999999999999874 3345555553
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=131.92 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=142.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|..+.........+.+...+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4443333333444556777899999999999654443222 479999998876432 333
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEE-ecCCC--eEE
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDK--LIK 478 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s-~s~d~--~i~ 478 (1128)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++.... +..+........|+|||+. |+. ...++ .|.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCCE--EEEEECCCCCceEE
Confidence 55567789999999988754 4343 58888988875332 4445555667899999994 443 33333 577
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||..+.....+..+...+....|++ +|++++.++.++ .|.+||+.++.... +.. ........|+|||+.|+.
T Consensus 306 ~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEE
Confidence 77844444455555556667778866 667888877765 78888887643322 222 223455689999999988
Q ss_pred eeeccCCCceEEEEeCCCCceeeEec
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
.... ++...+++.+.. ++....+.
T Consensus 382 ~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 382 ATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEeC-CCcEEEEEEECC-CceeeECC
Confidence 7753 233456666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-10 Score=129.20 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=139.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--e
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~ 476 (1128)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 45567789999999999999988654 479999999876432 3345666778999999985 344555554 5
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ +|+.|+..+. ++ .|.++++...+. ..+..+...+..+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555655555555667765 6677766554 33 466677665443 3444455567788999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEEEECCCCeeeEEEe
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 624 (1128)
+...... +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9876421 23479999998865433 22221 234468999999998877543 45565643 33344443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=113.56 Aligned_cols=162 Identities=19% Similarity=0.349 Sum_probs=115.0
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 410 SRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 410 ~~l~~spdg~~las~~~----------d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
..+.|+|+|++|+.-.. -+...+|-++..+ ....+ .+ ...++|.+++|+|+|+.+.+++|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-ec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999998886533 1346666664322 22211 12 234579999999999975566677788999
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||.+++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.+..+..... +...+..++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCCCCEEEE
Confidence 9997788888774 46778899977 67899988754 67999999865554443 3335789999999999998
Q ss_pred eeec--cCCCceEEEEeCCCCceeeEe
Q 001190 556 CGTS--KDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 556 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+... ...|+.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8752 1246778999974 5554443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=115.92 Aligned_cols=349 Identities=16% Similarity=0.194 Sum_probs=205.7
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCC--CCeEEEeccCCCCccEEEEEeccCcEE
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE--APVYSICPHHKENIQFIFSTAIDGKIK 521 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1128)
.++||.+.|++...-|-.. -+++.+.|.+++||- ..|+--..+. |. .+++++.+.. +...|+.|-..|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecceEE
Confidence 4779999999988888777 599999999999998 3343322222 33 4566666644 667899999999998
Q ss_pred EEecC----CCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC
Q 001190 522 AWLYD----TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 522 ~wd~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1128)
-+.+. ..........|...+..+.|+....++++.+. |..+.---.+.+..+..+.-... .....+.-
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~-- 165 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA-- 165 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--
Confidence 88553 33334455667789999999999999999874 44443222333333322211110 01111111
Q ss_pred CEEEEEECCCcEEEEECCCC--eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCcccc
Q 001190 598 NHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (1128)
.+.+.|...|.|.+-.+... .++..+. ++...+.+++|.|...+|.+|..|..+.+||+.........+.
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~------ 237 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ------ 237 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec------
Confidence 14555656677766655443 3444444 5566899999999999999999999999999865422222111
Q ss_pred ccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEE
Q 001190 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1128)
Q Consensus 676 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 755 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (404)
T KOG1409|consen 238 -------------------------------------------------------------------------------- 237 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee-----eeeccceeccC------CCcccccc
Q 001190 756 TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT-----ASAVPQHWLPS------SGLLMAND 824 (1128)
Q Consensus 756 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~~ 824 (1128)
+|...|..+...+--+.+++++.||.|.+|++........+-.. .-.++-.|+.. .--+....
T Consensus 238 ------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~ 311 (404)
T KOG1409|consen 238 ------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHH 311 (404)
T ss_pred ------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhh
Confidence 25566666666666677888888888888887653221111000 00011122221 11111100
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECC-------CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~-------~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v 897 (1128)
.. .-...+...+-+.-..+...+.+-.+++.|.- +...+..+..-...|+++.+.. .-.+|++++.|..|
T Consensus 312 cr--kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi 388 (404)
T KOG1409|consen 312 CR--KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVI 388 (404)
T ss_pred hh--hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEE
Confidence 00 01222322332222233333333334444421 1122333433344689999988 77789999999999
Q ss_pred EEEeccc
Q 001190 898 HIYNVRV 904 (1128)
Q Consensus 898 ~iwd~~~ 904 (1128)
+|||+..
T Consensus 389 ~iwd~~~ 395 (404)
T KOG1409|consen 389 KIWDVRS 395 (404)
T ss_pred EEEechh
Confidence 9999864
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=114.42 Aligned_cols=264 Identities=11% Similarity=0.194 Sum_probs=175.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccc-ccccccCccccceeccCCCcceEEEEEccCCC-
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPDGN- 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 419 (1128)
...+-|.+|.|..+|. +||||..+|.|.++.-..... ..+.+.. +.-..+...+.. --.-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 3456799999999999 789999999999997443221 0111110 000011111111 011245788999998654
Q ss_pred -EEEEEeCCCeEEEEEccCCCcce--------------------------------ecee-ecccccceeEEEEecCCCe
Q 001190 420 -YVGVAFTKHLIQLYSYAGSNDLR--------------------------------QHSQ-IDAHVGAVNDLAFAYPNKL 465 (1128)
Q Consensus 420 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~l~fs~d~~~ 465 (1128)
.++..+.|++|++|.+.....-. ..+. -.+|+--|+++.+..|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56677899999999886422100 0011 236778899999999998
Q ss_pred EEEEEecCCCeEEEEe--cCCCe--EEEecCC-----CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-----
Q 001190 466 LCVVTCGDDKLIKVWE--LSGRK--LFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----- 531 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd--~~g~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----- 531 (1128)
.++|+. |=.|.+|+ ...+. +..++.+ ..-|++..|+|... ..++-.+..|+|++.|++.....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 566654 88999999 44433 2333333 23578888998754 57777788899999999742211
Q ss_pred -eeecC----------CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC-CCCceeeEeccccC-----------Cc-
Q 001190 532 -VDYDA----------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KS- 587 (1128)
Q Consensus 532 -~~~~~----------~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~-----------~~- 587 (1128)
..... --..|..+.|+++|+++++-. --+|.+||+ ...+++.+++.|.. ..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 112678899999999999853 478999999 46677777776532 11
Q ss_pred --eeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 588 --NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 588 --v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899999999999999999999965543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=117.79 Aligned_cols=190 Identities=17% Similarity=0.283 Sum_probs=149.4
Q ss_pred cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE------cc--------------C
Q 001190 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP--------------D 417 (1128)
Q Consensus 358 ~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp--------------d 417 (1128)
.++|..+.||.++||+..+++......- ...-++.-++.+| +| |
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 3778889999999999998876543110 0011223333333 22 3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
-..|+-|...|.|.+|++..|+.-..+ .-.+|.+.|.++.++.+-. .|.|++.|+.+..|+ .+++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 457778889999999999998855432 3458999999999999888 899999999999999 888888999998889
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-----CCeEEEeeeccCCCceEEEEeC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.++++++ ||..+++++ +.|++||+++.+....+++|.++|+++.|..+ |.++++... .+..+.+|-+
T Consensus 147 ~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 99999876 678998887 78999999999999999999999999999877 788887654 3555677765
Q ss_pred CC
Q 001190 572 SE 573 (1128)
Q Consensus 572 ~~ 573 (1128)
..
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 43
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.9e-09 Score=109.38 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=167.9
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
.+||+.+|.+......-......-.-+.||.|++++|--..+.|.||+..+..++..-.-....|....|+| .+.+||.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAY 363 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAY 363 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEE
Confidence 345566666544322210122223346899999999988888999999988666544333566799999999 8889987
Q ss_pred EeCC-----CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC-------CC---cEEEEECCCCcccceeEE
Q 001190 891 GTED-----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-------DA---QLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 891 g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-------Dg---~i~iwd~~~~~~~~~~~~ 955 (1128)
-... ..+.+-.+.+++.+++-..|.-.=..+-|-.+|.+|+.--. -| .+-|+.+..... ....+
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVV 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceee
Confidence 6533 35778888888888776666544456778788888875321 11 234555443221 11111
Q ss_pred eecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecC-CcccccccccCCCCCCCeEEEEEeeCCCEEEEEe---c
Q 001190 956 HIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS-KMERIRQWTPQDALSAPISCAVYSCNSQLVFATF---C 1027 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~---~ 1027 (1128)
.. ...+...+|-|.|..+++-+ ..++.+|.++ +..........+ ....+.+.|||.|++++++. .
T Consensus 443 el-----ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 443 EL-----KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred ec-----chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEeccc
Confidence 11 15678899999999888743 4678999888 333333222222 45668999999999988754 5
Q ss_pred CCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc------EEEEcCC
Q 001190 1028 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS------VKVMEPS 1092 (1128)
Q Consensus 1028 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~------i~iWd~~ 1092 (1128)
.|.+..+|+.-......-.+ .| -..+.+.|.| .|++++++++-+. .++|++.
T Consensus 516 ~g~l~F~D~~~a~~k~~~~~-----------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 516 RGDLEFYDTDYADLKDTASP-----------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ccceEEEecchhhhhhccCc-----------cc-cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 78999999875333222221 22 2236789999 4999999987543 5677654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-10 Score=119.58 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=153.0
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe------c------------CCCeEEEEEecCCCe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs------~------------d~~~~~l~s~s~d~~ 476 (1128)
.|-+.|+|....||.++|||...++....+.....-.+.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567799999999999999999987654433222334445555552 1 112237888999999
Q ss_pred EEEEe-cCCCeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+++ ..|+....+. .|.++|.++.++. +-..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 8888777775 6899999998754 44689999999999999998888888888888899999999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-----CCEEEEE-ECCCcEEEEECCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 616 (1128)
++++ +.|.+||+++++.+..|.||.. .|.++.|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9874 5799999999999999999998 8999999876 6777764 3566677776544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-08 Score=112.75 Aligned_cols=307 Identities=10% Similarity=0.020 Sum_probs=182.3
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 587 (1128)
+..+++++.+|.+..+|..+++................. ++..+++++ .++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT----EKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc----CCCEEEEEECCCCcEeeeeccCce-e
Confidence 357888888999999998888888776655542223332 456666665 378999999999998877654322 1
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC---cceEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 588 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
.....+ .+..++.++.+|.|+.||.++|+.+........... ...... .+..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 111122 245788888899999999999998877654332100 011111 1246778888899999998877432
Q ss_pred cccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeE
Q 001190 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1128)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (1128)
...-... +.+.. ..-++.+.
T Consensus 214 W~~~~~~---------------~~g~~--------------------------------------------~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVAL---------------PKGRT--------------------------------------------ELERLVDV- 233 (377)
T ss_pred eeecccc---------------CCCCC--------------------------------------------chhhhhcc-
Confidence 2110000 00000 00000000
Q ss_pred EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccccc
Q 001190 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1128)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1128)
... ..+ .+..+++++.+|.+..||...++ .+|....+
T Consensus 234 ------------------~~~----p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DGD----PVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------CCc----cEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 000 011 13456677778888888754322 13332210
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~ 902 (1128)
.....+ .++..+++++ +|.+..+|..+++.+...... ........+ .+..|++++.+|.|+++|.
T Consensus 271 --------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 --------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred --------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEEC
Confidence 011122 2345555555 899999999999887665322 222233333 2457888999999999999
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iw 942 (1128)
.+|+.+.++..+...+..--...++ .|+.++.||.|..+
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999998887666544332222333 47778899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=117.47 Aligned_cols=241 Identities=12% Similarity=0.218 Sum_probs=170.2
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC-Ccce---eceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~-~~~~---~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.+.||+..|+.++--.+.+-+++++.|++|++|.+... ..+. ...++..|+.+|.++.|-.|-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 38899999999988888888999999999999998742 2222 3446889999999999999988 56665 899
Q ss_pred EEEEe-cCCCeEEEec-----CCCCCeEEEeccCCCCccEEEEE-eccCcEEEEecCCCCceeeec-----CCCCeEEEE
Q 001190 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~ 544 (1128)
|.+|| .-|+++..+. +..+.|.++ ++-+..+++.| +...+|+++|.+..+-...+. +....++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8888775332 223345544 34344566655 788999999988766554433 344578999
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE-EECCCCeeeEEE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~ 623 (1128)
++.+.|+.++.+-. .|.|.+.|.++|+.+..++...- ....++ .|..+.++....|..+.+ |....+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998874 88999999999999887775432 111122 244566777777888888 988777655544
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
..... +.. -.-.-|..++++.....+.+|.-
T Consensus 957 kpppe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 32221 111 11224566777777777777753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=133.39 Aligned_cols=227 Identities=19% Similarity=0.278 Sum_probs=168.7
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+...++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+.+
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 33445667899999999988 558999999999999998887643 21 2233 88999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec---CCCeEEEEe--cCCCeEEEecC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s---~d~~i~vWd--~~g~~~~~~~~ 492 (1128)
|.....+..||.+.+|.+.. + .+...+.|.....+..|.. . .+++++ +++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p-k---~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP-K---PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC-c---ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999883 2 3335778999999999986 3 466654 467999999 44443333378
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|.+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. +. ...+++++.. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999999977 458999999999999999988777665543 23 4556777764 8899999999
Q ss_pred CCceeeEeccccCCc-e----eEEEEeCCCCEEEEEECCC
Q 001190 573 EGTIKRTYAGFRKKS-N----GVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~-v----~~~~~~~~~~~l~~~s~dg 607 (1128)
....+.+++..+... + ..-.+-...++|++++.||
T Consensus 2399 ~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred ccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 988888777543210 1 1001112345677777776
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-08 Score=108.41 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=117.8
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
.++.++.++.|..+| .+|+.+............... ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 578888899999999 899988766544332222222 346788889999999999988888877665443222222
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
+ .+..++.+. .++.++.||..+|+.+..+....... .....+. +..++.+..+|.++.+|.++|+.+.
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 234555544 38889999999999887766533210 0111222 3477888889999999999998776
Q ss_pred EEecCCCC--CC---cceEEEcC--CCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
........ .. +..+.-+| .+..+++++.+|.+..||..++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 54321110 00 00111111 3457778888999999998776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-08 Score=120.69 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=163.6
Q ss_pred eEEEeccCCCeEEEE-e-CCeEEEEECCCceEEEEeeC--C------------CCCeeEEEEcCCCCC-EEEEEeCCCcE
Q 001190 835 PCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMS--P------------PPASTFLAFHPQDNN-IIAIGTEDSTI 897 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~--~------------~~~v~~l~~s~~d~~-~lasg~~dg~v 897 (1128)
..+++++++..+.++ . ++.|++||... ..+..+.+ . -.....+++++ ++. ++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 467888865544444 4 67899999864 44444332 1 12357899998 555 44555566789
Q ss_pred EEEecccceeeeccccc-----------------ccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEE---e
Q 001190 898 HIYNVRVDEVKSKLKGH-----------------QKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTI---H 956 (1128)
Q Consensus 898 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~---~ 956 (1128)
+++|..++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++........ .
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 222110 11235799999 566777778889999999987653211000 0
Q ss_pred ecCC-----CCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccccccc-----------cc--CC-----CCCCCeE
Q 001190 957 IPAG-----KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW-----------TP--QD-----ALSAPIS 1011 (1128)
Q Consensus 957 ~~~~-----~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~-----------~~--~~-----~h~~~v~ 1011 (1128)
...+ ........++++|++.+|++++ ++.|++||+.++...... .. .. .......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000 0113567899999998777654 789999999876531110 00 00 0012346
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCC-CCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS-TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.+++++||+++++-..++.|++||..++......... ..........+.-..+..+++++ +++++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 8999999998888888999999999988766443311 00111110112223578899999 689999999999999999
Q ss_pred CCCCCC
Q 001190 1091 PSESEG 1096 (1128)
Q Consensus 1091 ~~~~~~ 1096 (1128)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988763
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=130.09 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=166.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
.+.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4556678899999999999999999999999999999888765543 33 8999999999999 788888899999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.+.++....+.|......+.|.. ..+++++ .++.+.+||...... -.....|.+.++++++-|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 87888888888998888888754 3466653 568999998654333 234477888999999999999999998
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
. +|.|++||++..+++++++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 4 89999999999988887775 23 457899999999999999998877776653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-08 Score=94.89 Aligned_cols=271 Identities=11% Similarity=0.062 Sum_probs=167.8
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc---CCC-EEEEEeCCCeEEEEEccCCCcc
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 441 (1128)
.|.+.+|++...+.... ..+....+..+..+.|+- +|. .|+-+..+|.|.++.....+..
T Consensus 45 ~Gkl~Lys~~d~~~~~l----------------~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPL----------------DTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCcc----------------ceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 35677777766554321 011222455677777763 555 5666777899999987654332
Q ss_pred eeceeeccccc---ceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--EEecCCCCCeEEEeccCCCCccEEEEEe
Q 001190 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1128)
Q Consensus 442 ~~~~~~~~h~~---~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1128)
..+..+..-.- ...++.|++-+. -++++-.+|.+.+-+ ...... +.+++|+-+.+...|+... .+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecC
Confidence 22222222222 234678999888 688888899998666 444443 4889999999999997654 37999999
Q ss_pred ccCcEEEEecCCCCc-eee-ecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEE
Q 001190 516 IDGKIKAWLYDTMGS-RVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 516 ~dg~i~~wd~~~~~~-~~~-~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~ 591 (1128)
.|+.+..||++..+. ... ...|...|.++.-+| ++.++++|+. |-.|++||.+. ++++..-.. ++.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 999999999994442 222 345666788888776 5778888886 78899999984 555544332 2468888
Q ss_pred EEeCCCC-EEEEEECCCcEEEEECCCCeee---EEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEE-EEEcccC
Q 001190 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFK-ILANAIG 661 (1128)
Q Consensus 592 ~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~-iw~~~~~ 661 (1128)
..+|.-. .++.++.-...+|-+.+.+... .......+.+-+..-.|......+++++. |+.++ +|-.-++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8887543 3344444445566666544322 11111122222333344333456777653 56644 6755443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-08 Score=94.83 Aligned_cols=247 Identities=16% Similarity=0.115 Sum_probs=158.1
Q ss_pred CCCcEEEEEEeC---CCCcEEEEeeccCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fsp---dg~~lla~gs~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+.+..+.|.- +|...++-+-.+|.|.++.......... ..+.. .+-....-.++.|++-|
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 344566666652 4443456666788888887643322110 00000 00001134578899999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEEE-ecCCCC
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEA 495 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~~-~~~h~~ 495 (1128)
..++++..+|.+.+-+..... +.....++.|.-..+.+.|+..... ++++|++|+.+..|| . .++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998855544332 3333468899999999999876665 899999999999999 3 5555544 567888
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC--eEEEeeeccCCCceEEEEeCCC
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.|.++.-++. ...+|++|+.|..|++||.+.......-...++.|..+..+|.-. .++++- -+-.++.+...
T Consensus 212 GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM-----h~G~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM-----HNGAKILDSSD 285 (339)
T ss_pred ceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH-----hcCceEEEecc
Confidence 9999987654 568999999999999999997766665555667899999998544 333332 22245555544
Q ss_pred Cce-----eeEeccccCCceeEEEEeCC----CCEEEEEE-CCCcEE-EEECCC
Q 001190 574 GTI-----KRTYAGFRKKSNGVVQFDTT----QNHFLAVG-EDSQIK-FWDMDN 616 (1128)
Q Consensus 574 ~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~~~s-~dg~i~-iwd~~~ 616 (1128)
+.. ....+.|.. +++..| ...|++++ .|+.++ +|-.-+
T Consensus 286 ~~~e~~~~~~s~~~hdS-----l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDS-----LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccchheeeeccccccc-----eeeccccccccceeeeeeccccceeeeeeecc
Confidence 322 223333333 444433 24577765 455544 554333
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-09 Score=114.16 Aligned_cols=270 Identities=16% Similarity=0.246 Sum_probs=179.7
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-ee---c--------------------------ccccc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RL---V--------------------------SKPFK 386 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~---~--------------------------~~~~~ 386 (1128)
....+.-.+++.++.++|.|+- +|.++.-|. .|-|+...- .. + ...--
T Consensus 17 kslsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 17 KSLSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred ceeEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 3444555667788888888874 455554442 233332211 00 0 01123
Q ss_pred cccccccCccccceeccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCe
Q 001190 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1128)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~ 465 (1128)
+|.++.+......-++.||+..|+.+.|.|. -..||+++.|..+..||+.+... .+..+..-...-..++|+....
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p- 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP- 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc-
Confidence 4666666666666789999999999999985 45889999999999999988543 3333444555678899987665
Q ss_pred EEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCeEE
Q 001190 466 LCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCT 542 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~ 542 (1128)
.+.+.+..+.|.+|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....+|.
T Consensus 172 -~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 172 -NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred -chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcce
Confidence 355566778999999 55678899999999999998865433 46889999999999999766554432 33444677
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEE---------eCCC-CceeeEeccccCCceeEEEE--------eCC--CCEEEE
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEW---------NESE-GTIKRTYAGFRKKSNGVVQF--------DTT--QNHFLA 602 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~w---------d~~~-~~~~~~~~~~~~~~v~~~~~--------~~~--~~~l~~ 602 (1128)
.-.+.|-|+-...--. .|+..+.++ +..+ .+++.+|.||.+ .|.-.-| .-+ .-+|++
T Consensus 250 ~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred eccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEE
Confidence 7777776653332211 123344443 3333 467899999987 3322222 111 237999
Q ss_pred EECCCcEEEEECCC
Q 001190 603 VGEDSQIKFWDMDN 616 (1128)
Q Consensus 603 ~s~dg~i~iwd~~~ 616 (1128)
-+.|..+++|-+.+
T Consensus 327 WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 327 WSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCCceEeeeccH
Confidence 99999999998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-08 Score=106.99 Aligned_cols=115 Identities=14% Similarity=0.343 Sum_probs=87.6
Q ss_pred eecCCCcEE-EEEEeCCCCcEEEEeec----cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 340 SLHQGSTVI-SMDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 340 ~~~h~~~V~-~v~fspdg~~lla~gs~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+...+.|. -..|+|... ++|+++. .|.|.|| .++|++...-. -.-.+++++|
T Consensus 10 E~~Dsdavsti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt--------------------~P~hatSLCW 67 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVT--------------------YPVHATSLCW 67 (1416)
T ss_pred ecccccccccccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccc--------------------cceehhhhcc
Confidence 333444444 345999988 7787754 5789998 46777543211 1224567999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+|..-.||.|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|.
T Consensus 68 Hpe~~vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 68 HPEEFVLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred ChHHHHHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999999999999988755332 3457999999999999999 899999999999998
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-07 Score=104.02 Aligned_cols=214 Identities=14% Similarity=-0.003 Sum_probs=127.7
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeec---cCeEEEEEccCCceecccccccccccccCccccceecc
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1128)
+|-.+..-......+.. ..+....|||||+++++..+. +..|.++|+.+|+... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55554433333333333 378899999999864443233 3578899998876542 33
Q ss_pred CCCcceEEEEEccCCCEEEEEe-C--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAF-T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~-~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~ 478 (1128)
...+.+...+|||||+.|+... . +..|.++|+.+++..+ +..+.+......|+|||+.+++++ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 3455667788999999887543 2 3468888888876332 333443344568999999744443 3333 577
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---------CcEEEEecCCCCceeeecCCCCeEEEEEEcCC
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
+.|..+.....+...... ...|+| +|+.|+..+.. ..|.+.|++++... .+... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCC
Confidence 777433333333222111 236655 66777666543 25667777665443 33322 23346889999
Q ss_pred CCeEEEeeeccCCCceEEEEeCCC
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
|+.++..... .+...+.+.++..
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCC
Confidence 9998887643 2345577777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-07 Score=111.79 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=159.6
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeec-----------ccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 410 ~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~-----------~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
..++++++ |..+++-..++.|++||..+. .+....... ++-..-..+++.+++.. +.++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 556666677889999998653 332211100 01123578999998873 33444445789
Q ss_pred EEEecCCCeEEEecCC-----------------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---
Q 001190 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--- 537 (1128)
+++|..+..+.++.+- -..-+.+++++. ++.++++.+.++.|++||...+... .+.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9999544555555321 012356788653 4466777778899999998664332 11111
Q ss_pred ------------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc------------cC--------
Q 001190 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RK-------- 585 (1128)
Q Consensus 538 ------------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------~~-------- 585 (1128)
......++++|+|+.|+++.. +++.|++||+.++.......+. .+
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 123567999999997766553 5789999999876532111000 00
Q ss_pred CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-----------CCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02346889999998888889999999999887765433210 1122457899999999888888899999
Q ss_pred EEEcccC
Q 001190 655 ILANAIG 661 (1128)
Q Consensus 655 iw~~~~~ 661 (1128)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=112.96 Aligned_cols=219 Identities=16% Similarity=0.210 Sum_probs=160.3
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-------ceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..++..|..+|.++.|-.+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999887666 667788999999999999863 24667889999999999999999898865 78
Q ss_pred cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC--CCEEEEE-e-cCeEEEEecCCcccccccccCCC--CCCCeE
Q 001190 938 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVV-H-ETQLAIYDASKMERIRQWTPQDA--LSAPIS 1011 (1128)
Q Consensus 938 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~ 1011 (1128)
.|.+||.--+..+....- ....+.+..+..-++ ...++++ + +.+++++|.+.++....+....+ ...-+.
T Consensus 805 giHlWDPFigr~Laq~~d----apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMED----APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhc----CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 899999877765442211 111134444444443 3444443 3 88999999999988887765422 246689
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE-Ec
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV-ME 1090 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i-Wd 1090 (1128)
+++..+.|++++++-..|+|.+.|..+|+++...++.. . ..+-++. | ..+.++....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-----------c-dllqlaa-p-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-----------C-DLLQLAA-P-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-----------c-hhhhhcC-c-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999988777321 1 1122322 4 2466788888888888 98
Q ss_pred CCCCCCCcccCCCC
Q 001190 1091 PSESEGKWGVSPPV 1104 (1128)
Q Consensus 1091 ~~~~~~~w~~~~p~ 1104 (1128)
..++-+.....||.
T Consensus 947 aldgimh~q~kppp 960 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPP 960 (1034)
T ss_pred hcCCeeeeccCCCC
Confidence 88886655544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-07 Score=102.85 Aligned_cols=566 Identities=11% Similarity=0.090 Sum_probs=275.0
Q ss_pred eEEEEEccCCCEEEEEe----CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 409 VSRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 409 V~~l~~spdg~~las~~----~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
-+-..|+|...++|+++ ..|.|.||- ++|++-+.. +..- .+++++|+|..- +|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 33457999999998886 357888874 556644321 2222 366799999887 788998899999999 44
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--C---CC-eEEEEEEcCCCCeE----
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P---GH-WCTTMLYSADGSRL---- 553 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~---~~-~i~~~~~s~~g~~l---- 553 (1128)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+....... | .. ...+..+++++.-+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444445567999999999976 678999999999999998875443332221 1 11 23455566664321
Q ss_pred --EEeeeccCCCceEE-EEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 554 --FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 --~~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
++.+ | +..+- .++.+.....+... -.-.|+|..++.++.+|+|+-.| ++|+..........
T Consensus 169 KaaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccch--
Confidence 1221 1 21111 22211110000000 11246788889999999998887 35666555554332
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcc-cCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
..+-|.+.-.-+++--.+-.+.++-.. +|..... ..+.++ |+.
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~--------------~~vk~s--gk~------------------ 276 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEER--------------CAVKVS--GKL------------------ 276 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchHHh--------------hhhhhc--ccc------------------
Confidence 345566644444444444444433322 1210000 000000 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
| ...|. ++++...|.++ . ..+. . ......+.+++++..+..+..+...|.+.
T Consensus 277 -------G-----grqGg-iA~sEssGvLr---~-----~eKy---g----~e~ge~~~c~cY~~~~~~l~agt~~gnv~ 328 (1416)
T KOG3617|consen 277 -------G-----GRQGG-IACSESSGVLR---K-----SEKY---G----LELGEGILCMCYGEKEIRLWAGTKEGNVT 328 (1416)
T ss_pred -------C-----CccCc-ccccccccccc---C-----Ccch---h----hhcCCceEEEEEeccceEEEecccCCcEE
Confidence 0 00010 12221112110 0 0000 0 11446789999999999999999999999
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM 869 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 869 (1128)
+|.-....+ ........|.+.+... ..+.|+.+.|.|-...+++-+...|.+..-+. .+.
T Consensus 329 ~w~~v~~~f------~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~-----l~~ 388 (1416)
T KOG3617|consen 329 IWLDVNKGF------QGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNTEEDVVLLGENS-----LTV 388 (1416)
T ss_pred EeeecCccc------cCCCCcceEEecCchh---------hccceEEEEeccccchhhhhhhhheeeeccCc-----hHH
Confidence 996332211 1112344555543322 34667888887755555544322222211100 011
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
.|.+...++.-+. ..+.+-...+|.. ..++ ..-++.+++.+.+ .|+ .....+|..|++.+...
T Consensus 389 ~h~~~~~A~q~ss------------~S~~L~hc~sGv~-~~l~-~~~~~~gi~l~e~--~lv-vwNgr~v~~y~lq~SG~ 451 (1416)
T KOG3617|consen 389 KHRGKMAAIQTSS------------NSFTLLHCTSGVS-QDLK-LSIPSAGICLGEK--QLV-VWNGRTVVTYDLQTSGS 451 (1416)
T ss_pred HHhhhhHHhhhcC------------CceEEEeeccchh-hhhh-hccchhhheeccc--eEE-EEcCceEEEEEecccch
Confidence 1222222222221 2222222112211 1111 1223445555433 233 34456788888864321
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg 1029 (1128)
........+. .....++....+- .+.....|.++.+. |.....+..... .+.|.-+.+ -|.++.++...+
T Consensus 452 la~~~~~tF~----cet~~la~~nqN~--ycies~~Vfvrt~q-Gtv~q~i~~sei-Eg~~~~ldi--~g~~l~v~t~~~ 521 (1416)
T KOG3617|consen 452 LATIQCTTFS----CETTSLAIVNQNL--YCIESDKVFVRTLQ-GTVRQEISLSEI-EGVVVLLDI--MGELLIVQTVST 521 (1416)
T ss_pred hHHHhhhhhc----cccchHhHhhcce--EEeccCcEEEEecc-hhhhhhccchhc-cCceehhhh--ccceeEEeehHH
Confidence 1111111111 1122233333322 22233445555443 222222222211 334444444 378899888888
Q ss_pred cEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEECC----CcEEEEcCCCCCCC-cccCCC
Q 001190 1030 NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTD----GSVKVMEPSESEGK-WGVSPP 1103 (1128)
Q Consensus 1030 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~~d----g~i~iWd~~~~~~~-w~~~~p 1103 (1128)
.++-+|+..-+....... .+..... ...++...+..+..... -++.+..+ .++.+||++.++.. -+...|
T Consensus 522 ~~k~~dvsr~e~ka~~~~-~s~~~~~---d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ 597 (1416)
T KOG3617|consen 522 VAKRLDVSRAELKAVSYF-SSDRGMT---DTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEP 597 (1416)
T ss_pred HHHHhhhhhhcccccccc-ccccccc---CCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCc
Confidence 888888876655443321 1111110 12223333333332222 22333333 25899999988643 233456
Q ss_pred CCCCccCCCCC
Q 001190 1104 VDNGILNSRTT 1114 (1128)
Q Consensus 1104 ~~~~~~~~~~~ 1114 (1128)
..|-+--+.++
T Consensus 598 ETNakkEs~ts 608 (1416)
T KOG3617|consen 598 ETNAKKESSTS 608 (1416)
T ss_pred cccccccccCC
Confidence 65555444333
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-06 Score=86.54 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=142.6
Q ss_pred EEEeccCCCeEEEEeCCeEEEEECCCc--eEEEEee---CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 836 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.++.+.||++||+..|..|.|-..++. ..+.... .....-..++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367889999999999999888766532 1222222 2334578999999 9999999999999999999854432 2
Q ss_pred cc-c------cccCeeEEEEcCCC------CEEEEEcCCCcEEEEECCCCc---ccceeEEeecCCCCCCCccEEEEcCC
Q 001190 911 LK-G------HQKRITGLAFSTSL------NILVSSGADAQLCVWSIDTWE---KRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 911 l~-~------h~~~V~~l~~s~d~------~~l~s~~~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
+. + -+..|.++.|.+-. ..|+....+|.++=|-+..+. -.....+. ...+.+..+..+.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCCCceeEEEEcCC
Confidence 22 1 23567778775432 245666778888877764321 11122222 33344478999999999
Q ss_pred CCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEE--EEEecCCc------EEEEecCCCceEEE
Q 001190 975 QVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLV--FATFCDGN------IGVFDADTLRLRCY 1044 (1128)
Q Consensus 975 ~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l--~t~~~dg~------i~vwd~~~~~~~~~ 1044 (1128)
.++|++++ ...-..... . ...+++-..-.+.-|. ++..+|+. -.+|.+-+.....+
T Consensus 159 h~LLlVgG~~~~~~~~s~a-~-------------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKA-S-------------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCEEEEeccCCCCCccccc-c-------------ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 99988864 111000000 0 1122222221111111 11222221 23444444333332
Q ss_pred eCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC--CCCcccC
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES--EGKWGVS 1101 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~--~~~w~~~ 1101 (1128)
.. .....+..+.-+| |+.+|++...+|.|.+|++.+- +.+|...
T Consensus 225 ~~------------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 225 QG------------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cc------------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22 3445677888899 7999999999999999999854 5568775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-07 Score=94.12 Aligned_cols=225 Identities=14% Similarity=0.146 Sum_probs=142.2
Q ss_pred CCeEEEEECCCceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 851 GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|.|..||..+|+.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+++..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 578999999999998887641 122222223 2 445666778999999999999998877664 222222122 2345
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCC-
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL- 1006 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h- 1006 (1128)
.++.++.|+.|..+|..+|+.+........... ..........++..++++. ++.+..+|..+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 566666888999999999998666333221111 1112223333366677665 899999999999997776653211
Q ss_pred CCC------eEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1007 SAP------ISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1007 ~~~------v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
... +..-....++ .++.+..++. +.+ |+.+|+.+.... . +.. .. .... +++.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-----------~~~--~~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I-----------SGI--YS-LPSV-DGGTLYV 217 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S-----------S-E--CE-CEEC-CCTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C-----------CCc--cC-Ccee-eCCEEEE
Confidence 111 1222233345 7777777886 555 999999765332 1 111 11 1234 5677887
Q ss_pred EECCCcEEEEcCCCCCCCcc
Q 001190 1080 GLTDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~~~w~ 1099 (1128)
++.++.|..||+.+++.+|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999999995
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.5e-07 Score=90.91 Aligned_cols=185 Identities=11% Similarity=0.130 Sum_probs=129.6
Q ss_pred EEEeccCCCeEEEEe------CCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe----------------
Q 001190 836 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 892 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~---------------- 892 (1128)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..|.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999884 2679999999 7888999988887788899999 887776653
Q ss_pred --CCCcEEEEecccceeeec--c--cccccCeeEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcccceeEEeecC
Q 001190 893 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKSVTIHIPA 959 (1128)
Q Consensus 893 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~~~Dg-------~i~iwd~~~~~~~~~~~~~~~~ 959 (1128)
.+-++...|..+|+++.+ + ..|...|..+++.++|..++..-..| .|-+++-.. ....+......
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 233466677888888766 4 34888999999999987666543322 244444333 11111111000
Q ss_pred -CCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 960 -GKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 960 -~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
......+-+|++++++.++++++ .+.+.+||..+++.+..... ..+..++-.+++ ++++.+ .|.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eEEeCC-Ccc
Confidence 01116788999999999998875 78999999999999887664 345666666666 555554 444
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=94.96 Aligned_cols=249 Identities=16% Similarity=0.202 Sum_probs=154.4
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccc------------cceeEEEEecCCCeEEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~fs~d~~~~~l~s 470 (1128)
....|+++.|...|.|||+|...|.|.+|.-+... ..+-+..+++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999876432 122223455664 3588899988766556677
Q ss_pred ecCCCeEEEEecCCCeEEEec----------CCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCCCCceeeecCCCC
Q 001190 471 CGDDKLIKVWELSGRKLFNFE----------GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 471 ~s~d~~i~vWd~~g~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
.+.|++|++|..-.+.+.... ...+++++..-. .+--.+ .|..|.. ..+......|..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l------~lprls~hd~iiaa-----~p~rvyaNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL------LLPRLSEHDEIIAA-----KPCRVYANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh------hcccccccceEEEe-----ccceecccccee
Confidence 778999999993222221111 112222221100 000000 1111111 112222345677
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc---eeeEeccccC----CceeEEEEeCCC-CEEEEEECCCcEEE
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIKF 611 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~----~~v~~~~~~~~~-~~l~~~s~dg~i~i 611 (1128)
.|.++.|+.|.+.++++- +-.|.+|++.-.. .+..++.|.. ..|++..|+|.. ..+...+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 899999999999999874 8889999876432 2222333321 246777888865 55666778999999
Q ss_pred EECCCCee------eEEEec--------CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccC
Q 001190 612 WDMDNVNI------LTSTDA--------EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 612 wd~~~~~~------~~~~~~--------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
-|++...+ +..... .+-...|..+.|+++|+++++-+ --++++||.+..+.++++..-
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeech
Confidence 99874321 111110 11233578899999999988765 458999999887666665533
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-06 Score=82.79 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=135.7
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCC--CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~ 489 (1128)
++.++||+.||.. .|..|.|=..+.. ..+......+...-.-+-++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 6778999999877 4556666554432 11121112223334567899999999 89999999999999977777766
Q ss_pred ecCCC-------CCeEEEeccCCCC----ccEEEEEeccCcEEEEecCCC-----CceeeecC---CCCeEEEEEEcCCC
Q 001190 490 FEGHE-------APVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (1128)
Q Consensus 490 ~~~h~-------~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~---~~~~i~~~~~s~~g 550 (1128)
+.... ..|..+.|..... ...|++...+|.++-|-+..+ .....+.. ....|.++.+.|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 64422 3456665543221 125677778888888876332 22223322 24589999999999
Q ss_pred CeEEEeeeccCCCc-------eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 551 SRLFSCGTSKDGDS-------FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~-------~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
++|+++|....+++ -+..|.+-++.+ ......+.+...-... .+..+|.+-+.+.....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~---~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASS---KRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCccccccc---cccceeeccceeeeecc
Confidence 99988875332221 122232221111 1100011111110011 11234444333322211
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
......|..|..||||..||+...+|.|.+|++.+-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 123447899999999999999999999999999764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.3e-08 Score=100.31 Aligned_cols=164 Identities=17% Similarity=0.148 Sum_probs=112.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 424 (1128)
.++.+.++|+|+ ++|++..+....++++..... ..++++. ..+.. .-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~---------~~v~~---~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV---------SCVPK---RPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE---------eeccc---CcceeeeeeccceEEEEe
Confidence 456677788888 888888888877888765443 1122211 01111 22333443444444443
Q ss_pred --eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-ecCCCCCeEEE
Q 001190 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSI 500 (1128)
Q Consensus 425 --~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-~~~h~~~v~~~ 500 (1128)
+....+.+|....+.+.. +-||-..+++++|+||++ +++++..|..|+|-. ..-..+.. ..||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 455567777766554432 569999999999999999 899999999999977 33333433 35799999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeec
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1128)
++.+ +..|++++.|+++++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 3579999999999999999888775444
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-06 Score=94.32 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=123.3
Q ss_pred ceEEEEEccCCCE-EEEEeC---CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC--CeEEEEe
Q 001190 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (1128)
Q Consensus 408 ~V~~l~~spdg~~-las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d--~~i~vWd 481 (1128)
.+....|||||+. ++..+. +..|.++|+.+|+... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 665443 3468999998886543 3334555667889999986 34444444 4677778
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
..+.....+..+.+......|+| ||+.|+-.+ ..+ .|.+.|+++++...... .+.. ...|||||+.++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 44444555654444333446766 666555554 334 46666776555433222 2221 2489999999988765
Q ss_pred ccC-----CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCe
Q 001190 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVN 618 (1128)
Q Consensus 559 ~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~ 618 (1128)
..+ +...|.+.|+.++.......+ . ......|+|||+.++..+.+ ..+.+.++....
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 321 125788999988865433322 1 23357899999988876632 346677775543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-05 Score=84.87 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=140.4
Q ss_pred eEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 835 PCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 835 ~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
.+++|.+ ++.++.+.- .+.|..|+..+++... +.... ...+++. + ++.++++ .. +.+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v~-~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYVA-DS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEEE-ET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEEE-Ec-CceEEEecCCCcEEEEe
Confidence 3578887 555555554 7889999998876643 22222 6777887 5 6665554 43 44566698888544333
Q ss_pred cc-----cccCeeEEEEcCCCCEEEEEcCC--------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 912 KG-----HQKRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 912 ~~-----h~~~V~~l~~s~d~~~l~s~~~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
.. .....+.+++.++|++.++.... |.|..++.. ++... ..... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCc------ccccceEECCcchhe
Confidence 22 34568899999999988876543 446666666 34222 22221 556899999999988
Q ss_pred EEEe--cCeEEEEecCCccc-c---cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCC
Q 001190 979 LVVH--ETQLAIYDASKMER-I---RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 979 ~~~~--d~~i~v~d~~~~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
++++ .+.|..|++..... + ..+.......+....+++..+|++.++....+.|.+++.+ |+++..+..+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 8764 77888888864322 1 1221111102347899999999988887789999999987 9988888822
Q ss_pred CcccCCCCccceEEEEEecCCCC-EEEEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPN-QFAIG 1080 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~-~l~s~ 1080 (1128)
...+++++|...+.+ +++|.
T Consensus 224 --------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 --------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------SSSEEEEEEESTTSSEEEEEE
T ss_pred --------CCCEEEEEEECCCCCEEEEEe
Confidence 125689999533444 44443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0014 Score=76.34 Aligned_cols=600 Identities=13% Similarity=0.091 Sum_probs=291.0
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 417 (1128)
.++..+-..|+.+-++| +|.+||.-|.=.+-.+.+......+ +.+. ..+. .-++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~il-----------et~~-NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VVIL-----------ETFV-NLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hhhh-----------hhcc-cccceeeEEEEeccc
Confidence 34556667788888888 5788988776666666554332110 0000 0011 2347777776432
Q ss_pred --CCEEEEEe---CCCeEEEEEccCCCcceeceeecccccceeEEE--EecCCCeEEEEEecCCCeEEEEecCCCeE-EE
Q 001190 418 --GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN 489 (1128)
Q Consensus 418 --g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-~~ 489 (1128)
+..+++|+ .||++++..-.-|-.......+.| -..++.+. +.++-..+++++-. + .-++...+++.. ..
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEec
Confidence 34566664 488899876543322111123555 44577777 54432221333333 2 233444333321 12
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
..+.......+..+.- ++..|+=. ....||+++-. +....+...+.. +..+.+.+...++.++ +++.+...
T Consensus 444 ~~gf~~~~~Tif~S~i-~g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~~~-ti~~~~~n~sqVvvA~----~~~~l~y~ 514 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCSTI-NGNQLVQV-TSNSIRLVSSA--GLRSEWRPPGKI-TIGVVSANASQVVVAG----GGLALFYL 514 (1096)
T ss_pred cccccccCceEEEEcc-CCceEEEE-ecccEEEEcch--hhhhcccCCCce-EEEEEeecceEEEEec----CccEEEEE
Confidence 2222233333333322 22222222 22456666543 233334434443 3333334444555554 25666666
Q ss_pred eCCCCceeeEeccccCCceeEEEEeCCC------CEEEEEECCCcEEE-EECCCCeeeEEEecCCC--CCCcceEEEcCC
Q 001190 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKF-WDMDNVNILTSTDAEGG--LPNLPRLRFSKE 640 (1128)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~~~--~~~v~~v~~sp~ 640 (1128)
++..+.+...........+.|+.++|-+ +.++.|..+..+.+ .-..+...+........ ...|.-..+-.|
T Consensus 515 ~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 515 EIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred EeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 7766654333333333468888888642 26677765544443 33444444433322221 223444455567
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecc------cCCCCCccc
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER------SSPVRPSPI 714 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~------~~~~~~~~~ 714 (1128)
..+|.++..||.+.-+.+....-.....+..... ..|+.--.|+..++..+...+.....+-. ..++. ...
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls-~ke 671 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS-LKE 671 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc-hHH
Confidence 8899999999998876655442222221111111 11222223332222211111111111100 00000 000
Q ss_pred ccCCCCCCCCCC-CCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 715 INGVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 715 ~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
+...+.-.++.. ..++.+ ..+.+++..++... .....++| -......+++.+....+.+.+.......=
T Consensus 672 v~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iq---kl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~~~~-- 741 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQ---KLHIRTVP----LGESPRRICYQESSLTFGVLSNRIESSAE-- 741 (1096)
T ss_pred hhhhcccccccCCceEEEe-cCCceEEEEecchh---hcceeeec----CCCChhheEecccceEEEEEecccccchh--
Confidence 011111111111 122222 22555555554322 22222222 12344566666644444443332111100
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccc-cccCCCCCCCeeEEEeccC-CCeEEEEe-----------CCeEEEEECC
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d-g~~la~~~-----------dg~i~vwd~~ 860 (1128)
..+.......++++|..+-+.+.. .+...+....+.++.|..| +.++++|. .|.|.||...
T Consensus 742 ------~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 ------YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ------hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 001111222344555555443221 1111112233555568877 77887773 1678888887
Q ss_pred CceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCc
Q 001190 861 TFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1128)
Q Consensus 861 ~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~ 938 (1128)
.+..++....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|..++..+...-.|..++.|.-=+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 74443333222 3345554433 6777764 4678999999999888887889999999999999999999988887
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
+.+-..+..+-. + ......-.+.+.+.+.+-.+..++.+-..+.+.+....
T Consensus 892 itll~y~~~eg~--f-~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 892 ITLLQYKGDEGN--F-EEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEEEeccCCc--e-EEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 777665543311 1 11122222367778888888777777666666665444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-06 Score=94.07 Aligned_cols=309 Identities=9% Similarity=0.039 Sum_probs=168.9
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC----------eE-EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----------~i-~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.+|.+.-+|.++++..+....... .+ ..+.. ++..++.++ .++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 4666677777777777777777666544321 00 01111 344555554 3788999999999988
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC--CCCEEEEEEcCCcEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK--EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~~~dg~i~i 655 (1128)
.+...... ......+ .+..++.++.+|.|+-+|.++|+.+.............. .-+| .+..++.++.+|.+..
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence 87765432 1111122 245777888899999999999999887764321000000 0112 2335677778888888
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
+|..++....+..... +.+..
T Consensus 220 ~d~~~G~~~W~~~~~~---------------~~~~~-------------------------------------------- 240 (394)
T PRK11138 220 VLMEQGQLIWQQRISQ---------------PTGAT-------------------------------------------- 240 (394)
T ss_pred EEccCChhhheecccc---------------CCCcc--------------------------------------------
Confidence 8888774322110000 00000
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceecc
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1128)
..-++++. ...++ + .+..+++++.+|.+..+|...++ .+|..
T Consensus 241 ~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~ 282 (394)
T PRK11138 241 EIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR 282 (394)
T ss_pred chhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence 00000000 00010 1 12345555666666666543221 13332
Q ss_pred CCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC-CCeeEEEEcCCCCCEEEEEeCC
Q 001190 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~lasg~~d 894 (1128)
..+ . ...+.. .++..++...+|.+..+|..+|+.+....... ....+..+. + ..|+.++.|
T Consensus 283 ~~~-----------~---~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~ 344 (394)
T PRK11138 283 EYG-----------S---VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSE 344 (394)
T ss_pred cCC-----------C---ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCC
Confidence 111 0 111222 23344444448999999999998765543211 122333332 3 456778999
Q ss_pred CcEEEEecccceeeecccccccCeeE-EEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 895 STIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
|.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999988776543333332 222 2446777899999887764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=83.34 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=148.0
Q ss_pred CCCeeEEEecc-CCCeEEEEe-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEcCCCCCEEEEEeC-----CCcEEEE
Q 001190 831 EEAVPCIALSK-NDSYVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTE-----DSTIHIY 900 (1128)
Q Consensus 831 ~~~v~~~~~s~-dg~~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~lasg~~-----dg~v~iw 900 (1128)
+.....++.+| ++..++.+. -|+ ..+||..+++....+....+. .-.-.||+ ||++|.+.-. .|.|-||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence 34455788889 556667776 354 899999999998887655444 23578999 8998887643 4789999
Q ss_pred ecc-cceeeecccccccCeeEEEEcCCCCEEEEEcC------------------CCcEEEEECCCCcccceeEEeecCCC
Q 001190 901 NVR-VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------------------DAQLCVWSIDTWEKRKSVTIHIPAGK 961 (1128)
Q Consensus 901 d~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~ 961 (1128)
|.. +.+.+.++..|.-.-..+.+.|||+.|+.+-. +..+..-|..+|+.+....+. ...
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDL 160 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccc
Confidence 999 66888888877666678889999987776521 234566677788765554332 222
Q ss_pred CCCCccEEEEcCCCCEEEEEe-cC-------eEEEEecCCcccccccccCC----CCCCCeEEEEEeeCCCEEEEEe-cC
Q 001190 962 TPTGDTRVQFNADQVRMLVVH-ET-------QLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CD 1028 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~-d~-------~i~v~d~~~~~~~~~~~~~~----~h~~~v~~l~~s~dg~~l~t~~-~d 1028 (1128)
....++.+++.++|..++... .+ -+.+++- ++.+..+.... .-..-+-+|+++.+|.++++.+ .-
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 236799999999999888753 11 1334433 33233322211 1146688999999999887655 78
Q ss_pred CcEEEEecCCCceEEEeC
Q 001190 1029 GNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~~~ 1046 (1128)
+.+.+||..+|+++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 899999999999988776
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=90.67 Aligned_cols=183 Identities=16% Similarity=0.231 Sum_probs=115.9
Q ss_pred ccEEEEEEecCc--ceEEEeeccceeEeeeccccCC-------------CC-CCceeeeeccceeccCCCc-ccc---cc
Q 001190 765 SKVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQ-------------NP-SGKATASAVPQHWLPSSGL-LMA---ND 824 (1128)
Q Consensus 765 ~~i~~l~~s~~g--~~l~~~~~dg~i~lw~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~-~~~---~~ 824 (1128)
..|..+.|..++ ..++..+.|.+|++|.+..... .| .|..+...++.+-.+.... .+. ..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 456666666554 3467778899999999876521 11 1111111111111111100 000 01
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEeeCCCC-----CeeEEEEcCCCCCEEEEEeCCCc
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFMSPPP-----ASTFLAFHPQDNNIIAIGTEDST 896 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~~~~~-----~v~~l~~s~~d~~~lasg~~dg~ 896 (1128)
.....|...+.++.|..|.+.++++.|=.|-+|+++--.. +-.++.|.. -|++..|+|.....+...+..|+
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1123488889999999999999999999999998863221 223333433 48899999977888888999999
Q ss_pred EEEEeccccee------eec----------ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q 001190 897 IHIYNVRVDEV------KSK----------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1128)
Q Consensus 897 v~iwd~~~~~~------~~~----------l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~ 948 (1128)
|++-|++...+ +.. +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 99999974311 111 1223356788899999999887765 479999987643
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-05 Score=91.89 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=114.0
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCC--CeE-----EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 538 (1128)
.++.++.++.+.-+| .+|+.+-+...... ... .+.-.+.-++..++.++.+|.+..+|.++++..+......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999 78888765542210 000 0000011123567788899999999999999888776654
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
....+..+. ++ .++.+. .++.++.+|..+|+.+..+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 444443 37889999999999988776432100 011111 1346777888999999999
Q ss_pred CCCeeeEEEecCCCC--CC---cceEEEcC--CCCEEEEEEcCCcEEEEEcccCc
Q 001190 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999877655321110 00 11111223 34567777778888888887763
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-06 Score=90.91 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=174.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-..+. -...+..|-+.|.+++.|-||.++
T Consensus 7 mhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE----------------fVKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE----------------FVKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee----------------ehhhhHHHHHHHHhhhccccceeE
Confidence 478888888776553 78999999999999854311110 001266789999999999999999
Q ss_pred EEEeC-CCeEEEEEccCCCcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe--cCCCe-EEEecCCCCC
Q 001190 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRK-LFNFEGHEAP 496 (1128)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd--~~g~~-~~~~~~h~~~ 496 (1128)
.|++. |..++++|+++-..+.-+ .+..-.+.+..+ .++. -..++.++.-.++.+.|+| .++.+ ...-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99887 999999999876544211 122222222211 1221 1112445555678999999 34423 3444569999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCC------CCceeee---------cCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDY---------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~---------~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
|..+.+.+. +..+++....|.|.-|..+. ......+ ........++.|+|+|..+...+
T Consensus 147 V~~i~y~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---- 220 (558)
T KOG0882|consen 147 VKKIRYNQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---- 220 (558)
T ss_pred eEEEEeecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC----
Confidence 999998774 45788998999999998763 1111111 11233578999999999999887
Q ss_pred CCceEEEEeCCCCceeeEecc--------------------------------ccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 562 GDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
.|..|++++..+|++++.+.. +.......+.|...+++|+.++-= .|
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gi 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GI 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eE
Confidence 489999999999887765432 111123346788889999988764 37
Q ss_pred EEEECCCCeeeEEEe
Q 001190 610 KFWDMDNVNILTSTD 624 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~ 624 (1128)
++.++.++..+..+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 889998888777653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-07 Score=94.41 Aligned_cols=159 Identities=12% Similarity=0.041 Sum_probs=108.1
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ecCeEEEEec
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYDA 991 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~v~d~ 991 (1128)
....+..++.++++|.+..++...++++..... .+........ ...+.+.|..+.....++ +...+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 344556677888888887777766776655433 1111111111 344566666666665553 3456667776
Q ss_pred CCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 992 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
..+..... -+|-+-++.++||||+++|+++..|..|+|-....--.+..+- -+|..+|..++.-+
T Consensus 140 ~~~~~~~~----lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----------lGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 140 DSGRCEPI----LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----------LGHKEFVSTISLTD 204 (390)
T ss_pred cccCcchh----hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----------cccHhheeeeeecc
Confidence 66433222 2348999999999999999999999999998877654444333 25666777777665
Q ss_pred CCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1072 LEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
++.|++||.|++|++||..+|..
T Consensus 205 --~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 205 --NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred --CceeeecCCCCcEEEEecccCCc
Confidence 57799999999999999999875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-06 Score=80.80 Aligned_cols=177 Identities=6% Similarity=-0.042 Sum_probs=123.9
Q ss_pred EEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC
Q 001190 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1128)
Q Consensus 360 la~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~ 439 (1128)
+..++.|.++++.+++.+..... +....-.+.++++|+|++++++.+....|..|.++...
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~-------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA-------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcccce-------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 45567899999998876543211 11111238899999999999999999999999998654
Q ss_pred cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-----EEecCCCCCeEEEeccCCCCccEEEE
Q 001190 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-----FNFEGHEAPVYSICPHHKENIQFIFS 513 (1128)
Q Consensus 440 ~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s 513 (1128)
...........++.-.+..|+.... .+|++..||++.||| ...... ..-..|.+.+..+.|++.+-..+|+.
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 4332223344555667888998887 799999999999999 433322 12245899999999987665567777
Q ss_pred EeccCcEEEEecCCCCceeeecCCC--------CeEEEEEEcCCCCeEEEee
Q 001190 514 TAIDGKIKAWLYDTMGSRVDYDAPG--------HWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 514 ~~~dg~i~~wd~~~~~~~~~~~~~~--------~~i~~~~~s~~g~~l~~~~ 557 (1128)
.-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 7777899999998876554333222 2366777777776666554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-05 Score=81.89 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=138.6
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe-cCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 411 ~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs-~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
+++|.+ +|.++++--..+.|..|+..+++... +... . ...+++. +++. ++.+..+ .+.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 568888 67777776678999999998875322 1111 1 6777887 6765 4444444 445559 666543
Q ss_pred EEecC-----CCCCeEEEeccCCCCccEEEEEecc--------CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 488 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
..... .....+.+++.+ +|.+.++.... |.|..++.+ .........-...+.++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 32221 234578888865 66666665433 446556554 33333333345678999999999887
Q ss_pred EeeeccCCCceEEEEeCCCCce----eeEeccccC--CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC
Q 001190 555 SCGTSKDGDSFLVEWNESEGTI----KRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
.+.. ..+.|..+++..... ...+..... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 477888888853221 122221111 136679999999888888889999999987 888888877633
Q ss_pred CCCcceEEEc-CCCCEEEEEE
Q 001190 629 LPNLPRLRFS-KEGNLLAVTT 648 (1128)
Q Consensus 629 ~~~v~~v~~s-p~~~~l~~~~ 648 (1128)
.+++++|. ++.+.|.+.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68899994 6766666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-06 Score=80.53 Aligned_cols=223 Identities=10% Similarity=0.002 Sum_probs=147.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAP 496 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~ 496 (1128)
...+||.|+..|...+|...+.+.... ....|...|+-+.=..|.+. -+..++.|.++++.+.++....... |...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~-h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV-HNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee-eccc
Confidence 456899999999999999987654322 23344444433322223332 4667888999999995554432222 3332
Q ss_pred --eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 497 --VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 497 --v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.++++++ +++++++.+....|..|.++....... .......-.+..|+.....++++. +|+.+.|||+
T Consensus 159 ~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~----Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF----QDGTCAIYDV 232 (344)
T ss_pred cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe----cCCcEEEEEe
Confidence 66677654 778999999999999999877554332 222333456788999888888887 6999999999
Q ss_pred CCCceee----EeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCC------CCcceEEEcC
Q 001190 572 SEGTIKR----TYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSK 639 (1128)
Q Consensus 572 ~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp 639 (1128)
+...... .-+.|+++.+..+.|++.| ..|+..-.-+.+.+.|++++...+.+...... ..|....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8755332 3345666789999999865 34555555678999999998776665433221 2355666666
Q ss_pred CCCEEEEEEc
Q 001190 640 EGNLLAVTTA 649 (1128)
Q Consensus 640 ~~~~l~~~~~ 649 (1128)
++..+.+.+.
T Consensus 313 ~n~s~~v~~e 322 (344)
T KOG4532|consen 313 ENESNDVKNE 322 (344)
T ss_pred CCcccccccc
Confidence 6655555443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00021 Score=69.66 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=88.6
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCce
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1128)
.+++.|+..+.+.--|..++...++..... .+.+-+.- -|++++.++. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 355555666666656655555554433222 23222221 4667888875 78899999999988887775543 22
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
......+++..+.+|+.|+..+..|..+...+...+..+. ...+-++.|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 2345678899999999999999999999999988776554 234455666333444444455543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.6e-07 Score=100.76 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=136.8
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666666 677889999999888777655556766666 7799999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEcC---------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC--CCEEEEEecCeEEEE
Q 001190 921 LAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIY 989 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~v~ 989 (1128)
+.. .|+.|+++|. |..|+|||+..-+.+..+.+. ....-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------cCchhhhhcccccceEEEEecccceeec
Confidence 555 6889999875 567899999987766555444 22345677775 334444568999998
Q ss_pred ecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 990 DASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 990 d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
|..+... ......+.. +..+..+.+|++|..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8432221 111222211 56699999999999999999999999998
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-06 Score=84.41 Aligned_cols=248 Identities=12% Similarity=0.132 Sum_probs=146.0
Q ss_pred eccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5888999999999999887 77889999999999999976655 35556 78999999999877 8999999999999
Q ss_pred Ee--cCCCeEEEecC--CCCCeEEEeccCC----CCccEEEEEeccCcEEEEecCCCCcee--eecCC-CCeEEEEEEcC
Q 001190 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAP-GHWCTTMLYSA 548 (1128)
Q Consensus 480 Wd--~~g~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~-~~~i~~~~~s~ 548 (1128)
+| .....+..+.+ ...+|..++..+. ..+.+|+....+ ...|++....... .+... .+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33333444433 2334554442211 122344444332 4456553322222 22222 33555666666
Q ss_pred CCCeEEEeeeccCCCceEE----EEeCCCCceeeEec-cc---cCCc---eeEEEEeCCCCEEEE-EECCCcEEEEECCC
Q 001190 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 616 (1128)
-.+.++........-..++ --|-.+|..+..-+ ++ .... -..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655543211111111 11222333222111 11 0000 111222345566655 44678899999999
Q ss_pred CeeeEEEecCCCCCCcceEEEcC-CC-CEEEEEEcCCcEEEEEcc
Q 001190 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1128)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp-~~-~~l~~~~~dg~i~iw~~~ 659 (1128)
++.++.+.... +|..+.... ++ .+|++-. |..++|+..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999987652 566665543 33 3455444 6678887643
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=89.90 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCC--------cCHHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1128)
+.-+.|+|+.||..+||.++|..|-++|.+. .++..++++|+.|+...|+.-.+.-+..-. .....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 4457899999999999999999999999975 237789999999999999888765311111 1122378999
Q ss_pred HHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHH--HHHhhcccC
Q 001190 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLI--ELKKLIEAN 154 (1128)
Q Consensus 77 ~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~ 154 (1128)
+.|.|+||+..+++.+|+.+.++.|.|....++++++....++.++.......+... ....|=..+. .++.+..-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~l--~~~~rw~~l~~lF~s~a~~l- 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLNL--LTADRWSVLADLFLSEALKL- 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccCc--ccHHHHHHHHHHhhHHHHHH-
Confidence 999999999999999999999999999988889999999999988755443332211 2233333333 23333222
Q ss_pred cccccccCCCCCCh-HHHHHHHHHHHHHH-HhhCCCCC
Q 001190 155 PLFRDKLAFPTLKS-SRLRTLINQSLNWQ-HQLCKNPR 190 (1128)
Q Consensus 155 ~~~~~~~~~~~~p~-~rL~~ll~qa~~~q-~~~~~~~~ 190 (1128)
| .+|. .+|..+|+-.+..| .-.|.++.
T Consensus 271 --------~-~i~~~~~L~~~l~~GLsalKTp~c~~~~ 299 (389)
T KOG0396|consen 271 --------F-GIPINPALTIYLQAGLSALKTPRCLNDE 299 (389)
T ss_pred --------h-CCCCCcHHHHHHHhhhhhcccccccccc
Confidence 1 1222 25888888777777 44566553
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00034 Score=68.29 Aligned_cols=116 Identities=8% Similarity=0.082 Sum_probs=81.8
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
.-+|.+.+++.||..+.+.--|..+|+.....- -...|-+-+.- -|++++.|+..|.+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345667789999999999999999998764311 12233332222 477899999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+.+.++|+.+..+..+.. --......+++. ++..|+.|++...-| .+..++.+.+-.
T Consensus 77 fl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred EEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccC
Confidence 999999977654332221 111233456788 899999999999999 888888776543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0063 Score=71.13 Aligned_cols=621 Identities=12% Similarity=0.090 Sum_probs=308.2
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEcc-CCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+..-..+++|.++ ..|..+|.+...-+. +++.......+ ...-|...-..|+..-++| .|.+|+
T Consensus 260 ~~~~~v~~~~~~y-Ll~d~~G~Lf~l~l~~~~e~~s~~~lk-------------ve~lge~siassi~~L~ng-~lFvGS 324 (1096)
T KOG1897|consen 260 VCYGRVDLQGSRY-LLGDEDGMLFKLLLSHTGETVSGLDLK-------------VEYLGETSIASSINYLDNG-VLFVGS 324 (1096)
T ss_pred EEcccccCCccEE-EEecCCCcEEEEEeecccccccceEEE-------------EEecCCcchhhhhhcccCc-eEEEec
Confidence 3444567788755 456778877655544 55543321111 1234455566677776666 666787
Q ss_pred CCCeEEEEEccCCCcc----eeceeecccccceeEEEEecC---CCeEEEEEec---CCCeEEEEe--cCCCe--EEEec
Q 001190 426 TKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG---DDKLIKVWE--LSGRK--LFNFE 491 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d---~~~~~l~s~s---~d~~i~vWd--~~g~~--~~~~~ 491 (1128)
.-|.=++-.+.+.... ....++ ..-++|.+++.... |+. -++||+ .||++++.. ..=.. ...+.
T Consensus 325 ~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~ 402 (1096)
T KOG1897|consen 325 RFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLP 402 (1096)
T ss_pred cCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecC
Confidence 7665455555443221 111112 23458888887543 222 355544 478999987 22122 23444
Q ss_pred CCCCCeEEEe--ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEc-CCCCeEEEeeeccCCCceEEE
Q 001190 492 GHEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 492 ~h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
| -..++.+. +.++.|. +|+.+-.+ .-++..+...-......+-......+..| -.|+.|+=.. ...|++
T Consensus 403 G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl 474 (1096)
T KOG1897|consen 403 G-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRL 474 (1096)
T ss_pred C-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEE
Confidence 5 23466666 5555454 55544333 23344443221111111111111122221 1333333222 345677
Q ss_pred EeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC--C----C
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE--G----N 642 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~--~----~ 642 (1128)
++-. ..+..+....+ +++...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +
T Consensus 475 ~ss~--~~~~~W~~p~~--~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 475 VSSA--GLRSEWRPPGK--ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred Ecch--hhhhcccCCCc--eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcce
Confidence 7644 23334443332 3444444555678888888888777777665 333333333457899999973 2 2
Q ss_pred EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
++++|..+..+.+.-. .||+..+....-+ .+.-+...+ -..+
T Consensus 550 ~~aVG~Ws~~~~~l~~---------------------------~pd~~~~~~~~l~--------~~~iPRSIl---~~~~ 591 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTF---------------------------LPDLILITHEQLS--------GEIIPRSIL---LTTF 591 (1096)
T ss_pred EEEEEeecceEEEEEE---------------------------CCCcceeeeeccC--------CCccchhee---eEEe
Confidence 6777776555444322 2222221100000 000000000 0011
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEe--eCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIV--DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~ 800 (1128)
..|..++.++..||.+..|.+.... .... +... -...++.=-.|+..++.-+.+.+|.-..+|..
T Consensus 592 e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~-Kk~~-----lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~------- 658 (1096)
T KOG1897|consen 592 EGDIHYLLVALGDGALLYFVLDINTGQLSDR-KKVT-----LGTQPISLRTFSSKSRTAVFALSDRPTVIYSS------- 658 (1096)
T ss_pred eccceEEEEEcCCceEEEEEEEcccceEccc-cccc-----cCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-------
Confidence 2235566777777777666554311 1111 1000 02233444455555555555555544444421
Q ss_pred CCceeeeeccceeccCCCccccccccCCCCCCCeeE-EEeccC--CCeEEEEeCCeEEEEECCCceE--EEEeeCCCCCe
Q 001190 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IALSKN--DSYVMSATGGKISLFNMMTFKV--MTTFMSPPPAS 875 (1128)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d--g~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~v 875 (1128)
++++...++. -..+.. +.|+.+ ...++++..+.+++..++.-+. ++++.- ....
T Consensus 659 ----------------n~kLv~spls----~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~p 717 (1096)
T KOG1897|consen 659 ----------------NGKLVYSPLS----LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESP 717 (1096)
T ss_pred ----------------CCcEEEeccc----hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCCh
Confidence 1111111110 011111 223322 3467777777777776654332 233321 2234
Q ss_pred eEEEEcCCCCCEEEEEeC-----------C---CcEEEEecccceeeecccc----cccCeeEEEEcCC-CCEEEEEc--
Q 001190 876 TFLAFHPQDNNIIAIGTE-----------D---STIHIYNVRVDEVKSKLKG----HQKRITGLAFSTS-LNILVSSG-- 934 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~-----------d---g~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-~~~l~s~~-- 934 (1128)
..+++.+ ...++++.+. . ..++++|-++-+.+...+- -.-.|.++.|..| +.+++.|.
T Consensus 718 rrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~ 796 (1096)
T KOG1897|consen 718 RRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL 796 (1096)
T ss_pred hheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence 5556654 3333333321 1 1366666666554432211 1124556668887 66777664
Q ss_pred --------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCC
Q 001190 935 --------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 935 --------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
..|.|.++.+..++.++........ + ...+...-...++++-+..|++|++.+.+.++.- ..|
T Consensus 797 v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~----G--av~aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~ 867 (1096)
T KOG1897|consen 797 VYPDENEPVNGRIIVFEFEELNSLELVAETVVK----G--AVYALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNI 867 (1096)
T ss_pred eccCCCCcccceEEEEEEecCCceeeeeeeeec----c--ceeehhhhCCeEEEecCcEEEEEEccccceehhh---hcc
Confidence 2477888888774433333222211 1 1223333344556666789999999988655443 334
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEe--cCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFD--ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1084 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg 1084 (1128)
..++..+...-.|..+++|.--++|.+-. ...|...-.-+ .=++-+.+++.+-. +..++-+-.+|
T Consensus 868 ~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-----------D~~p~Wmtaveil~--~d~ylgae~~g 934 (1096)
T KOG1897|consen 868 SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-----------DYNPNWMTAVEILD--DDTYLGAENSG 934 (1096)
T ss_pred cCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-----------hhCccceeeEEEec--CceEEeecccc
Confidence 78899999999999999999888877654 44444443333 12334556666543 56777778888
Q ss_pred cEEEEcCC
Q 001190 1085 SVKVMEPS 1092 (1128)
Q Consensus 1085 ~i~iWd~~ 1092 (1128)
.+.+-...
T Consensus 935 Nlf~v~~d 942 (1096)
T KOG1897|consen 935 NLFTVRKD 942 (1096)
T ss_pred cEEEEEec
Confidence 88776554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-05 Score=81.79 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=138.2
Q ss_pred CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCC
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~ 505 (1128)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+..+.. .+++.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~---~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP---V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---E
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---e
Confidence 6789999998888765431 21101112111 333455 567778899999999 79998877764 22221111 1
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeee-cCCC---CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~---~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
.++..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|..+|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 13346777778889999999999888874 3221 11122223333777777653 7899999999999988887
Q ss_pred cccCCc---------eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
...... ...-....++ .++.++.++.+..+|..+++.+.... .. .+.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 644211 1111222233 78888888864444999999765333 22 1222 14567788888889999
Q ss_pred EEEEEcccCccc
Q 001190 653 FKILANAIGLRS 664 (1128)
Q Consensus 653 i~iw~~~~~~~~ 664 (1128)
|..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999998543
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=98.09 Aligned_cols=222 Identities=14% Similarity=0.174 Sum_probs=146.3
Q ss_pred cccCCCCCcceE-Eee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVA-VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~-~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|.+.......+ ..+ +|..+|+.+-|+|..+-++|+++.|..|..||+.+..... -. ...
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys--------------~~~ 156 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS--------------TSS 156 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee--------------eec
Confidence 888766554433 334 4999999999999999899999999999999998754322 11 112
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--c
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~ 482 (1128)
-...-..|+|+-....+.+.+..+.|.+||...|..... .+++|...|+.++|..--.. .+.+++.|++|+.|| .
T Consensus 157 w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~--s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC--SLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccccCceeeecccCcchhhhccCCceEEEeccCCCcceE--EecccceeeehHHHhhhhhh-hhcccCCCCceeeecccc
Confidence 234567789987555555556777899999987765433 67889999999999764322 588999999999999 2
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEE---------ecC-CCCceeeecCCCCeEEEEEEcCCC--
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---------LYD-TMGSRVDYDAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w---------d~~-~~~~~~~~~~~~~~i~~~~~s~~g-- 550 (1128)
+-+.-........+|+--++.|-++|.++.---.+..+.++ +.. ....+..+.+|...|....|-..+
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc
Confidence 22222233334556666666666665444322222333333 322 234556778887766555443222
Q ss_pred --------CeEEEeeeccCCCceEEEEeCCC
Q 001190 551 --------SRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 551 --------~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
-.|++-+ .|..+++|.+..
T Consensus 314 ~~d~d~rdfQLVTWS----kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWS----KDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEee----cCCceEeeeccH
Confidence 2567766 488999998764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=80.76 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=125.8
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1128)
|+.+.|+-+- .|+++-.++.+......++.+... |+...... +...+..|+.+-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 7777777664 578888888887777666555431 22222212 22234456555555556666888999999
Q ss_pred CCeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEecCCCe------EEEEe-cCCCeEEEecCCCCCeE
Q 001190 427 KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL------IKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~------i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
||.+.+.+.+.- ++....+. .|.+ --+.+....+. .+.++ .=|+ .+.|+ ..-+.+..-......|.
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~-~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSG-GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecC-CcceEeeccceeeecccccccccccccccccch
Confidence 999999998762 22111111 1222 11222333444 33332 2333 33444 11111111111223489
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
+++-+|.. .+.+++|+.||.+-+||.+...... .+..|..++..+-|.| ++..|++++ ++|.+..||..+
T Consensus 184 ~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s----edGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS----EDGSLWHWDAST 255 (319)
T ss_pred hhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec----CCCcEEEEcCCC
Confidence 99988875 4788999999999999998764433 4566788999999998 567888887 589999999765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-05 Score=91.49 Aligned_cols=274 Identities=8% Similarity=0.092 Sum_probs=160.7
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
...|.++.|..++..++.+...|.|.+-|....... +.+ .-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg-~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVG-NVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eee-eccCceEEEeecCCC
Confidence 468999999999999999999999888754322110 111 145679999999999
Q ss_pred CeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-----e------eccc
Q 001190 844 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----K------SKLK 912 (1128)
Q Consensus 844 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-----~------~~l~ 912 (1128)
++++..+.+..-++...+..++....-+. .-.+ .++ .+.+++...=.-+....|+. + ....
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccc-cceecccccceeeecchhhhcccccccccccccchh
Confidence 99999985444444444444443322111 0111 122 22333222111222122210 1 1011
Q ss_pred ccccCeeEEEEcCCCCEEEEEc----CC-CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ec
Q 001190 913 GHQKRITGLAFSTSLNILVSSG----AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HE 983 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d 983 (1128)
.| +.=+.+.|--||+++|+.. .+ +.|+|||-+ |.....- ......-.+++|-|.|.++++. ++
T Consensus 194 ~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 194 QD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS------EPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred hc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc------CcccccccceeecCCCCeEeeeeecCCC
Confidence 12 3345799999999998732 23 789999987 3321111 1111344679999999999984 46
Q ss_pred CeEEEEecCCcccccccccCCC-CCCCeEEEEEeeCCCEEEE---EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFA---TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1059 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~t---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1128)
+.|.+|.-+ |-.-..+..... ...+|..++|+.++..|++ ......|++|-+.+..-..+.... ..
T Consensus 266 ~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~---------~~ 335 (1265)
T KOG1920|consen 266 SDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ---------FS 335 (1265)
T ss_pred CcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe---------cc
Confidence 779888854 322222221111 1344999999999999997 444445999999886543332210 11
Q ss_pred CccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1060 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1060 ~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
... -+.|+|..+..+..-..+|.+.+.++.
T Consensus 336 ~~~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 336 QKA---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ccc---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 111 177888767777766677777666554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.1e-06 Score=84.26 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-
Q 001190 830 LEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE- 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~- 906 (1128)
+...|+.++|||..+ ++..++ +.+|+|.|+++...+..+..+ ..+.+++|.-++..++..|..+|.|.|||++..+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 778899999999887 667777 899999999999999999887 7899999999778889999999999999998542
Q ss_pred eeecccc--cccCeeEEE------EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 907 VKSKLKG--HQKRITGLA------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 907 ~~~~l~~--h~~~V~~l~------~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
.+..+.+ ...+|..++ ..+-|.+|+....+ +..|.+............. ..++...++++.+-.+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel---e~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL---EPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc---CCCcceeeeeecCccceE
Confidence 2222222 223444433 33345566655544 6677776533221111111 111344555566644555
Q ss_pred EEEe-c-------CeEEE-EecCCcccccccccCC-C----CCCCeEEEEEeeCCCEEE-EEecCCcEEEEecCCCceEE
Q 001190 979 LVVH-E-------TQLAI-YDASKMERIRQWTPQD-A----LSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 979 ~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~----h~~~v~~l~~s~dg~~l~-t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
+++. . ..+-. -|-.+|..+....... + .-..-..+.-.+|..+|+ +|+.-+.+.+||..+++.+.
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 5431 1 01111 1111222222111100 0 000111222244566666 46677889999999999999
Q ss_pred EeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1044 YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
++.. .. .+..+.....++.-++..-+|..++|+..+.
T Consensus 426 ~l~~-----------~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 426 TLAL-----------SE--PVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred eccc-----------Cc--ceeecceeecCCcchhhheecceEEEEecCC
Confidence 8882 22 2355655555666677777888999986543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0002 Score=79.92 Aligned_cols=296 Identities=16% Similarity=0.184 Sum_probs=155.3
Q ss_pred eCCCCcEEEEe--------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 353 spdg~~lla~g--------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
||||+++|+.- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998655522 234688999999876543 11125678899999999999988
Q ss_pred eCCCeEEEEEccCCCcceeceeeccc----------------ccceeEEEEecCCCeEEEEEe-cCCCeEEEEecCCCeE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAH----------------VGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKL 487 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h----------------~~~v~~l~fs~d~~~~~l~s~-s~d~~i~vWd~~g~~~ 487 (1128)
. ++.|.+++..+++..+. +..|- -+.-..+-|||||++ |+.. -++..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 56799999887754432 22220 122356889999995 4433 2233343333 0
Q ss_pred EEecCCCC---CeEEEeccCCCCccEEEEEeccC--cEEEEecCCCCcee-ee----cCCCCeEEEEEEcCCCCeEEEee
Q 001190 488 FNFEGHEA---PVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 488 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~-~~----~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
........ .+..+.+ |.. |..+- .+.++|+.+++... .. .....-+..+.|+++++.++...
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp EEESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred eccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 00111111 2333332 211 11122 34557776665432 21 23455788999999999555444
Q ss_pred eccC-CCceEEEEeCCCCceeeEeccccCCce---eEEEEe-CCCCEEEEEE-CCC--cEEEEECCCCeeeEEEecCCCC
Q 001190 558 TSKD-GDSFLVEWNESEGTIKRTYAGFRKKSN---GVVQFD-TTQNHFLAVG-EDS--QIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 558 ~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~~s-~dg--~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
.+++ ....+.+.|..++............-+ ....+. +++..++..+ .+| .|++++..++....... +.
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~---G~ 279 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS---GD 279 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS----SS
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc---Cc
Confidence 4433 344667788887766544443333222 245554 6666655544 555 46666776666442222 22
Q ss_pred CCcc-eEEEcCCCCEEEEEEcC---C--cEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 630 PNLP-RLRFSKEGNLLAVTTAD---N--GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 630 ~~v~-~v~~sp~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
-.|. .+.++++++.|...+.. + .|...++.. ....+.+...... -..+.|+|+|++++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLTCEDGD-----HYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESSTTSST-----TEEEEE-TTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEeccCCCCC-----ceEEEECCCCCEEEEE
Confidence 2453 46788887776644432 2 344444441 1222222221111 1478999999988643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-05 Score=88.86 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=120.1
Q ss_pred EeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEecccceeeecc
Q 001190 838 ALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 838 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l 911 (1128)
=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3567887765444 4678899999988877766433 456789999 888887776322 2333322221111111
Q ss_pred cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-----CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
.- ..+ -++.++|++... .++.|.+.|..+ .+.+..++.. .....+.++|||++++++. +.
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCC
Confidence 10 000 133457876665 367899999987 3333333333 5677899999999999975 88
Q ss_pred eEEEEecCCccc------------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 985 QLAIYDASKMER------------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 985 ~i~v~d~~~~~~------------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.+.|+|+.+.+. +.+... ...-...+|.++|....+-.-|..|..|++.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999998653 222222 34445778999998777888999999999987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-05 Score=86.44 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=90.4
Q ss_pred eccCCCeEEEEeCCeEEEEECCC-----ceEEEEeeCCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEeccccee-----
Q 001190 839 LSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEV----- 907 (1128)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~----- 907 (1128)
+.+||++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457876665 467899999988 34455554 445678899999 7776655 45689999999987542
Q ss_pred -------eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC------C----cccceeEEeecCCCCCCCccEEE
Q 001190 908 -------KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT------W----EKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 908 -------~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~------~----~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
..+..--.++ ...+|.++|....|...|..|..||+.. | ..+..+.++-..+|. ...-.=.
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~-~~~~g~t 438 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN-HASMGET 438 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee-eecCCCc
Confidence 3333322222 3678999999888999999999999986 2 222333333333322 1111112
Q ss_pred EcCCCCEEEEE
Q 001190 971 FNADQVRMLVV 981 (1128)
Q Consensus 971 ~s~d~~~l~~~ 981 (1128)
-.|||+||++.
T Consensus 439 ~~~dgk~l~~~ 449 (635)
T PRK02888 439 KEADGKWLVSL 449 (635)
T ss_pred CCCCCCEEEEc
Confidence 37899999984
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.8e-07 Score=83.97 Aligned_cols=134 Identities=22% Similarity=0.227 Sum_probs=98.3
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001190 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1128)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1128)
...++++|++|+++.|++.++...+.-..... .+.|.|++|+|+||+..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999886332211112 38999999999999999999999999999997765445667888888
Q ss_pred hhcccCccc--hhhhcccCCchHHHHHHHHHHHhhcccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001190 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1128)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1128)
+|....... ...+...-+. .+|+++.+.+.+.+-..- .+| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~---------~~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSY---------GLPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHh---------CcCCCCHHHHHHHHHHHHh
Confidence 887766554 2233333333 778899999988765422 133 457888888776554
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=89.08 Aligned_cols=162 Identities=16% Similarity=0.139 Sum_probs=119.2
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeE
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 430 (1128)
+||-+-.-+-++.+.+..|-|-|+++|-... +. ..+.|.++.|.-.+.++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 5653322122333467789999999886532 22 57789999999989999999999999
Q ss_pred EEEEccCCCc---ceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCe---EEEecCCCCCeEEEec
Q 001190 431 QLYSYAGSND---LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICP 502 (1128)
Q Consensus 431 ~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~---~~~~~~h~~~v~~~~~ 502 (1128)
.+.|+..+.. -.. .---|...|+++..-. +++ +|++.+-+|.|++|| .--++ +..+.||-..-.-+-+
T Consensus 277 ~~iDLR~rnqG~~~~a--~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA--QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEeeecccCCCcce--EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 9999986511 111 1225899999998777 566 788889999999999 54444 8899999776555555
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCC
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 537 (1128)
+-++....+++++.|...|+|.++.+....++...
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55556678999999999999999887766655443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-05 Score=84.48 Aligned_cols=284 Identities=14% Similarity=0.082 Sum_probs=164.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|...|.--+++..++ +++.|+.-|.+.+|+-.+|+.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 455666677788888 789999999999999888776532 1333456677788999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceee---cccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC-----eEEEecCCC
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~-----~~~~~~~h~ 494 (1128)
.|+..|.|.|+-++.+.+-.....- ..|...|++++|++|+. .+++|...|.|..-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999999875543322111 24778999999999999 7999999999987773331 123333345
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCC----CCeEEEeeeccCCCceEEE
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~----g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.|-.+... ++.+|++... . -.+++.+.......-..... .-...+|-|. .+-.+.++ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666542 3333433332 2 22344433221111111111 1233444443 33344443 334678
Q ss_pred EeCCC-CceeeEeccc-------------cC---C-------ceeEEE----EeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 569 WNESE-GTIKRTYAGF-------------RK---K-------SNGVVQ----FDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 569 wd~~~-~~~~~~~~~~-------------~~---~-------~v~~~~----~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|.++- |..+++..-. .. . .-..+. +.-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 87652 3333332210 00 0 000011 111223455555444 889998877665
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
.-.... + .|..++ -+++-|.+-..|+.+++..+.+..+
T Consensus 320 l~se~~-~--DI~dVs--~~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 320 LWSEGG-H--DILDVS--HCGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred EeecCC-C--ceeEEe--ecCceEEEEecCCceeEEEeehhHH
Confidence 544322 1 344444 3566677777777777777766533
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-07 Score=102.88 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=147.4
Q ss_pred eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC--cEE
Q 001190 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--QLC 940 (1128)
Q Consensus 863 ~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg--~i~ 940 (1128)
+..+++..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44556777888999999999 889999999999999999999999999999999999999999999777655433 478
Q ss_pred EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc-ccCCCCCCCeEEEEEeeC
Q 001190 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW-TPQDALSAPISCAVYSCN 1018 (1128)
Q Consensus 941 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~-~~~~~h~~~v~~l~~s~d 1018 (1128)
+|++..-- ...|......++.|+.....-+.|. .....+||+.++..+..+ ....+.+..-++..|||+
T Consensus 1171 LW~~~s~~---------~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTG---------GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred Hhcccccc---------CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 99987621 1122225567888888755545554 567889999999887763 333333455588899999
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+++++ .|| .+||+...+.+.++...+ .+ ..=.|+|+ +..++.-+ -|||+-+-..
T Consensus 1242 D~LIl---ndG--vLWDvR~~~aIh~FD~ft------------~~-~~G~FHP~-g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPEAIHRFDQFT------------DY-GGGGFHPS-GNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred cceEe---eCc--eeeeeccHHHHhhhhhhe------------ec-ccccccCC-CceEEeec-----hhhhhHHHHH
Confidence 99887 455 689999988888877432 11 12347884 66666654 4677666443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.3e-07 Score=62.52 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.0
Q ss_pred ceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=86.84 Aligned_cols=277 Identities=13% Similarity=0.165 Sum_probs=159.7
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
+.|.++.|.-++.. +..+..+|.|.+-|..+..... ...-.++|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999884 5667789999999887765432 34457799999999999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecc---cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe-EEEecCCCCCeEE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFNFEGHEAPVYS 499 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~-~~~~~~h~~~v~~ 499 (1128)
+..+++.+-+- +-.++... .+.. ..+..-.+-|-....+ +-|+ .|...--+ ..... +....-+ +.=++
T Consensus 128 T~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTS 200 (1265)
T ss_pred eCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCce
Confidence 88887765432 21222110 0100 0111222333222211 1111 01111111 00000 0000011 12244
Q ss_pred EeccCCCCccEEEEE-----eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-
Q 001190 500 ICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~-----~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~- 573 (1128)
++| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++.-+.
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCc
Confidence 666 5588888883 223799999865 3333333333445568999999999998775443 55788887543
Q ss_pred --CceeeEeccccCCceeEEEEeCCCCEEEE---EECCCcEEEEECCCCeeeEE--EecCCCCCCcceEEEcCC-CCEEE
Q 001190 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKE-GNLLA 645 (1128)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~~l~ 645 (1128)
|.....++.... .+..++|+.++..|++ ......|++|...+...... +..... .-+.|+|. ...+.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222333332 3788999999998888 44555699999988764332 332222 23889984 33444
Q ss_pred EEEcCCcEEEEEc
Q 001190 646 VTTADNGFKILAN 658 (1128)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (1128)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446777666654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00019 Score=75.20 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=133.9
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc-cceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 909 (1128)
...+++|.||+++.+.. ...|.|-|+...+.+.++.... +..+ -|..++-+.+-|.||.+.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE--EecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 44578999999998886 4679999999999998886432 2222 23234557788889999998887 455432
Q ss_pred c----ccccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEE
Q 001190 910 K----LKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 910 ~----l~~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 978 (1128)
+ |..-.+++ ..-+++.++..++..+.+|.|+--|+............... +-.+..-..+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 22222222 23344555556666788898988888776543333332211 1111445568888766655
Q ss_pred EEE-e---c-------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEE-ecCCcEEEEecCCCceEEEe
Q 001190 979 LVV-H---E-------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFAT-FCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~-~---d-------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~-~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
.+- + + ..|.+||+.+++.+..+.. ..++.+|+.|.|.+ +|++. ..++.+.|||..+|+.+..+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 552 1 1 2488899999999999887 45788999999988 55544 45899999999999999998
Q ss_pred CC
Q 001190 1046 AP 1047 (1128)
Q Consensus 1046 ~~ 1047 (1128)
..
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 83
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=86.85 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=121.7
Q ss_pred EEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC----Cce
Q 001190 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSR 531 (1128)
Q Consensus 456 ~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~----~~~ 531 (1128)
.++|+-+-..+. ++.+.+..|-+-|..+...+.|. ..+.|.++.|+.. +.+++.|+..|.|...|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcc
Confidence 346665433324 55666778888884443444554 5667888888653 469999999999999999876 333
Q ss_pred eeecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCcee-EEEEeCCCCEEEEEECC
Q 001190 532 VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNG-VVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~l~~~s~d 606 (1128)
.....|+..|+++..-. ++++|++... ++.|.+||.+.-++ ++.+.||-+.... -+-+.+.+..++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 44556788899988777 7777777764 89999999998777 8999999763322 23456777889999999
Q ss_pred CcEEEEECCCCeeeEEEecCC
Q 001190 607 SQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (1128)
...+||.+..|.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999998886543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=90.67 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=136.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 951 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~ 951 (1128)
...++|.+++ +++++.|+.+|.|++++.... . .+...|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3457778885 579999999999999987643 2 444446554 5689999999999999999999987766
Q ss_pred eeEEeecCCCCCCCccEEEEcCC-----CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 952 SVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 952 ~~~~~~~~~~~~~~v~~v~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
....+ .++.+|+++|| .+.+++|+...+.++.-.=.........+.. .++|.++.|. |.++|=++
T Consensus 108 ~~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~-eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEG-EGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecC-ccceEEEEec--CcEEEEec
Confidence 66665 78899999998 5567777654477776442222222222222 7899999994 77888887
Q ss_pred cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1027 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1027 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+| |+|||..+++.+..+.++.... ....++-.+.|.+. ..|+.| ..-+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC------CcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence 666 8999999999999988665332 22345567888873 555554 34467777777
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-05 Score=87.03 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=131.0
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-eeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccc-
Q 001190 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRK- 951 (1128)
Q Consensus 879 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~- 951 (1128)
+|++ ++..+|.|+.+|.|.+.+ ..-+.+..++++... |..+....+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999988886 334555788888777 555555555579999888754 8999997643222
Q ss_pred eeEE-----ee-cCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC--CcccccccccCCCCCCCeEEEEEeeCCCEE
Q 001190 952 SVTI-----HI-PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS--KMERIRQWTPQDALSAPISCAVYSCNSQLV 1022 (1128)
Q Consensus 952 ~~~~-----~~-~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1022 (1128)
.... .. ..+..+.+++.++.+.+-+.+++|- +|.|..+.-. ..+-.+....+.+ ..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-KEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-CCCceeeEEecCCcee
Confidence 1111 11 2222347889999999988888884 8888888533 2222222222222 8899999999999974
Q ss_pred EEEecCCcEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1023 FATFCDGNIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+-+.+-..|.+|.+. |+. ...+. .+.+...|.+|++..+. |++|+ +.-+.+++.+.-+
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~ld------------~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVLD------------NNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeeec------------cCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence 444456789999998 443 23344 45566778888875333 44433 2467777776543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-06 Score=80.28 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=117.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecccceee------------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001190 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK------------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iw 942 (1128)
++.+.++ +...|+++..++.+......++.+. +.+..|+++-.+-+.+--+..+++++.||.+.+.
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 4444444 2345555555555544443333222 2333455444444445556789999999999999
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE------ecCeEEEEecCCcccccccccCCCCCCCeEEEEEe
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 1016 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s 1016 (1128)
+.+.-.... -++...+ ..-.+.++...+..+.++ .-+..++|++...+....-.. . ...|.+++-.
T Consensus 117 s~~~~~~~~---~~i~~~~--~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~-~~~v~~l~~h 188 (319)
T KOG4714|consen 117 STDKDLALM---SRIPSIH--SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A-LDAVTALCSH 188 (319)
T ss_pred echHHHhhh---hhccccc--ccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c-cccchhhhCC
Confidence 987622111 1111111 112223333445555543 245566676654332221111 1 3448888888
Q ss_pred eCCC-EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1017 CNSQ-LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1017 ~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|..+ .+++|+.||.+-+||++......... ..|...+.-+-|+|+++..|++++.||.+.-||-++
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-----------~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-----------KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH-----------HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8655 55678899999999998874322222 255566678999999999999999999999999884
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00068 Score=71.11 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=147.4
Q ss_pred eeEEEeccCCCeEEEEe----C-------CeEEEEECCCceEEEEeeCCCC-------CeeEEEEcCCCCCEEEEEe--C
Q 001190 834 VPCIALSKNDSYVMSAT----G-------GKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT--E 893 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~----d-------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~lasg~--~ 893 (1128)
.-.+.+||||+.+++++ . ..|.+||..+.....++.-... ....++++. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 44578899999988753 1 2399999999988887654332 234567777 777776543 3
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CCcccceeEEeecCCCCCCCccEEEEc
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
-..|.|-|+..++.+.++.- ..+..+--+.+ +-+.+.+.||.+.-..++ .|+.. ......+.......+..-+++
T Consensus 117 a~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDT--PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEG--TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEE
T ss_pred CCeEEEEECCCCceeeeecC--CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceE
Confidence 45788889888888776652 22223322332 457788889999999998 45544 333334433332333344555
Q ss_pred CC-CCEEEEEecCeEEEEecCCcccc--cccccCC-------CCCCCeEEEEEeeCCCEEEEEec---CC-------cEE
Q 001190 973 AD-QVRMLVVHETQLAIYDASKMERI--RQWTPQD-------ALSAPISCAVYSCNSQLVFATFC---DG-------NIG 1032 (1128)
Q Consensus 973 ~d-~~~l~~~~d~~i~v~d~~~~~~~--~~~~~~~-------~h~~~v~~l~~s~dg~~l~t~~~---dg-------~i~ 1032 (1128)
.. +.++.++-+|.|+-.|+...... ..+.... --.+...-+++.+....|++... ++ .|-
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 44 45666666888887777654321 1111100 00234456777776655554332 22 388
Q ss_pred EEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE-ECCCcEEEEcCCCCCC
Q 001190 1033 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1033 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~-~~dg~i~iWd~~~~~~ 1096 (1128)
++|+.+++.+.++.. .+. +.+|+.+.++..+|.+. ..++.+.+||..+|+.
T Consensus 273 v~D~~t~krv~Ri~l-----------~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL-----------EHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEETTTTEEEEEEEE-----------EEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEECCCCeEEEEEeC-----------CCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 889999999999982 222 34677778766677665 4589999999999864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.4e-06 Score=85.58 Aligned_cols=213 Identities=13% Similarity=0.074 Sum_probs=151.1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc--c-eeeecccccccCeeEEEEcCCCCEEEEEcC-CCcEEEEECCC
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--D-EVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDT 946 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~ 946 (1128)
|...|+.+..+ ..+++.+++.||.++.|.-.. | +.+..+..|.+.|.+++.+.||..+.|++. |..++++|+.+
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777777766 467999999999999997543 2 456778889999999999999999999887 99999999988
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCC-CC-EEEEE--ecCeEEEEecCCccc-ccccccCCCCCCCeEEEEEeeCCCE
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV-RMLVV--HETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQL 1021 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~-~l~~~--~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~ 1021 (1128)
-.....+.+...++ ...+..++. -. .++++ .++.+.|+|-..+.+ ...+.. -|..+|.++.+.+-+.-
T Consensus 86 ~DminmiKL~~lPg-----~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-----FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-----ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEeeccccc
Confidence 55443333332211 112222332 22 34443 478999999775553 333332 35899999999999999
Q ss_pred EEEEecCCcEEEEecCC------CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1022 VFATFCDGNIGVFDADT------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1022 l~t~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+++....|-|.-|..+. .++...+.....+..- ......+.++.|+| ++..+.+-+.|..|+++++.+|.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f---~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF---PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc---cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999883 2222222211211111 13345678999999 69999999999999999999886
Q ss_pred C
Q 001190 1096 G 1096 (1128)
Q Consensus 1096 ~ 1096 (1128)
.
T Consensus 235 l 235 (558)
T KOG0882|consen 235 L 235 (558)
T ss_pred h
Confidence 3
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00032 Score=78.19 Aligned_cols=301 Identities=15% Similarity=0.166 Sum_probs=148.8
Q ss_pred eCCCCEEEEEE---------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 594 DTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 594 ~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
|||+++++... ..+.+.+||+++++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46777766632 356799999999876655443 23578999999999999887 578999987766222
Q ss_pred cccccCCcc--c---------cccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 665 LRAVENPPF--E---------ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 665 ~~~~~~~~~--~---------~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
.-+..+... . ...+.-..+-+||||+.|+ ...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-------------------------------------~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-------------------------------------FLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-------------------------------------EEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEE-------------------------------------EEE
Confidence 212212000 0 0011123445555555553 222
Q ss_pred -CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccce
Q 001190 734 -VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1128)
Q Consensus 734 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (1128)
.+..++.+.+........ ....+..+.+-.-| ..+..+.+| +
T Consensus 120 ~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G------~~np~v~l~--------------------v 162 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAG------DPNPRVSLF--------------------V 162 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTT------S---EEEEE--------------------E
T ss_pred ECCcCCceEEeeccCCccc-----------cCCcccccccCCCC------CcCCceEEE--------------------E
Confidence 224444444433222111 00012222221111 112222222 3
Q ss_pred eccCCCcccccccc--CCCCCCCeeEEEeccCCCeEEEE-e--C-C--eEEEEECCCceEEEEeeC-CCC---CeeEEEE
Q 001190 813 WLPSSGLLMANDVA--GVNLEEAVPCIALSKNDSYVMSA-T--G-G--KISLFNMMTFKVMTTFMS-PPP---ASTFLAF 880 (1128)
Q Consensus 813 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~dg~~la~~-~--d-g--~i~vwd~~~~~~~~~~~~-~~~---~v~~l~~ 880 (1128)
+++.+++....... .......+..+.|++|++.|+.. . + + .+.++|..++.....+.. ... .-....|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 34444433211111 00145568899999999944433 2 2 2 277778877765433332 112 2335665
Q ss_pred c-CCCCCEEEEEeCCCcEEEE--ecccceeeecccccccCeeE-EEEcCCCCEEE-EEcCC--CcEEEE--ECC-CCccc
Q 001190 881 H-PQDNNIIAIGTEDSTIHIY--NVRVDEVKSKLKGHQKRITG-LAFSTSLNILV-SSGAD--AQLCVW--SID-TWEKR 950 (1128)
Q Consensus 881 s-~~d~~~lasg~~dg~v~iw--d~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~~~D--g~i~iw--d~~-~~~~~ 950 (1128)
. ++++.+|.....||.-+|| +...+. ...+....-.|.. +.++++++.|. ++..+ +.-.|| +++ .++.
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~- 320 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP- 320 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-
Confidence 5 6466777777788865554 555554 3355544556744 67788877554 44442 234444 455 3221
Q ss_pred ceeEEeecCCCCCCCc-cEEEEcCCCCEEEEE
Q 001190 951 KSVTIHIPAGKTPTGD-TRVQFNADQVRMLVV 981 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v-~~v~~s~d~~~l~~~ 981 (1128)
.++. .. ... ..+.|||+|++++..
T Consensus 321 --~~LT---~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 321 --KCLT---CE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp --EESS---TT--SSTTEEEEE-TTSSEEEEE
T ss_pred --Eecc---CC--CCCceEEEECCCCCEEEEE
Confidence 1111 11 223 589999999998863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00021 Score=81.45 Aligned_cols=204 Identities=13% Similarity=0.161 Sum_probs=132.6
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcc-eEEEEEccCCCEEEEEeCCC
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~~~d~ 428 (1128)
+|++.+. .+|.|+.+|.|.+.+- +-.. .. +..+... |..+-.-.+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~--s~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNS--SFQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecc--cceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecC
Confidence 3567766 7899999998877763 2222 11 3445555 33333333346788777664
Q ss_pred -----eEEEEEccCC------Ccceeceee----cccccceeEEEEecCCCeEEEEEecCCCeEEEEe--c---CCCeEE
Q 001190 429 -----LIQLYSYAGS------NDLRQHSQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L---SGRKLF 488 (1128)
Q Consensus 429 -----~i~vwd~~~~------~~~~~~~~~----~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~---~g~~~~ 488 (1128)
.++||+++.- .++.....+ .....++.+++.+.+-+ .+|.|-.+|.|..+. . .|....
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhcccccee
Confidence 4999998743 222111111 12356789999999977 899999999999886 1 222222
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.....++|+.+++.. ++..++-+..-..|.+|.+..... ...+..++....|.++++....+++++ ...+.
T Consensus 166 ~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~ 238 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLY 238 (933)
T ss_pred eeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEE
Confidence 2233467899999865 444433334456789999885552 334777888999999988777566664 66799
Q ss_pred EEeCCCCceeeEec-cccC
Q 001190 568 EWNESEGTIKRTYA-GFRK 585 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~-~~~~ 585 (1128)
+|+....+....|. ++..
T Consensus 239 fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEcCCCcceeeeecCCCeE
Confidence 99998777777777 5543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-06 Score=57.87 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.8
Q ss_pred ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 862 ~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
++++.++.+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0019 Score=75.36 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=95.4
Q ss_pred EEEEcCCCCCEEEEEeCCC------------------cEEEEecccceeeecccccccCe------eEEEEc----CCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDS------------------TIHIYNVRVDEVKSKLKGHQKRI------TGLAFS----TSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~h~~~V------~~l~~s----~d~~ 928 (1128)
..++.+ .+..++.++.++ .|.-+|..+|+.+-.++.-.... ....+. -+|.
T Consensus 221 ~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 221 SPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 345555 455666776565 79999999998886654211111 011111 2343
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE------------------EecCeEE
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV------------------VHETQLA 987 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~------------------~~d~~i~ 987 (1128)
.++.++.+|.+...|..+|+.+-...... ..++.+| +..++. ..++.+.
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEE
Confidence 57778899999999999999776554431 1122233 111111 1246788
Q ss_pred EEecCCcccccccccCCCC-----CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 988 IYDASKMERIRQWTPQDAL-----SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-.|..+|+.+-........ ..+...-...-.+.+|++++.||.|+.+|.++|+.+.+..
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 8888888776555432100 0111111112356789999999999999999999999877
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00018 Score=80.40 Aligned_cols=280 Identities=17% Similarity=0.118 Sum_probs=158.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...|.=-+++..+++++.|++-|.+++|+-. .++.......+ ....+..+.+|++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~----------------------~~~~~~~~~~~--~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH----------------------TGEMRKLKNEG--ATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC----------------------chhhhcccccC--ccceEEEEEecch
Confidence 44556666778889999999999999998643 22222222222 3455667788899
Q ss_pred CCeEEEEe-CCeEEEEECCCceEE-----EEe-eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce----eeecc
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVM-----TTF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----VKSKL 911 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~-----~~~-~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l 911 (1128)
..++|.|+ .|.|.++-+...... ... ..|...|+|++|++ ++..+.+|...|+|..-.+++.. ..+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 88888888 688999887653321 111 23778899999999 99999999999999998888721 11122
Q ss_pred cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc--cceeEEeecCCCCCCCccEEEEcCC----CCEEEEEecCe
Q 001190 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK--RKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQ 985 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~ 985 (1128)
..-.+.|..+... ++.+|++.... ..+.+.+.+.. +...+.. ...-...+|-|. ..-.+.+..-.
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~------~~~~~GACF~~g~~~~q~~~IycaRPG 237 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQIGKKPRK------SLIDFGACFFPGQCKAQKPQIYCARPG 237 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhh--hheeecchhHHHHhcCCCcC------CccccceEEeeccccCCCceEEEecCC
Confidence 2233566666665 34455544433 23444443221 1111110 011233444443 33444455555
Q ss_pred EEEEecC-CcccccccccCCC--------------------------CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 986 LAIYDAS-KMERIRQWTPQDA--------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 986 i~v~d~~-~~~~~~~~~~~~~--------------------------h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.++|.++ .|..+++....++ +.-....+.+-.++ .+++-++-| |+|+|+.+
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~ 315 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN 315 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence 6777765 2333322111110 00111122222233 344443334 99999998
Q ss_pred CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1039 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
..++..... .+. +..++- +++.|+.-..|+.+++..+.+.
T Consensus 316 ~~v~l~se~-----------~~D--I~dVs~---~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 316 SQVYLWSEG-----------GHD--ILDVSH---CGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred ceEEEeecC-----------CCc--eeEEee---cCceEEEEecCCceeEEEeehh
Confidence 887776641 232 344443 4566777777787777766654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0007 Score=78.92 Aligned_cols=243 Identities=12% Similarity=0.115 Sum_probs=141.7
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeCCCCC-----e-eEEEEcCCCCCEEEEEe---------CCCcEEEEeccccee
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGT---------EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----v-~~l~~s~~d~~~lasg~---------~dg~v~iwd~~~~~~ 907 (1128)
..++.++ ++.|..+|.++|+.+..+...... + ....+. ++ +++.++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999998887643321 1 222332 33 444453 367899999999988
Q ss_pred eeccccccc--------------------Ce-eEEEEcCCCCEEEEEcCCC------------------cEEEEECCCCc
Q 001190 908 KSKLKGHQK--------------------RI-TGLAFSTSLNILVSSGADA------------------QLCVWSIDTWE 948 (1128)
Q Consensus 908 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~~~Dg------------------~i~iwd~~~~~ 948 (1128)
+-.+..... .| ...++.+.+..++.++.|+ .|.-.|.++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 01 1234455566777776665 69999999998
Q ss_pred ccceeEEeecCCC--CCCCccEEE-E-cCCCC---EEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC
Q 001190 949 KRKSVTIHIPAGK--TPTGDTRVQ-F-NADQV---RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 949 ~~~~~~~~~~~~~--~~~~v~~v~-~-s~d~~---~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
..-.......... .......+. . .-+|. .++++ .+|.+...|..+|+.+-..... ...++.+| .
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--c
Confidence 7765543211100 000000111 0 12333 34444 4889999999999987665421 11223333 2
Q ss_pred EEEEE------------------ecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1021 LVFAT------------------FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1021 ~l~t~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
.++.+ ..+|.+.-.|+.+|+.+.+...........++......+..+ .+++++.++.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~ 414 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAA 414 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECC
Confidence 33332 246789999999999888776321000000000000111112 4578999999
Q ss_pred CCcEEEEcCCCCCCCcccCC
Q 001190 1083 DGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1083 dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
||.|+.+|..+|+..|....
T Consensus 415 dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 415 DGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCeEEEEECCCCceeeEEEC
Confidence 99999999999999999754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00024 Score=80.40 Aligned_cols=178 Identities=12% Similarity=0.130 Sum_probs=123.2
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeE
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 854 (1128)
++.++.|..+|.+++.+.+... ...+. |... ..+|.++++++ ||+|
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~~---~s~~------~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNFD---HSSS------ILEGEYVASCSDDGKV 95 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------ccccc---cccc------ccCCceEEEecCCCcE
Confidence 5668888889999998754310 00000 1111 56899999999 8999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEcCC----CCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCC
Q 001190 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 855 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
.|..+-+.+...++. -..++.+++++|+ ..+.+++|+.-| +.++.-.-- +.-..+..-.++|.++.|. |.
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~ 171 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN 171 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc
Confidence 999988887776665 3567899999992 256788899888 777754311 1111344456889999995 77
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
++|=++.+| |+|||+.+++.+..++..............+.|.++.+ |++|-..+|+|..++
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 899888777 99999999887665554433333334556778877765 555656678888887
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.5e-06 Score=51.14 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001190 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1128)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1128)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=63.42 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=50.7
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
+|.+||+.|+.++ +.++...+++.|+.+++..+.-.+... ......++++++.++.......|+-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s-~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFAS-DFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEe-ccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 5789999988866 356788999999999998877665433 23346677888888877777789999999988766665
Q ss_pred cCCC
Q 001190 625 AEGG 628 (1128)
Q Consensus 625 ~~~~ 628 (1128)
.+..
T Consensus 120 ~p~~ 123 (386)
T PF14583_consen 120 VPDD 123 (386)
T ss_dssp --TT
T ss_pred CCcc
Confidence 5443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00062 Score=76.52 Aligned_cols=218 Identities=15% Similarity=0.196 Sum_probs=117.1
Q ss_pred CCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
......+.++|+|++++++++|.-.+|.....+.... +.-..++|.+ .++ +|+-..+++|.|+.--+.+..+.
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3447889999999999999999999998655555432 2345688887 665 55666688999974333333333
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
+... ..+..+-. |.+|...+.+ .|.+||+.+++.+..+.. ..+..|.|+++|.+++...+..+.|++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 3322 12333333 7877776654 899999999876555433 347899999999999999988999988
Q ss_pred cCCcc-----------cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCce--EEEeCCCCCCCCcccC
Q 001190 991 ASKME-----------RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL--RCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 991 ~~~~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1057 (1128)
..... .+..+... ...|.+.+|..| -+++|.. . +++- +-.|+. +..+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS-N-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T-T-EEEE--EETTEEEEEEE-S-----------
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCcceEEEcC-----------
Confidence 65440 11111110 456667777655 3333332 2 5555 333332 22222
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+.++ +.+.| ..+.+.....|+.|..+.+.
T Consensus 233 --~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 --KPLYL--LGYLP-KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --S--EE--EEEET-TTTEEEEE-TT--EEEEE--
T ss_pred --CceEE--EEEEc-cCCEEEEEECCCCEEEEEEC
Confidence 33444 44455 35788888888888877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0076 Score=69.33 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred EEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+....+||||++++++-+..| .|+|+|+.+|+.+.. . +.. ..-..++|.+||+.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEEE
Confidence 447889999996655544444 699999999976542 0 111 1122399999999887
Q ss_pred EEeCCC-----------eEEEEEccCCCcceeceeecccccc--eeEEEEecCCCeEEEEEecCC--CeEEEEe-cCC--
Q 001190 423 VAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSG-- 484 (1128)
Q Consensus 423 s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~fs~d~~~~~l~s~s~d--~~i~vWd-~~g-- 484 (1128)
....+. .|..|.+.++..-.. ..+...... ...+..++|++.+++.+.+.. ..+.+-| ..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765332 377777766543211 124443333 568889999997444344333 3477777 432
Q ss_pred --CeEEEecCCCCCe-EEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc---eeeecCCCC--eEEEEEEcCCCCeE
Q 001190 485 --RKLFNFEGHEAPV-YSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSRL 553 (1128)
Q Consensus 485 --~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~~~--~i~~~~~s~~g~~l 553 (1128)
.....+......+ ..+... ++.+++... ..+.|...++..... ...+..+.. .+..+. ..+++|
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~L 339 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYL 339 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEE
Confidence 2334443333333 333322 223333332 235666667776653 224444444 344444 455566
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEE--EE--CCCcEEEEECCCCeeeE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~ 621 (1128)
+.... .++...|++++...+...........+.+..+...++++.+.. .| .-++++.||+.+++...
T Consensus 340 vl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 340 VLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 65543 3467789999998555555555544445555555555554443 22 34678889998887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0021 Score=72.39 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=120.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.........+.++|+|++++++ .||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44556678999999999999995 567777777322 221 2345567789999665 56666688999976
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.++.....+... ..+..+.. |.+|...+ ++.|.+||+++.+....+... +|..+.|+++|++++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443333321 23444431 45565554 448999999988777777644 489999999999999886
Q ss_pred CCCceEEEEeCCCC---------c--eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 561 DGDSFLVEWNESEG---------T--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~---------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
+..+.+++.... - ....+... ...|.+.+|..+ .++..+.. .|+. +-+|+.-......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 556777765433 0 11111111 225777777655 44444444 6655 3344432222211
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.++.-+.+.+..+.+.....++.+..+.++..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 25677778887788888888989888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0033 Score=69.75 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=80.4
Q ss_pred CccEEEEcCC-CCEEEEE-----ecCe----EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 965 GDTRVQFNAD-QVRMLVV-----HETQ----LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 965 ~v~~v~~s~d-~~~l~~~-----~d~~----i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
....+.||-. ...+.+. .+|. ..+|+....+.-+.-...-.....|.+.+++|+.+.|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 3466777763 3334432 1332 4577776544322111111227899999999999999999999999999
Q ss_pred ecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1035 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1035 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
|..++.....- ....++.++||| ++.++++|+.-|.+.+||+.-+
T Consensus 287 D~~~~~t~~~k--------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAK--------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeee--------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 99887544331 224568899999 6999999999999999997744
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-06 Score=62.95 Aligned_cols=52 Identities=38% Similarity=0.552 Sum_probs=42.8
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHhhccCCH
Q 001190 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1128)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~ 90 (1128)
+..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999987554333323 39999999999999998764
|
Alpha-helical motif of unknown function. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0003 Score=80.51 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=136.4
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
.++-|+....+...| .+++..+...-..+.|.-++. +++++.+|...|+|.+-|..+.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 577777778888889 666666555544545776653 568999999999999999999999999999999887654
Q ss_pred EcCCCCeEEEeeeccC-----CCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-CCEEEEEECCCcEEEEECCC-Ce
Q 001190 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-VN 618 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~-~~ 618 (1128)
-.|+.|++||.+.. -|..|.|||++..+.+.-+.-+.+. ..+.|.|. ..++++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 57889999886542 3667899999988877666555442 34667775 35788889999999998332 11
Q ss_pred e-eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 619 ~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+ ......+...+.+..+.+++++..++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1 12222222233588999999999999999999999997
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0045 Score=68.76 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=133.0
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceec------c------------cccccccccccCc------ccccee
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSL------PFQASI 401 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~~------~~~~~~ 401 (1128)
.|+++.|+++.. =||+|...|.|.||.+...+.-. . .+-++.|+...-. -.+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999977 46889999999999987654331 0 0122223322111 113334
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecc------cccceeEEEEec-----CC-CeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~fs~-----d~-~~~~l~ 469 (1128)
+....++|++++.| |=-++|.|..+|.+.|.|+.....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 5559999999999999999776554431 2222 344688898872 32 225788
Q ss_pred EecCCCeEEEEe-c--C-CCeE----EEecCCCCCeEEEeccCCCC-------------------ccEEEEEeccCcEEE
Q 001190 470 TCGDDKLIKVWE-L--S-GRKL----FNFEGHEAPVYSICPHHKEN-------------------IQFIFSTAIDGKIKA 522 (1128)
Q Consensus 470 s~s~d~~i~vWd-~--~-g~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~~ 522 (1128)
.|...|.+.+|. . . |.-. .....+.++|..+......+ -.-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999997 3 2 2222 11224666766665321111 012444555788999
Q ss_pred EecCCCCceeeecCCCCeEEEEEEc-----CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC---CceeEEEEe
Q 001190 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1128)
+...+.+..............+++- ..+..|++.. .+|.++++.+...+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655554332334444553 2444555554 589999999999888877765432 123335566
Q ss_pred CCCCEEEEEE
Q 001190 595 TTQNHFLAVG 604 (1128)
Q Consensus 595 ~~~~~l~~~s 604 (1128)
++|+.++..+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00093 Score=73.94 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=86.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEe----eccC----eEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVG----SSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~g----s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
.++......+....++.||-...+.+.|- +.+| .-.+|++..++... + ..+--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr---v-------------svtsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR---V-------------SVTSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE---E-------------EEEEEecC
Confidence 34444445555667888886444333332 2233 23467765544321 1 11122467
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFD 327 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEE
Confidence 79999999999999999999999999999876322 224455688999999999 899999999999999
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.5e-05 Score=52.60 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001190 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1128)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~ 35 (1128)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0021 Score=72.07 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe--cc--CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--ID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~d--g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
.+.+=|.+|.....+..-...+..-+|++. ++.++-.+ .. ..+.+++++++....... ..+.-....|+|||+
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 455555446666666655556666677664 34433321 22 358888998877766555 233345678999999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeeeEEEecCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
.|+.+.. +++...|++.|+.+++..+ +....+ .-..-.|+|||++++..+. .| .|++.+.+.+....... ...
T Consensus 251 ~l~f~~~-rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~ 326 (425)
T COG0823 251 KLAFSSS-RDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGG 326 (425)
T ss_pred EEEEEEC-CCCCccEEEEcCCCCccee-cccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCC
Confidence 9998774 5577889999998887444 333222 2335679999999998763 33 46777777766533332 222
Q ss_pred CCCcceEEEcCCCCEEEEEEcC-Cc--EEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 629 LPNLPRLRFSKEGNLLAVTTAD-NG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~d-g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
. -..-.|+|||++++..+.. |. |.+.++.++.. .+.+... .....-.+.++|+.+.
T Consensus 327 ~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~------~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 327 G--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTST------YLNESPSWAPNGRMIM 385 (425)
T ss_pred C--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcccc------ccCCCCCcCCCCceEE
Confidence 1 1277899999999988753 44 55555555432 2222221 1123345666666664
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=86.86 Aligned_cols=252 Identities=12% Similarity=0.133 Sum_probs=153.8
Q ss_pred CCCeeEEEeccCCC--eEEEEe-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEe----CCCcEEEEe
Q 001190 831 EEAVPCIALSKNDS--YVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT----EDSTIHIYN 901 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~--~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~----~dg~v~iwd 901 (1128)
...+.|++...+.+ .+++|. +|.|.+-....... .....++....++++|.+-|...||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44567777665443 566665 78888877653322 2334457778999999997788888875 466899999
Q ss_pred cccc--ee--eecccc-cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC-CC
Q 001190 902 VRVD--EV--KSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQ 975 (1128)
Q Consensus 902 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~ 975 (1128)
+.++ .+ ...|.+ -.....+++|-.+.+++.+|...+.+.++|+.-..... ..+. ...+..+..+| .+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svn------Tk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVN------TKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhh------hhhcccceecCCCC
Confidence 9876 11 122222 33456688898888999999999999999987321110 0011 03567788899 78
Q ss_pred CEEEEEecCeEEEEe-cCCcccccccccCC--CCCCCeEEEEEeeCCC-EEEE-EecCCcEEEEecCC------CceEEE
Q 001190 976 VRMLVVHETQLAIYD-ASKMERIRQWTPQD--ALSAPISCAVYSCNSQ-LVFA-TFCDGNIGVFDADT------LRLRCY 1044 (1128)
Q Consensus 976 ~~l~~~~d~~i~v~d-~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~-~l~t-~~~dg~i~vwd~~~------~~~~~~ 1044 (1128)
.+++...|+.|.+|| ..+-+.......+. .....+..++|+|-.. .+++ .-..++|+.+|+.. ++....
T Consensus 209 nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~ 288 (783)
T KOG1008|consen 209 NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVF 288 (783)
T ss_pred CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccce
Confidence 899988899999999 33333222211111 1134589999999533 3444 44567899999753 111111
Q ss_pred eCCCCCCCCcccCC-CCccceEEEEEecCC-CCEEEEEECCCcEEEEcCC
Q 001190 1045 IAPSTYLSPSVLNG-SQTVYPLVVAAHPLE-PNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~-~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+...... .+.+ +...+|....||+.+ -+....+-..-++.-+++.
T Consensus 289 ~~~~s~~---~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 289 VNYESKY---PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred eeecccc---cccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1111100 1222 224577888888865 2344455555555555544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.01 Score=67.04 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred EEeccCCCeEEEEeCC------------eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc
Q 001190 837 IALSKNDSYVMSATGG------------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 904 (1128)
++.+|.|..+|...|. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4566777777666544 58999874 566666554448999999987 54 455677899999999863
Q ss_pred ce------eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc-cccee---EEeecCCCCCCCccE-EEEcC
Q 001190 905 DE------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSV---TIHIPAGKTPTGDTR-VQFNA 973 (1128)
Q Consensus 905 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~v~~-v~~s~ 973 (1128)
.. .+....-....+....+..+|-.+++ .++.+.+-+-.... ..... +......+....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 22 11111112222333344445533333 33433333221111 10100 000000000011111 23444
Q ss_pred CCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 974 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 974 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
+....+. ..++.+.+.+....+. +.. .+++..+++||+|++||.-..+|.+.|....-.+..+.+.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 5444333 3455666444433212 111 4789999999999999998899999999877666666666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=73.88 Aligned_cols=204 Identities=15% Similarity=0.101 Sum_probs=120.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc---CeEEEEEccCCceecccccccccccccCccccceecc
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1128)
+|-.+..-........-...+..-+|+|+++.+....-.. ..+.++++++++.....
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-------------------- 234 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-------------------- 234 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------
Confidence 4444433223333333566788899999999655443222 35999999988764321
Q ss_pred CCCcceEEEEEccCCCEEEEEe-CCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~-~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.-.+.-..-+|||||++||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++++.+..|.-.||
T Consensus 235 ~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 235 NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 1233444568999999998764 4555 6666777765322 3333333346789999997 44555666654555
Q ss_pred --ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-Cc--EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 --d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|.+|.....+....+.-..-.+ ++||++++..+.. |. |.+.|+.+... ..............+.++|+.++.
T Consensus 310 ~~~~~g~~~~riT~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EECCCCCceeEeeccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 4666665555444333223344 4477787777643 44 55555555443 222223334455677888888877
Q ss_pred eee
Q 001190 556 CGT 558 (1128)
Q Consensus 556 ~~~ 558 (1128)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0055 Score=65.80 Aligned_cols=291 Identities=17% Similarity=0.112 Sum_probs=138.6
Q ss_pred EEEEEecCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
+.=+|.+||+.|+.++. +|.-.+|-+ |+.+++..+..-. .........++++++.+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeE
Confidence 34467889987777665 666666644 4444443331111 11222245677888887
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCCCCEEEEEe---C-------------------CCcEEEEec
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGT---E-------------------DSTIHIYNV 902 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~lasg~---~-------------------dg~v~iwd~ 902 (1128)
+... +..|+..|+.+++....+..+..-+....|. ..|+..++-.- . ...|..-|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7665 5689999999998877776666655555554 22566554321 1 123555667
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEc----CCCc-EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG----ADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~----~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
.+|+....+. -..-+..+.|||....++.-+ .|.. -|||-+++..... .++. .......+..=-|.|||..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~--~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVH--RRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS-----TTEEEEEEEE-TTSS-
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeee--cCCCCcccccccccCCCCE
Confidence 7776544443 335567889999766555433 3332 3677665422111 1111 1111234455578999998
Q ss_pred EEEE-e-----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC----------------cEEEEe
Q 001190 978 MLVV-H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----------------NIGVFD 1035 (1128)
Q Consensus 978 l~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg----------------~i~vwd 1035 (1128)
+..- . +..|.-++..+++...... ......+.-++||++++-=+.|. -|++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8762 1 3457778888776533222 23455666778999776522332 567788
Q ss_pred cCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1036 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++.++...-..-. .+-.++.+.....--...|+|++...|.++...|...|+=++
T Consensus 327 ~~~~~~~~l~~h~--~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHD--TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE---------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeecc--CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 8877754322210 011112222222235689999655567778888887777443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.07 Score=62.51 Aligned_cols=109 Identities=11% Similarity=0.010 Sum_probs=65.4
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC-eEE----------EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~----------~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..++.++.++.|.-.|..+++....+..... .+. .+++ .+..++.+. .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 3666677777777778877777776554221 111 1122 123455544 3788999999999998
Q ss_pred eEeccccCC---ceeE-EEEeCCCCEEEEEE------CCCcEEEEECCCCeeeEEEec
Q 001190 578 RTYAGFRKK---SNGV-VQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 578 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
-.+...... .+.+ -.+. +..++++. .+|.|+-+|.++|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 776532110 1111 1111 33555554 268999999999998877543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0098 Score=66.13 Aligned_cols=241 Identities=13% Similarity=0.157 Sum_probs=134.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc----------------------------------------eeceee
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------------------------------------RQHSQI 447 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~----------------------------------------~~~~~~ 447 (1128)
.|+.+.|+++..-||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999999999999999999876532111 011122
Q ss_pred cccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe-EEE--ecC------CCCCeEEEecc---CCCCc---cEEE
Q 001190 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFN--FEG------HEAPVYSICPH---HKENI---QFIF 512 (1128)
Q Consensus 448 ~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~-~~~--~~~------h~~~v~~~~~~---~~~~~---~~l~ 512 (1128)
....++|++++.|.=| +++.|..+|.+.|.|..|.. ++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998666 79999999999999965543 333 222 23357777664 23333 5788
Q ss_pred EEeccCcEEEEecCC-CCceee------ecCCCCeEEEEE-EcCC-C--------------------CeEEEeeeccCCC
Q 001190 513 STAIDGKIKAWLYDT-MGSRVD------YDAPGHWCTTML-YSAD-G--------------------SRLFSCGTSKDGD 563 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~-~~~~~~------~~~~~~~i~~~~-~s~~-g--------------------~~l~~~~~~~~~~ 563 (1128)
+|...|.+.+|.+.. ....+. ...+..+|..+. ++.+ | .++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 222111 113334444443 3222 1 1344443 6
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEE-----eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC--CCCcceEE
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF-----DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLR 636 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 636 (1128)
..++++...+.+...+.....- ....+++ ...+..|++-..+|.++++.+..-+.+........ ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7799999888777665552211 2233344 23456788888999999999999998888776421 11345667
Q ss_pred EcCCCCEEEEEEcCCcEEEEEc
Q 001190 637 FSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++++|..++..+. ..+.++.+
T Consensus 314 is~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SS-SEEEEEEE
T ss_pred ECCCCCEEEEeCc-ccEEEEEE
Confidence 7888886665543 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.7e-05 Score=86.81 Aligned_cols=204 Identities=13% Similarity=0.180 Sum_probs=129.8
Q ss_pred CCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEE
Q 001190 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1128)
Q Consensus 344 ~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1128)
...+.|++..-+.+ -++++|..+|.|.+-.+.....- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44677777655433 58999999999999887643221 1234667888999999998 66777
Q ss_pred EEEe----CCCeEEEEEccCC--Ccceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCC
Q 001190 422 GVAF----TKHLIQLYSYAGS--NDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1128)
Q Consensus 422 as~~----~d~~i~vwd~~~~--~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~ 494 (1128)
|+|- .|..+.|||+.++ .+.... .+.+ ......+++|-.|.+ ++.+|...+.+.++|....+...-.-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 7773 3567999999987 222111 1222 445567899998888 7889998999999993333222222223
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEe-cCCCCceeeecCCC-----CeEEEEEEcCCCC-eEEEeeeccCCCceEE
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~~~~~~~~~-----~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~ 567 (1128)
..+..+.+.|- .+.++++-. ||.|-+|| ....+.......+. ..+..++|.|... .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 33444555442 234666555 99999999 33333222222221 2488999999654 3444443 477888
Q ss_pred EEeCC
Q 001190 568 EWNES 572 (1128)
Q Consensus 568 ~wd~~ 572 (1128)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88865
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.11 Score=60.98 Aligned_cols=148 Identities=12% Similarity=0.083 Sum_probs=89.0
Q ss_pred cEEEEecccceeeecccccccCee---------EEEEcCCCC---EEEEEcCCCcEEEEECCCCcccceeEE--------
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRIT---------GLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTI-------- 955 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~-------- 955 (1128)
.|.-.|+++|+..-.++.....+. -+.+..+|+ .++.+.++|.+.+.|-.+|+.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 566678888888766654222221 223334666 778899999999999999987421100
Q ss_pred eec--CC------------------------CC-CCCccEEEEcCCCCEEEEEe--------------------------
Q 001190 956 HIP--AG------------------------KT-PTGDTRVQFNADQVRMLVVH-------------------------- 982 (1128)
Q Consensus 956 ~~~--~~------------------------~~-~~~v~~v~~s~d~~~l~~~~-------------------------- 982 (1128)
... .+ .. ...-..++++|+..++++..
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 00 00 00012256777666655421
Q ss_pred --------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 --------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 --------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
-+.+.-+|+.+++..-..... .+...-.+.-.|.+++.+..||.++.+|.+||+.+.....
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~----~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKED----FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCC----CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 134777888888776554432 1111111223566788888899999999999999998873
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.025 Score=56.66 Aligned_cols=239 Identities=16% Similarity=0.111 Sum_probs=146.8
Q ss_pred CCeeEEEeccCCC-eEEEEe-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEcCCCCCEEEEEeCC-----CcEEEEe
Q 001190 832 EAVPCIALSKNDS-YVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTED-----STIHIYN 901 (1128)
Q Consensus 832 ~~v~~~~~s~dg~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~lasg~~d-----g~v~iwd 901 (1128)
.....++|+|.-. -++.+- -|+ ..++|..+.+...++....+. .-.=.||| ||.+|...-.| |.|-|||
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEe
Confidence 3445677887543 455554 355 788999888776665433322 22346899 89888765433 6799999
Q ss_pred cccc-eeeecccccccCeeEEEEcCCCCEEEEEcC------C------------CcEEEEECCCCcccceeEEeecCCCC
Q 001190 902 VRVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGA------D------------AQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1128)
Q Consensus 902 ~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------D------------g~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1128)
...+ +.+.++..|.-.-..+.+.+||+.|+.+.. | -++.+.|..+|+.+....+.....
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-- 224 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-- 224 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh--
Confidence 9855 667788888877889999999999887643 1 234556666666555444331111
Q ss_pred CCCccEEEEcCCCCEEEEEe------cCeEEEEecCCcccccccccCCC----CCCCeEEEEEeeCCCEEEEEe-cCCcE
Q 001190 963 PTGDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQDA----LSAPISCAVYSCNSQLVFATF-CDGNI 1031 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~t~~-~dg~i 1031 (1128)
...++.+...+||+..+.+. |.-..|=-...++.+..+..... -..-|-+++..-+..+++..+ ..+..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 15678889999998887753 11122222223333333222110 023456777776666666544 56678
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.+||..+|+++..-... +. -.++ + ..+=|+..+.+|.++++.
T Consensus 305 vi~da~tG~vv~~a~l~-----------da---aGva--~-~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALP-----------DA---AGVA--A-AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccccc-----------cc---ccce--e-ccCceEEecCCceEEecc
Confidence 89999999987765511 11 1122 1 234466777789988874
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.017 Score=61.65 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=127.0
Q ss_pred EEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc--
Q 001190 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-- 912 (1128)
Q Consensus 837 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 912 (1128)
..|.++...|+... .+.|.-|+..+++.. .+. +.+.+.++..-..++. |+++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~-Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGR-LIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCe-EEEE--ccccEEEeccCCceeEEeccc
Confidence 45677777666665 688999999866442 232 2333344443331444 4433 3346677766554422221
Q ss_pred --cc-ccCeeEEEEcCCCCEEEEEcC------C---CcEEEEECC-CCcccceeEEeecCCCCCCCccEEEEcCCCCEEE
Q 001190 913 --GH-QKRITGLAFSTSLNILVSSGA------D---AQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1128)
Q Consensus 913 --~h-~~~V~~l~~s~d~~~l~s~~~------D---g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 979 (1128)
+. ...-+.+...|+|.+.++... + ..=.||-+. .+..+....... ...+.++||||++.+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~------~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL------TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE------EecCceEECCCCCEEE
Confidence 11 134567788899988776444 1 112455555 333322221111 4567899999999888
Q ss_pred EEe--cCeEEEEecCC--cccccc--cccCCCCCCCeEEEEEeeCCCEEEEEecCC-cEEEEecCCCceEEEeCCCCCCC
Q 001190 980 VVH--ETQLAIYDASK--MERIRQ--WTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 980 ~~~--d~~i~v~d~~~--~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
.++ .+.|.-|+... +..... +.......+....++...+|.+.+++..+| .|.+|+.. |+++..+..+.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--- 254 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--- 254 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---
Confidence 876 47788777752 211111 111111256777888889999876555554 99999998 99999888431
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
..+.+++|--.+.+.|..
T Consensus 255 ---------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 ---------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ---------CCCccceEeCCCcCEEEE
Confidence 344666765434444433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.017 Score=64.88 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=147.1
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEE-EEe--CCCcEEEEeccccee
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-IGT--EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la-sg~--~dg~v~iwd~~~~~~ 907 (1128)
.-..+++++++..+.... ++.|.+.|..+.+......-.. ....+++++ +++.+. +-. .++++.+.|-.+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678889988665554 6889999988777776654322 667899999 554444 444 378999999999888
Q ss_pred eecccccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E- 983 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d- 983 (1128)
+.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... - ..............+.++|+|.++.+.. +
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-ccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 8775544345 899999999955544 478899999977754432 1 1000111125667899999999887753 2
Q ss_pred -CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCCceEEEeCCC
Q 001190 984 -TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 984 -~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
+.+...|..++.....-..... . ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 5888888888777665222110 2 5667899999999998754 489999999998888776633
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.022 Score=58.65 Aligned_cols=201 Identities=9% Similarity=0.082 Sum_probs=112.0
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
-...+..++|.|+.+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 455699999999877666555 467888886 57888777533 35577889987 77777766678999999984321
Q ss_pred ------eeecc-----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---CcccceeEEee-c-CCCCCCCccEEE
Q 001190 907 ------VKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIHI-P-AGKTPTGDTRVQ 970 (1128)
Q Consensus 907 ------~~~~l-----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~~-~-~~~~~~~v~~v~ 970 (1128)
....+ ..+...+-+++|.+.++.|+.+-...-..||.+.. ........... . .......++.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 13445688999999988888777777777777764 22211111110 1 111125578899
Q ss_pred EcCCCCEEEE-Ee-cCeEEEEecCCcccccccccCCC------CCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 971 FNADQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 971 ~s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
++|....|.+ ++ ...|..+| .+|+.+..+....+ .-...-.|+|.++|++ +..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 9997655544 43 56788888 56666554443321 1245789999999974 455577766665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=60.59 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=108.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.+..++|.|+.+.|+|+....+.|...+. +|+.+...+ +.+ .+..-.|++.-++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 44569999999997778888888888888886 467664311 333 35677888988888888
Q ss_pred EEeCCCeEEEEEccCCCc-c--eece--ee---cccccceeEEEEecCCCeEEEEEecCCCeEEEEecC----CCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSND-L--RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF 490 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~-~--~~~~--~~---~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~----g~~~~~~ 490 (1128)
+--.++.+.+.++..... + .... .+ ..++..+-.++|.+.++. |+.+-......++... +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 1 1101 11 135567999999999885 4445556566666622 2222111
Q ss_pred --------cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------CeEEEEEEcCCCCeE
Q 001190 491 --------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRL 553 (1128)
Q Consensus 491 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l 553 (1128)
......+.++++++. .+++++-......|..+|. .++....+.... ...-.++|.++|++.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 123445788888876 5577888888888888883 444444443333 257789999999776
Q ss_pred EEe
Q 001190 554 FSC 556 (1128)
Q Consensus 554 ~~~ 556 (1128)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.012 Score=69.24 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEe------CCC--cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCC-CcEEEE
Q 001190 872 PPASTFLAFHPQDNNIIAIGT------EDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-AQLCVW 942 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-g~i~iw 942 (1128)
...+...+++| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 45555542 2222222332 37889999999877776532 222332
Q ss_pred ECCCCcccceeEEeecCC--CCCCCccEEEEcCCCCEEEEEecCeEEE---EecCCcccccc-----cccCCCCCCCeEE
Q 001190 943 SIDTWEKRKSVTIHIPAG--KTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMERIRQ-----WTPQDALSAPISC 1012 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~~h~~~v~~ 1012 (1128)
+-.....+.......... .....+..+.|||||..++...++.|++ -....|. ... +... ....+.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~--l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG--LGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc--cCCcccc
Confidence 221111111111110000 1125799999999999999877888877 4444443 111 1111 1334688
Q ss_pred EEEeeCCCEEEEEecCCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1013 AVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1013 l~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
+.|..++.++ ++..++...+|.+.- |.....+. . ......+.+|+-.+ ..+..+..+|.+.+=.-
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~---------~n~~~~v~~vaa~~---~~iyv~~~~g~~~l~~~ 567 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-S---------RNLSAPVVAVAASP---STVYVTDARAVLQLPNS 567 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccC-C---------CCccCceEEEecCC---ceEEEEcCCceEEecCC
Confidence 9999999955 555555555665432 22211111 0 11123346677665 24666677775554433
Q ss_pred CCCCCCcccCCCC
Q 001190 1092 SESEGKWGVSPPV 1104 (1128)
Q Consensus 1092 ~~~~~~w~~~~p~ 1104 (1128)
.+++.-|-+-+++
T Consensus 568 ~~~~~~W~ev~~l 580 (591)
T PRK13616 568 DSGDQYWREVPGL 580 (591)
T ss_pred CCCCCCceECccc
Confidence 4445568876665
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00064 Score=71.27 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC----------HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1128)
.+.+..+|..|+...|..+.+..|-+|+|...+ +..+-++|.+|+-.-|++.+......-.+.. ..+-|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-SSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-ccHHH
Confidence 344689999999999999999999999998753 7889999999999999999876421111111 23889
Q ss_pred HHHHhHHhHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHHh
Q 001190 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQL 118 (1128)
Q Consensus 75 ~i~~~~~~ell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1128)
.+..+.|++++..|... +|+...|+.++|+.......++.+-..
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999877 999999999999965554555555443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.028 Score=60.44 Aligned_cols=234 Identities=13% Similarity=0.123 Sum_probs=134.6
Q ss_pred cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCe
Q 001190 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1128)
..++.|+.|+.+| +.++++... ...... .+...|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~----------------------~~~~~i----~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP----------------------SKPTRI----LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC----------------------ccceeE----eecceEEEEEEecccCEEEEEcCCc
Confidence 4567788888888 777765110 000000 1334499999999999999889999
Q ss_pred EEEEECCCceEEEEe--------------eCCCCCeeEEE--EcCCCCCEEEEEeCCCcEEEEecccc-----eeeeccc
Q 001190 854 ISLFNMMTFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGTEDSTIHIYNVRVD-----EVKSKLK 912 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~ 912 (1128)
+.++++......... ......+...+ -...+...|+++. ..+|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999999765544311 11222344444 1122444555444 558888887653 3445554
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC-----CCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-----GKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
-.+.+..++|. ++.++.+..+ ...+.|+.++............ .........+.--+++.+|++.+ . +.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~-~-~g 210 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD-N-IG 210 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec-c-eE
Confidence 33778899998 4567766654 4888999977653332211111 00001222233333455555433 2 33
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
+|=-..|+..+.....- .....++++. ..||+..+. +.|.||++.+++++..+.
T Consensus 211 ~fv~~~G~~~r~~~i~W--~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 211 VFVNKNGEPSRKSTIQW--SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEcCCCCcCcccEEEc--CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 33333454444111111 3455666663 457777654 569999999999988887
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.062 Score=61.82 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=128.0
Q ss_pred eeEEEeccCCCeEEEEe--CC----eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-----------Cc
Q 001190 834 VPCIALSKNDSYVMSAT--GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----------ST 896 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~--dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-----------g~ 896 (1128)
+....+||||+++|.+- +| .++++|+++++.+...-.. .....+.|.+ +++.++....+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 44678999999998773 33 3999999999876543111 1223499999 76666555432 23
Q ss_pred EEEEecccceee--ecccccccC--eeEEEEcCCCCEEEEEcC---C-CcEEEEECCCC--cccceeEEeecCCCCCCCc
Q 001190 897 IHIYNVRVDEVK--SKLKGHQKR--ITGLAFSTSLNILVSSGA---D-AQLCVWSIDTW--EKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 897 v~iwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~l~s~~~---D-g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v 966 (1128)
|+.|++.+...- ..+...... ...+..++|+++|+.... + ..+.+.++..+ .......+.... ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~~ 279 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE----DGV 279 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS----SS-
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC----Cce
Confidence 788888765322 334433333 568889999998775332 2 34778888775 111122222111 222
Q ss_pred cEEEEcCCCCEEEEEe----cCeEEEEecCCcccc--c-ccccCCCCCCCeEEEEEeeCCCEEEEEe-cCC--cEEEEec
Q 001190 967 TRVQFNADQVRMLVVH----ETQLAIYDASKMERI--R-QWTPQDALSAPISCAVYSCNSQLVFATF-CDG--NIGVFDA 1036 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~~~----d~~i~v~d~~~~~~~--~-~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg--~i~vwd~ 1036 (1128)
....-+..+.+++.+. .+.|...++.+.... . .+..+ ...+.-..+...+.+|+... .++ .|+++++
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~---~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE---DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC---CCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 2222223444444442 467777787776531 1 22222 34333334444566666543 444 5889999
Q ss_pred CCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC---CcEEEEcCCCCCC
Q 001190 1037 DTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD---GSVKVMEPSESEG 1096 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d---g~i~iWd~~~~~~ 1096 (1128)
..+.....+... ..+.+..+...+....++++.++- +++.-+|+.+++.
T Consensus 357 ~~~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 834444433321 122234454445434444444433 3577778887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.01 Score=65.33 Aligned_cols=175 Identities=15% Similarity=0.189 Sum_probs=104.4
Q ss_pred CeEEEEECCCceEEEEeeCCCC-CeeEE---EEcCC---CCCEEEEEeC----------CCcEEEEecccc----eeeec
Q 001190 852 GKISLFNMMTFKVMTTFMSPPP-ASTFL---AFHPQ---DNNIIAIGTE----------DSTIHIYNVRVD----EVKSK 910 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~~-~v~~l---~~s~~---d~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 910 (1128)
..|++.|..+.+.+.++.-... .+.++ .+..+ ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877766553322 34443 33321 1568887762 288999999884 12221
Q ss_pred c--cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc-ccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeE
Q 001190 911 L--KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 986 (1128)
Q Consensus 911 l--~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i 986 (1128)
+ ....++|++++-- +++++++. .+.|.+|++...+ ........ .....+.....+.++++++ ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheec-------ceEEEEEEeccccEEEEEEcccCE
Confidence 1 2346889998876 44444433 4789999999877 32222222 2223334444456888887 6777
Q ss_pred EEEecCC-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 987 AIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 987 ~v~d~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.++.... ...+..+.. +.....++++.|-.|++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7775543 222322222 2225678999998777899999999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0063 Score=71.45 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=108.0
Q ss_pred CCeeEEEeccCCCeEEEEe-------CC--eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC--------
Q 001190 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-------- 894 (1128)
..+.+.++||||+.++... |. .|.+++.. +.......+ ...+...|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887664 32 36666652 333222222 2488999999 77766665422
Q ss_pred ----CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEE---EECCCCcccceeEEeecCCCCCCCcc
Q 001190 895 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.+.+.+++.++... ...+.|..+.|||||++++... ++.|.+ -....|+............ ....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG-LGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc-cCCccc
Confidence 334444555444332 2346799999999999888766 477777 4444554211111111111 113357
Q ss_pred EEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 968 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
.+.|.+++.+++...++...+|.+.-...........+...++.+++-+++ -++.+..+|.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 899999999765554444455655533332222122122566777776653 35555556633
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.069 Score=60.06 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=155.2
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
....+++.+++..+.... .+.+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455678888886655554 334555555422222212211134567788884455777777789999999877766654
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 985 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 985 (1128)
..--. .-..++++++++.+..+.. ++++.+.|-.+++........ .....++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-------~~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-------NTPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-------CCcceEEECCCCCeEEEEecCCCe
Confidence 43222 4568999999976665544 688888888887766553332 1237899999999888865 899
Q ss_pred EEEEecCCccccccccc--CCCCCCCeEEEEEeeCCCEEEEEecC---CcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 986 LAIYDASKMERIRQWTP--QDALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+.+.|.......+ ... ...-...-..+.+++||+++.+.... +.+.+.|..++......... ..
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~----------~~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV----------GS 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----------cc
Confidence 9999977665553 110 01114455688999999977765544 58999999998887763321 11
Q ss_pred ccceEEEEEecCCCCEEEEE-ECCCcEEEEcCCCCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~-~~dg~i~iWd~~~~~ 1095 (1128)
. .+..+..+| ++..+... +..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 345677778 45555444 444677777766543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.011 Score=70.24 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCEEEEE-eCCCcEEEEecccceeeecccccccC-eeEEEEcCCC-------CEEEEEcCCCcEEEEECCCCcccceeE
Q 001190 884 DNNIIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSL-------NILVSSGADAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 884 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~-------~~l~s~~~Dg~i~iwd~~~~~~~~~~~ 954 (1128)
+..+|+.. .....|+-.|+..|+.+..+..|... |..+ .|+. ..-+.|-.+..+..||..-... ....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceee
Confidence 44554443 35678999999999999999988654 5444 4432 2334466678899999875321 1111
Q ss_pred EeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 955 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
.....-......++++-+.+|..++.+.+|.|++||- .|..-++..+ +.+.+|..|..+.||+||++.+ +.++.++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 1111112236778888888888777777999999994 3333222222 2279999999999999998765 7788888
Q ss_pred ecC
Q 001190 1035 DAD 1037 (1128)
Q Consensus 1035 d~~ 1037 (1128)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.16 Score=57.62 Aligned_cols=167 Identities=11% Similarity=0.136 Sum_probs=92.3
Q ss_pred eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcC
Q 001190 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSA 548 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~ 548 (1128)
.|+||+..|+.+.++.-..+.|.++.|..+ ..|+....||.++++|+.... ...+. .....+....+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 588999889888777655589999999653 467788899999999985333 11111 1111222333444
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCc-eeeEe---ccccC-----Ccee-EEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY---AGFRK-----KSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~---~~~~~-----~~v~-~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+|-.+++. ++.+++.+-.... ..+.+ .+... .... ...++.+....+....++.+++.+....+
T Consensus 138 ~GivvLt~------~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 138 NGIVVLTG------NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCEEEECC------CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 55333332 3344443322211 11111 11000 0011 02234444444444555555544433221
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
. +. ..+++..+++||+++++|.-..+|.+.+.+.
T Consensus 212 ~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 212 Q---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred c---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 1 11 1236899999999999999999999888754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.06 Score=57.94 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=125.4
Q ss_pred cCCCeEEEEeCCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc--------
Q 001190 841 KNDSYVMSATGGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-------- 911 (1128)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-------- 911 (1128)
..++.|+.|.++.+.+++.. ..+..... +...|..+...+ +-+.|++-+ |+.++++++..-.....-
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 46778888885449999993 33333333 233499999999 555555554 599999999864433211
Q ss_pred ------cccccCeeEEE--EcCCCCEEEEEcCCCcEEEEECCCCccc---ceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 912 ------KGHQKRITGLA--FSTSLNILVSSGADAQLCVWSIDTWEKR---KSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 912 ------~~h~~~V~~l~--~s~d~~~l~s~~~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
......+...+ -...+...+.+...+.|.+|........ ....+.. +..+..++|. +..+++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEEE
Confidence 11223344444 1123333333444568999988764211 1111111 1678888888 667888
Q ss_pred EecCeEEEEecCCcccccccccCCC---------CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE--EeCCCC
Q 001190 981 VHETQLAIYDASKMERIRQWTPQDA---------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC--YIAPST 1049 (1128)
Q Consensus 981 ~~d~~i~v~d~~~~~~~~~~~~~~~---------h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~ 1049 (1128)
+..+...+.|+.++.....+..... ...++..+.. +++.+|++- |. +-+|=-..|+... .+.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~--- 226 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQ--- 226 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc-eEEEEcCCCCcCcccEEE---
Confidence 8788899999997766444332211 0223444444 346666653 22 3333223444322 111
Q ss_pred CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1050 YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
.. ..+..+++.. .++++.+. +.|.||++.+++.
T Consensus 227 --------W~--~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 227 --------WS--SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred --------cC--CchhEEEEEC---CEEEEECC-CEEEEEECcCCcE
Confidence 11 1345566643 35555554 5599999999864
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.038 Score=56.33 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=118.1
Q ss_pred CeeEEEeccCCCeEEEEe-CC--eEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 833 AVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
-...+.|..+|.++-+.+ -| .|+.+|+.+++......-...- =-.++.. ++++....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 355788878888877766 44 4999999999987665533221 1233333 4566667778999999999999888
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 988 (1128)
.++.- .+.-++++ .|++.|+.......|.++|..+.+....+. |
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~---------------------------------V 167 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ---------------------------------V 167 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE----------------------------------
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE---------------------------------E
Confidence 88763 46777887 456666666556779999988755433222 2
Q ss_pred EecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccC---CCCccceE
Q 001190 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN---GSQTVYPL 1065 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 1065 (1128)
.+ .+.. -..++-+.|- +|...|=.=....|..-|.++|++...+....-....... +....-..
T Consensus 168 ~~--~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN 234 (264)
T PF05096_consen 168 TD--NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN 234 (264)
T ss_dssp EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE
T ss_pred EE--CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE
Confidence 21 1121 2234455553 6665555556778888999999999888632211110000 01122357
Q ss_pred EEEEecCCCCEEEEE
Q 001190 1066 VVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~s~ 1080 (1128)
.|||.|..+.+++||
T Consensus 235 GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 235 GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred eEeEeCCCCEEEEEe
Confidence 899999766677776
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.08 Score=56.66 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=133.4
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeE
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 430 (1128)
.|.|++..++.+--..+.|.-|+..+|+... + .+.+.+.++..-.++..|+++.. .+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEcc--cc
Confidence 4566767677777778899999988775431 1 13344555555555556655533 36
Q ss_pred EEEEccCCCcceeceeec-cc-ccceeEEEEecCCCeEEEEEecCC------------CeEEEEecCCCeEEEecCCCCC
Q 001190 431 QLYSYAGSNDLRQHSQID-AH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1128)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~fs~d~~~~~l~s~s~d------------~~i~vWd~~g~~~~~~~~h~~~ 496 (1128)
.+++.+++.....+.... +. ...-+.+...|+|. +.+ +... |.|+..|..|..+..+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 777877665433222111 22 24667889999998 333 3322 2333333456666666666556
Q ss_pred eEEEeccCCCCccEEEEEec-cCcEEEEecCC-----CCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 497 VYSICPHHKENIQFIFSTAI-DGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~-----~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
-+.++|+| |++.++.+.. .+.|.-|+++. ... ........+..-.++...+|.+-+++.. +.+.|.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 68899987 5556666544 47888887763 111 1222233445566777888887754432 2348999
Q ss_pred EeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 604 (1128)
|+.. |+++..+..... .+++++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999988887754 56677775 4455555554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.064 Score=59.44 Aligned_cols=82 Identities=12% Similarity=0.225 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-----------------E-EE
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-----------------H-FL 601 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~-l~ 601 (1128)
.+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+. + ++
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 57889999998876664 36889999999999999999998875444332222111 2 23
Q ss_pred EEECCCcEEEEECCCCeeeEEEec
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+-.-|.|.||++.+|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 355789999999999988877764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=57.28 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=115.6
Q ss_pred EEeccCCCeEEEEe-C-----CeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC----------------
Q 001190 837 IALSKNDSYVMSAT-G-----GKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---------------- 893 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~---------------- 893 (1128)
=+|||||.+|.... | |.|-|||...+ +.+.++..|.-.-..+.+.+ ||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchh
Confidence 47999999998774 2 66999998743 55677888888888999999 8998887642
Q ss_pred --CCcEEEEecccceeeec--cc--ccccCeeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccceeEEeecC-CC
Q 001190 894 --DSTIHIYNVRVDEVKSK--LK--GHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPA-GK 961 (1128)
Q Consensus 894 --dg~v~iwd~~~~~~~~~--l~--~h~~~V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~-~~ 961 (1128)
.-++.+.|..+|+++.+ +. .+.-.|..++..+||+.++-+-..|. --+=-...++..+.+...... ..
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 11344555556655533 22 35567888999888887765432221 111111122222111111000 00
Q ss_pred CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 962 TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
....+-+|+...+..+++..+ .+...+||..+|..+..-...+ +.-.-+...=+++.+.+|.+..+.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-------cccceeccCceEEecCCceEEecc
Confidence 004567788887777777654 6788999999999887655432 111223333345555678887773
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.16 Score=56.35 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=57.9
Q ss_pred EEEeccCCCeEEEEeCCeEE----EEECC-----CceEEEEee----CCC-CCeeEEEEcCC----------CCCEEEEE
Q 001190 836 CIALSKNDSYVMSATGGKIS----LFNMM-----TFKVMTTFM----SPP-PASTFLAFHPQ----------DNNIIAIG 891 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~dg~i~----vwd~~-----~~~~~~~~~----~~~-~~v~~l~~s~~----------d~~~lasg 891 (1128)
.++.+|++++||.+..+++. -|+.. .+....... ... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 56889999999999865533 35331 122222222 111 45777665441 56899999
Q ss_pred eCCCcEEEEecccceeeecccccccCeeEEEEc
Q 001190 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 924 (1128)
..+|.|++|.- +|.++..-.-|.++|..+.+-
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 676666655678888777764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.035 Score=65.74 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=118.5
Q ss_pred eEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEeccccee--eecccccccCeeEEE
Q 001190 853 KISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDEV--KSKLKGHQKRITGLA 922 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 922 (1128)
.+..||..+.+-.. .+..... -.+++.. ++.+++.|+.+ ..+..||..+..- +..+....... ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 46677877654322 2211111 1223332 67788888854 3477888776532 22222111111 22
Q ss_pred EcCCCCEEEEEcCCC-----cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c-------------
Q 001190 923 FSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E------------- 983 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d------------- 983 (1128)
..-+|+..+.||.++ .+..||..+.+-. ......... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r-~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL-SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc-ccccEE--EECCEEEEEeCCCccccccccccccc
Confidence 233678888888764 4788998765321 111111000 111112 23566666653 2
Q ss_pred ----------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC------CcEEEEecCC-CceEEEeC
Q 001190 984 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD------GNIGVFDADT-LRLRCYIA 1046 (1128)
Q Consensus 984 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d------g~i~vwd~~~-~~~~~~~~ 1046 (1128)
..+..||..+.+-...-... ......-+..-+|++.+.|+.+ ..+..||.++ .+-. .+.
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~---~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~ 497 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFW---TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LIT 497 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCC---cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Ecc
Confidence 24777887766442221111 1111222234467777777654 2467899887 4432 222
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC--cEEEEcCCCCCCCcccCCCCCCCcc
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG--SVKVMEPSESEGKWGVSPPVDNGIL 1109 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg--~i~iWd~~~~~~~w~~~~p~~~~~~ 1109 (1128)
. ++... .. .+++.. ++.+.++||.|| .+-.+|+.+.+ |....|.-++++
T Consensus 498 ~---m~~~r---~~----~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 498 T---TESRL---SA----LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c---cCccc---cc----ceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 11111 11 122222 678999999999 78889999876 999998877655
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.023 Score=61.91 Aligned_cols=139 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEE-----EEEecCCCeEEEEe--cCCC-eEEEecCC
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-----VVTCGDDKLIKVWE--LSGR-KLFNFEGH 493 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~-----l~s~s~d~~i~vWd--~~g~-~~~~~~~h 493 (1128)
.++.....++-.|++.|+.+.. ..-|.. |+-+.+.|+.+.-. -+.|-.|+.|+-|| ..|. .+..-.+|
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeE---Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEE---WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eCCCCcCcceeeecccceeeeE---eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3455556688889999987763 444555 78888888754211 23466688999999 5665 33333444
Q ss_pred C----CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 494 E----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 494 ~----~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
+ ....|.+- .++ .++++|+.+|.||+||--.......+.+-+.+|..+..+.||++|++.+ +..+.+.
T Consensus 426 qy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~tyLlLi 497 (644)
T KOG2395|consen 426 QYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----KTYLLLI 497 (644)
T ss_pred ccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----ccEEEEE
Confidence 3 23445443 334 4899999999999998744455556788888999999999999999876 6677777
Q ss_pred eCC
Q 001190 570 NES 572 (1128)
Q Consensus 570 d~~ 572 (1128)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.11 Score=57.34 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=117.2
Q ss_pred CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----CCEEEEEeC----------CCeEEE
Q 001190 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1128)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~----------d~~i~v 432 (1128)
+.|+|.|..+.+.+....+. -..+-..+..+.|..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 35778887777665432221 0111122333444433 468887753 288999
Q ss_pred EEccCC----CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC--CCCCeEEEeccCC
Q 001190 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHK 505 (1128)
Q Consensus 433 wd~~~~----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~--h~~~v~~~~~~~~ 505 (1128)
+++... ..++.... ....++|++++-. +|. ++++. .+.|.+|+ ...+.+..... ....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 23333222 2457889999877 443 34433 48899999 44441322222 23356666653
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-------C-
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-------~- 574 (1128)
+.+++.|...+.+.++.++....... .......++++.|-++++.++++- .++.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 34899999889998886665333222 223455789999987776555543 588888887652 1
Q ss_pred -ceeeEeccccCCceeEE---EEeC--CC------CEEEEEECCCcEEE
Q 001190 575 -TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (1128)
Q Consensus 575 -~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~s~dg~i~i 611 (1128)
++.....-|-+..+.++ ++.| .+ ..++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333334444455555 3333 11 13666777777763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.72 Score=49.12 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=82.8
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
...+.+..+..++ |+++++++.......-||--...-...-+.-+.+|.++.|+|++.+.+.+ ..|.|+.=+.....
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG- 218 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-
Confidence 3456788888898 99999888655555667643221111222245789999999998876644 78888887722111
Q ss_pred cceeEEeecCC-CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC
Q 001190 950 RKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 1028 (1128)
Q Consensus 950 ~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d 1028 (1128)
.......... ...-.+..++|.+++...+++..+.+ +.....|+.-..-............+.|.++.+-++.| .+
T Consensus 219 -~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~ 295 (302)
T PF14870_consen 219 -ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QD 295 (302)
T ss_dssp -EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred -cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CC
Confidence 1111111111 11244788999999888888777744 44555555433333222226678999998776655555 68
Q ss_pred CcEEEE
Q 001190 1029 GNIGVF 1034 (1128)
Q Consensus 1029 g~i~vw 1034 (1128)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 887655
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0042 Score=68.96 Aligned_cols=94 Identities=18% Similarity=0.339 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE-EEEEccCCCEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 422 (1128)
...|.-+.|+|.-. ++|++..+|.|.|..+. -+.+.. +.-|.-.++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 34688899999987 89999999999999887 333322 333555666 999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA 460 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs 460 (1128)
.|-.||+|++-|+++|..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998766532 12234556666665
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0049 Score=68.44 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=78.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee-EEEEcCCCCEEEEEcCCCcEEEEECCCCccc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~ 950 (1128)
...+.-+.|+| .-.++|.+..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34577889999 88899999999999999988 777888887777787 9999999999999999999999999998876
Q ss_pred ceeEEeecCCCCCCCccEEEEc
Q 001190 951 KSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
...... ....+..+.|+
T Consensus 98 ~~~~~s-----~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFS-----VETDISKGIWD 114 (665)
T ss_pred eccccc-----cccchheeecc
Confidence 654221 11567777776
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=2.2 Score=52.05 Aligned_cols=242 Identities=8% Similarity=0.003 Sum_probs=118.5
Q ss_pred cceEEEEEccCCCEEEEEeCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----Ce
Q 001190 407 ISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~ 476 (1128)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357778999999999976432 3588999988864322 1222 1 146999999986 34443322 35
Q ss_pred EEEEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEec---cCcEEEEecCC--CCceeeecCCCCeEEEEEEcC
Q 001190 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 477 i~vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~--~~~~~~~~~~~~~i~~~~~s~ 548 (1128)
|..++ .++ +....+........ +......++++++..+. ++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 67777 555 22333443333333 22222335566555443 35688888533 222222322223222222 2
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccc-cCCceeEEEEeCCCCEEEEEECCCcEEEE--ECCCCeeeEEEe
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFW--DMDNVNILTSTD 624 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~~ 624 (1128)
.+..+......+.....|...++.. ++. ..+..+ .+..+..+.+.. +..+++...+|.-+++ +..++ .+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEec
Confidence 2334443332222344555556552 322 233333 333566677762 3344445556665554 44333 333333
Q ss_pred cCCCCCCcceEEEc--CCCC-EEEEEEc---CCcEEEEEcccC
Q 001190 625 AEGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1128)
Q Consensus 625 ~~~~~~~v~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~ 661 (1128)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1111 112223344 3433 4433332 466778887765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.003 Score=43.35 Aligned_cols=38 Identities=34% Similarity=0.581 Sum_probs=33.7
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
+....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=2.6 Score=51.43 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=119.5
Q ss_pred cEEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.+..+.+||||++++.+-..+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999995544433333 788899988764321 0111 11469999999988
Q ss_pred EEEeCC------CeEEEEEccCCC--cceeceeeccccccee-EEEEecCCCeEEEEEecC-CCeEEEEe--c-CCCeEE
Q 001190 422 GVAFTK------HLIQLYSYAGSN--DLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCGD-DKLIKVWE--L-SGRKLF 488 (1128)
Q Consensus 422 as~~~d------~~i~vwd~~~~~--~~~~~~~~~~h~~~v~-~l~fs~d~~~~~l~s~s~-d~~i~vWd--~-~g~~~~ 488 (1128)
+....+ ..|..+++.++. ... .+........ .+..+.|++.+++.+.+. ++.+.+++ . ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL---VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE---EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 776542 357778888772 222 2333333333 333444888643333332 35688888 2 344322
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEE--ecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAW--LYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~w--d~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.+..-.+....+. +. .+.+++.... ....++. ++........+..+ ...+..+.+. ++.|+.... .++.
T Consensus 264 ~~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCE
Confidence 2222222222222 22 1223332222 1233333 44321222223333 3367777776 345554443 2245
Q ss_pred ceEEEEeCCCCceeeEec-cccCCceeEEEEe--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 001190 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 618 (1128)
..+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 556667755433 33333 1111 22223344 3334 333333 45778889988765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.037 Score=60.41 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC--EE-----EEEcCCCcEEEEECCCCcccceeEEeecC
Q 001190 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN--IL-----VSSGADAQLCVWSIDTWEKRKSVTIHIPA 959 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l-----~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~ 959 (1128)
+|.++.....++-.|++.|+.+.++.-|.+ |+-+.+.|+.+ .| +.|-.|..|+=||..-...-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667899999999999999988866 88888988764 22 22445788999998743221111111111
Q ss_pred CCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 960 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
-.......+.+-..+|..++.+.+|.|++||- .+..-++..+. ...+|..+..+.||++|+..+ +.++.+-++.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 12225566777777776666667999999997 45444433332 289999999999999988665 6677776653
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.5 Score=48.28 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeee-EEEecCCCC-CCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 597 QNHFLAVGEDSQIKFWDMDNVNIL-TSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 597 ~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
+.++++.-..+.|....++.+..+ ......... .++..+++.|||.+.++...+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 344555445677888777644332 222212222 2688999999999988888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.55 Score=49.28 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=90.1
Q ss_pred CeeEEEEcCCCCCEEEEEe---CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCCcc
Q 001190 874 ASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS-IDTWEK 949 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd-~~~~~~ 949 (1128)
.+.+.++++ +++.+|... ....++++..... ....+.+ ..+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 676665544 3344555543322 2222233 3788889999988777777677777774 333332
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecC---Cccc--c-cccccCCCCCCCeEEEEEeeCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS---KMER--I-RQWTPQDALSAPISCAVYSCNS 1019 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~---~~~~--~-~~~~~~~~h~~~v~~l~~s~dg 1019 (1128)
........... ..|..+.+||||..++... ++.|.+--+. .+.. + ............+..+.|.+++
T Consensus 101 -~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 101 -EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred -eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 12222221111 2789999999999999854 6777776554 2201 1 1111111125688999999999
Q ss_pred CEEEEEecCC
Q 001190 1020 QLVFATFCDG 1029 (1128)
Q Consensus 1020 ~~l~t~~~dg 1029 (1128)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 9877765444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.62 Score=47.76 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=119.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc-cccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~ 841 (1128)
...-..++.|..+|..+-+++.-|.-.+- .+++.+|+.... .+. ...--..+++..
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 34456788998889888888876643332 224444443321 121 222234455544
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----c
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----K 916 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~ 916 (1128)
|.-+.++--++...+||..+.+.+.++.-. +.=..++. |++.|+.......++++|..+-+..+.+.... .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 443444555899999999999999888643 44456663 56666666667789999988776666554332 2
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC---------CCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---------KTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
.++-+.+- +|...|=.-....|..-|..+|+......+..... ......+.+|+.|....+.+....--+
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ 254 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK 254 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence 35567775 67777777777788888999998877665432211 112567899999988877776544444
Q ss_pred EEec
Q 001190 988 IYDA 991 (1128)
Q Consensus 988 v~d~ 991 (1128)
+|.+
T Consensus 255 lyeV 258 (264)
T PF05096_consen 255 LYEV 258 (264)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=2.9 Score=50.41 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=94.6
Q ss_pred eEEEEECCCceEEEEeeCCCC----CeeEEEEcCCCCC-EEEEEe-----------CCCcEEEEeccc-ceeeecccccc
Q 001190 853 KISLFNMMTFKVMTTFMSPPP----ASTFLAFHPQDNN-IIAIGT-----------EDSTIHIYNVRV-DEVKSKLKGHQ 915 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~----~v~~l~~s~~d~~-~lasg~-----------~dg~v~iwd~~~-~~~~~~l~~h~ 915 (1128)
.|+++|..+++.+..+....+ .+.++.|+..+.. ++++|. .+|.++.|++-. |+.+ .|- |.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ell-h~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELL-HK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eee-ec
Confidence 378888887777665543222 4667777763444 444443 345577777643 3322 222 32
Q ss_pred cCee--EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC
Q 001190 916 KRIT--GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS 992 (1128)
Q Consensus 916 ~~V~--~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~ 992 (1128)
..+. -.++.|-..++++ +....+++||+...+.+.....+. .+..++.++ ..+.++++|+ ...+.++..+
T Consensus 932 T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~----~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKF----IPNRISSIQ--TYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred cCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhcc----CceEEEEEe--ecceEEEEeeccceEEEEEEe
Confidence 2222 2355565555554 345689999998876655544432 112333333 3455777765 3444444333
Q ss_pred C-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 993 K-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 993 ~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
. ++.+..+... .-...|+++.+-..+ -+|.+..-|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD-~~pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADD-PVPRHVTALELLDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCC-CccceeeEEEEecCC-ceeeccccCcEEEEECC
Confidence 2 2233333322 225667777765444 47778777877777654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.09 Score=45.51 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=65.1
Q ss_pred EEEEEE---eCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 347 VISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 347 V~~v~f---spdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
|+++++ .-||..-|++||.|..|+||+=+ +.+.. ..-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 555555 45676788999999999999843 22221 113567888887766 56889
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~ 478 (1128)
+..+|+|-+|+-... ..+ .+ .+..+.++++.. ||.. -|++|=.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-eee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986432 111 22 222356665543 4444 577777777653
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.28 Score=53.48 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=105.6
Q ss_pred CcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---
Q 001190 775 SAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--- 850 (1128)
Q Consensus 775 ~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 850 (1128)
+.++|+..+ ..+.|.+.|+......|.-..+ .....+.. -.+ . .....+-.-|+|++++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv----------Ie~~ev~~-k~g--~-s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV----------IEPEEVFE-KTG--L-SRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEE----------E-HHHHHH-HH---E-EEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEee----------eCHHHHHh-hcC--C-CCCceeeecCCccEEEEeccCC
Confidence 345666666 5788999987755433221111 11100000 000 0 1111223347898888772
Q ss_pred C----CeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEEEe--------------------CCCcEEEEecc
Q 001190 851 G----GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT--------------------EDSTIHIYNVR 903 (1128)
Q Consensus 851 d----g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~lasg~--------------------~dg~v~iwd~~ 903 (1128)
+ |.+.++|-++.+.......... --..+-|.| ..+.+++.. ...++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 4589999999888877764322 234566777 666776654 23579999999
Q ss_pred cceeeeccccccc--CeeEEEEcCC--CCEEE-EEcCCCcEEEE-ECCCCcccceeEEeecCCC---------------C
Q 001190 904 VDEVKSKLKGHQK--RITGLAFSTS--LNILV-SSGADAQLCVW-SIDTWEKRKSVTIHIPAGK---------------T 962 (1128)
Q Consensus 904 ~~~~~~~l~~h~~--~V~~l~~s~d--~~~l~-s~~~Dg~i~iw-d~~~~~~~~~~~~~~~~~~---------------~ 962 (1128)
+.+.++++.--.. ....|.|..+ ..+=+ .+.-..+|..| .-+.++-.....+.+.... .
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 9999988864332 3456666554 33322 22334444444 3344432222222222110 0
Q ss_pred CCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccccccc---ccC-------------CCCCCCeEEEEEeeCCCEEEE
Q 001190 963 PTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW---TPQ-------------DALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~---~~~-------------~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
+.-++.+..|.|.++|.++. .|.++.||++.-...+.. ... ..-.+...-+..|-||+.|++
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 24578999999999999975 999999999864332211 100 001234578889999998887
Q ss_pred Ee
Q 001190 1025 TF 1026 (1128)
Q Consensus 1025 ~~ 1026 (1128)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 65
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.7 Score=45.33 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=62.9
Q ss_pred EEEEEecCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
++++|+.+.+.+....+ +-.|.-||.+... |... ..-.+++++..+..... ....+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~t----G~~s--nr~~i~dlrk~~~~e~~--------~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT----GDLS--NRKVIFDLRKSQPFESL--------EPDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCc----cccc--CcceeEEeccCCCcCCC--------CCCcceEccCCcEE
Confidence 45677766666655443 5566667743211 1111 11124455443322211 12245556688877
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcC
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~ 882 (1128)
++.- .++|...|..+|+.+.+++-....|+|++|--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 78899999999999999999999999999954
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0098 Score=40.63 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 862 ~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345667778889999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.051 Score=64.76 Aligned_cols=249 Identities=11% Similarity=0.038 Sum_probs=139.5
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CC-eEEEEECCCceEEE-----EeeC------CCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
..-++..++..+|++..++.. +| .|..||+.+...-. -+.. ...-..++.|.|.-....|....|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 345677778888987766553 44 48999997543321 1111 2233567788873334456777899
Q ss_pred cEEEEecccce-eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 896 TIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 896 ~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
.|++..+.-.. ....+. -...+++++|+|.|+.++.|-..|++.-|...-... ..++.........|.+|+|-..
T Consensus 179 sl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred chhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCCcceeEEEEecc
Confidence 99988765332 222222 446789999999999999999999999887654321 1122222222256777777777
Q ss_pred CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc
Q 001190 975 QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 975 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
..++++-.. -++ . . ..+...+++.+ .-.-+|.+..-..-.+..-. ....
T Consensus 255 ~eflvvy~n--------~ts-----~-~----~dpd~y~~~~~------k~kp~g~~nF~E~~d~tppf-------g~~~ 303 (1405)
T KOG3630|consen 255 QEFLVVYGN--------VTS-----E-T----DDPDSYDQKMY------KIKPDGSANFQETFDITPPF-------GQIV 303 (1405)
T ss_pred eeEEEEecc--------ccc-----C-c----CCchhhhhccc------cccCcceeeeccccCCCCCc-------cccC
Confidence 666665221 111 0 0 01111111111 01123333332222221100 0000
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCCCCCcccCCCCCCCccCCCCCCCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTS 1119 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~~~~w~~~~p~~~~~~~~~~~~~~~~ 1119 (1128)
-+.|...++-..|.+.+.++++.|+ ....|-+|... ..|.+..+.|. .+...|.+.++.
T Consensus 304 --rq~h~y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde-~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 304 --RQPHMYKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDE-KRAVLPISEKTD 363 (1405)
T ss_pred --ccchhHHHhhhhhcccccceEEEecccccchhhhhhh---cceeecccccc-ceeeecccccCC
Confidence 0123333455778887777665554 44568999883 45999999887 777778777776
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.31 Score=57.68 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=128.3
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCC-C-----cEEEEecccce
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTED-S-----TIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~~ 906 (1128)
..+.+++.|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 3 3488899887743322211 22223445554 56888999988 3 57788887654
Q ss_pred e--eecccccccCeeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccceeEEeecCCCCCCCccEEE-EcCCCCEE
Q 001190 907 V--KSKLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ-FNADQVRM 978 (1128)
Q Consensus 907 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-~s~d~~~l 978 (1128)
= +..+........... -+|.+.|.||.||. +-.||..+.+-...-+.. ......+ ..-+|+..
T Consensus 361 W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-------~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-------TRRSGHGVAVLGGKLY 431 (571)
T ss_pred eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-------cceeeeEEEEECCEEE
Confidence 2 222222222222222 26788899999864 667777664421111111 1122222 23356666
Q ss_pred EEEe-c------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-----EEEEecCCCceEEEeC
Q 001190 979 LVVH-E------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-----IGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 979 ~~~~-d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-----i~vwd~~~~~~~~~~~ 1046 (1128)
++|+ + .++..||..+..-...-.... ...-.. .-.-++++.+.|+.|+. |..||..+.+-...-.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 6543 2 458899988775433222211 111112 23347777888887763 7889988776544311
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc-----EEEEcCCCCCCCcccCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~-----i~iWd~~~~~~~w~~~~p 1103 (1128)
+... .++ ..++ ..++.+.+.|+.||. |..||..+.+ |....+
T Consensus 509 ----m~~~---rs~----~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 509 ----MTSP---RSA----VGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ----Cccc---ccc----ccEE--EECCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1111 111 1111 125788999999984 7788888866 888766
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.22 E-value=3 Score=47.17 Aligned_cols=126 Identities=21% Similarity=0.374 Sum_probs=78.5
Q ss_pred ecCCCcEEEEEEeCC----CCcEEEEeeccCeEEEEEcc-----CCceecccccccccccccCccccceeccCCCcceEE
Q 001190 341 LHQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELA-----MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 341 ~~h~~~V~~v~fspd----g~~lla~gs~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
++.-+.|..+.|.|- -..|||+ .....|.||.+. +++.+..+..++-+ ++ .---..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e------~~--------pvLpQG 117 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIRE------PF--------PVLPQG 117 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccC------Cc--------ccCCCc
Confidence 444456999999986 3347776 477899999985 23333332222110 00 011224
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
+.|+|....|++-.....=.++++..... +....+ ...+.|.|.+|.+||+++.++.|+ .=.-++||...
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 78999999988876655545667654322 121123 456779999999999986555555 55778999333
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.69 Score=48.54 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=90.7
Q ss_pred CCeeEEEeccCCCeEEEEe--CCe--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe-cccce
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDE 906 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~ 906 (1128)
..+.+.++|+||+.+|... ++. +.++.. +....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 544 555544 33333321 233788899999 688777777677777774 33332
Q ss_pred ee-ecc--cccccCeeEEEEcCCCCEEEEEc---CCCcEEEEECCCCccc----ceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 907 VK-SKL--KGHQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDTWEKR----KSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 907 ~~-~~l--~~h~~~V~~l~~s~d~~~l~s~~---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
.. ..+ ..-.+.|..+.+||||..+|... .++.|.+=-+.....- .......... ....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCE
Confidence 21 111 11112899999999999887655 3577777665432211 1111121111 126788999999999
Q ss_pred EEEEEe
Q 001190 977 RMLVVH 982 (1128)
Q Consensus 977 ~l~~~~ 982 (1128)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 888864
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.23 Score=43.05 Aligned_cols=103 Identities=7% Similarity=0.059 Sum_probs=61.6
Q ss_pred eEEEeccC-CCC-ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 VYSICPHH-KEN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 v~~~~~~~-~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|+++++.. +.+ ...|++|+.|..||+|+- .....++. ....|.+++-...++ ++.+. .+|+|-+|+- .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l----~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGR-FAYAL----ANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCE-EEEEe----cCCEEEEEeC--c
Confidence 55666543 222 268999999999999953 23333433 455688888777755 44444 3888999875 3
Q ss_pred ceeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIK 610 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~ 610 (1128)
+.+...+..+. .+....+..++ ..|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33333333332 33333333332 3688888888774
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.13 Score=61.49 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=96.7
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCC-eEEEeccCC---CCccEEEEEeccCcEEEEecCCCCceeee-c----C
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D----A 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~----~ 536 (1128)
+|........|+-.| ..|+.+..+..|... |..++-... -+....+.|-.++.+..||.+..+..... . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 455555668899999 999999999888754 777653211 01234567778889999999876532221 1 1
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.....+|++-+.+|. ||+|+ .+|.|++||--..+....+++... +|..+..+.||+++++.+.. .|.+++.
T Consensus 576 ~~~~Fs~~aTt~~G~-iavgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGY-IAVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCce-EEEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 233678888888885 55555 488999999654444455666554 89999999999998887754 5556554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.8 Score=46.12 Aligned_cols=242 Identities=15% Similarity=0.133 Sum_probs=119.6
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEee----CCCCCeeEEEEcCC---CCCEEEEEeCC--------C
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGTED--------S 895 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~v~~l~~s~~---d~~~lasg~~d--------g 895 (1128)
.+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999988876699999999 44443 22221 23446789999982 24444444422 2
Q ss_pred cEEEEecccc-------eee-ecccc---cccCeeEEEEcCCCCEEEEEcCCCc-----------EEEEECCC-Ccccce
Q 001190 896 TIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGADAQ-----------LCVWSIDT-WEKRKS 952 (1128)
Q Consensus 896 ~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~~~Dg~-----------i~iwd~~~-~~~~~~ 952 (1128)
.|.-|.+..+ +.+ ..+.. .......|.|.|||.+.++.+..+. =+|+.+.. ++....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 3444444333 111 11111 1223456999999988777765432 01222111 110000
Q ss_pred eEE--------ee-cCCCCCCCccEEEEcCC-CCEEEE--EecCeEEEEecCCcccc----cc------------cccC-
Q 001190 953 VTI--------HI-PAGKTPTGDTRVQFNAD-QVRMLV--VHETQLAIYDASKMERI----RQ------------WTPQ- 1003 (1128)
Q Consensus 953 ~~~--------~~-~~~~~~~~v~~v~~s~d-~~~l~~--~~d~~i~v~d~~~~~~~----~~------------~~~~- 1003 (1128)
.+. .+ ..+. .....++|+|. |.+.++ +.+..=.|..+..+... .. ....
T Consensus 163 nP~~~~~~~~~~i~A~Gl--RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGL--RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp STTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CccccCCCceEEEEEeCC--CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000 00 0000 34567999999 666665 22333333333333210 00 0000
Q ss_pred --------CCCCCCeEEEEEee-------CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEE
Q 001190 1004 --------DALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1068 (1128)
Q Consensus 1004 --------~~h~~~v~~l~~s~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1128)
..+...+..+.|-. +|.++++.-..+.|....++++..+..... +-......+..++
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--------FLGGFGGRPRDVA 312 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--------ECTTSSS-EEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--------ccccCCCCceEEE
Confidence 01235566677754 344666655567787777775543322220 0012333678999
Q ss_pred EecCCCCEEEEEECCCcEE
Q 001190 1069 AHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1069 ~~p~~~~~l~s~~~dg~i~ 1087 (1128)
+.| |+.++++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 699999988888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.8 Score=46.13 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=90.3
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEE-Eecccceee-ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHI-YNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~i-wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
...+..+.+.+ ++.+++++. .|.+.. ++ ..++.- ..-..-...++++.+.++++.++.+ ..|.+++=..+.|..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899998 777766554 555443 22 112211 1112234578999999998876654 567665333444432
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg 1029 (1128)
-... ..........+..+.+.+++..++++.+|.+. .....++.-........-......+.|..+++.+++| ..|
T Consensus 248 W~~~--~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G 323 (334)
T PRK13684 248 WSKP--IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG 323 (334)
T ss_pred cccc--cCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence 1111 11111111346778999999888887777655 4445555444332211113467888888777766655 588
Q ss_pred cEEEEec
Q 001190 1030 NIGVFDA 1036 (1128)
Q Consensus 1030 ~i~vwd~ 1036 (1128)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887764
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.11 E-value=3.2 Score=46.48 Aligned_cols=277 Identities=10% Similarity=0.134 Sum_probs=145.6
Q ss_pred eCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-----CCCEEEEEeCC
Q 001190 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1128)
Q Consensus 353 spdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las~~~d 427 (1128)
+++++..+++||..|.++||+...+..... ...+...-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 355566789999999999999855442110 0011222356787777643 3345555 455
Q ss_pred CeEEEEEccCCC-------cceeceeeccccc--ceeEEEEec----CCCeEEEEEecCCCeEEEEecCCCeE-EEecC-
Q 001190 428 HLIQLYSYAGSN-------DLRQHSQIDAHVG--AVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKL-FNFEG- 492 (1128)
Q Consensus 428 ~~i~vwd~~~~~-------~~~~~~~~~~h~~--~v~~l~fs~----d~~~~~l~s~s~d~~i~vWd~~g~~~-~~~~~- 492 (1128)
..+.||.+.... ... +..+..|.- ....++.-| .|+. ++..=+-||.+.+++.+.-.. +.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 678888884221 111 112223322 222233322 2233 788889999999999554443 33332
Q ss_pred -CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-----------------------ceeeecCCCC--eEEEEEE
Q 001190 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLY 546 (1128)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~i~~~~~ 546 (1128)
..+++ ++.+.. +.+++++.+..+..|....-. ..+.+..... .|..+.+
T Consensus 175 llPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~ 249 (418)
T PF14727_consen 175 LLPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRF 249 (418)
T ss_pred CCCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEc
Confidence 33444 333333 468888888888888652110 0111221111 2334444
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC----CC---CEEEEEECCCcEEEEECCCCee
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
+.....+++-+ +..+.+.+. +|.+....+-.-. +...+.|.. ++ ..++.++.++.+.||.-. ++
T Consensus 250 ~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L 320 (418)
T PF14727_consen 250 SSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TL 320 (418)
T ss_pred CCCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eE
Confidence 43334444443 667777775 4554433333211 232232322 22 248889999999999743 34
Q ss_pred eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.........-.+....|..-...|++-+.+|.+.+-=+-|.
T Consensus 321 ~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 321 VWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 433333221101122223333457888888999998777665
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.49 Score=45.53 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=106.2
Q ss_pred CCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe
Q 001190 842 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1128)
Q Consensus 842 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 918 (1128)
||.++.+.+ ...|++||+.+++.+.+-.-....+..=-...-+..+.+..-.+|.-.++|.++.+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 555665554 356999999999887765433222221111111334455566788899999999888776652 3444
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 998 (1128)
++++- |++-|..++...++..-|.++........+. -| |.++.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT----------------~~-------------------g~pv~ 176 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT----------------DD-------------------GVPVS 176 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE----------------EC-------------------Ceecc
Confidence 55543 5555666655566776666654332222111 11 11211
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+ +.+.|- ||...|-.=.+..|..-|.++|+++..+....-....-....+..-...+++.|+.+++++
T Consensus 177 ~L----------NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 177 KL----------NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred cc----------cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 11 122221 4555554445566777788888888877744333322222233344578999997667777
Q ss_pred EEE
Q 001190 1079 IGL 1081 (1128)
Q Consensus 1079 s~~ 1081 (1128)
+|-
T Consensus 246 TGK 248 (262)
T COG3823 246 TGK 248 (262)
T ss_pred ecC
Confidence 763
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.023 Score=67.32 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=70.8
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~ 438 (1128)
+++.|+..|.|-..|+.+.=... ..-..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~------------------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL------------------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh------------------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 57888899999998886531100 001224679999999999999999999999999999999
Q ss_pred CcceeceeecccccceeE---EEEecCCCeEEEEEecCCCeEEEEe
Q 001190 439 NDLRQHSQIDAHVGAVND---LAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 439 ~~~~~~~~~~~h~~~v~~---l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.++. +..|..+.++ +.+..++. .++++...|. +|.
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 88775 4445444444 44455555 6777776665 676
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.92 E-value=3.9 Score=45.83 Aligned_cols=279 Identities=13% Similarity=0.145 Sum_probs=145.6
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-----CCCeEEEEe
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSAT 850 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~~ 850 (1128)
...+++|+..|.+++|+-......+.. .++.. ....+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~-----~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLET-----QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEE-----ecCCcEEEEEeccccCCCCcceEEEec
Confidence 357888999999999974322221110 01111 1345555554422 334566656
Q ss_pred CCeEEEEECCC--ce-------EEEEeeCCCC--CeeEEEEcCC----CCCEEEEEeCCCcEEEEecccceeeecccccc
Q 001190 851 GGKISLFNMMT--FK-------VMTTFMSPPP--ASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 851 dg~i~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
-.++.||.+.. |. .+..+..|.- ....+++-|. +..++++-+.||.+.+|+-+.-.....+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77777887621 11 1222222322 2223333331 246888999999999999776544444433 1
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc------------------cceeEEe-ecCCCCCCCccEEEEcCCCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK------------------RKSVTIH-IPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~------------------~~~~~~~-~~~~~~~~~v~~v~~s~d~~ 976 (1128)
---..+.+.+....+++++.+..+.-|....-.. ....+.. ..-+...-.+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 1123467888888899998888888887632000 0000000 00010001222333344444
Q ss_pred EEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEee----CCC---EEEEEecCCcEEEEecCCCceEEEeCCCC
Q 001190 977 RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----NSQ---LVFATFCDGNIGVFDADTLRLRCYIAPST 1049 (1128)
Q Consensus 977 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~----dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1049 (1128)
.+++-.+..+.+.+. +|......+. + ..+.....|.. ++. .+++++.++.+.||.=.+..--+.+.
T Consensus 255 ~IvvLger~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred eEEEEecceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 555556666776665 3433322222 1 12222222322 322 47788899999999755433333332
Q ss_pred CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1050 YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
..++.+....|.. -.++|++-+.+|.+.+-=+-+
T Consensus 328 ---------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 328 ---------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ---------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCC
Confidence 2333333333333 478999999999998764444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.82 E-value=2 Score=52.47 Aligned_cols=240 Identities=11% Similarity=0.033 Sum_probs=122.3
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC--------eeEEEEcC---------------CCCCEEEEEeCCCcEE
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGTEDSTIH 898 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~l~~s~---------------~d~~~lasg~~dg~v~ 898 (1128)
++.++++..++.|.-.|..+|+.+-++...... ...+++.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999988776532211 12233321 0234677888999999
Q ss_pred EEecccceeeecccccccCee-------------EEEEcC--CCCEEEEEcC----------CCcEEEEECCCCccccee
Q 001190 899 IYNVRVDEVKSKLKGHQKRIT-------------GLAFST--SLNILVSSGA----------DAQLCVWSIDTWEKRKSV 953 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--d~~~l~s~~~----------Dg~i~iwd~~~~~~~~~~ 953 (1128)
-.|.++|+....+.. .+.|. .+.-+| .+..++.++. +|.|+-+|+.+|+.+-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998866532 12110 011111 1234555532 688999999999987665
Q ss_pred EEeecCCCCCCCccEEEEcCCCCEEEEEecC--eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 954 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 954 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
........ .. -+++.....+..+ ...-||.+.+....-.-. . +..+....+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn----~----~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN----Q----TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeCCC----c----cccccCCccccCcccccceE
Confidence 43211110 00 0122221111111 122333332222110000 0 00010011101111235668
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC---EEEEEECCCcEEEEcCCCCCCCcccC
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN---QFAIGLTDGSVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~l~s~~~dg~i~iWd~~~~~~~w~~~ 1101 (1128)
.-.|++||+.+..++... .-.....-...+.-+.+...+++ .++.++.+|.+.+.|..+|+..|...
T Consensus 417 vALD~~TGk~~W~~Q~~~---hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 417 VALDATTGKERWVFQTVH---HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEeCCCCceEEEecccC---CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 888999999988777311 00011111111111222221342 79999999999999999999999853
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.1 Score=62.08 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
.+..++.|+..|.+-..|+.+. ++....=..-.++|++++|+.||. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999988888764 221111223467999999999999 889999999999999 88899999988888
Q ss_pred CeEEEeccC-CCCccEEEEEeccCcEEEEec
Q 001190 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1128)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~ 525 (1128)
+.+++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 234456777777776 5654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.77 Score=54.35 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=117.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC------CeEEEEe-cC
Q 001190 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (1128)
Q Consensus 417 dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d------~~i~vWd-~~ 483 (1128)
.+..++.||.+ ..+..||..+++-.. ...+. +...-.++++. ++. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCCC
Confidence 34556666655 357888888764322 11222 22234445554 345 67888888 3677888 55
Q ss_pred CCeEE--EecCCCCCeEEEeccCCCCccEEEEEeccCc-----EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 484 GRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 484 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
++-.. .+...........+ +|.+.++|+.||. |-.||..+.+=...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 54322 11111111111121 5678888998864 5667655433222221122112222233466666777
Q ss_pred eeccCCC--ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC-----cEEEEECCCCeeeEEEecCCCC
Q 001190 557 GTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 557 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
|.+...+ ..+..||..+.+-...-+-.....-..++ .-++...+.||.|+ .|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 6543322 57888888876543322221111111122 22456666677665 3778888887765543222222
Q ss_pred CCcceEEEcCCCCEEEEEEcCCc-----EEEEEccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNG-----FKILANAI 660 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~-----i~iw~~~~ 660 (1128)
..+..+.+ ++...++|+.||. |..||..+
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 12222222 6677788877654 44555444
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.74 E-value=2.1 Score=47.02 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=88.1
Q ss_pred CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCEEEEEe--C----C
Q 001190 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1128)
Q Consensus 355 dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~--~----d 427 (1128)
+.++|++-|-.++.|.|.|+.+.-..- +-.|+.+.. .+.. .--..-..+-.-|+|+.++++- . -
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 345455555578899999987532110 001111100 0000 0001122233346888888762 2 2
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--------------------CCeEEEEe-cCCCe
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--------------------DKLIKVWE-LSGRK 486 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--------------------d~~i~vWd-~~g~~ 486 (1128)
|.+.+.|-++.+.......-.+...--+++-|.|..+ .++|... ..++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211112223345566666655 5666542 36899999 88888
Q ss_pred EEEecCCC--CCeEEEeccCCCCccEEEEEe-ccCcEEEEec-CCCC----ceeeecCC-----------------CCeE
Q 001190 487 LFNFEGHE--APVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1128)
Q Consensus 487 ~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~-~~~~----~~~~~~~~-----------------~~~i 541 (1128)
++++.--. .....+.|..+++..+-++++ ....|..|-- +.+. ....+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 234567776666555544443 3344444422 2111 11111110 2347
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+.+.+|.|.++|..+.. ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998886 6899999999864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.029 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCce
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~ 379 (1128)
....|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 345799999999998 8999999999999998 4543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.89 Score=46.66 Aligned_cols=171 Identities=8% Similarity=0.092 Sum_probs=115.0
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~ 989 (1128)
+.+-...|.++.|+|+.+.|++......-.||=-..|+.+..+++... .-.-.+.+..+|++.++-. ++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 445556699999999999999998888888887788888887776642 3345688888888888764 7888888
Q ss_pred ecCCccccccccc-----C-CCC-CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCc-
Q 001190 990 DASKMERIRQWTP-----Q-DAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT- 1061 (1128)
Q Consensus 990 d~~~~~~~~~~~~-----~-~~h-~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 1061 (1128)
.+..+..+..... . ..+ +...-.++|+|.++.|+.+-+-.-+.||....+..-...... ..+...
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-------~~~~~~~ 228 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-------LDPTADR 228 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc-------cCccccc
Confidence 8776533222111 1 111 567789999999999999888888888877633211111100 001111
Q ss_pred ----cceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1062 ----VYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1062 ----~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.-+.++.|++..+.+++-+..++.+.--|...
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 12456788887778888887777777666543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.042 Score=39.51 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=29.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~ 439 (1128)
....|.+++|+|...+||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 444
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.8 Score=45.92 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=107.7
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccC--CCCccE--EEEEec-c---CcEEEEecCCCCceee-ecC-
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTAI-D---GKIKAWLYDTMGSRVD-YDA- 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~~-d---g~i~~wd~~~~~~~~~-~~~- 536 (1128)
+++....++-+.+||..|+.++.+. .++++.+.+.. .-+|+. |+.++. + .+|++|.++....... +..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777788889999999999998885 34455443211 112222 344443 2 4699998875433332 211
Q ss_pred ------CCCeEEEEEE--cC-CCCeEEEeeeccCCCceEEEEeCC---CC----ceeeEeccccCCceeEEEEeCCCCEE
Q 001190 537 ------PGHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 537 ------~~~~i~~~~~--s~-~g~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
....++.+|+ ++ +|.+.+.... .++.+..|.+. .+ +++++|.... .+..|.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1124667776 33 4665555543 46767766553 33 4677777654 57778888888899
Q ss_pred EEEECCCcEEEEECCC-----CeeeEEEecCCCCCCcceEEEc--CCCC-EEEEEE-cCCcEEEEEcccC
Q 001190 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFS--KEGN-LLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--p~~~-~l~~~~-~dg~i~iw~~~~~ 661 (1128)
+.+-++--|.-|+.+. ++.+.......-...|..+++- .++. +|++.+ .+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999888888762 2223233332334467777764 3332 444444 4778999997653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.7 Score=50.15 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=94.6
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE-------------EEeccCCCCccEEEEEec----------cCcEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~~ 522 (1128)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577788899999999 99998876632 22111 000001001235666643 688999
Q ss_pred EecCCCCceeeecCCC---------C--------eE-EEEEEcCCCCeEEEeeec--------------cCCCceEEEEe
Q 001190 523 WLYDTMGSRVDYDAPG---------H--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWN 570 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~~---------~--------~i-~~~~~s~~g~~l~~~~~~--------------~~~~~~i~~wd 570 (1128)
+|.++++....+.... + .+ ..++++++...++....+ ..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999888765310 0 11 234555555555443210 01235677788
Q ss_pred CCCCceeeEecc-ccC-------CceeEEEEeC-CCC---EEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 571 ESEGTIKRTYAG-FRK-------KSNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 571 ~~~~~~~~~~~~-~~~-------~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.++|+.+-.++. |++ .....+.+.. +|+ .++.++.+|.++++|.++|+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 899998888775 321 0011122333 443 78888899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.63 Score=55.24 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=95.1
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEecccc-
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVD- 905 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~- 905 (1128)
-++.+++.|+ + ..+..||..+.+-.. .+....... +++.. ++++.+.|+.++ ++..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3667767665 3 237788887664321 111111112 22222 788888898764 4888998765
Q ss_pred -eeeecccccccCeeEEEEcCCCCEEEEEcCCC-----------------------cEEEEECCCCcccceeEEeecCCC
Q 001190 906 -EVKSKLKGHQKRITGLAFSTSLNILVSSGADA-----------------------QLCVWSIDTWEKRKSVTIHIPAGK 961 (1128)
Q Consensus 906 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 961 (1128)
..+..+.........++ -+|++.+.||.++ .+..||..+.+=....+.. ..
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~- 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TG- 453 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cc-
Confidence 23333322212222222 3678888887653 3667777664321111110 00
Q ss_pred CCCCccEEEEcCCCCEEEEEe-c------CeEEEEecCC-cccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCC--
Q 001190 962 TPTGDTRVQFNADQVRMLVVH-E------TQLAIYDASK-MERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDG-- 1029 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~-d------~~i~v~d~~~-~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-- 1029 (1128)
..-.+++ .-+|+..++|+ + ..+..||..+ .+-. ..+... ......+ .-+|++.++|+.||
T Consensus 454 --r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~--~~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 454 --TIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTI--LHDNTIMMLHCYESYM 525 (557)
T ss_pred --cccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeE--EECCEEEEEeeeccee
Confidence 1111222 23455555543 2 2467899887 4332 222211 1222222 23788888999888
Q ss_pred cEEEEecCCCce
Q 001190 1030 NIGVFDADTLRL 1041 (1128)
Q Consensus 1030 ~i~vwd~~~~~~ 1041 (1128)
.+..||..+.+-
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 788888887664
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=48.19 Aligned_cols=135 Identities=11% Similarity=0.191 Sum_probs=87.7
Q ss_pred cccCCCCCcceEEeec--CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~--h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
-|.+......+...+. .+++|.++.||+|.+ ++|+--.+.+|.+++....+...... ...+.
T Consensus 47 gvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~ 110 (657)
T KOG2377|consen 47 GVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKT 110 (657)
T ss_pred EEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhcc
Confidence 3444433334444443 677999999999998 88999999999999985433221100 01222
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
.+..|....|+.. .-+|.....| +.+|.+...+ +..+..+.|...|.-..|.++....+|+|+-..+++.=+.
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 3456889999866 6777776666 7788776533 2222456789999999999999864455543444444444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.053 Score=52.98 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=67.2
Q ss_pred CeEEEE-eCCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cCeeE
Q 001190 844 SYVMSA-TGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITG 920 (1128)
Q Consensus 844 ~~la~~-~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~ 920 (1128)
.-+++| ++|.|.+|...-.-... .+..-...|-+..-.-.++.+..+++.||.|+.|++.-++.+...-.|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 344455 48999999876221111 1111122233332222355688999999999999999998888887787 56666
Q ss_pred EEEcCCCCEEEEE--cCCCcEEEEECCC
Q 001190 921 LAFSTSLNILVSS--GADAQLCVWSIDT 946 (1128)
Q Consensus 921 l~~s~d~~~l~s~--~~Dg~i~iwd~~~ 946 (1128)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777776 7777777777765
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.063 Score=52.46 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=59.2
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
|..-+.||.|+-+++..-+.-..... .+ ... ...-.-+..+++ +.++.|++|...-........... ..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~----~~--~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~--~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER----FI--DEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG--EE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh----hh--hcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcc--cc
Confidence 44456788888877765321100000 00 001 111122233444 469999999987433332222211 23
Q ss_pred CeEEE-EEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1009 PISCA-VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1009 ~v~~l-~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|.++ .-..++.+..++..||.|+-|+++-++.+....
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 33333 233356688899999999999999888877766
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.24 Score=53.09 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=100.1
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEE-EEee-CCCC----Cee-EEEEcCCCCCEEEEEeCCCcEEEE-e
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM-TTFM-SPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~-~~~~-~~~~----~v~-~l~~s~~d~~~lasg~~dg~v~iw-d 901 (1128)
....+..+-..|||+.+..-+..++.++++.+.... +++- ...+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456688889999999999888888999988754331 1111 1111 233 233333 67778889999998877 4
Q ss_pred cccc-e----eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 902 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 902 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..-..+.. ....-+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-------~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-------QAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-------cCcceeeeCcccc
Confidence 4322 1 12222222233444433334556777788888887765443322111111 4566789999999
Q ss_pred EEEEEecCeEEEEecCCcccc
Q 001190 977 RMLVVHETQLAIYDASKMERI 997 (1128)
Q Consensus 977 ~l~~~~d~~i~v~d~~~~~~~ 997 (1128)
++++-+.++++++.+++...-
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hheeecCCceEEEEecCCCCC
Confidence 999999999999998866543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.95 E-value=3.4 Score=40.81 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=77.8
Q ss_pred ccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC--------CCeEEEeccCCCCccEEEEEeccCcEE
Q 001190 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE--------APVYSICPHHKENIQFIFSTAIDGKIK 521 (1128)
Q Consensus 451 ~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1128)
..+.++-..+|+|+ +.+-.-.|-. -+.. ..|.+-.-+.+|. +--+.++|..+ .-.+.++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 45667778899998 4322111211 1222 2222222233332 22245666532 224455566777888
Q ss_pred EEecCCCCc-------eeeecC----CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeE
Q 001190 522 AWLYDTMGS-------RVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 522 ~wd~~~~~~-------~~~~~~----~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
-||.+-... ...+.. .....-.+++..+|.+.+++. ..++|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~----ng~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF----NGGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe----cCcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 888543222 111211 111233455667787777766 378899999999999999988865 8999
Q ss_pred EEEeCC
Q 001190 591 VQFDTT 596 (1128)
Q Consensus 591 ~~~~~~ 596 (1128)
+||...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999744
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.71 Score=55.66 Aligned_cols=143 Identities=8% Similarity=0.086 Sum_probs=89.9
Q ss_pred CeeEEEEcCCCCEEEE--EcCCCcEEEEECCCCcccc---e--eEEeecCCCCCCCccEEEEcCCCCEE--EEEecCeEE
Q 001190 917 RITGLAFSTSLNILVS--SGADAQLCVWSIDTWEKRK---S--VTIHIPAGKTPTGDTRVQFNADQVRM--LVVHETQLA 987 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s--~~~Dg~i~iwd~~~~~~~~---~--~~~~~~~~~~~~~v~~v~~s~d~~~l--~~~~d~~i~ 987 (1128)
+|..+...+|+...+. .+.+-.|..||+.+-..-. . +..+...........++.|.|.-... +...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4566677778764443 3445578999997643222 1 11111111122455677787764333 334688888
Q ss_pred EEecCCccccccc-ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 988 IYDASKMERIRQW-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 988 v~d~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
+..+........- .. ....++++|||.|+.++.|...|++.-|.. +++.+..+..+... ...+|++
T Consensus 182 V~~~~~~~~~v~s~p~----t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~--------e~yrvl~ 248 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPV----TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVE--------ENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhcccCc----ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcC--------CCcceeE
Confidence 8887654433322 22 677899999999999999999999998875 56665655533322 2467899
Q ss_pred EEEecC
Q 001190 1067 VAAHPL 1072 (1128)
Q Consensus 1067 ~~~~p~ 1072 (1128)
|.|...
T Consensus 249 v~Wl~t 254 (1405)
T KOG3630|consen 249 VTWLST 254 (1405)
T ss_pred EEEecc
Confidence 999875
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.62 Score=52.32 Aligned_cols=156 Identities=12% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCeeEEEEcCCCCCEEEEEe--CCCcEEEEecccceeeecccccccCeeEEEEcCCC----CEEEEEcCCCcEEEEECCC
Q 001190 873 PASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL----NILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~----~~l~s~~~Dg~i~iwd~~~ 946 (1128)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|-+ ..|+..-..+.|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3678889974 444444432 333333321 2334344 459999999853 2455566778899999862
Q ss_pred -----CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE-EEEecCCcccccccccCCCCCCCeEEEEEeeCCC
Q 001190 947 -----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 947 -----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
++.+......+.+ ..+.-...+.|+|....|++-....+ .++++......-...... .+.|.|.+|..||+
T Consensus 92 s~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQ 168 (671)
T ss_pred CccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCC
Confidence 2222222222211 11234567889999998888543333 445554333222222211 78899999999999
Q ss_pred EEEEEe-cCCcEEEEecCCC
Q 001190 1021 LVFATF-CDGNIGVFDADTL 1039 (1128)
Q Consensus 1021 ~l~t~~-~dg~i~vwd~~~~ 1039 (1128)
.|+++- ..=.-+|||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 887654 3445789986544
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=8.5 Score=43.46 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-...|.++.|...|.+ -+|+.|| +..||..+++.+....- .-..+|..+.-+-.|+ |-
T Consensus 163 ~d~~V~aLv~D~~g~l--WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGRL--WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCcE--EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-EE
Confidence 4557899999999973 4455665 56778777776542110 0113455555554554 45
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCC--CCeEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVYS 499 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~--~~v~~ 499 (1128)
.|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|-.+.=-..+..... .+-|. ..|.+
T Consensus 221 VGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vns 294 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNS 294 (671)
T ss_pred EEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccccc
Confidence 576666 677776652211100 001223344444434443 4445444433221122222111 12221 23444
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC--CCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
+.. +.+| -|.+++.+|.+++=+-+-..........+..+...+.+| .+..+-... ..+.+.+-+-.+|..+
T Consensus 295 L~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v 367 (671)
T COG3292 295 LWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELV 367 (671)
T ss_pred eee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEE
Confidence 433 3343 466777777665533221111111111122222222222 111111111 1234555556667766
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
+......+..++.+++.. +..+-.|+...-+..|+.++ +........ -..++|..+.-.|+++ |..|+.+|.++.
T Consensus 368 ~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 368 RSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred EEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec-
Confidence 665555555677777776 44566666665566677666 332222222 2244678888888887 778888887654
Q ss_pred EcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
+.+.+ +....+.........+.+..+.+.|+|++-+
T Consensus 444 ~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 22221 1111111111111223366677777776643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=7.4 Score=41.60 Aligned_cols=233 Identities=10% Similarity=0.010 Sum_probs=109.4
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee---CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-e
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-K 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~ 908 (1128)
...++.|..+ ..+++|..+ +.+...+.|+.-..+. .-.+....+.... ++..++ .+..|.|+.=. +.|+- .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEES-STTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 3667777543 445555555 3344444444332221 1122333333333 333333 34445443321 22221 1
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 988 (1128)
.....-.+.+..+..++||++++.+..-....-||-.... ..+... .....+..|.|+|++.+.+++..+.|+.
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r---~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNR---NSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEcc---CccceehhceecCCCCEEEEeCCcEEEE
Confidence 1223344778899999999999888766666677654311 111111 1126789999999999888888888888
Q ss_pred Ee-cCCcccccc-cccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 989 YD-ASKMERIRQ-WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 989 ~d-~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
=+ ....+.... ..........+..++|.++++..++|+ .|.+ +.....|+.-.+.... ..-+.....
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~---------~~~~~n~~~ 280 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG---------ENVPSNLYR 280 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG---------TTSSS---E
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc---------cCCCCceEE
Confidence 77 222222111 111111156689999999988777665 4543 3355566655554411 112234577
Q ss_pred EEEecCCCCEEEEEECCCcEEEE
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
|.|.+. +.-++-+.+|.|--|
T Consensus 281 i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEET--TEEEEE-STTEEEEE
T ss_pred EEEcCC--CceEEECCCcEEEEe
Confidence 888763 566667778887544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.2 Score=46.05 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=113.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
-|...+ ..........-+++-+|..+|....=++ +..-.|+|++.. |..+.. ++-.|.
T Consensus 27 ~W~l~d-l~~~~fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~ 84 (829)
T KOG2280|consen 27 KWPLTD-LYYVYFACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG 84 (829)
T ss_pred CCcccc-cceeEEEecccCCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC
Confidence 455532 2333333444556667777775321122 344568899864 555432 122233
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
.+..+.||.+..+| ....+|+++||++-... +... .-.......|..+.|...|= .+.+. +|.+.+-. .+.
T Consensus 85 -~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 85 -ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE 157 (829)
T ss_pred -CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc
Confidence 88899999776555 56799999999986532 2211 01123344577777777663 33333 45555444 333
Q ss_pred CeEEEecC---CCCCeEEEeccCC-CCccEEEEEe-ccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 485 RKLFNFEG---HEAPVYSICPHHK-ENIQFIFSTA-IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 485 ~~~~~~~~---h~~~v~~~~~~~~-~~~~~l~s~~-~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
..+.++.. ...+-.|-..... .....++-.. ..+ ..++..+.... ...+......+..+.+||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 23333322 1111111111111 0111111111 011 01121122111 1122223456888999999999988763
Q ss_pred ccCCCceEEEEeCCCCceeeEeccc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
.|.|.+-+.+..+....+...
T Consensus 237 ----~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 237 ----TGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred ----CCcEEEEecchhhhhhccCCC
Confidence 888888888877777766643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=10 Score=41.69 Aligned_cols=279 Identities=11% Similarity=0.071 Sum_probs=131.3
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-...+.+|+|..+.+ .+|+|. +| .||...++-.- |...... +......+.++.|.++ ..++
T Consensus 44 ~~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~ 104 (334)
T PRK13684 44 TEANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWI 104 (334)
T ss_pred CCCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEE
Confidence 355789999986555 667774 44 34555443221 1110000 1112334778888754 3344
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~ 501 (1128)
+ +..+.|.. .-+.|+.-.....-....+....+....++. .++. +..|.|..=+..|+.=..+. .-.+.+.++.
T Consensus 105 ~-G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 105 V-GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred e-CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEE
Confidence 4 34443222 2333433332111000111122232222333 2333 33454433323343322222 2245677888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+.+ ++.++ ..+..|.+.. ..+....... .......++++.+.++++.++++. .+.+++=....|..-..
T Consensus 180 ~~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 755 44444 4444565432 1122222221 223345788999999998877653 45454322333332111
Q ss_pred eccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec-CCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
.... ....+..+.+.+++. ++.++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| ..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEE
Confidence 1111 112356678888765 55566677665 34455554444332 1112246777777776666554 5677766
Q ss_pred EE
Q 001190 656 LA 657 (1128)
Q Consensus 656 w~ 657 (1128)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 64
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.15 E-value=11 Score=42.26 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=78.8
Q ss_pred CCeeEEEeccCCCeEEEEe------------C-CeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 832 EAVPCIALSKNDSYVMSAT------------G-GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~------------d-g~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999999887742 2 3677776542 33 2234443344568899988 77 444 3433
Q ss_pred CcEEEE-eccc-------ce-eeecccc----cccCeeEEEEcCCCCEEEEEcCC-------------------CcEEEE
Q 001190 895 STIHIY-NVRV-------DE-VKSKLKG----HQKRITGLAFSTSLNILVSSGAD-------------------AQLCVW 942 (1128)
Q Consensus 895 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~~~D-------------------g~i~iw 942 (1128)
.|..| |... .+ .+..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34434 4321 11 1222322 23447789999999977765521 334444
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
+.++++.. .. ..+ ......++|+++|.++++-
T Consensus 170 ~pdg~~~e----~~-a~G--~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLR----VV-AHG--FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEE----EE-ecC--cCCCccceECCCCCEEEEc
Confidence 44443311 11 111 1445789999999987763
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.04 Score=63.80 Aligned_cols=199 Identities=10% Similarity=0.138 Sum_probs=113.0
Q ss_pred CCCCeeEEEeccCC-CeEEEEeCCeEEEEECC--CceEEEEee-----CCCCCeeEEEEcCC--CCCEEEEEeCCCcEEE
Q 001190 830 LEEAVPCIALSKND-SYVMSATGGKISLFNMM--TFKVMTTFM-----SPPPASTFLAFHPQ--DNNIIAIGTEDSTIHI 899 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg-~~la~~~dg~i~vwd~~--~~~~~~~~~-----~~~~~v~~l~~s~~--d~~~lasg~~dg~v~i 899 (1128)
..+.+-.+.|.+.. ..+. -.-|.+.|||++ .|+....+. .....+.-+.|.|. +.-++..+..+++|++
T Consensus 131 f~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 56667677764321 1111 112678888875 343322221 11222333333331 4567778888899998
Q ss_pred EecccceeeecccccccCeeEEE-----------EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccE
Q 001190 900 YNVRVDEVKSKLKGHQKRITGLA-----------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 968 (1128)
Q Consensus 900 wd~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 968 (1128)
....+... ..+.+|+..++.++ .||||+.+|.++.||.+++|.+.-..+....+++....|...+..|
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC 288 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVC 288 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCcee
Confidence 77665433 55667887776654 5899999999999999999988654444455566666665433333
Q ss_pred EEEcCC-------CCEE--EEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCE------------EEEE
Q 001190 969 VQFNAD-------QVRM--LVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL------------VFAT 1025 (1128)
Q Consensus 969 v~~s~d-------~~~l--~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~t~ 1025 (1128)
.-|+.. +.+. +++. +..+++|.....++...+. ...|..+. -+||+. ++..
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHh
Confidence 334432 2222 2232 5678888877666652221 23333343 334431 2234
Q ss_pred ecCCcEEEEec
Q 001190 1026 FCDGNIGVFDA 1036 (1128)
Q Consensus 1026 ~~dg~i~vwd~ 1036 (1128)
+-++.|.+|.=
T Consensus 363 ~v~~~i~~~qn 373 (1283)
T KOG1916|consen 363 SVDGTIKIWQN 373 (1283)
T ss_pred hhHHHHHHhhc
Confidence 56778888853
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.6 Score=52.18 Aligned_cols=194 Identities=10% Similarity=0.108 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCC------cEEEEecccceeee--cccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCccc
Q 001190 884 DNNIIAIGTEDS------TIHIYNVRVDEVKS--KLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKR 950 (1128)
Q Consensus 884 d~~~lasg~~dg------~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~ 950 (1128)
++.+++.|+.++ .+..||..+.+-.. .+.........+. -+++.++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556666666442 46778877654322 1211111122222 367777888865 34677887765421
Q ss_pred ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---c----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 951 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
...... ....-..++ .-+++.++.|+ + ..+..||..+.+-...-.... ......+...++++.+
T Consensus 372 ~~~~lp-----~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLI-----FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI---SHYGGCAIYHDGKIYV 442 (534)
T ss_pred eCCCcC-----cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc---cccCceEEEECCEEEE
Confidence 111111 001111222 23455555543 1 458889987654332211111 1111122334677666
Q ss_pred EEecC--------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEc
Q 001190 1024 ATFCD--------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVME 1090 (1128)
Q Consensus 1024 t~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd 1090 (1128)
.|+.+ ..+.+||..+++-... .. .+.. +... ..+.+ ++.+++.||.+ +.+.++|
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~---~~~~---r~~~---~~~~~---~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTEL-SS---LNFP---RINA---SLCIF---NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeC-CC---CCcc---cccc---eEEEE---CCEEEEEcCCcCCcccceeEEEe
Confidence 77643 2388899888754332 11 1111 1111 11222 46778888765 4688888
Q ss_pred CCCCCCCcccCCC
Q 001190 1091 PSESEGKWGVSPP 1103 (1128)
Q Consensus 1091 ~~~~~~~w~~~~p 1103 (1128)
+.+.+ |...++
T Consensus 510 ~~~~~--W~~~~~ 520 (534)
T PHA03098 510 DKTNT--WTLFCK 520 (534)
T ss_pred CCCCE--EEecCC
Confidence 88765 976543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=52.68 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=91.7
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEecccce
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~ 906 (1128)
.++.+++.|+ + ..+..||..+.+-...-.-. ......+.+ ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666664 2 24778888776543211111 111222222 67788888865 347778877653
Q ss_pred e--eecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 907 V--KSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 907 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
- ...+....... ++ ..-++++.+.||.+ ..+..||..+++-...... ... ....++ ..-+++.+
T Consensus 370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~---r~~~~~-~~~~~~iy 441 (534)
T PHA03098 370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PIS---HYGGCA-IYHDGKIY 441 (534)
T ss_pred eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Ccc---ccCceE-EEECCEEE
Confidence 2 22222111111 12 22356777777732 3578888876542111111 101 111122 22345555
Q ss_pred EEEe-c--------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCce
Q 001190 979 LVVH-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRL 1041 (1128)
Q Consensus 979 ~~~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~ 1041 (1128)
+.|+ . ..+.+||..+.+-...-..... ......+ ..++++++.|+.+ +.|.+||.++.+-
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5542 1 2388899887654322111110 1111122 2377777777754 4688899887654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.85 E-value=2 Score=50.34 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-ccccCeeEEEEc--CCCCEEEEEcCCCcEEEEECC--
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSID-- 945 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~~~Dg~i~iwd~~-- 945 (1128)
.....+-+.-|. -++..++.+...++.|||...+....+-. ...+.|.++.|. |||+.+++.|-.+.|.++.-.
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 55555555556689999999886432221 346889999885 789999999999999998542
Q ss_pred ---C-CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEec
Q 001190 946 ---T-WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1128)
Q Consensus 946 ---~-~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~ 991 (1128)
. +..-..+.......+++.++....|.++|.+++ +.++++.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 1 111111111112334446788999999997654 45677888774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=9.3 Score=39.58 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=104.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|-...|.++.|+|+.+.|.+......-.||=-..|+.++.+ .+.+ -..-..+++..+|+ ++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g-~~DpE~Ieyig~n~--fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTG-FSDPETIEYIGGNQ--FVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccc-cCChhHeEEecCCE--EEEEehhcceEEEEE
Confidence 3444556999999999999999988888888877788877754 3444 33456788888888 788888888888887
Q ss_pred -cCCCeEE-------Eec--CC-CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CC-------CCe
Q 001190 482 -LSGRKLF-------NFE--GH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---AP-------GHW 540 (1128)
Q Consensus 482 -~~g~~~~-------~~~--~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~-------~~~ 540 (1128)
..+..+. .+. .+ ......++|.+ ..+.|+.+-+-.-+.+|.+.......... .+ -..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 3332211 111 12 44567889866 44678888887777777665332111111 11 124
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
+.++.|.+....+++-+. +.+.+.-.|..
T Consensus 235 vSgl~~~~~~~~LLVLS~---ESr~l~Evd~~ 263 (316)
T COG3204 235 VSGLEFNAITNSLLVLSD---ESRRLLEVDLS 263 (316)
T ss_pred cccceecCCCCcEEEEec---CCceEEEEecC
Confidence 677888876665555542 46666666654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.71 E-value=16 Score=44.34 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=55.8
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
..-.|..+.++++|++||..+...|.|..+... -....+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 445799999999999999988766776666421 11111222222222222211 11111
Q ss_pred ecccccccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCC
Q 001190 909 SKLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
...+...|..+.|+|. +..|+.-..|+++|+||+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 0123456778888876 467777788888888888653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.69 E-value=10 Score=39.56 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=127.3
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccC------ccccccccCCccccccCcceeeeeecccccccccCCCCcceecc
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1128)
-+.++++|.+.+.++....+...+||.+.. ..+.-.+............+.+.|.......+.....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------- 97 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------- 97 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-------
Confidence 478999999988888888889999998622 1111111111111112234455555444333221110
Q ss_pred cCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecC--cceEEEee
Q 001190 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG 783 (1128)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~ 783 (1128)
.....++.++.||+|.-|.............+.+.. .....-...+++... +.+|..+.
T Consensus 98 ------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 98 ------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred ------------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEec
Confidence 011235677888999999853221100011122211 111222345666543 45555443
Q ss_pred -ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCC
Q 001190 784 -SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMT 861 (1128)
Q Consensus 784 -~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~ 861 (1128)
.+++|.++|-.-......+...-... ..+..-. .+..+...--|+-..-.++++.=+.+ .-|.|-+||+ .
T Consensus 159 F~~g~IDVFd~~f~~~~~~g~F~DP~i------PagyAPF-nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~ 230 (336)
T TIGR03118 159 FRQGRIDVFKGSFRPPPLPGSFIDPAL------PAGYAPF-NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-N 230 (336)
T ss_pred cCCCceEEecCccccccCCCCccCCCC------CCCCCCc-ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-C
Confidence 47888888744332211111110000 0000000 00000000011111112222221122 2467999998 4
Q ss_pred ceEEEEeeC--CCCCeeEEEEcC-----CCCCEEEEEeCCCcEEEEecccceeeeccccccc------CeeEEEEcC
Q 001190 862 FKVMTTFMS--PPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------RITGLAFST 925 (1128)
Q Consensus 862 ~~~~~~~~~--~~~~v~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------~V~~l~~s~ 925 (1128)
|..++.+.. .-..-..|+..| -.+.+|+---.||+|..||..+++.+..+....+ ..+.|+|-.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677777642 223445666654 2567887777899999999999988877765433 456777754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.8 Score=48.99 Aligned_cols=183 Identities=11% Similarity=-0.008 Sum_probs=89.4
Q ss_pred CCCeEEEEe-C-----CeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCC--CcEEEEecccce--eee
Q 001190 842 NDSYVMSAT-G-----GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDE--VKS 909 (1128)
Q Consensus 842 dg~~la~~~-d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~--~~~ 909 (1128)
++.++++|+ + ..+..||..+.+-.. .+....... +++ .- ++.+.+.|+.+ ..+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 2 247778887655332 221111112 222 23 77888888864 357888876542 223
Q ss_pred cccccccCeeEEEEcCCCCEEEEEcCCC---cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSSGADA---QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 986 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~~~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i 986 (1128)
.+....... ....-+|+..+.||.++ .+..||..+.+=.. .. .......-. .+..-+|+..++| |.+
T Consensus 348 ~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~--~m~~~r~~~-~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GP--STYYPHYKS-CALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CC--CCCCccccc-eEEEECCEEEEEC--Cce
Confidence 332111111 12233678888887654 46778876643211 11 000001111 2223455555555 457
Q ss_pred EEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCc
Q 001190 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLR 1040 (1128)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~ 1040 (1128)
.+||..+.+-...-..... ...... ..-+|+..++|+.+ ..|.+||.++++
T Consensus 418 e~ydp~~~~W~~~~~m~~~-r~~~~~--~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-RDNPEL--IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-ccccEE--EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7888876543322111110 111222 23477877778754 357777777654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.9 Score=46.03 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=107.7
Q ss_pred EEEEeCCCcEEEEecccceeeeccccc--ccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 888 IAIGTEDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 888 lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+..+..+|.|.-.|..+++.+-....- ...+..-.+..+|+ ++.++.++.+..+|..+|+......... . ..
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~----~~ 144 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S----PY 144 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C----eE
Confidence 444567777777777777654322211 12222223333666 6668888889999998888766555442 0 01
Q ss_pred ccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec--CCcEEEEecCCCceEE
Q 001190 966 DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC--DGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~ 1043 (1128)
...-..-.++..++...++.+...+..+|...-.......-...+..-....++. ++.+.. ++.+.-.|+++|..+.
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEee
Confidence 1111222344333333567777777777766444322110011111111133444 444444 6678888999999888
Q ss_pred EeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCC
Q 001190 1044 YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p 1103 (1128)
.......................+. .+..+..++.+|.+...+..+++.+|....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7431111110000000011111111 1233477888888999999999999999876
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.8 Score=52.23 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCC----------C--ceEEEeCCCCCCCCcccCCCCccceEEEEEecC--
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADT----------L--RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-- 1072 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 1072 (1128)
...|..+.++++|++|+..|..| |.|-.+.. | +..|+.. ......+.......+.-+.|+|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~---~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTV---PVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEE---EechhhccCCCCceEEEEEEcCCCC
Confidence 56789999999999999888755 44444431 1 1122222 11111222355677899999996
Q ss_pred CCCEEEEEECCCcEEEEcCCCCCCCcccCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
++..|+.-..|+++|+||+.+.+.-|-..+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 257899999999999999998776665543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.1 Score=50.14 Aligned_cols=110 Identities=14% Similarity=0.181 Sum_probs=73.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-----
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD----- 526 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~----- 526 (1128)
..-+.-+.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++++.+++.+..+.|.++.-.
T Consensus 32 ~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444455 334444456899999 5555433222 35778999999999999999999999999998431
Q ss_pred CCCc----ee--eecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 527 TMGS----RV--DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 527 ~~~~----~~--~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.... .. .+.. ..++|....|.++|..++.++ +.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 11 1222 336899999999998887663 46788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=18 Score=40.54 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=85.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
...+..++ ++.+++.|..-..++-||--.. +.+ . ......++++.+.+++..++.+ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776654333333432111 111 1 2234568999999998887755 55654 444444432111
Q ss_pred eEEeecCC-CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 953 VTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 953 ~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
........ .....+..+.|.+++..++++..|.+.... ..|+.-........-......+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 01111111 111457889999999998888887665553 4444433322111115678899998887766655 68877
Q ss_pred EEE
Q 001190 1032 GVF 1034 (1128)
Q Consensus 1032 ~vw 1034 (1128)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.1 Score=49.34 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEe---------cCCCc--eEEEeCCCCCCCCcccCCCCccceEEEEEecCC--
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE-- 1073 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 1073 (1128)
.-.|..+..|+.|..++..+.+|.+.++= ++.|+ ..|+..+ .....+-.+....+.-.+|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~---i~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP---VAERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec---ccceeeccCCceeeeeccccCCccC
Confidence 55678888999999999999999776653 23342 2233221 11112222345567788999975
Q ss_pred CCEEEEEECCCcEEEEcCCCCCCCcccCCC-CCCCccCC
Q 001190 1074 PNQFAIGLTDGSVKVMEPSESEGKWGVSPP-VDNGILNS 1111 (1128)
Q Consensus 1074 ~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p-~~~~~~~~ 1111 (1128)
...|+.-+.|++||+|++++....|-..+| .-++..+|
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~S 218 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVS 218 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccce
Confidence 678888999999999999998877876533 34444443
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=92.79 E-value=14 Score=47.47 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|-..++.|.-+|+|.++ =. .|+.++.||....... .- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeE-Ee--ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceEe
Confidence 55557777777887743 22 6778888887654321 00 011234566666666777666
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe---cCCCe------EEEecCC
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRK------LFNFEGH 493 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd---~~g~~------~~~~~~h 493 (1128)
.++. .|-|+.++..-. ..-..|.+...+++|.- .+.++....++.+|+ ..+.. ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555543211 12345777888899984 467777777889998 22221 1223333
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.....+|.++. ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 3688899999887666543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=23 Score=40.31 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
-..+|..+.+.-.|.+. .|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+..|
T Consensus 163 ~d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 35688889998888544 577777 678888887766531 122336777777777776 66677554 56666555
Q ss_pred CeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCC--CCeEEEEEEcCCCCeEEE
Q 001190 485 RKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAP--GHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 485 ~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~--~~~i~~~~~s~~g~~l~~ 555 (1128)
....... -..+.|..+.- +.. ..+..|+..|..+. ........... ..+ -..|.++....+|..-+.
T Consensus 235 ~~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~ 306 (671)
T COG3292 235 WRASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG 306 (671)
T ss_pred ccccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence 3222211 12233444332 222 25666666665432 22222221111 111 124566666677765443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=9.5 Score=44.61 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=95.0
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec----ccccccCeeEEEEcCCCC
Q 001190 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~V~~l~~s~d~~ 928 (1128)
.|+||++ +|..+..+.-..+.+..+.|+. + ..|.+...||++++|++.... +.. +......|..+.|..+|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 3788887 4555555443444888999996 4 456677899999999986322 221 122233455555555664
Q ss_pred EEEEEcCCCcEE-EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEE--EEec--CeEEEEecCCccc-cccccc
Q 001190 929 ILVSSGADAQLC-VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML--VVHE--TQLAIYDASKMER-IRQWTP 1002 (1128)
Q Consensus 929 ~l~s~~~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~--~~~d--~~i~v~d~~~~~~-~~~~~~ 1002 (1128)
.+.+. +|.+. +-+...... ......+... ....+.+.-+++.... ..-+ -...++....+.. ...+..
T Consensus 141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~-~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNE-LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EEEec--CCcEEEEcCCCcchh---hhCCCCCCcc-CCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 44443 34333 333322111 0111101111 1112222222221111 1111 1112222222211 111111
Q ss_pred CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1003 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
. .+.+..++.||+.++|+.=...|.|.+-+++..+..+.+.
T Consensus 215 ~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 P---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred C---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 4678899999999999998899999999988888777776
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.18 E-value=17 Score=38.05 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=117.3
Q ss_pred ceeEEEEecCCCeEEEEEecCCCeEEEEecC-----CC---eEEEecC-----CCCCeEEEeccCCCC----------cc
Q 001190 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~-----g~---~~~~~~~-----h~~~v~~~~~~~~~~----------~~ 509 (1128)
.-+.|+|+|.+. +-++...-+...+||.. +. .+..+.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 67777778899999933 22 2333332 123456666643211 12
Q ss_pred EEEEEeccCcEEEEecCCCCc-----eeeecCC--CCeEEEEEEc--CCCCeEEEeeeccCCCceEEEEeCCCCceee--
Q 001190 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYS--ADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-- 578 (1128)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~--~~~i~~~~~s--~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 578 (1128)
.++.+++||+|.-|....... ...+... ..-...+++- ..+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367789999999997433222 2223211 2233445554 34667766654 47889999865333211
Q ss_pred Eecccc---C-CceeEEEE-----------eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC----
Q 001190 579 TYAGFR---K-KSNGVVQF-----------DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1128)
Q Consensus 579 ~~~~~~---~-~~v~~~~~-----------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---- 639 (1128)
.|.... + .+.....+ .++...=+.|-.-|.|-+||. .|+.++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 0 00111111 111111222334478999997 677788776666666667888866
Q ss_pred --CCCEEEEEEcCCcEEEEEcccCc
Q 001190 640 --EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 640 --~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+.+|+---.||+|..+|..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 46677776779999999998874
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.14 E-value=15 Score=37.48 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=142.1
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
....-..++-++||..-.++. .+.|--.|-.+|+....--+....-..+...| |+..-++-+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence 345566788899998888887 67788889999988766656566667788888 55544443322 4444454444321
Q ss_pred -ec--ccccccCeeEEEEcCCCCEEEEEcCC---------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 909 -SK--LKGHQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 909 -~~--l~~h~~~V~~l~~s~d~~~l~s~~~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
.. .+.-........|.++|.+.+++... +.|++|+.-.| .....|+..|||.
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdGs 201 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDGS 201 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCCc
Confidence 11 12223456778899999988887532 34555554432 4567789999998
Q ss_pred EEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcc
Q 001190 977 RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV 1055 (1128)
Q Consensus 977 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1055 (1128)
.-+++ .++.|...|..++.. ..+.........-..+.-+|.|+.-++....+.+..||..+..- .......
T Consensus 202 vwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW-~eypLPg------ 273 (353)
T COG4257 202 VWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW-IEYPLPG------ 273 (353)
T ss_pred EEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccc-eeeeCCC------
Confidence 77775 467777777766632 22222222133445555667788888877788888888776542 2222111
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
..-...++.... .+...++--..|.|.-+|..+....
T Consensus 274 ----s~arpys~rVD~-~grVW~sea~agai~rfdpeta~ft 310 (353)
T COG4257 274 ----SKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFT 310 (353)
T ss_pred ----CCCCcceeeecc-CCcEEeeccccCceeecCcccceEE
Confidence 111112222222 2444454555566776777666543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=24 Score=39.70 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=110.5
Q ss_pred eccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-
Q 001190 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ- 915 (1128)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 915 (1128)
..-||+.++...+|.|.-.|..+++.+.....-. ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666568888888888888665433221 2333333333 565 6678889989999988898887776554
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK 993 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~ 993 (1128)
-.+..-.+..++. +..++.|+.+.-.|..+|+.......... .. ..+..-....++..++... ++.+.-.++.+
T Consensus 143 ~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAP-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCc-cc--cccccCceeecceEEEecCCCcceEEEEEccC
Confidence 1222222333433 33333678888888887776544333211 00 0111111133344444333 44677777777
Q ss_pred cccccccccCCCC-CCCe------EEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 994 MERIRQWTPQDAL-SAPI------SCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 994 ~~~~~~~~~~~~h-~~~v------~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|...........- ...+ ..-..--++. ++.++.++.+...|..+|+.+.....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEec
Confidence 7665553211100 1111 1111111222 35667788899999999999888874
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.13 E-value=5.9 Score=49.39 Aligned_cols=150 Identities=11% Similarity=0.178 Sum_probs=97.5
Q ss_pred eCCCcEEEEecccceeeecccccccCeeEEEE--------cCCCCEEEEEcCCCcEEEEECCCCcccceeEE---eecCC
Q 001190 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF--------STSLNILVSSGADAQLCVWSIDTWEKRKSVTI---HIPAG 960 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~---~~~~~ 960 (1128)
+-|+.+.+|+.+++.....+.+-+..|..|.. .|.=++++..+.--.|.++-+.-.+....... ...-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998878888887777777754 33445566566666788776644332211111 00111
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCeEE--EEecCCc---c-c-------------ccc-cccCCCCCCCeEEEEEeeCCC
Q 001190 961 KTPTGDTRVQFNADQVRMLVVHETQLA--IYDASKM---E-R-------------IRQ-WTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 961 ~~~~~v~~v~~s~d~~~l~~~~d~~i~--v~d~~~~---~-~-------------~~~-~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
..+..+.++....+|+.+++|.||.++ +|...++ + + +.. +.....+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 223678888989999999999888554 2332221 1 0 001 111113467999999988888
Q ss_pred EEEEEecCCcEEEEecCC-Cce
Q 001190 1021 LVFATFCDGNIGVFDADT-LRL 1041 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~-~~~ 1041 (1128)
.+.+-++.|.|.+||+.. |..
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred eeeeeccCceEEEEEccCCCcc
Confidence 999999999999999987 443
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.047 Score=59.09 Aligned_cols=244 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
.....+.+.+..++.++.+..+..||-.. +.+. ....+.....+++..+|..+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~l----e~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVIL----ELNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceec----ccCCchhHhhhhhccccchh
Confidence 34456777777788888888888776321 1110 11245556678888888777
Q ss_pred EEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEc
Q 001190 847 MSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 847 a~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 924 (1128)
+... .+.+.+||+.+...-..-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 6554 68899999975432111111122222378999 88899999999999999988877666655599999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEE---EEcCCCCEEEEEecCeEEEE--ecC--Ccccc
Q 001190 925 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV---QFNADQVRMLVVHETQLAIY--DAS--KMERI 997 (1128)
Q Consensus 925 ~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v---~~s~d~~~l~~~~d~~i~v~--d~~--~~~~~ 997 (1128)
+.+ +.+.++.|..+.+-...+... ........... .....+ .|..-|..+...-.+.+.+. .+. .+..-
T Consensus 169 lEd-~vil~dcd~~L~v~~qegeta-~ltevggepdn--m~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVTTQEGETA-SLTEVGGEPDN--MDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred ccc-eeeecCcHHHHHHhhhcccee-eeeeccCccch--hhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 876 455566666554433222110 00001000000 000111 12233334433222222111 111 11111
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
..++.. .+.+.|+.|--||. |.-+..-|.|.+-.+.++++...+.
T Consensus 245 l~fq~~---~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 245 LQFQEK---YGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred eEeeec---CCceeEEEEecccc-ccccccceeEEEEeccchHHHHHHH
Confidence 123322 67788888888886 5567777788777787777655443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=91.97 E-value=21 Score=38.65 Aligned_cols=209 Identities=11% Similarity=-0.009 Sum_probs=102.3
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCe--EEEEECCCceEE---------------EEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
+...|+++...+..+.|++-+|.. ++++++...... ...-.+.......++.......++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888766 999998543320 111133333444444432223344455
Q ss_pred CCCcEEEEecccc----eeeecc---c-ccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCC--CcccceeEEeecCC
Q 001190 893 EDSTIHIYNVRVD----EVKSKL---K-GHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDT--WEKRKSVTIHIPAG 960 (1128)
Q Consensus 893 ~dg~v~iwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~--~~~~~~~~~~~~~~ 960 (1128)
...+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+...++++.. ..... ........
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-cccccccc
Confidence 5667777644322 111110 0 01123444443433 34566666542345555533 11000 00000000
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 961 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 961 ~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
........+..-+++.+|++-+ ....+.|.. | +..+.....- .....++++. ..||+.-. +..|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~-~~~v~Vn~~-G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYD-EFGVFVNLY-GKRRSRNPILHW--EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEEC-cEEEEEeCC-CCccccceEEEc--CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 0000233344444555555443 333344433 3 2222111111 4455677776 45666654 566999999999
Q ss_pred ceEEEeC
Q 001190 1040 RLRCYIA 1046 (1128)
Q Consensus 1040 ~~~~~~~ 1046 (1128)
+.+..+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9888776
|
Unpublished observations. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.85 E-value=4.3 Score=45.50 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=55.9
Q ss_pred CcEEEEEEeCCCCcEEEEee-----------ccC-eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
....+|+|.++|+ ++++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4578899999999 544421 223 677776543321111 111233333456889
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCC----cceec-eeecc----cccceeEEEEecCCCeEEEEEe
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~----~~~~~-~~~~~----h~~~v~~l~fs~d~~~~~l~s~ 471 (1128)
++.++| .++ +......++.|.+... ..+.+ ..+.. +......++|.|||.. ++..|
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecc
Confidence 999999 444 4444333333543211 11111 11222 2345788999999983 34334
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.9 Score=47.52 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.1
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCCCC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVD 1105 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p~~ 1105 (1128)
..+...+.++.+.+.++.+++++=.-..|...|..+++-+|...++..
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 345566889999996555455444444899999999999999998763
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.68 E-value=6.9 Score=35.40 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=72.5
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccce---eEEeecCCCCCCCccEEEEcC-----CCCEEEEEecCeEEEEecCC
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQFNA-----DQVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~~d~~i~v~d~~~ 993 (1128)
.|.....-|+.++.-|.|.|.+......... ..+..... ...+++++--+ +...|++++...+..||+.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3444445677777778888887664322111 00000000 14455554433 45688889999999999998
Q ss_pred cccccccccCCCCCCCeEEEEEee----CCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 994 MERIRQWTPQDALSAPISCAVYSC----NSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
...+..... ...|.++.+-. +..++++| .+..|.=||.+-.+...+..
T Consensus 83 N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 83 NSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CchhhhhhC----ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEec
Confidence 777665555 46677777643 34455555 47889989987777665543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.41 Score=56.01 Aligned_cols=126 Identities=16% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCCcEEEEEEe----CCCCcEEEEeeccCeEEEEEccC--CceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 343 h~~~V~~v~fs----pdg~~lla~gs~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
..++|-.++|- |.|+ . .-|...||+++- |+......++ ....-...+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~-~-----~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-R-----LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH-H-----HhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence 45667777763 4444 1 225778898753 4433221111 1122233344555554
Q ss_pred ---CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE-----------ecCCCeEEEEEecCCCeEEEEe-
Q 001190 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-----------AYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 417 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f-----------s~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
+..++..+-.++.|++..+++... . .+.+|...+.+++| ||||. .++.++.||.++.|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 677888888888988887776432 1 35578888877664 89999 899999999999998
Q ss_pred -cCCC----eEEEecCCC
Q 001190 482 -LSGR----KLFNFEGHE 494 (1128)
Q Consensus 482 -~~g~----~~~~~~~h~ 494 (1128)
.+|+ +++.++.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 6665 445666776
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.59 E-value=6.3 Score=39.06 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=83.1
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cC---eEEEEe---cC--Ccc
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ET---QLAIYD---AS--KME 995 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~---~i~v~d---~~--~~~ 995 (1128)
+.|+.+...+.|.+|++...++.....+... +.+..+.++.-|.++++-. .. .+|+|- .. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3444445567899999995443333322221 6788999999999999953 22 566652 11 111
Q ss_pred cccc-cccCC------------------CCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCce-EEEeCCCCCCCCcc
Q 001190 996 RIRQ-WTPQD------------------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL-RCYIAPSTYLSPSV 1055 (1128)
Q Consensus 996 ~~~~-~~~~~------------------~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~ 1055 (1128)
.++. +.++. ....++.+++-.|-..-|++|+ ++.+.+|.+..... ...+.-.-+. ...
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe-~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFE-RSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEech-hhh
Confidence 1110 11100 0145667777777433355565 67899998876544 1111100111 112
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+.+.....+..+++.. ++++ ..++-.+++.++.
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA-~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIA-VMSDLEVLVLKLE 214 (215)
T ss_pred hheecCceEEEEEEEe---eEEE-EecCCEEEEEEEe
Confidence 2334444567777764 4454 4456777777653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=7.1 Score=45.64 Aligned_cols=188 Identities=9% Similarity=0.033 Sum_probs=93.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCC--CcEEEEECCCCcccceeE
Q 001190 884 DNNIIAIGTEDS-----TIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 884 d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D--g~i~iwd~~~~~~~~~~~ 954 (1128)
++.++++|+.++ ++..||..+++- +..+.........+ .-+++..+.||.+ ..+..||..+++- ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence 566777777543 466788776542 22222211122222 2467777778764 3577788665421 11
Q ss_pred EeecCCCCCCCccEEEEcCCCCEEEEEe-c---CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 955 IHIPAGKTPTGDTRVQFNADQVRMLVVH-E---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 955 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
.. .-.. ......+..-+|+..++|+ + ..+..||..+..-...-.... ..-...+..-+|++.+.| |.
T Consensus 346 ~~--~l~~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~---~r~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 346 MP--SLLK-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY---PHYKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CC--CCCC-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC---ccccceEEEECCEEEEEC---Cc
Confidence 11 1111 1111122233566666643 2 457788877654332211111 111112234567766666 45
Q ss_pred EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCccc
Q 001190 1031 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1031 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~ 1100 (1128)
+.+||.++++-.. +.+ ++.. +.+. +++.. ++.+++.||.+ .++..+|+.+++ |..
T Consensus 417 ~e~ydp~~~~W~~-~~~---m~~~---r~~~----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~ 476 (480)
T PHA02790 417 AEFYCESSNTWTL-IDD---PIYP---RDNP----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNI 476 (480)
T ss_pred eEEecCCCCcEeE-cCC---CCCC---cccc----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe--EEe
Confidence 7889988765432 221 1111 1111 12222 56788888865 357888888765 753
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.61 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred CcEEEEEEeCCCC--cEEEEeeccCeEEEEEccCC
Q 001190 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1128)
Q Consensus 345 ~~V~~v~fspdg~--~lla~gs~d~~i~iwd~~~~ 377 (1128)
++|.++.|||+.. .||+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998543 47888778899999999853
|
It contains a characteristic DLL sequence motif. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.06 E-value=46 Score=40.88 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=60.9
Q ss_pred EEeccCCCeEEEEeCCeEEEEECCCceEEEEee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEE--Eecccceeeeccc
Q 001190 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLK 912 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~i--wd~~~~~~~~~l~ 912 (1128)
.|+.|-+.++.+|-+..+++||+...++++... .-...|+.+.+ .+..+++|..--.|.+ |+-...+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 455577778888888999999998776655433 23556777777 4456777765555554 444444433 332
Q ss_pred ccc--cCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 913 GHQ--KRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 913 ~h~--~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
... ..|+++.+-.. ..+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDY-DTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEecC-CceeeccccCcEEEEEC
Confidence 221 23566655533 45565555555555444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.99 E-value=20 Score=36.64 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=130.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccccee
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 953 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~ 953 (1128)
.-..++-+| ||..-.++...+.|--.|-.+|+....--+....-..+..-|||...++-+.. -|.=.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677778 88888888888888888888887766555555556678888998877764433 34444555543 22
Q ss_pred EEeecCCCCCCCccEEEEcCCCCEEEEEecC----------eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 954 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET----------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 954 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----------~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
.......+.........|.++|.+-+++..| .|++|+.. . ...-..|+..|||...+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------q--G~gpyGi~atpdGsvwy 204 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------Q--GGGPYGICATPDGSVWY 204 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------C--CCCCcceEECCCCcEEE
Confidence 3333444555788899999999998886432 34555543 2 45557888999999888
Q ss_pred EEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCccc
Q 001190 1024 ATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
+.-.++.|..-|..++....... ...+. . ....+--+| -+..-++....+.+.-+|.+... |.+
T Consensus 205 aslagnaiaridp~~~~aev~p~-P~~~~--------~-gsRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~e 268 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAEVVPQ-PNALK--------A-GSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIE 268 (353)
T ss_pred EeccccceEEcccccCCcceecC-CCccc--------c-cccccccCc-cCcEEEeccCCceeeEeCccccc--cee
Confidence 87788888888888774332222 11111 1 112333344 47788888888899999888866 876
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.86 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.8
Q ss_pred cceEEEEEccCC---CEEEEEeCCCeEEEEEccCC
Q 001190 407 ISVSRVAWSPDG---NYVGVAFTKHLIQLYSYAGS 438 (1128)
Q Consensus 407 ~~V~~l~~spdg---~~las~~~d~~i~vwd~~~~ 438 (1128)
+.|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=32 Score=37.87 Aligned_cols=154 Identities=12% Similarity=0.180 Sum_probs=91.6
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCc--eEEEEe-eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee--
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTF--KVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-- 908 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~-~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-- 908 (1128)
-+.+-|...++.++....|.+.-|.+... .....+ ....++|.++.||+ |++.||+--.|.+|.+++....+..
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhH
Confidence 34455655555555444444444544321 112222 23466899999999 9999999999999999998433222
Q ss_pred --ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---c
Q 001190 909 --SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E 983 (1128)
Q Consensus 909 --~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d 983 (1128)
.+.+..+..|.+..|+.. .-+|.....| +-+|.+...+.. +.....+. ..+....|.++...++.++ .
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs----lRlVks~~-~nvnWy~yc~et~v~LL~t~~~~ 176 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS----LRLVKSHN-LNVNWYMYCPETAVILLSTTVLE 176 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh----hhhhhhcc-cCccEEEEccccceEeeeccccc
Confidence 233344556889999876 5666666555 777776553211 11111111 6788888999887665542 3
Q ss_pred CeEEEEecCCcc
Q 001190 984 TQLAIYDASKME 995 (1128)
Q Consensus 984 ~~i~v~d~~~~~ 995 (1128)
+.+.=+.++++.
T Consensus 177 n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 177 NVLNPFHFRAGT 188 (657)
T ss_pred cccccEEEeece
Confidence 444444444443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.18 E-value=33 Score=37.70 Aligned_cols=164 Identities=12% Similarity=0.141 Sum_probs=92.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCc------EEEEeccc--c--eee-----eccccccc--------CeeEEEEcCCCC
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDST------IHIYNVRV--D--EVK-----SKLKGHQK--------RITGLAFSTSLN 928 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 928 (1128)
-+.+..+.+.+.++. +++.+.+|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788888863444 445566666 66555543 1 000 11111111 233678888898
Q ss_pred EEEEEcCC------CcEEEEECCCCcccceeEEeec---------CCCCCCCccEEEEcCCCCEEEEE------ecC--e
Q 001190 929 ILVSSGAD------AQLCVWSIDTWEKRKSVTIHIP---------AGKTPTGDTRVQFNADQVRMLVV------HET--Q 985 (1128)
Q Consensus 929 ~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~v~~v~~s~d~~~l~~~------~d~--~ 985 (1128)
++++.-.+ ..|..++.. |+....+.+... ........-.++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 788888877 665544432221 11222678899999999955553 122 1
Q ss_pred -------EE--EEecCC-cccccccccCCC------CCCCeEEEEEeeCCCEEEEEe-----cCCcEEEEecC
Q 001190 986 -------LA--IYDASK-MERIRQWTPQDA------LSAPISCAVYSCNSQLVFATF-----CDGNIGVFDAD 1037 (1128)
Q Consensus 986 -------i~--v~d~~~-~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~t~~-----~dg~i~vwd~~ 1037 (1128)
++ .||..+ +.....+..... ....|..+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 34 455544 323332221111 257889999999999777421 23456666544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.99 E-value=8.8 Score=38.05 Aligned_cols=49 Identities=12% Similarity=0.388 Sum_probs=36.2
Q ss_pred CEEEEEECCCcEEEEECC--CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+.|+.+...+.|.+|++. ..+....+.. .+.|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 456555677889999988 3445555543 347899999999999998754
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.94 E-value=47 Score=39.20 Aligned_cols=391 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCC-------CcceEEEEEcc-----
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-------PISVSRVAWSP----- 416 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp----- 416 (1128)
++..|.|| .++.+..++.+.|+.++. ...... ...| ...|..++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCEEEEEeCCCe------EEEEEccCCCcceeceeecc------cccceeEEEEecCCCeEEEEEecCCCeEEEEe--c
Q 001190 417 DGNYVGVAFTKHL------IQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1128)
Q Consensus 417 dg~~las~~~d~~------i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~ 482 (1128)
+...+|.--.+.. ..-|+...+-.......-.. +..+..-+..-.... .++.++..-.+..=. .
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~~~~i~y~~~~~~ 186 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGGENIIIYKNHLIG 186 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEESSEEEEEE----
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEECCEEEEEeccccc
Q ss_pred CCCeEEEecCC-----CCCeEEEec-----cCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCC-CCeEEEEEEcCC
Q 001190 483 SGRKLFNFEGH-----EAPVYSICP-----HHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP-GHWCTTMLYSAD 549 (1128)
Q Consensus 483 ~g~~~~~~~~h-----~~~v~~~~~-----~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~-~~~i~~~~~s~~ 549 (1128)
.+.....-... ..-+.+.+. ....++..++.+..+|.+..-.+.... ......+. .....++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~ 266 (504)
T PF10433_consen 187 SGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN 266 (504)
T ss_dssp --TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST
T ss_pred ccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC
Q ss_pred C--CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEe----CCCC------EEEEEE---CCCcEEEEEC
Q 001190 550 G--SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD----TTQN------HFLAVG---EDSQIKFWDM 614 (1128)
Q Consensus 550 g--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~s---~dg~i~iwd~ 614 (1128)
| -.++.+.. +|+.+.-|....-+.+..+..-. ++..+++. .... .+++++ .+|.+++..-
T Consensus 267 g~d~lf~gs~~---gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 267 GGDYLFVGSEF---GDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp T--EEEEEESS---S-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCEEEEEEEec---CCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc--cCccccccccCCccccccCcceeeeeecccc
Q 001190 615 DNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
.-+-. ......-.+...++.+....+....+..+....-+++.+. .....+..+....+......+..-.+. +.
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~ 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DG 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TT
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CC
Q ss_pred cccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEE
Q 001190 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1128)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1128)
.+ +
T Consensus 420 ~i-----------------------------------------------------------------------------v 422 (504)
T PF10433_consen 420 RI-----------------------------------------------------------------------------V 422 (504)
T ss_dssp EE-----------------------------------------------------------------------------E
T ss_pred eE-----------------------------------------------------------------------------E
Q ss_pred EEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe
Q 001190 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1128)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 850 (1128)
.+.+.+-.++..........|.. ..+..-..+...++..+++..
T Consensus 423 QVt~~~i~l~~~~~~~~~~~w~~------------------------------------~~~~~I~~a~~~~~~v~v~~~ 466 (504)
T PF10433_consen 423 QVTPKGIRLIDLEDGKLTQEWKP------------------------------------PAGSIIVAASINDPQVLVALS 466 (504)
T ss_dssp EEESSEEEEEESSSTSEEEEEE-------------------------------------TTS---SEEEESSSEEEEEE-
T ss_pred EEecCeEEEEECCCCeEEEEEeC------------------------------------CCCCeEEEEEECCCEEEEEEe
Q ss_pred CCeEEEEECCCceEEEEeeCC-----CCCeeEEEEcC
Q 001190 851 GGKISLFNMMTFKVMTTFMSP-----PPASTFLAFHP 882 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~ 882 (1128)
++.+..+.+............ ...|.|+...|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 467 GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
|
... |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.45 E-value=12 Score=34.04 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=71.1
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-----CCCEEEE
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGV 423 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las 423 (1128)
.-.|..... -|++++.-|.|.|.+.......... ......+-.-...|++++-.| +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 344555555 5688888999999998755432210 000111333456788876554 3456666
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEec----CCCeEEEEEecCCCeEEEEecCCCeE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKL 487 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~----d~~~~~l~s~s~d~~i~vWd~~g~~~ 487 (1128)
|+. ..+..||+.....+. .+.-.+.|+++.+-. +.. +++.|+ ...|.-+|.+|..+
T Consensus 70 Gt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~--l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 70 GTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP--LVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred ecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc--EEEECc-eEEEEEeCCCCcEE
Confidence 655 469999999876654 334456788887732 233 455554 67888888666654
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.43 E-value=52 Score=38.95 Aligned_cols=58 Identities=14% Similarity=0.289 Sum_probs=38.8
Q ss_pred CCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEE
Q 001190 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l 888 (1128)
...+...+|.-....++.+..+.+++|...+..-.....-....+.-+.|+|.....|
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEE
Confidence 3445666776666777777788999999877654444333455677889998433333
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=89.15 E-value=1 Score=41.66 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhh
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQL 130 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 130 (1128)
.++|.++-+.||||+..|...+|..|+++.-.-+.....+++++|+.+....+..+++..
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~ 87 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELA 87 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHH
Confidence 399999999999999999999999999876555544567778888777666555544443
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.8 Score=50.93 Aligned_cols=169 Identities=14% Similarity=0.234 Sum_probs=97.8
Q ss_pred CCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE
Q 001190 331 DDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 331 ~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
.+.|..+...+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+++++..... +.+-+..|.
T Consensus 65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl 123 (1311)
T KOG1900|consen 65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL 123 (1311)
T ss_pred ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence 3444455555555555555555555332444 4789999999998654432 334444555
Q ss_pred EEEE--------ccCCCEEEEEeCCCeEEEEEccCCCcceeceeec------ccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 411 RVAW--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 411 ~l~~--------spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~------~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.|.. -|.=++++..+.--.|.++-+.-.+.......+. -..-.|+++....+|+ .++ +|.||
T Consensus 124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg- 199 (1311)
T KOG1900|consen 124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG- 199 (1311)
T ss_pred eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC-
Confidence 5433 3333455555444556776554222111111122 2355788999888888 555 45566
Q ss_pred EEEEe-----cCC---C-e----------------EEEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 477 IKVWE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 477 i~vWd-----~~g---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.+|. .+| + + +..+. .+.++|..+.+.. ....+++-+..|+|.+|++..
T Consensus 200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 4454 111 1 0 11223 5677999999854 447899999999999999865
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.25 Score=53.80 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=88.9
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+....+.-+...-.++|.-+|..+++.+-..+.+.|||+.+..... + ..-..|.... +.|
T Consensus 65 gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~w 125 (615)
T KOG2247|consen 65 GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAW 125 (615)
T ss_pred cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--Hhh
Confidence 34444444555666777777887666667788999999997654211 0 0011233333 789
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~ 486 (1128)
++.+..++.+...|.+.|++..+.+... ....|..++++++|.+++. .+.++.|..+.+-...|..
T Consensus 126 sKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qeget 191 (615)
T KOG2247|consen 126 SKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGET 191 (615)
T ss_pred ccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhccce
Confidence 9999999999999999999988765443 3444999999999999985 7888888877666533433
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=82 Score=39.82 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=18.0
Q ss_pred CcccEEEEEEecCcceEEEeecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSN 785 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~d 785 (1128)
+...+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 66778899999999977665444
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.7 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=22.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeecc--CeEEEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d--~~i~iw 372 (1128)
.....-.+..|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678999999999888887777 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.30 E-value=3.1 Score=40.71 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.6
Q ss_pred cceEEEEEccCC------CEEEEEeCCCeEEEEEccC
Q 001190 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 407 ~~V~~l~~spdg------~~las~~~d~~i~vwd~~~ 437 (1128)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999943 4788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.23 E-value=21 Score=41.99 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCEEEEE-ecC-----eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 964 TGDTRVQFNADQVRMLVV-HET-----QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~-~d~-----~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
+.-..+.|-|.|..+++- +|| .+.++.- +|-.-..+.........+..++|.-....++.+ ..+.|++|-..
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 334568999999999983 232 3444443 332222222111114556667776666655544 57789999987
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCCCCCCc
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGI 1108 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p~~~~~ 1108 (1128)
+-.-..+... ....+.-+.|+|...+.+...+.....+ =.++......+...|.|+|.
T Consensus 325 NyhWYLK~e~------------~ip~~s~vkwhpe~~nTl~f~d~~~I~~-V~f~~k~~~~~s~~p~d~g~ 382 (1243)
T COG5290 325 NYHWYLKVER------------QIPGISYVKWHPEEKNTLLFRDGERILR-VFFSEKKTHHGSEYPFDNGT 382 (1243)
T ss_pred ceEEEEEEee------------cCCCcceeeeccccCcEEEEecCCeEEE-EEeehhhhcCCcccCccCCc
Confidence 7655444331 1112245789998777666655443333 33444434455567777764
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.10 E-value=40 Score=38.48 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--eeeccc-----ccccCeeEEEEcCCC------CEEEEEc-C--
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLK-----GHQKRITGLAFSTSL------NILVSSG-A-- 935 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~~-~-- 935 (1128)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+. .-.+....|+++|+- .+|.... .
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34568899999 88887766557999999865542 221121 124668899999884 2333221 1
Q ss_pred -------CCcEEEEECCCC--cccc-eeEEeecCCCCCCCccEEEEcCCCCEEEEEec
Q 001190 936 -------DAQLCVWSIDTW--EKRK-SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1128)
Q Consensus 936 -------Dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 983 (1128)
...|.-|.+... .... ...+..........-..|+|.|||.++++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 223444554421 1111 11111111111134678899999987776443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.48 E-value=22 Score=42.51 Aligned_cols=111 Identities=12% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCeeEEEecc--CCCeEEEEe-CCeEEEEECCCc-----------e---------EEEEeeCCCCCeeEEEEc--CCCCC
Q 001190 832 EAVPCIALSK--NDSYVMSAT-GGKISLFNMMTF-----------K---------VMTTFMSPPPASTFLAFH--PQDNN 886 (1128)
Q Consensus 832 ~~v~~~~~s~--dg~~la~~~-dg~i~vwd~~~~-----------~---------~~~~~~~~~~~v~~l~~s--~~d~~ 886 (1128)
..|+.+.+.. +...|+.+. ||.|.+|.+++- + +...+. -...+..++++ . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 3455555443 445666665 899999976311 0 111111 23467889998 6 788
Q ss_pred EEEEEeCCCcEEEEecccc--eeee-cccccccCeeEEEEcCCC-----C-EEEEEcCCCcEEEEEC
Q 001190 887 IIAIGTEDSTIHIYNVRVD--EVKS-KLKGHQKRITGLAFSTSL-----N-ILVSSGADAQLCVWSI 944 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~--~~~~-~l~~h~~~V~~l~~s~d~-----~-~l~s~~~Dg~i~iwd~ 944 (1128)
+||+++....|.||-.... +... .-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888866542 1111 111256678999997653 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=87.47 E-value=59 Score=37.16 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=40.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..-+..+.++|.|||+ +|++--..|.|++++-.++.......+ .......-.+....|+|+|+-
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3456789999999998 767653369999998655432110000 000111136788999999984
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=87.20 E-value=4.4 Score=35.46 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcCHHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHH
Q 001190 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1128)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1128)
..+..|-+..|..|++..| +.+.+++|.||++- ..|.-+ |+.+..|.......... ...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~rL-----d~ii~~lg~~~~~~~~~-------~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRNRL-----DKIIEKLGYEEDEEEEE-------EDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHHHH-----HHHHHHhCCCCCccccc-------chhHHHH
Confidence 3566778889999999999 99999999999994 222211 33333333311111111 1236778
Q ss_pred hHhhccCC--HHHHHHHHH
Q 001190 82 LEALDRQD--KAKAVDILV 98 (1128)
Q Consensus 82 ~ell~~~~--~~~a~~~l~ 98 (1128)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 89999988 677888764
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.71 E-value=54 Score=35.99 Aligned_cols=111 Identities=7% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCC-----cEEEEECCCCccc-ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe------cCeEEEEecCC
Q 001190 926 SLNILVSSGADA-----QLCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------ETQLAIYDASK 993 (1128)
Q Consensus 926 d~~~l~s~~~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~------d~~i~v~d~~~ 993 (1128)
++.+++.|+.++ .+..+|+.+.+-. ...... .......-..++. -+++..+.+. ...+..||..+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 556777777643 4666777664421 011111 1111011112222 2455555543 23588888876
Q ss_pred cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC----cEEEEecCCCce
Q 001190 994 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----NIGVFDADTLRL 1041 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg----~i~vwd~~~~~~ 1041 (1128)
.+-...-.... .......+...++++.+.|+.++ .+.+||.++.+-
T Consensus 149 ~~W~~~~~~p~--~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFPG--EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCCC--CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 54322111110 11222333455777777777654 356888887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.9 Score=42.53 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCc
Q 001190 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNF 124 (1128)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~ 124 (1128)
++|.|+-+.|++|+..+..++|..|+.+.-.-+.....+++++|..+....+.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 99999999999999999999999999886555544456667777655444433
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.35 E-value=40 Score=37.01 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=93.6
Q ss_pred CcccEEEEEEecCcceEEEeeccce------eEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
.-+.+.++.+.+++..+++.+.+|. +...++..... ..+.........+-+.. |.... . ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 4567788999977667777787776 55554443111 11111111111111111 11110 0 1225667
Q ss_pred EEeccCCCeEEEEe-C------CeEEEEECCCceEEEEee---------------CCCCCeeEEEEcCCCCCEEEEEeC-
Q 001190 837 IALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTE- 893 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~d~~~lasg~~- 893 (1128)
+++.++|.++++.. + ..|..++.. |+....+. ..+...-+|+++| +|+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888888876 5 568888876 66554441 1234578999999 8885555432
Q ss_pred ----CC--c-------EEEEecc--c-ceeee----cccc-----cccCeeEEEEcCCCCEEEEE-----cCCCcEEEEE
Q 001190 894 ----DS--T-------IHIYNVR--V-DEVKS----KLKG-----HQKRITGLAFSTSLNILVSS-----GADAQLCVWS 943 (1128)
Q Consensus 894 ----dg--~-------v~iwd~~--~-~~~~~----~l~~-----h~~~V~~l~~s~d~~~l~s~-----~~Dg~i~iwd 943 (1128)
|+ . ++|+... + ++... .+.. ....|..+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4555443 3 22222 2221 34678888898998866641 1233455555
Q ss_pred CC
Q 001190 944 ID 945 (1128)
Q Consensus 944 ~~ 945 (1128)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.13 E-value=27 Score=44.41 Aligned_cols=233 Identities=9% Similarity=0.089 Sum_probs=110.9
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 907 (1128)
.......++|+|..+++|.+. .|.|++|-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce
Confidence 345667899999999999998 89999997654443332221111 222222222 112223344556666665543221
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
+. +...+++...-+--.+ .-+ ..+.+++||..--.... .......... .......++.-.......+-.-.
T Consensus 113 ~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 113 VF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSD-LKYAGTESSN--FVPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhcc-ceeccccccc--cceeeeeccceeeeccccccccc
Confidence 11 1122333222221123 334 78888888876432211 1111111100 00000001100000000111111
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1067 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1128)
++.+..-. ..+ ..+..++.+..+..++..+. +...+.+-+|+............ .. .
T Consensus 184 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~ 240 (993)
T KOG1983|consen 184 LISLPDAY--LGL---SLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLP-----NG------------Q 240 (993)
T ss_pred eeeccccc--ccc---cccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhccc-----cc------------c
Confidence 11111111 011 11256666666666665443 44567778887766554333331 11 1
Q ss_pred EEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1068 AAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1068 ~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
.+.+ ++..++++..||.+.+||++.+..
T Consensus 241 ~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 241 LESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 1134 688999999999999999999865
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.99 E-value=91 Score=38.98 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-ccccCee
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~ 919 (1128)
+.+|++|. +-.=.-+....-..+....|..+.+..++.- +...+..+..++....-+.........+. .-..+|.
T Consensus 6 ~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~ 83 (765)
T PF10214_consen 6 GSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRL--DEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIK 83 (765)
T ss_pred CccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEe--cccccccccccccccccCCCCccccceeEcCCCCCee
Q ss_pred EEEEc------CCCCEEEEEcCCCcEEEEE----------CCCCcccceeEEeecCCCCC--CCccEEEEcC-CCCEEEE
Q 001190 920 GLAFS------TSLNILVSSGADAQLCVWS----------IDTWEKRKSVTIHIPAGKTP--TGDTRVQFNA-DQVRMLV 980 (1128)
Q Consensus 920 ~l~~s------~d~~~l~s~~~Dg~i~iwd----------~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~-d~~~l~~ 980 (1128)
.|.|+ .....++.+=....+.|+. -.....+...++.....+.. .+...|+|+| +...+|+
T Consensus 84 qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~Ai 163 (765)
T PF10214_consen 84 QIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAI 163 (765)
T ss_pred EEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEE
Q ss_pred Ee-cCeEEEEec--CCcccccccccCCCCCCCe------E----EEEEeeCCCEEEEEecCCcEEEEecCCCceEE-EeC
Q 001190 981 VH-ETQLAIYDA--SKMERIRQWTPQDALSAPI------S----CAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIA 1046 (1128)
Q Consensus 981 ~~-d~~i~v~d~--~~~~~~~~~~~~~~h~~~v------~----~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~~~ 1046 (1128)
.+ .|...||++ ........+.....+.+.+ . .+.|.++-..|++.+ ...+.++|+++..... ...
T Consensus 164 VD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~ 242 (765)
T PF10214_consen 164 VDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVT 242 (765)
T ss_pred EeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhcc
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.....+++.+.-+|.+..+++.-.. .+|.+.++....
T Consensus 243 -----------~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~ 279 (765)
T PF10214_consen 243 -----------AKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSS 279 (765)
T ss_pred -----------CCChhheeeEEecCCccceEEEEec-CeEEEEEccCCC
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.5 Score=42.97 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCCccccee-EEe-ecCC------CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TIH-IPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~-~~~-~~~~------~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
+..++++|+....+|.+++||+.+++..... .+. .... .....+..+.++.+|.-+++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557889999999999999999997754333 111 1110 2236778888888898888878888888887644
Q ss_pred c
Q 001190 995 E 995 (1128)
Q Consensus 995 ~ 995 (1128)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.89 E-value=14 Score=40.97 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=88.8
Q ss_pred EEEcCCCCCEEE-EEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC--------CEEEEEcCCCcEEEEECCC-C
Q 001190 878 LAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--------NILVSSGADAQLCVWSIDT-W 947 (1128)
Q Consensus 878 l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~l~s~~~Dg~i~iwd~~~-~ 947 (1128)
+..+.++..+|. .|.....++-.|+..|+.+.++..|..- -|.|.|+. +.|+-.+ |..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 334333555554 4556677888899999999999888665 57788754 3455444 44444334332 2
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
..+....... -......++..-... -+++++ ..|.|++||--..+....+... +..|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKd--Y~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKD--YKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehh--ccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee
Confidence 2222211111 111122333333334 455554 5899999996544433333333 78899999999999988776
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
..++.+-|+.
T Consensus 623 -k~yllL~d~~ 632 (776)
T COG5167 623 -KNYLLLTDVP 632 (776)
T ss_pred -cceEEEEecc
Confidence 5677777764
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.72 E-value=70 Score=35.45 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=15.1
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCc
Q 001190 926 SLNILVSSGAD-----AQLCVWSIDTWE 948 (1128)
Q Consensus 926 d~~~l~s~~~D-----g~i~iwd~~~~~ 948 (1128)
++++++.||.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56677777754 247788887643
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.48 E-value=6.2 Score=46.88 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=77.7
Q ss_pred EEEEEEeCC-CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc--cCCCEEEE
Q 001190 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (1128)
Q Consensus 347 V~~v~fspd-g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~las 423 (1128)
|+.+...-- |..+|+.+..||.|.+|.+++=-......-+-.+...........+...-...+..++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 444443332 234788889999999998743110000000000000000001111222345689999998 88899999
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCC----eEEEEEecCCCeEEEEe
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK----LLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~----~~~l~s~s~d~~i~vWd 481 (1128)
++....|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|+
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99888888887665311111101113667899999987641 13688899999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.40 E-value=5.1 Score=40.79 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=51.9
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
+..++.+ |.+-+.+|.+++||+.+++.+... +.+..+-.... ... ......|..+.++.+|.-|++-+ +|...
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~-~~~---~~~~~~i~~~~lt~~G~PiV~ls-ng~~y 90 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSP-VSD---KSSSPNITSCSLTSNGVPIVTLS-NGDSY 90 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccc-ccc---CCCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence 5556774 555678999999999999877532 11111100000 000 04667899999999998887765 46788
Q ss_pred EEEccCCC
Q 001190 432 LYSYAGSN 439 (1128)
Q Consensus 432 vwd~~~~~ 439 (1128)
.|+.+-+.
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 88876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.21 E-value=33 Score=38.27 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=90.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCC------CccEEEEEeccCcEEEEecC
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~~wd~~ 526 (1128)
..-+....+.+.+++..|+....++-.| ..|+.+..+.-|...| +.|.|.. +.+.|+ |-.+..|.--|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 3344444444544666777777888888 8899998888777653 3443321 223444 4445555445655
Q ss_pred CCCceeeecCCCC-----eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 527 TMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 527 ~~~~~~~~~~~~~-----~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+.......... ...+..-. ...++++++. .|-|++||.-..+....+++... .|..+..+.+|++++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 5443332222111 12222222 3347777764 77799999766666666666655 777889999999988
Q ss_pred EEECCCcEEEEEC
Q 001190 602 AVGEDSQIKFWDM 614 (1128)
Q Consensus 602 ~~s~dg~i~iwd~ 614 (1128)
+.+.. .+.+-|+
T Consensus 620 aTCk~-yllL~d~ 631 (776)
T COG5167 620 ATCKN-YLLLTDV 631 (776)
T ss_pred Eeecc-eEEEEec
Confidence 87754 5555554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.94 E-value=9.6 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=32.3
Q ss_pred ceEEEEEecC-----CCCEEEEEECCCcEEEEcCCCC-CCCcccC
Q 001190 1063 YPLVVAAHPL-----EPNQFAIGLTDGSVKVMEPSES-EGKWGVS 1101 (1128)
Q Consensus 1063 ~~~~~~~~p~-----~~~~l~s~~~dg~i~iWd~~~~-~~~w~~~ 1101 (1128)
.+..++|||. ...+|++.+.+|.|.||..... .++|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v 131 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRV 131 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeee
Confidence 6789999994 2457999999999999999876 7778864
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.33 E-value=23 Score=45.08 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=45.0
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
+...+.+..+......++... .+.+..|+.........+...... .+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCC
Confidence 344455555554444444432 556666765544444444333221 177889999999999999999998
Q ss_pred Cee
Q 001190 617 VNI 619 (1128)
Q Consensus 617 ~~~ 619 (1128)
+..
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=83.29 E-value=69 Score=34.31 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=84.0
Q ss_pred eEEEEe-cCCCeEEEecC------CCCCeEEEeccCCCC----ccEEEEEeccCcEEEEecCCCCceeeecCC-------
Q 001190 476 LIKVWE-LSGRKLFNFEG------HEAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------- 537 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------- 537 (1128)
.|.+|| .+++.++++.- ..+.+..+.+..... +...++-+..+-|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 455677 66766665532 234566776654322 223334444568889998876554433221
Q ss_pred ------------CCeEEEEEEcC---CCCeEEEeeeccCCCceEEEEeCCCCc--------------eeeEeccccCCce
Q 001190 538 ------------GHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGT--------------IKRTYAGFRKKSN 588 (1128)
Q Consensus 538 ------------~~~i~~~~~s~---~g~~l~~~~~~~~~~~~i~~wd~~~~~--------------~~~~~~~~~~~~v 588 (1128)
...+..++.+| +|+.|..... ..-.+|.+.+.- .++.+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l-----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL-----SSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeC-----CCCcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255666655 6666665542 112333332210 11111 2222245
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCe---eeEEEecCCC-CCCcceEEEcC--CCCEEEEE
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---ILTSTDAEGG-LPNLPRLRFSK--EGNLLAVT 647 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~v~~sp--~~~~l~~~ 647 (1128)
..++++++|..+++--..+.|..|+..+.- ....+..... ...+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 668889988888888889999999987621 1222222121 23456777777 55444433
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.98 E-value=34 Score=33.58 Aligned_cols=136 Identities=9% Similarity=0.065 Sum_probs=79.0
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccc--c---c
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH--Q---K 916 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~---~ 916 (1128)
|.-+..+-.+|.-..+|.++.+++..+.- .+.=..++. |++-|..+....+++.-|.++-....++... . .
T Consensus 101 d~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~ 176 (262)
T COG3823 101 DYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS 176 (262)
T ss_pred ceEEEEEeccceeEEEChHHhhhhccccc-CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecc
Confidence 43455666689999999999988877652 333345544 4444656655666777776654433332211 1 1
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEEEEEe
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
.++-+.|- ||...|-.-.+..|..-+.++|+....+.+.... .........+++.|++..+....
T Consensus 177 ~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22334443 5666666655666666777777766655443211 11124677899999986555543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.84 E-value=83 Score=34.86 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=89.1
Q ss_pred CCCeEEEEe-C-------CeEEEEECCCceEEEEee-C--CCC---CeeEEEEcCCCCCEEEEEeCC-----CcEEEEec
Q 001190 842 NDSYVMSAT-G-------GKISLFNMMTFKVMTTFM-S--PPP---ASTFLAFHPQDNNIIAIGTED-----STIHIYNV 902 (1128)
Q Consensus 842 dg~~la~~~-d-------g~i~vwd~~~~~~~~~~~-~--~~~---~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~ 902 (1128)
++++++.|+ + ..+.+||..+.+-...-. + ... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888887754322111 0 110 1122233 66788888754 35788888
Q ss_pred ccce--eeecccc---cccCeeEEEEcCCCCEEEEEcCC-----------CcEEEEECCCCcccceeEEeecC-CCCCCC
Q 001190 903 RVDE--VKSKLKG---HQKRITGLAFSTSLNILVSSGAD-----------AQLCVWSIDTWEKRKSVTIHIPA-GKTPTG 965 (1128)
Q Consensus 903 ~~~~--~~~~l~~---h~~~V~~l~~s~d~~~l~s~~~D-----------g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~ 965 (1128)
.+.+ .+..+.. ........+...++++++.|+.+ ..+.+||..+.+=. .+.... ......
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~---~l~~~~~~~~~r~ 185 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV---QLPDPGENFEKRG 185 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe---eCCCCCCCCCCCC
Confidence 7653 2222210 11111222223456777777754 24677888764321 111110 000011
Q ss_pred ccEEEEcCCCCEEEEEe--------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC---
Q 001190 966 DTRVQFNADQVRMLVVH--------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--- 1028 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--- 1028 (1128)
-..++. -+++.++++. ...+.+||..+.+-...-.............+..-++++++.|+..
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~ 264 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPD 264 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCc
Confidence 112222 3455555432 1458889887665432211000001111112223367777777742
Q ss_pred -----------CcEEEEecCCCce
Q 001190 1029 -----------GNIGVFDADTLRL 1041 (1128)
Q Consensus 1029 -----------g~i~vwd~~~~~~ 1041 (1128)
+.+..+|+++.+-
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred cccccccccccccEEEEEcCccEE
Confidence 2578888877654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.84 E-value=5.3 Score=43.39 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=94.4
Q ss_pred eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee-ecc-ccccc----Cee-EEEEcCCCCEEEEEcC
Q 001190 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKL-KGHQK----RIT-GLAFSTSLNILVSSGA 935 (1128)
Q Consensus 863 ~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~~~ 935 (1128)
+.++.+......+..+-..| |++.+..-+. .++.++++.+.... +++ ....+ .|+ .+..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667788999999 8988876664 78899988765322 111 11111 122 2222345666777888
Q ss_pred CCcEEEE-ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 936 DAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 936 Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
||.|.-| |+..+............ -.+.++..+.-..+.+-+++ ...|++.++.....+.+..-.. -..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~-l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFK-LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccc-cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCccee
Confidence 9988777 55443321111111100 00122222221122222333 2367777766554444332222 3456788
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCce
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRL 1041 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~ 1041 (1128)
++||.+.+|++- ..|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999998875 477899999887543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=82.73 E-value=1.1e+02 Score=36.08 Aligned_cols=418 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred ccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEE
Q 001190 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST 514 (1128)
Q Consensus 435 ~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 514 (1128)
+.+.++-+ .......++++.-+|.|+ -++++..||+|++++...+....+-....+-..+.|...+ |++.
T Consensus 2 ikt~~~s~----~~k~~e~~~aiqshp~~~--s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg----l~~~ 71 (1636)
T KOG3616|consen 2 IKTFDCSR----DPKEDEFTTAIQSHPGGQ--SFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG----LVTA 71 (1636)
T ss_pred CccccccC----CccccceeeeeeecCCCc--eEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc----eEEE
Q ss_pred eccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEE
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1128)
..|..+.-|. +.+-....+..... ...++...|..+.++..-. +.|..+
T Consensus 72 tsdrr~la~~-~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlc---------------------------ggv~q~ 123 (1636)
T KOG3616|consen 72 TSDRRALAWK-EDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLC---------------------------GGVEQF 123 (1636)
T ss_pred eccchhheee-ccCcchhhccccchhhhhccceecCchhhhhhhhhc---------------------------cceeee
Q ss_pred EEe-----CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccc
Q 001190 592 QFD-----TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 592 ~~~-----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
.++ -.+++=.+--.-..|.+-|+.++.....+...+- .|--+.+-...++++.-... +|.+=|+++..-..-
T Consensus 124 dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~--aidelkilgkdryli~~ts~-siii~d~es~rfsei 200 (1636)
T KOG3616|consen 124 DCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGL--AIDELKILGKDRYLIAHTSE-SIIIADLESNRFSEI 200 (1636)
T ss_pred hHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCc--chhhhhhccccceEEeeccc-cEEEeecccchhhhh
Q ss_pred cccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEE
Q 001190 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1128)
Q Consensus 667 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (1128)
..++... ..-..++..+
T Consensus 201 ~wqgsgg--------------------------------------------------------------~ekfffd~~n- 217 (1636)
T KOG3616|consen 201 AWQGSGG--------------------------------------------------------------HEKFFFDFEN- 217 (1636)
T ss_pred hcccCCC--------------------------------------------------------------cceeeeecCc-
Q ss_pred eeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCC----------------CCCCceeeeecc
Q 001190 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ----------------NPSGKATASAVP 810 (1128)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~----------------~~~~~~~~~~~~ 810 (1128)
.|+.|....-.++--+.|+++---....... ..-.......-.
T Consensus 218 ---------------------~cli~nageltlveyg~d~slg~vrte~~nphlisvqike~~qksygrnfdse~n~~~a 276 (1636)
T KOG3616|consen 218 ---------------------CCLIFNAGELTLVEYGNDDSLGSVRTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLA 276 (1636)
T ss_pred ---------------------EEEEEecCeeEEEEecCCCcchhhhhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHH
Q ss_pred ceeccCCCc-cccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEE-EECCCceEEEEeeCCCCCeeEEEEcCCCCC
Q 001190 811 QHWLPSSGL-LMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISL-FNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1128)
Q Consensus 811 ~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~v-wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~ 886 (1128)
..-|+.+|+ ++...+ ......++-|--..+--+... =-.|.| -|+-.|.....+. |.+.|--+.... .+.
T Consensus 277 ~~~di~tgqicvfsdf----lqrrtssvffiikakakifndlqlphi~ipvdli~g~~~~~in-h~~~vdwielne-~~~ 350 (1636)
T KOG3616|consen 277 EHIDIKTGQICVFSDF----LQRRTSSVFFIIKAKAKIFNDLQLPHIAIPVDLIGGQNEGFIN-HEGAVDWIELNE-RAH 350 (1636)
T ss_pred HHhccccCceeeehhh----hhhccccceeeehhhhhhcccccCcceeeeeecccCccccccc-ccccccceeccc-hhh
Q ss_pred EEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCc
Q 001190 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1128)
.|..-...-.+.++|+.+.+....+ .-.+-+.|-|....++.-+.|.....|+++..++...+.+. +.|
T Consensus 351 kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt~~kik-------gdv 419 (1636)
T KOG3616|consen 351 KLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVTMFKIK-------GDV 419 (1636)
T ss_pred hhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCceEEEecCCcchhheeeEec-------ccc
Q ss_pred cEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 967 TRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
..+.-..+..-+++-..-.-.-|.+..+
T Consensus 420 ~~l~r~~~kteviv~e~takvayeld~~ 447 (1636)
T KOG3616|consen 420 EALERDADKTEVIVMEGTAKVAYELDEG 447 (1636)
T ss_pred hhhhcCCCceeEEEeecceeEEEEecCc
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=82.40 E-value=1.1e+02 Score=35.81 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c-----CeEEEEecCCc
Q 001190 926 SLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-----TQLAIYDASKM 994 (1128)
Q Consensus 926 d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-----~~i~v~d~~~~ 994 (1128)
++++++.|+.+ ..+..+|+.+.+-...... ...........++. -+++.++.+. + ..+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV--EEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC--CCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 56677777765 3577888876432111111 00001011112222 2444444442 2 34678887765
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEEecC----CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
+-...-.............+..-++++++.++.+ ..+.+||+.+.+-... ......+.... .| .++.+
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~-~~~g~~P~~R~--~~----~~~~~- 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV-ETFGVRPSERS--VF----ASAAV- 376 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe-ccCCCCCCCcc--ee----EEEEE-
Confidence 4322111000000111111223477877777755 4589999988764332 21111111110 11 11222
Q ss_pred cCCCCEEEEEECC--------------CcEEEEcCCCCCCCcccCCCC
Q 001190 1071 PLEPNQFAIGLTD--------------GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1071 p~~~~~l~s~~~d--------------g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
++++++.|+.+ +.+.++|+.+.+ |...++.
T Consensus 377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~--W~~~~~~ 420 (470)
T PLN02193 377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ--WERLDKF 420 (470)
T ss_pred --CCEEEEECCccCCccccccCccceeccEEEEEcCcCE--EEEcccC
Confidence 46788888854 246777777654 9876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1128 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 9e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 3e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 3e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 3e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 3e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 3e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 6e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 8e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1128 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.63 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.61 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.5 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.48 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.45 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.45 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.37 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.35 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.34 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.21 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.19 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.16 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.15 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.14 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.12 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.05 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.04 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.03 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.02 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.98 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.96 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.87 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.8 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.78 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.76 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.74 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.7 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.65 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.64 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.56 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.55 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.52 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.51 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.5 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.48 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.46 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.45 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.44 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.38 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.34 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.29 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.24 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.23 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.22 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.19 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.19 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 98.18 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.18 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.15 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.06 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.04 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.03 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.01 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.0 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.94 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.92 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.92 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.82 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.76 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.74 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.71 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.65 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.65 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.6 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.54 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.44 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.37 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.3 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.17 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.16 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.14 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.11 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.05 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.04 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.96 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.91 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.85 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.7 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.66 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.63 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.52 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.5 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.32 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.99 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.95 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.94 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.71 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.67 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.66 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.62 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.57 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.48 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.44 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.35 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.22 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.2 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.74 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.7 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.43 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.18 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 92.91 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.73 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 92.66 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 92.41 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.17 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.07 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.04 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 90.0 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.99 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.85 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 88.36 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 85.61 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-68 Score=647.94 Aligned_cols=564 Identities=21% Similarity=0.348 Sum_probs=486.4
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
.-+|++.|+|++|||||+ +||+|+.|++|+|||. +++.+. .+.+|.+.|++++|+|||+
T Consensus 12 L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg~ 70 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDGQ 70 (577)
T ss_dssp ECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTSS
T ss_pred ECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCCC
Confidence 346999999999999999 7899999999999995 566553 3889999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...|.+
T Consensus 71 ~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (577)
T 2ymu_A 71 TIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144 (577)
T ss_dssp EEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEEE
T ss_pred EEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCceee
Confidence 99999999999999964 45444 5889999999999999999 899999999999999777888888999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+.+++ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++ .++.|++||. +++.+..
T Consensus 145 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~v~~w~~-~~~~~~~ 216 (577)
T 2ymu_A 145 VAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS----DDKTVKLWNR-NGQLLQT 216 (577)
T ss_dssp EEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECT-TSCEEEE
T ss_pred eeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEc----CCCEEEEEeC-CCcEEEE
Confidence 99976 56789999999999999864 345556677888999999999999999988 4899999995 6778888
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+.+|.. .+.+++|+|++++|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+..
T Consensus 217 ~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 217 LTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp EECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 888877 8999999999999999999999999996 45666666644 4589999999999999999999999999853
Q ss_pred cCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCC
Q 001190 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1128)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 739 (1128)
.. ....
T Consensus 293 ~~--~~~~------------------------------------------------------------------------ 298 (577)
T 2ymu_A 293 GQ--LLQT------------------------------------------------------------------------ 298 (577)
T ss_dssp SC--EEEE------------------------------------------------------------------------
T ss_pred Cc--EEEE------------------------------------------------------------------------
Confidence 21 1100
Q ss_pred cceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc
Q 001190 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1128)
Q Consensus 740 vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1128)
+ .+|...|.+++|+|++..+++++.||.+++|++....
T Consensus 299 -----------------~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---------------------- 336 (577)
T 2ymu_A 299 -----------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---------------------- 336 (577)
T ss_dssp -----------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------
T ss_pred -----------------E---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------
Confidence 1 2277889999999999999999999999999864211
Q ss_pred cccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 001190 820 LMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1128)
Q Consensus 820 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~ 898 (1128)
+ ..+.+ |...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 ~--~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 L--QTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp E--EEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred e--EEEeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 0 01222 788999999999999999998 899999995 6788889999999999999999 999999999999999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
+||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... +....+ ..|. ..+.+++|+||+++|
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~-----~~~~-~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTL-----TGHS-SSVRGVAFSPDGQTI 482 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEE-----ECCS-SCEEEEEECTTSCEE
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEE-----cCCC-CCEEEEEEcCCCCEE
Confidence 9995 5778889999999999999999999999999999999999754 332222 2333 789999999999999
Q ss_pred EEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccC
Q 001190 979 LVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 979 ~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1057 (1128)
++++ |+.|++||. +++.+..+..| ...|++++|+|||++|++++.||.|+|||. +++.+..+.
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~----------- 546 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT----------- 546 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-----------
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-----------
Confidence 9975 899999995 57777777654 889999999999999999999999999996 678887777
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
+|...|.+++|+| |+++|++++.||+|++||
T Consensus 547 -~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 5677889999999 699999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-66 Score=624.19 Aligned_cols=575 Identities=13% Similarity=0.165 Sum_probs=460.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999999 678876 6799999998776543 3889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCCeEEEecCCCCCeE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+ +|++++.+ +.|++|| .+..+..+.+|...|+
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999998765432 225779999999999999999 67777755 4788888 5667788999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
+++|+|+. ...|++++.|++|++||....+....+..|...|.+++|+|+|++|++++ .|+.|++||+.+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE----CCCcEEEEECCCCcEee
Confidence 99998743 13699999999999999988877788899999999999999999999998 49999999999999988
Q ss_pred Eec-------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-CCCcceEEEcCCCCEEEEEEcC
Q 001190 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 579 ~~~-------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5665 899999999999999999999999999999998888764321 112344555 77899999999
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
+.+++|+..++. ....
T Consensus 304 ~~i~~~~~~~~~-~~~~--------------------------------------------------------------- 319 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQV--------------------------------------------------------------- 319 (611)
T ss_dssp CCEEEEETTTTE-EEEE---------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceE---------------------------------------------------------------
Confidence 999999975541 1100
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
+ .+|...|.+++|+|+|++|++++.|+.|++||+...
T Consensus 320 --------------------------~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 320 --------------------------R---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp --------------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred --------------------------E---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 1 238889999999999999999999999999986532
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE---eeCCCCCeeEEEEcCCCCCE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNI 887 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~ 887 (1128)
........ .|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++++
T Consensus 357 --------~~~~~~~~--~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 425 (611)
T 1nr0_A 357 --------ISNRVFPD--VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI 425 (611)
T ss_dssp --------CEEECSSC--SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred --------ceeeeccc--CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence 11111112 388899999999887555444499999999876543210 011234567899999 8877
Q ss_pred EEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 888 lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++..... .. ..|. ..+.
T Consensus 426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---~~-~~h~-~~v~ 495 (611)
T 1nr0_A 426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KT-IVHP-AEIT 495 (611)
T ss_dssp EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EE-EECS-SCEE
T ss_pred EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---ec-cCCC-CceE
Confidence 7776 467899998 344 44554 888999999999999999999999999999987643211 11 1232 7899
Q ss_pred EEEEcCCCCEEEEEe-cCeEEEEecCC-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE-E
Q 001190 968 RVQFNADQVRMLVVH-ETQLAIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-Y 1044 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~-d~~i~v~d~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~ 1044 (1128)
+++|+|||++|++++ |+.|++|++.+ ++.+.. .....|...|.+++|+|||++|++|+.|++|+|||+.++.... .
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence 999999999999976 99999999987 544332 1112358999999999999999999999999999999876321 2
Q ss_pred eCCCCCCCCcccCCCC-ccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1045 IAPSTYLSPSVLNGSQ-TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.. .+| ...+.+++|+| ++. |++++.||+|++|++.
T Consensus 575 ~~-----------~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IK-----------GAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ET-----------TSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hh-----------ccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 22 245 56789999999 566 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-62 Score=596.64 Aligned_cols=547 Identities=16% Similarity=0.219 Sum_probs=443.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
+|++.... ......+|.+.|++++|||||+ +||+|+.|++|+|||+.+++... ...+.+|.
T Consensus 43 l~~~~~~~-~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~-----------------~~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSLT-DTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHIL-----------------KTTIPVFS 103 (611)
T ss_dssp EEETTCSS-CCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCE-----------------EEEEECSS
T ss_pred EecCCCcc-cCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCccee-----------------eEeecccC
Confidence 77775422 2233346999999999999999 78999999999999997655331 12367899
Q ss_pred cceEEEEEccCCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
+.|.+++|+|||++||+++.+ +.|++|| +++... .+.+|.+.|++++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999865 3677777 455444 57899999999999999874 599999999999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcCCCCeEE
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~ 554 (1128)
.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+. .|...|.+++|+|+|++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888999999999999999977 67899999999999999998887776663 6888999999999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+++. |+.|++||+.+++.+..+..+... ....+.| ++..+++++.||.+++|+..+++....+.. |...|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYG--HNKAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECC--CSSCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcC--CCCCE
Confidence 9984 999999999999998888754321 2333444 678999999999999999999987776664 45589
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
.+++|+|++++|++++.|++|++||+.++.. ...+
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~-------------------------------------------- 362 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF-------------------------------------------- 362 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS--------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec--------------------------------------------
Confidence 9999999999999999999999999876521 1000
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
..+|...|.+++|++++ .+++++.|+.+++|+
T Consensus 363 -----------------------------------------------~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 363 -----------------------------------------------PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVP 394 (611)
T ss_dssp -----------------------------------------------SCSCSSCEEEEEECTTS-CEEEEETTTEEEEEC
T ss_pred -----------------------------------------------ccCCcceEEEEEECCCC-cEEEEEcCCceEEee
Confidence 01277789999999776 588999999999998
Q ss_pred ccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC
Q 001190 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (1128)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 872 (1128)
+......... .... ........++|+|||+.++++.++.+++|+ .++ +..+. |.
T Consensus 395 ~~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~ 448 (611)
T 1nr0_A 395 AGGSGVDSSK-----------------AVAN-----KLSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-IS 448 (611)
T ss_dssp SSSSSSCTTS-----------------CCEE-----ECSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CS
T ss_pred cCCccccccc-----------------eeee-----ecCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cC
Confidence 7543211000 0000 033456789999999999888899999999 344 45554 78
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-Ccc
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEK 949 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-~~~ 949 (1128)
..+.+++|+| |+++||+|+.|++|++||+.++.. +.. .+|...|++++|+|||++|++++.|++|++||+.+ ++.
T Consensus 449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 8899999999 999999999999999999987653 334 68999999999999999999999999999999987 433
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccc--cccccCCCC-CCCeEEEEEeeCCCEEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI--RQWTPQDAL-SAPISCAVYSCNSQLVFAT 1025 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~--~~~~~~~~h-~~~v~~l~~s~dg~~l~t~ 1025 (1128)
... .....|. ..|.+++|+|||++|++++ |+.|++|++.++... ..+ .+| ...|.+++|+||++ |+++
T Consensus 527 ~~~---~~~~~H~-~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 527 AHT---NSWTFHT-AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp SCC---CCCCCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TSSTTSCEEEEEEEETTE-EEEE
T ss_pred eee---eeeeecc-cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---ccCcccCeeEEEEcCCCE-EEEe
Confidence 211 0112233 7899999999999999976 999999999876532 232 245 78999999999999 9999
Q ss_pred ecCCcEEEEecC
Q 001190 1026 FCDGNIGVFDAD 1037 (1128)
Q Consensus 1026 ~~dg~i~vwd~~ 1037 (1128)
+.|++|++|++.
T Consensus 599 ~~D~~i~lW~~~ 610 (611)
T 1nr0_A 599 GQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEECC
T ss_pred cCCCCEEEEecc
Confidence 999999999973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-63 Score=658.98 Aligned_cols=618 Identities=14% Similarity=0.182 Sum_probs=509.0
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
...+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 3446999999999999999 789999999999999999987653 77899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 577999999999999965544899999999999999 8999999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------------CCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
++++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 9999977 6689999999999999999887665544322 23678899999999999986 67
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
.+.+||..++..+..+...+...+.+++|+|++..+++++.||.|++||+.++..+..+..+ ...|.+++|+|+++++
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEE
Confidence 89999999999988887444458999999999999999999999999999999998888755 4589999999999999
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCC
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1128)
++++.||.|++|++.+........ ......+.+.+++..++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------------------------------- 938 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIV--------LKQEIDVVFQENETMVL------------------------------- 938 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSS--------EEEEEEEEEETTEEEEE-------------------------------
T ss_pred EEEeCCCeEEEEEccccceeeeec--------ccceeeEEEcCCCcEEE-------------------------------
Confidence 999999999999987542111100 00111223333332221
Q ss_pred CCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCce
Q 001190 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1128)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~ 804 (1128)
..+..+.+.++... ...... .+...+.+++++|++.++++++.+|.+++|++...
T Consensus 939 ------~~~~~~~~~~~~~~----~~~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-------- 993 (1249)
T 3sfz_A 939 ------AVDNIRGLQLIAGK----TGQIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-------- 993 (1249)
T ss_dssp ------EEESSSSEEEEEES----SCCEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT--------
T ss_pred ------EecCCcceEEEecC----cceEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--------
Confidence 11111222222211 111111 14567999999999999999999999999986532
Q ss_pred eeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.... .+.+ |...|.+++|+|||+++++++ ||.|++||+.+++... +..|...|.+++|++
T Consensus 994 --------------~~~~-~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~- 1054 (1249)
T 3sfz_A 994 --------------RVFS-SGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ- 1054 (1249)
T ss_dssp --------------SCEE-ECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-
T ss_pred --------------ceee-eccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-
Confidence 1111 1222 888999999999999999998 8999999999988764 557999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
++ .+++++.||.|++||+.+++....+.+|.+.|++++|+|++++|++++.|++|++||+.+++....+ .+|.
T Consensus 1055 ~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----~~h~- 1127 (1249)
T 3sfz_A 1055 DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----KGHN- 1127 (1249)
T ss_dssp SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----CCCS-
T ss_pred CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----ccCC-
Confidence 65 5678999999999999999999999999999999999999999999999999999999998765443 2333
Q ss_pred CCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccccc------CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 964 TGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
..+.+++|+|||+++++++ |+.|++||+.+++.+..+.. ...|...|++++|+|||++|++++ |.|++||+
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~ 1205 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1205 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEEC
Confidence 7899999999999999976 89999999999988776521 134588999999999999999885 89999999
Q ss_pred CCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1037 DTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.+++.+..+. .|...+.+++|+| ++.+|++++.||.|++|++.+
T Consensus 1206 ~~g~~~~~~~------------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1206 ATGDSSQTFY------------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp SSCBCCCCCC------------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred CCCceeeeee------------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 9998866655 4455668899999 689999999999999999753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=587.27 Aligned_cols=533 Identities=21% Similarity=0.366 Sum_probs=456.5
Q ss_pred cccCCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|+. ..++..++. |...|++++|||||+ +||+|+.|++|+|||+ +++.+. .+.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~-------------------~~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEE-------------------EECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEE-------------------EEECC
Confidence 7763 445555555 999999999999999 7899999999999996 455543 27889
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
.+.|.+++|+|||++|++++.|+.+++|+....... ...+|...|..+.|+|++. .+++++.++.+++|+..+.
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 999999999999999999999999999998764322 4678999999999999999 7899999999999997788
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.......|...|.++++++ ++.++++++.||.|++||. ..+....+..+...|.+++|+|++++|++++ .++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS----DDKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEe----CCCE
Confidence 8888899999999999976 6689999999999999996 4566677888999999999999999999988 4899
Q ss_pred EEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++||. +++.+..+.. +...|.+++|+|++++++
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~--h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC--CSSCEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec--CCCCeEEEEECCCCCEEE
Confidence 999995 5678888888876 8999999999999999999999999996 4566666654 445899999999999999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+++.|+.|++|+..... ..
T Consensus 320 t~~~d~~i~~w~~~~~~--~~----------------------------------------------------------- 338 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQH--LQ----------------------------------------------------------- 338 (577)
T ss_dssp EEETTSCEEEEETTSCE--EE-----------------------------------------------------------
T ss_pred EEeCCCeEEEEeCCCCe--eE-----------------------------------------------------------
Confidence 99999999999964320 00
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
.+ .+|...+.+++|+|+|+++++++.||.+++|+...
T Consensus 339 ------------------------------~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------- 375 (577)
T 2ymu_A 339 ------------------------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------- 375 (577)
T ss_dssp ------------------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------
T ss_pred ------------------------------EE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------
Confidence 01 12777899999999999999999999999997431
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d 884 (1128)
..+. .+.+ |...|++++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 376 -------------~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 376 -------------QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------CEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------CEEE-EecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence 1111 1222 888999999999999999998 899999995 6788889999999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCC
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 964 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 964 (1128)
+++|++++.|++|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. +++....+ .+|. .
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-----~~h~-~ 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHS-S 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-----ECCS-S
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-----eCCC-C
Confidence 999999999999999996 56778889999999999999999999999999999999996 44443333 2333 7
Q ss_pred CccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 965 GDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 965 ~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
.+.+++|+|||++|++++ |+.|++||. +++.+..+..| ...|++++|+|||++|++++.|++|++||
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 899999999999999875 899999996 56777766654 89999999999999999999999999997
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=573.36 Aligned_cols=558 Identities=12% Similarity=0.203 Sum_probs=476.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC----ceecccccccccccccCccccceeccCCCcc-eEEEEEcc
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 416 (1128)
.|.+.|.+++|||||+ +||+|+ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 4888999999999999 677776 889999999987 4433 38889999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCC-----cceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCC
Q 001190 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1128)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~ 485 (1128)
+|++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999998651 1122335778999999999999999 78888877 6899999 778
Q ss_pred eEEEecCCCCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCC-CCeEEEeeecc
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~-g~~l~~~~~~~ 560 (1128)
.+..+.+|...|.+++|+++ +. ++++++.|+.|++||+...+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 89999999999999999874 44 899999999999999998888888888888 9999999999 999999884
Q ss_pred CCCceEEEEeCCCCceeeEe-c---cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC--CCCcce
Q 001190 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1128)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.+|++++.||.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 899999999999999998 5 5655 89999999 999999999999999999999999888876521 235667
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
+.|+ ++.++++++.||.|++||+.++ .....+.+ +..+|.+++| |+ +
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~-----~~~~v~~~~~-~~---l---------------------- 350 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISG-----HNKGITALTV-NP---L---------------------- 350 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECC-----CSSCEEEEET-TT---T----------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeC-----CCCCEEEEEe-cC---c----------------------
Confidence 7775 8899999999999999999875 34444443 3456777877 65 2
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeecc
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~ 794 (1128)
++++.|+.+++|++. .+. .+|...|.+++| +++..+++++.||.+++|++.
T Consensus 351 ---------------~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 351 ---------------ISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp ---------------EEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred ---------------EEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcc
Confidence 477888999999976 112 348999999999 778889999999999999865
Q ss_pred ccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC
Q 001190 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1128)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~ 874 (1128)
... ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...
T Consensus 402 ~~~--------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 448 (615)
T 1pgu_A 402 KHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP 448 (615)
T ss_dssp EEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred cCc--------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCC
Confidence 321 1225789999999999999888999999999999988887 8889
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEecccceee-ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 875 STFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
+.+++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 9999998 679999999 999999999998776 78889999999999999999999999999999999999875433
Q ss_pred eEEeecCCCCCCCccEEEEcC----------CCCEEEEEe-cCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCC
Q 001190 953 VTIHIPAGKTPTGDTRVQFNA----------DQVRMLVVH-ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 953 ~~~~~~~~~~~~~v~~v~~s~----------d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
........+.+++|+| ++++|++++ |+.|++||+.++ +.+..+..| ...|.+++|+||++
T Consensus 526 -----~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 526 -----RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST 597 (615)
T ss_dssp -----CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE
T ss_pred -----eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC
Confidence 2331237899999999 999999976 899999999988 566665544 89999999999999
Q ss_pred EEEEEecCCcEEEEecCC
Q 001190 1021 LVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~ 1038 (1128)
|++++.||.|++|++++
T Consensus 598 -l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 -LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -EEEEETTSCEEEEEEC-
T ss_pred -eEEecCCceEEEEeeec
Confidence 99999999999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=569.07 Aligned_cols=602 Identities=10% Similarity=0.092 Sum_probs=450.3
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 345568999999999999998 88999999999999987765432 234788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--------
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-------- 487 (1128)
|++|++++.|++|+|||+.+++.+.. +. |.+.|++++|+|+++ +|++|+.||+|++|| .+++..
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 88999999999999999999887663 43 778999999999999 899999999999999 555543
Q ss_pred ---EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------------------CCeEEEEEE
Q 001190 488 ---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLY 546 (1128)
Q Consensus 488 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~i~~~~~ 546 (1128)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||++.......+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 234679999999999874 34689999999999 9999988777666654 357999999
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeE--ec---cc------------cCCceeEEEEeC----CC-CEEEEEE
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVG 604 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~~s 604 (1128)
+|+|++|++++ .|+.|++||+.+++++.. +. .| +...|..++|++ ++ ..+++|+
T Consensus 220 spdg~~lasgs----~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIH----EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEE----TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEE----CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 99999999998 499999999999987654 21 22 123688999964 43 4566676
Q ss_pred CC-----CcEEEEECC------------------CCeeeEEEecCCCCCCcceEEEcC----------CCCEEEEEEcCC
Q 001190 605 ED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADN 651 (1128)
Q Consensus 605 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~~~~l~~~~~dg 651 (1128)
.| ..+.+|++. +.+....+.. .+...|..+.+.+ +...+++++.||
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 65 378899842 1222333322 1223577777654 345789999999
Q ss_pred cEEEEEcccCccccccccCC-ccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 652 GFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 652 ~i~iw~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
.|++|++.++.........+ ....+...|.+++|++....+....
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~---------------------------------- 420 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA---------------------------------- 420 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH----------------------------------
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH----------------------------------
Confidence 99999997763332221111 1223345677788776543321100
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
.+.++. ..| .+ .+|...+..++|+|+++.+++++.|++|++||+........
T Consensus 421 -~~~~~~-~~~--------------~l---~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--------- 472 (902)
T 2oaj_A 421 -LSAAQN-KDY--------------LL---KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--------- 472 (902)
T ss_dssp -HHTTBC-CCC--------------SC---CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------
T ss_pred -HhcccC-CCC--------------cc---cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------
Confidence 000000 000 11 34777788899999999999999999999999865421000
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc---------------------------
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF--------------------------- 862 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~--------------------------- 862 (1128)
..+... +...+ +..|...|.+++|+|||++||+|+ ||+|++||+.++
T Consensus 473 ~~~~~~----l~~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 473 ASFEVN----LSRTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp BCEEEE----HHHHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred ceEEee----chhhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 000000 00000 113889999999999999999998 899999999866
Q ss_pred ------------------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-----ccc-ccccCe
Q 001190 863 ------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLK-GHQKRI 918 (1128)
Q Consensus 863 ------------------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V 918 (1128)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 24677889999999999999 88 99999999999999998876543 454 899999
Q ss_pred eEEEEc-----CCC---CEEEEEcCCCcEEEEEC---CCCcccceeEEeecCCCCCCCccEEE-Ec--------------
Q 001190 919 TGLAFS-----TSL---NILVSSGADAQLCVWSI---DTWEKRKSVTIHIPAGKTPTGDTRVQ-FN-------------- 972 (1128)
Q Consensus 919 ~~l~~s-----~d~---~~l~s~~~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~-~s-------------- 972 (1128)
++|+|+ ||| ++|++++.|++|++||+ .+|+....+.-+....+. ..+..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~a~~~~~ 704 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK-GPIHKIDAFSKETKSSCLATIPKM 704 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS-CCCCEEEEEETTTCCBCBCBHHHH
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC-CceEEEEeEecCCCCcccCCHHHH
Confidence 999999 886 79999999999999999 777766655554433222 5555565 65
Q ss_pred --------CCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEE---E------EeeCCCEEEEEecCCcEEEEe
Q 001190 973 --------ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 973 --------~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l---~------~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++.. +++++..++||++.++++.+....+ ...+.++ . |+++|..|++++.||.|++|+
T Consensus 705 ~~l~~~~~~~~~~-l~~~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 705 QNLSKGLCIPGIV-LITGFDDIRLITLGKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp HGGGGTCCCCEEE-EEECSSEEEEECTTCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred hccCCCCCCCeEE-EEEeccceEEEeCccccceeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence 45544 4445889999999999887766433 4445554 5 789999999999999999999
Q ss_pred cCCCceEEEeCC
Q 001190 1036 ADTLRLRCYIAP 1047 (1128)
Q Consensus 1036 ~~~~~~~~~~~~ 1047 (1128)
+.+++.+.....
T Consensus 781 ~p~l~~~~~~~~ 792 (902)
T 2oaj_A 781 IPDFKEQMSEHI 792 (902)
T ss_dssp TTTCCEEEEEEC
T ss_pred CcchHHHhhccC
Confidence 999999998874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=604.86 Aligned_cols=569 Identities=16% Similarity=0.255 Sum_probs=465.6
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+|+ +|++|+.|++|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3578999999999999999999999999999999999998766 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99 89999999999999999999998777789999999999999999999999999999999999999999999999984
Q ss_pred ccCCCceEEEEeCCCCceeeEecccc------------CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||..++.....+..
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~- 837 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT- 837 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-
Confidence 8999999999988777664321 12577899999999999887 68999999999988877753
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
++...|.+++|+|+++++++++.||.|++|++.++. ....+.+
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~------------------------------------ 880 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCRG------------------------------------ 880 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEECC------------------------------------
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeecCC------------------------------------
Confidence 345589999999999999999999999999987762 2222221
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
|...|.+++|+|+|..+++++.||
T Consensus 881 --------------------------------------------------------h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 881 --------------------------------------------------------HLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp --------------------------------------------------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred --------------------------------------------------------CccceEEEEECCCCCEEEEEeCCC
Confidence 455555556666665555555566
Q ss_pred eeEeeeccccCCCCCCceee------------------eeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 787 VQKLWKWHRNEQNPSGKATA------------------SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.+++|++............. .....++...++.... .+...+.+++|+|+++++++
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY------LPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE------ECCSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE------cccCcEEEEEEcCCCCEEEE
Confidence 66666544321100000000 0001112222222211 14667999999999999999
Q ss_pred Ee-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC
Q 001190 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (1128)
Q Consensus 849 ~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 927 (1128)
++ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS
T ss_pred EcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC
Confidence 98 89999999999999999999999999999999 9999999999999999999999876 456899999999999975
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCC
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
.+++++.|+.|++||+.+++....+..+ . ..+.+++|+||++++++++ |+.|++||+.+++.+..+..+
T Consensus 1057 -~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~-~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h--- 1126 (1249)
T 3sfz_A 1057 -RLLSWSFDGTVKVWNVITGRIERDFTCH-----Q-GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH--- 1126 (1249)
T ss_dssp -EEEEEESSSEEEEEETTTTCCCEEEECC-----S-SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---
T ss_pred -cEEEEECCCcEEEEECCCCceeEEEccc-----C-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---
Confidence 5788999999999999998876554332 2 6789999999999999875 899999999999988777654
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcE
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV 1086 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i 1086 (1128)
...|++++|+|||++|++|+.||.|++||+.+++.+..+.+...... ...|...+.+++|+| |+.++++++ |.|
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~fs~-dg~~l~s~~--g~v 1200 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG---TATHGGWVTDVCFSP-DSKTLVSAG--GYL 1200 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC----------CCSCCCEEEECT-TSSCEEEES--SSE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc---ccccCceEEEEEECC-CCCEEEECC--CeE
Confidence 88999999999999999999999999999999988766532211111 124566789999999 688888885 899
Q ss_pred EEEcCCCCCC
Q 001190 1087 KVMEPSESEG 1096 (1128)
Q Consensus 1087 ~iWd~~~~~~ 1096 (1128)
++||+.+++.
T Consensus 1201 ~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1201 KWWNVATGDS 1210 (1249)
T ss_dssp EEBCSSSCBC
T ss_pred EEEECCCCce
Confidence 9999998875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=547.64 Aligned_cols=560 Identities=11% Similarity=0.111 Sum_probs=464.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC----Ccceeceeecccccc-eeEEEEec--CCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGA-VNDLAFAY--PNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-v~~l~fs~--d~~~~~l~s~s~d~ 475 (1128)
..|.+.|.+++|+|||++||+++ ++.|+|||+.++ +... .+.+|.+. |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 45889999999999999999998 789999999987 5554 58899999 99999999 999 899999999
Q ss_pred eEEEEe-cCC--------CeEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCceeeecCCCCeEE
Q 001190 476 LIKVWE-LSG--------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCT 542 (1128)
Q Consensus 476 ~i~vWd-~~g--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~ 542 (1128)
+|++|| .++ ..+..+.+|...|.+++|++ ++++|++++.+ +.|++|| .......+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 544 67788899999999999976 67899999987 6888887 5667778888999999
Q ss_pred EEEEcCCCC-eEEEeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCC-CCEEEEEECCCcEEEEECCCCe
Q 001190 543 TMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 543 ~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+++|+|++. .+++++ .++.|++||..+++.+..+.+|... .+.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVG----DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEE----TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEe----CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 677776 4899999999999999999987642 6899999999 9999999999999999999999
Q ss_pred eeEEEecC--CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccC
Q 001190 619 ILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1128)
Q Consensus 619 ~~~~~~~~--~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 696 (1128)
.+..+... .+...|.+++|+ ++++|++++.|+.|++||+.++ .....+..+. ......+..+.+. +
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~-~-------- 308 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDK-QQLGNQQVGVVAT-G-------- 308 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCT-TCGGGCEEEEEEE-E--------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCC-CcccCceeEEEeC-C--------
Confidence 88887221 334589999999 9999999999999999999877 3333333321 1112234444443 3
Q ss_pred CCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCc
Q 001190 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1128)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 776 (1128)
+..+++++.++.+++|++..... ...+. +|...|.+++| |+
T Consensus 309 -----------------------------~~~l~~~~~~g~i~~~d~~~~~~-----~~~~~---~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 309 -----------------------------NGRIISLSLDGTLNFYELGHDEV-----LKTIS---GHNKGITALTV-NP- 349 (615)
T ss_dssp -----------------------------TTEEEEEETTSCEEEEETTEEEE-----EEEEC---CCSSCEEEEET-TT-
T ss_pred -----------------------------CCeEEEEECCCCEEEEECCCCcE-----EEEEe---CCCCCEEEEEe-cC-
Confidence 34456788889999999865221 12233 48999999999 88
Q ss_pred ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEE
Q 001190 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (1128)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~ 855 (1128)
+++++.||.+++|++. .+. . .|...|.+++| +++..+++++ |+.|+
T Consensus 350 --l~~~~~dg~i~~w~~~-------------------------~~~---~--~~~~~v~~~~~-~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS-------------------------SMH---Q--DHSNLIVSLDN-SKAQEYSSISWDDTLK 396 (615)
T ss_dssp --TEEEETTSCEEETTTT-------------------------EEE---C--CCCSCEEEEEC-CSTTCCEEEETTTEEE
T ss_pred --cEEECCCCeEEEEEch-------------------------hhc---C--cccCceEEEEE-CCCcEEEEEeCCCCEE
Confidence 9999999999999753 000 1 38899999999 6667777776 89999
Q ss_pred EEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC
Q 001190 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 856 vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
+||+.+++... .+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++.
T Consensus 397 ~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~ 464 (615)
T 1pgu_A 397 VNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLE 464 (615)
T ss_dssp ETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEET
T ss_pred EEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeec
Confidence 99987665432 678999999 88888877 79999999999999888886 88999999999 889999999
Q ss_pred -CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 936 -DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 936 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
|+.|++||+.+++... .....+. ..+.+++|+|++++|++++ |+.|++||+.+++.+..+... |...|+++
T Consensus 465 ~d~~i~~~~~~~~~~~~----~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~ 537 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSF----DLKTPLR-AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAI 537 (615)
T ss_dssp TTSCEEEEETTEEEEEE----ECSSCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEE
T ss_pred CCCeEEEEECCCccccc----cccCCcc-CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEE
Confidence 9999999999864321 2233333 7899999999999999976 899999999999988776551 48999999
Q ss_pred EEee----------CCCEEEEEecCCcEEEEecCCC-ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1014 VYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1014 ~~s~----------dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
+|+| |+++|++++.||.|++||+.++ +.+..+. .|...+.+++|+| ++. |++++.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------~h~~~v~~l~~s~-~~~-l~s~~~ 603 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------------AHKDGVNNLLWET-PST-LVSSGA 603 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT------------SSTTCEEEEEEEE-TTE-EEEEET
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh------------cCccceEEEEEcC-CCC-eEEecC
Confidence 9999 9999999999999999999998 5666555 5677889999999 577 999999
Q ss_pred CCcEEEEcCCC
Q 001190 1083 DGSVKVMEPSE 1093 (1128)
Q Consensus 1083 dg~i~iWd~~~ 1093 (1128)
||.|++|++..
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=547.44 Aligned_cols=587 Identities=11% Similarity=0.099 Sum_probs=432.3
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..||.+.|++++|+|+|++||+|+.||+|+||+..+++... ...|...|++++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 55899999999999999999999999999999998765443 235888999999999 87 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-----------eeecCCCCeEEEEEEcCC
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----------VDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~i~~~~~s~~ 549 (1128)
.+++++..+. |.+.|++++|++ ++.+|++|+.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 8888888886 778999999977 6789999999999999999876543 123557789999999996
Q ss_pred C-CeEEEeeeccCCCceEEEEeCCCCceeeEeccc-----------------cCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 550 G-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-----------------RKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 550 g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
+ ..+++++ .++.| +||+++++.+..+..| +...|.+++|+|++.+|++++.||.|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 48899 9999999999888766 1236999999999999999999999999
Q ss_pred EECCCCeeeEEEec-----C-----------CCCCCcceEEEc----CCC-CEEEEEEcC-----CcEEEEEcccCcccc
Q 001190 612 WDMDNVNILTSTDA-----E-----------GGLPNLPRLRFS----KEG-NLLAVTTAD-----NGFKILANAIGLRSL 665 (1128)
Q Consensus 612 wd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----p~~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 665 (1128)
||+.+++.+..... + .+...|.+++|+ |++ .++++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999987764221 1 123368999995 443 567777665 3677887532100 0
Q ss_pred ccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (1128)
.+++.+....+|+
T Consensus 317 ----------------------------------------------------------------~~~s~~~~~~~~~--- 329 (902)
T 2oaj_A 317 ----------------------------------------------------------------SITSYEGMKNYYA--- 329 (902)
T ss_dssp ----------------------------------------------------------------GGCCHHHHHHHHH---
T ss_pred ----------------------------------------------------------------cccchhhhhhhhc---
Confidence 0000000000010
Q ss_pred EeeCCceeEEEecCCCCCcccEEEEEEec----------CcceEEEeeccceeEeeeccccCCCCC------------Cc
Q 001190 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTN----------SAVGLLALGSNGVQKLWKWHRNEQNPS------------GK 803 (1128)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~----------~g~~l~~~~~dg~i~lw~~~~~~~~~~------------~~ 803 (1128)
...... .+. .++...|..+.+.+ +...+++++.||.+++|++..+..... ..
T Consensus 330 ---~~~~~~-~~~--~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 330 ---NPKQMK-IFP--LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp ---SCSEEE-EEC--CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred ---CccceE-EEe--cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence 000000 000 01455677777654 334688888899999999854321000 00
Q ss_pred e----eeeeccceeccCCC--ccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEE----EE--ee-
Q 001190 804 A----TASAVPQHWLPSSG--LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM----TT--FM- 869 (1128)
Q Consensus 804 ~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~- 869 (1128)
. .......+|+.... ......+.+ |...+..++|+||+++|++|+ |++|++||+.++... .. +.
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKDYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCCCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCCCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 0 00011223332110 001113344 777888899999999999998 999999999887431 11 11
Q ss_pred ----CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce---------------------------------------
Q 001190 870 ----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------------------------- 906 (1128)
Q Consensus 870 ----~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------------------------- 906 (1128)
+|...|.+++|+| ++++||+|+.||+|+|||+.+++
T Consensus 482 ~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 7889999999999 99999999999999999998762
Q ss_pred ------eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC-CCCCCCccEEEEc-----CC
Q 001190 907 ------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFN-----AD 974 (1128)
Q Consensus 907 ------~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~s-----~d 974 (1128)
++..+.+|.+.|++|+||||| +||+|+.|++|+|||+.++..+....+.... +|. ..|.+++|+ ||
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~-~~V~sv~Fs~~~~~~D 638 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS-ACVTCIEFVIMEYGDD 638 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC-CCEEEEEEEEEECTTS
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc-cceEEEEEEEEecCCC
Confidence 367788999999999999999 9999999999999999886643222222232 444 789999999 88
Q ss_pred C---CEEEEEe-cCeEEEEec---CCcccccccccCC--CCCCCeEEEE-Ee----------------------eCCCEE
Q 001190 975 Q---VRMLVVH-ETQLAIYDA---SKMERIRQWTPQD--ALSAPISCAV-YS----------------------CNSQLV 1022 (1128)
Q Consensus 975 ~---~~l~~~~-d~~i~v~d~---~~~~~~~~~~~~~--~h~~~v~~l~-~s----------------------~dg~~l 1022 (1128)
| ++|++++ |++|++||+ .+|+....+..+. .|..+|.+++ |+ ++|.+|
T Consensus 639 g~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 639 GYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred CCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 6 7888875 999999999 7888777666543 2357787777 66 455555
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE---E------EecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV---A------AHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++ +..|+||++.+++...+.. .|...+..+ . |++ ++..|++++.||+|++|++.+
T Consensus 719 ~~~--~~~ir~~~~~~~k~~~k~~------------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 719 ITG--FDDIRLITLGKSKSTHKGF------------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp EEC--SSEEEEECTTCCCEEEEEC------------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTT
T ss_pred EEe--ccceEEEeCccccceeeEc------------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcc
Confidence 544 7889999999998887765 333444554 5 677 588999999999999999999
Q ss_pred CCCC
Q 001190 1094 SEGK 1097 (1128)
Q Consensus 1094 ~~~~ 1097 (1128)
.+..
T Consensus 784 l~~~ 787 (902)
T 2oaj_A 784 FKEQ 787 (902)
T ss_dssp CCEE
T ss_pred hHHH
Confidence 8753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=482.01 Aligned_cols=562 Identities=13% Similarity=0.151 Sum_probs=424.3
Q ss_pred EEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 338 ~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
...+ +|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 3344 4999999999999999 789999999999999999887643 778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~ 494 (1128)
+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999998765 5778999999999999999 799999999999999 655 6678889999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC-CeEEEEEEcC--CCCeEEEeeeccCCCceEEEEeC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
..|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++ .++.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC----TTSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe----CCCEEEEEEC
Confidence 99999999763 45799999999999999998887777766655 7899999999 999999987 4899999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC--EEEEEEc
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~ 649 (1128)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++++
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~- 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF- 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEEE-
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEEe-
Confidence 99999999998876 89999999999999999999999999999999888887654 4799999999987 355554
Q ss_pred CCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCc
Q 001190 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1128)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (1128)
++.+.+|++... ...+.++|+|+.++++........ . ..
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~----------~-------------~~ 330 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASD----------I-------------FT 330 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTC----------E-------------EE
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECccccccee----------e-------------ee
Confidence 677888887544 123577788877764332211000 0 00
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
.... ..|++.... ........+ ..+...+.+++|+|+|+++++++ +|.+.+|++...
T Consensus 331 ~~~~-----~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~------------- 387 (814)
T 3mkq_A 331 AVIR-----GNEEVEQDE-PLSLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW------------- 387 (814)
T ss_dssp EECC-----SCCCCCSSS-CBCCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-------------
T ss_pred eecc-----cccccccCc-cceeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-------------
Confidence 0000 001111000 000000111 12566789999999999888887 899999985321
Q ss_pred cceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCC---
Q 001190 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN--- 885 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~--- 885 (1128)
.. .+...+.+++|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++
T Consensus 388 ----~~-------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~ 441 (814)
T 3mkq_A 388 ----RN-------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFS 441 (814)
T ss_dssp ----EE-------------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEEC
T ss_pred ----cc-------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceec
Confidence 00 1345688999999999999998 899999963 345788899999999 77
Q ss_pred CEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEE------cCCCcEEEEECC--------------
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS------GADAQLCVWSID-------------- 945 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~------~~Dg~i~iwd~~-------------- 945 (1128)
.+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--.
T Consensus 442 ~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (814)
T 3mkq_A 442 GALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDD 518 (814)
T ss_dssp SSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBT
T ss_pred ceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCcc
Confidence 5788899999999999999999999988865 89999999999999 666655555421
Q ss_pred -CCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 946 -TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 946 -~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
.+........... ...+.+..|. +..++... .+.+..+. .+... .+... ..++..+.|.+++..++
T Consensus 519 ~~~~~~~~~~~~~~----~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~~~l~ 586 (814)
T 3mkq_A 519 SEGVDEAFDVLYEL----SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTY-NLAHY---TKEMYLLGYLARDNKVY 586 (814)
T ss_dssp TTBCTTTEEEEEEE----CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEE-EEEEC---SSCCEEEEEEGGGTEEE
T ss_pred ccchhhheeeeeEe----ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeE-EEEEC---CccEEEEEEEecCCEEE
Confidence 0000001111100 1335566665 33333333 34444432 12211 11111 45667777889999999
Q ss_pred EEecCCcEEEEecCC
Q 001190 1024 ATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~ 1038 (1128)
....++.+.+|++..
T Consensus 587 ~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 587 LADREVHVYGYEISL 601 (814)
T ss_dssp EECTTCCEEEEECCH
T ss_pred EEcCCCCEEEEEECc
Confidence 999999999999764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=469.76 Aligned_cols=574 Identities=14% Similarity=0.185 Sum_probs=420.5
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|.++|++++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999987666 5778999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcC-CCCeEEEe
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~-~g~~l~~~ 556 (1128)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||++.. .....+..|...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 89999999999999999999977 6689999999999999999887 45567788889999999999 88889888
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+ .++.|++||+.+++....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 160 ~----~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 160 C----LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp E----TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred e----CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 7 4899999999999988888888766899999999 99999999999999999999999988887554 47999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
++|+|+++++++++.||.|++||+.++ .....+.. +...+.+++++|+|..++
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~--------------------- 286 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV-----GLERSWCIATHPTGRKNY--------------------- 286 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC-----SSSSEEEEEECTTCGGGE---------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec-----CCCcEEEEEEccCCCceE---------------------
Confidence 999999999999999999999999886 33333333 234688888888876431
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE-eeec
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK-LWKW 793 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-lw~~ 793 (1128)
++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++..
T Consensus 287 ---------------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 287 ---------------IASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp ---------------EEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred ---------------EEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeeee
Confidence 1223334555555321 123467788888888776653211 1100
Q ss_pred cccCCCCCCceeeeeccceeccCCCcccccccc-CCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 872 (1128)
.....|+...+........ ...+...+.+++|+|||++++++++|.+.+|++...... +.
T Consensus 332 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~-----~~ 392 (814)
T 3mkq_A 332 --------------VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-----AF 392 (814)
T ss_dssp --------------ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----EE
T ss_pred --------------ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----CC
Confidence 0001223333322211110 012566789999999999999999999999998765443 23
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCCcc
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL---NILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~---~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 5688999999 999999999999999995 456788899999999998 6889999999999999999876
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEE------ecCeEEEEecCCccccccccc-----CCCCCCCeEEEEEeeC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTP-----QDALSAPISCAVYSCN 1018 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~-----~~~h~~~v~~l~~s~d 1018 (1128)
+.....+ ...++|+|||++++++ .++.+.++....+.....+.. ..........+. + -
T Consensus 464 ~~~~~~~---------~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 532 (814)
T 3mkq_A 464 VRRIDVN---------AKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY-E-L 532 (814)
T ss_dssp EEEESSC---------EEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE-E-E
T ss_pred EEEEecC---------CCEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee-E-e
Confidence 4443222 2289999999999998 666666664432221111100 000001111110 0 0
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+..+.++..++.+.+|....++......... ..+....+.. ..+.|.+ ++..++....++.++.|++..
T Consensus 533 ~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~-~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 533 SESITSGKWVGDVFIFTTATNRLNYFVGGKT---YNLAHYTKEM--YLLGYLA-RDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp CSCCSEEEEETTEEEEECTTSEEEEEETTEE---EEEEECSSCC--EEEEEEG-GGTEEEEECTTCCEEEEECCH
T ss_pred ccEEEeeEEeCCEEEEEcCCCeEEEEeCCee---EEEEECCccE--EEEEEEe-cCCEEEEEcCCCCEEEEEECc
Confidence 1112233334455555443332222111000 0000012333 3455667 578889999999999998753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=418.80 Aligned_cols=283 Identities=21% Similarity=0.378 Sum_probs=262.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|.++|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 6889999999999998 78999999999999999987654 388999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++|+.|++|++||+.++++++ ++.+|...|.+++|+|++. +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999987766 5789999999999999999 899999999999999 8999999999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC--------------------CCeEEEeeecc
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTSK 560 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------g~~l~~~~~~~ 560 (1128)
++++ ++.+|++++.|+.|++||+.+......+..|...|.+++|+|+ |.++++++
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--- 315 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--- 315 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---
Confidence 9866 6789999999999999999999988899999999999999997 66788887
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+
T Consensus 316 -~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~ 391 (410)
T 1vyh_C 316 -RDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSLDFHKT 391 (410)
T ss_dssp -TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEEEECSS
T ss_pred -CCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEEEEcCC
Confidence 499999999999999999999887 89999999999999999999999999999999998887654 47999999999
Q ss_pred CCEEEEEEcCCcEEEEEc
Q 001190 641 GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~ 658 (1128)
+++|++|+.||+|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=358.96 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=259.6
Q ss_pred cCCCcEEEEEEeCC----CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 342 HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspd----g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+|.+.|++++|+|+ +. +|++|+.|++|+|||+.+++... ...+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeee-----------------eeeeccCCCCEEEEEECCC
Confidence 59999999999985 44 78999999999999998765432 1237899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999988765 4678999999999999999 899999999999999 889999999999999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
|.+++|++ ++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++ .|+.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s----~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS----DDGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC----TTSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc----CCCeEEEEECCCcce
Confidence 99999977 678999999999999999999888888999999999999999999999998 489999999999999
Q ss_pred eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
...+.+|.. .|.+++|+|++.+|++++.||.|++||+.+++++..+..+ ...|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999987 8999999999999999999999999999999999888754 4589999999999999999999999999
Q ss_pred Ec
Q 001190 657 AN 658 (1128)
Q Consensus 657 ~~ 658 (1128)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=359.13 Aligned_cols=292 Identities=18% Similarity=0.278 Sum_probs=260.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.....++ +|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 3344444 5999999999999998 789999999999999998887643 677999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233346789999999999999885 88999999999999 8899999999
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+|.+.|.+++|++ ++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++ .|+.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s----~d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS----DDATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc----CCCcEEEEEC
Confidence 9999999999977 668999999999999999999988889999999999999999999999998 4899999999
Q ss_pred CCCceeeEecccc-CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 572 SEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 572 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
++++.+..+..+. ...+.+++|+|++++|++|+.||.|++||+.+++.+..+..| ...|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCC
Confidence 9998887775332 235889999999999999999999999999999988888755 4589999999999999999999
Q ss_pred CcEEEEE
Q 001190 651 NGFKILA 657 (1128)
Q Consensus 651 g~i~iw~ 657 (1128)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-39 Score=359.17 Aligned_cols=294 Identities=17% Similarity=0.247 Sum_probs=261.3
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
....++ +|.+.|+|++|+|||+ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 444555 5999999999999998 789999999999999988876543 5668889999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCc---ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
+|+|.+||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335678999999999999999 799999999999999 899999999
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
.+|...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877889999999999999999999988899999999999999999999999984 89999999
Q ss_pred CCCCceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+++++.+..+..+.. ..+.+++|+|++.+|++|+.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcC
Confidence 999888777765432 25788999999999999999999999999999988877654 458999999999999999999
Q ss_pred CCcEEEEE
Q 001190 650 DNGFKILA 657 (1128)
Q Consensus 650 dg~i~iw~ 657 (1128)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=354.64 Aligned_cols=299 Identities=21% Similarity=0.288 Sum_probs=258.7
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .+...+.+|...|.+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEEC
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEEC
Confidence 33444 49999999999998755899999999999999875432211 0123488999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~ 495 (1128)
|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++.+..+.+|..
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~ 149 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHND 149 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence 999999999999999999999998665 5789999999999999999 89999999999999988889999999999
Q ss_pred CeEEEeccCCC----CccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 496 PVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 496 ~v~~~~~~~~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.|.++++.+.. ++.++++++.|+.|++||++.......+..|...|.+++|+|+|++|++++ .|+.|++||+
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~----~dg~i~iwd~ 225 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG----KDGEIMLWNL 225 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE----TTCEEEEEET
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEEC
Confidence 99999998743 355899999999999999998888888899999999999999999999998 4999999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC------CCCCCcceEEEcCCCCEEE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~ 645 (1128)
.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+... .+...+.+++|+|||++|+
T Consensus 226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 9999999888653 69999999999998888755 5999999988877766432 1234578999999999999
Q ss_pred EEEcCCcEEEEEcccC
Q 001190 646 VTTADNGFKILANAIG 661 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (1128)
+|+.||.|++|++.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=351.53 Aligned_cols=290 Identities=18% Similarity=0.308 Sum_probs=252.3
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
...++ +|.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+.. +.+|..+|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 34445 4999999999999998 789999999999999998876643 77899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h 493 (1128)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999998766 5789999999999999999 899999999999999 666 455788999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEcC--CCCeEEEeeeccCCCceEEEEe
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++ .|+.|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s----~D~~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE----TTSEEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc----CCCeEEEEe
Confidence 999999999874 45799999999999999998877666554 4456889999987 778899988 499999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC--EEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~ 648 (1128)
+++++++..+.+|.. .+.+++|+|++.+|++|+.||.|++||..+++....+..+ ...+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence 999999999999987 8999999999999999999999999999999999888754 34789999999875 577777
Q ss_pred cCCcEEEEEccc
Q 001190 649 ADNGFKILANAI 660 (1128)
Q Consensus 649 ~dg~i~iw~~~~ 660 (1128)
.+ .+.+|++..
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 55 466777643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=364.80 Aligned_cols=301 Identities=17% Similarity=0.267 Sum_probs=260.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
..+..++ +|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 3445555 4999999999999998 789999999999999998876643 778999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1122357799999999999998654 699999999999999 8888887
Q ss_pred Ee-----cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 489 NF-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 489 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+ .+|...|.+++|++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|+|+++++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 689999999999753 567999999999999999984 4566778889999999999999999999984
Q ss_pred CceEEEEeCCCCceeeEeccccC------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec--CCCCCCcce
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPR 634 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 634 (1128)
|+.|++||+++++.+..+..+.. ..+.+++|+|++++|++|+.||.|++||..+++.+..+.. .+|...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999888876533 2478999999999999999999999999999988777632 345668999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++++|++|+.|++|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=363.31 Aligned_cols=285 Identities=19% Similarity=0.310 Sum_probs=259.4
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++..+ ++.+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 77899999999999999999999999999999999998766 5889999999999999999 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||++++.....+..|...|.++.++|+|.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 88899999999999999999987 5679999999999999999999998899999999999999999999999984
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC--------------------CCEEEEEECCCcEEEEECCCCeee
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.+|++|+.||.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999999887 8999999986 678999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
..+..|. ..|.+++|+|++++|++++.||.|++||+.++. ....
T Consensus 332 ~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~--------------------------------- 375 (410)
T 1vyh_C 332 MTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKT--------------------------------- 375 (410)
T ss_dssp EEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEE---------------------------------
T ss_pred EEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEE---------------------------------
Confidence 8887554 479999999999999999999999999986541 1111
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
+ .+|...|.+++|+|++.+|+
T Consensus 376 --------------------------------------------------------~---~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 376 --------------------------------------------------------L---NAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp --------------------------------------------------------E---ECCSSCEEEEEECSSSSCEE
T ss_pred --------------------------------------------------------E---cCCCCcEEEEEEcCCCCEEE
Confidence 0 12788899999999999999
Q ss_pred EeeccceeEeeec
Q 001190 781 ALGSNGVQKLWKW 793 (1128)
Q Consensus 781 ~~~~dg~i~lw~~ 793 (1128)
+++.||.|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=350.63 Aligned_cols=302 Identities=17% Similarity=0.242 Sum_probs=247.5
Q ss_pred ceEEee-cCCC-cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 336 TVAVSL-HQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 336 ~~~~~~-~h~~-~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.+..++ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 344445 4877 999999999999 789999999999999987754321 122578999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFN 489 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~ 489 (1128)
|+|+|++||+|+.|++|++||+.++.. .....+.+|...|++++|+|+++ +|++|+.|++|++|| .++. .+..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 22336889999999999999999 899999999999999 5543 4567
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
+.+|...|.+++|+| ++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+|++|++++ .|+.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s----~D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS----DDRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe----CCCeEE
Confidence 889999999999987 567999999999999999987653 356788889999999999999999998 499999
Q ss_pred EEeCCCC---------------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee----e---EEEec
Q 001190 568 EWNESEG---------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI----L---TSTDA 625 (1128)
Q Consensus 568 ~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~----~---~~~~~ 625 (1128)
+|+.... +++..+.+.+...|..++|++++..|++++.|+.|++|+...+.. . .....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 9996321 334556664555899999999999999999999999999876431 1 11122
Q ss_pred CCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCcc
Q 001190 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
.+|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 3556689999999987 5999999999999999987743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=356.13 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=239.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeec------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 5999999999999999 7899987 678999998777654321 11255789999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 6778999999999988765322 23458999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCC-eEEEeeeccCCCceEEEEe
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd 570 (1128)
...|++++|++..+ .++++++.||.|++||+++++....+. .+...+.+++|+|++. ++++++ .++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~----~d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD----ETGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE----SSSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee----cccceeEEE
Confidence 99999999987543 478999999999999998877665443 4556899999999865 566665 488999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~ 648 (1128)
+++++.+..+.+|.. .|.+++|+|++ ++|++|+.||.|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 4556899999998 899999999
Q ss_pred cCCcEEEEEcccC
Q 001190 649 ADNGFKILANAIG 661 (1128)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1128)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=346.08 Aligned_cols=287 Identities=14% Similarity=0.273 Sum_probs=255.8
Q ss_pred ccCCCcceEEEEEccC----CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6689999999999985 679999999999999999876532 2335789999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
++|| .+++.+..+..|...+.+++|+| ++++|++++.||.|++|+++.......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999977 67899999999999999999999988898899999999999999999999
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+.+++....+..+ ...|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 84 89999999999999999999887 8999999999999999999999999999999988887754 45799999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1128)
|+|++++|++++.|++|++||+.++. ....
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~------------------------------------------------- 285 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRT-CVHT------------------------------------------------- 285 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTE-EEEE-------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCE-EEEE-------------------------------------------------
Confidence 99999999999999999999987652 1111
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
+ .+|...|.+++|+|++..|++++.||.|++||.
T Consensus 286 ----------------------------------------~---~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 286 ----------------------------------------F---FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------------------------------E---CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------------------------------E---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 1 127788999999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=345.94 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=255.9
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|.+++|+|||++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~i 123 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999988665 5778999999999999999 8999999999999
Q ss_pred Ee-cCC----CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 480 Wd-~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
|| .++ .....+.+|.+.|.++.|++ ++ .+++++.|++|++||++++.....+..|...|.+++|+|++++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 99 444 34577889999999999965 33 589999999999999999988888999999999999999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+........|.+
T Consensus 201 sg~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 201 SGAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 9884 99999999999999999999887 899999999999999999999999999999988887765555557999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
++|+|++++|++|+.|+.|++||+.++.. ..
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~------------------------------------------------ 306 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADR-AG------------------------------------------------ 306 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCE-EE------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcE-ee------------------------------------------------
Confidence 99999999999999999999999865411 10
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
.+ .+|...|.+++|+|+|.+|++++.||.|++||
T Consensus 307 -----------------------------------------~~---~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 -----------------------------------------VL---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------------------------------EE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------------------------------Ee---ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 01 22888999999999999999999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=347.39 Aligned_cols=295 Identities=13% Similarity=0.136 Sum_probs=233.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc-cccccccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL-LMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+...|.+++|+|||++|++++ |+++++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 667899999999999777665 88899997421 112111110 0000011112567899999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEE----eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~----~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
|+.+ ++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~~l-~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERGI-LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTEE-EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCeE-EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9754 5555 99999999998875443 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CCEEEEEe-cCeEEEEecCC
Q 001190 917 RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASK 993 (1128)
Q Consensus 917 ~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~-d~~i~v~d~~~ 993 (1128)
.|++++|++++. +|++++.|++|++||+.+++....+... .....+.+++|+|+ +.++++++ |+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 7899999999999999998765443222 12256889999995 56777765 89999999999
Q ss_pred cccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 994 MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
++.+..+..| ...|++++|+||| ++|++|+.|++|+|||+.++++.. +. +|...|.+++|+|+
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~------------~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ------------AHRDFVRDATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC------------CCSSCEEEEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec------------CCCCCEEEEEEeCC
Confidence 9998888765 8899999999998 589999999999999999987653 33 56677899999997
Q ss_pred CCCEEEEEECCCcEEEEcCCCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+..+|++||.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 66688899999999999998754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=353.39 Aligned_cols=317 Identities=16% Similarity=0.206 Sum_probs=234.2
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
+.++.+.....|++.... ...|...|.+++|+|||++|++++.|. +++||- .
T Consensus 20 ~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~ 71 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------S 71 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------E
T ss_pred EecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------e
Confidence 444445677888765211 134899999999999999999998753 344542 2
Q ss_pred cceeccCCCcccccc-ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEE----EeeCCCCCeeEEEEcCCC
Q 001190 810 PQHWLPSSGLLMAND-VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT----TFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~s~~d 884 (1128)
+.+|+..++...... .....|...|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+| +
T Consensus 72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d 150 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-D 150 (357)
T ss_dssp EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-S
T ss_pred EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-C
Confidence 334444444322111 111237888999999999988877679999999999887543 3447999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
+++|++|+.||+|++||+.+++.+..+.+|...|++++|++++. ++++++.|+.|++||+.+++....... ....
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~ 226 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASD 226 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----cccc
Confidence 99999999999999999999999999999999999999999875 789999999999999998876543322 1222
Q ss_pred CCccEEEEcCCC-CEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecCCCc
Q 001190 964 TGDTRVQFNADQ-VRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 964 ~~v~~v~~s~d~-~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
..+.+++|+|++ .++++++ |+.|++||+.+++.+..+..+ ...|.+++|+|++ ++|++|+.||+|+|||+++++
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 678999999985 5677765 899999999999988877665 7899999999987 589999999999999999998
Q ss_pred eEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1041 LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.+..+ +|...|.+++|+|.++.+|++|+.||+|++|++.+..
T Consensus 304 ~~~~~-------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 304 VFRDL-------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEC-------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeEEC-------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 76543 3556789999999789999999999999999997653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=342.59 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=239.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccccccccc-CccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC-SLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.|...|.+++|||||+ +|++|+ |+++++||..... |+.... ...........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 4677899999999999 777776 7888888743211 100000 0000111233467889999999985 6
Q ss_pred EEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|.+.|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998876543 23568999999999999999 899999999999999 89999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCc
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
+++|++.. ..+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++ .|+.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~----~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD----ENGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE----TTSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec----cCCcEEEEECCCCc
Confidence 99998753 2588999999999999999888776654 445579999999965 4566666 48999999999999
Q ss_pred eeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i 653 (1128)
++..+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.++++.. +. +|...|.+++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578999999999999999998654 33 5566899999999876 67799999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=356.09 Aligned_cols=328 Identities=14% Similarity=0.194 Sum_probs=262.4
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEc----cCCCc------ceec-eeec------ccccceeEEEEecCC
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSND------LRQH-SQID------AHVGAVNDLAFAYPN 463 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~----~~~~~------~~~~-~~~~------~h~~~v~~l~fs~d~ 463 (1128)
...|.+.|++++|+|+|+ +||+|+.||.|++||+ .+++. ...+ ..+. +|.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 88772 2211 1122 268899999999999
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCe---
Q 001190 464 KLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW--- 540 (1128)
Q Consensus 464 ~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~--- 540 (1128)
+ +|++|+.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.++.....+..+...
T Consensus 121 ~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 N--SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp S--EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred C--EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9 89999999999999988999999999999999999977 6689999999999999999988888777777665
Q ss_pred ------------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCc
Q 001190 541 ------------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1128)
Q Consensus 541 ------------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 608 (1128)
+.+++|++++. +++++ .++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPG----PKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEEC----GGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEc----CCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence 89999999865 55555 388999999998877777766554 5666666666666666666666
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
|++||+.+++.+..+.
T Consensus 271 i~i~d~~~~~~~~~~~---------------------------------------------------------------- 286 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFY---------------------------------------------------------------- 286 (425)
T ss_dssp EEEECSSSBSCSEEEC----------------------------------------------------------------
T ss_pred EEEEECCCCccceEec----------------------------------------------------------------
Confidence 6666554331000000
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.|...|.+++|+|++ ++++
T Consensus 287 ------------------------------------------------------------~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 287 ------------------------------------------------------------GHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTT-EEEE
T ss_pred ------------------------------------------------------------CCCccEEEEEECCCC-EEEE
Confidence 044557777888887 6666
Q ss_pred Ee-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--------------------e
Q 001190 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------V 907 (1128)
Q Consensus 849 ~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~ 907 (1128)
++ |+.|++||+.+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE
T ss_pred EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 66 78888888888888888888999999999999 89999999999999999999988 8
Q ss_pred eeccccccc--CeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001190 908 KSKLKGHQK--RITGLAFSTSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 908 ~~~l~~h~~--~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+..+.+|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 899999977 99999999999999999999999999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=334.18 Aligned_cols=290 Identities=18% Similarity=0.293 Sum_probs=255.0
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+..++ +|.+.|++++|+|+|+ +|++|+.||.|+||++.+++... .+.+|...|.+++|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~ 74 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWS 74 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEEC
T ss_pred eEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEc
Confidence 34444 5999999999999999 78999999999999998887654 277899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+..|.
T Consensus 75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 75 SDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 999999999999999999999988665 5779999999999999999 899999999999999 8899999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+|.+++|++ ++.++++++.||.|++||+.+......+. .+...+..++|+|+++++++++ .++.|++||+.+
T Consensus 150 ~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~ 223 (312)
T 4ery_A 150 DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDYSK 223 (312)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE----TTTEEEEEETTT
T ss_pred CcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc----CCCeEEEEECCC
Confidence 9999999976 66899999999999999999887766554 4456899999999999999988 489999999999
Q ss_pred CceeeEeccccCCc--eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE--c
Q 001190 574 GTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--A 649 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~ 649 (1128)
++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++++++++ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALEN 301 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTT
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccC
Confidence 99999999887632 222233467889999999999999999999998888755 44799999999999999997 6
Q ss_pred CCcEEEEEcc
Q 001190 650 DNGFKILANA 659 (1128)
Q Consensus 650 dg~i~iw~~~ 659 (1128)
|+.|++|+.+
T Consensus 302 d~~i~~W~~d 311 (312)
T 4ery_A 302 DKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECC
T ss_pred CccEEEecCC
Confidence 9999999863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=355.02 Aligned_cols=299 Identities=14% Similarity=0.213 Sum_probs=248.9
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEc----cCCce------ecccccccccccccCccccceeccCCCc
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1128)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ...... .........+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH---------PFALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC---------CCCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc---------cccccccccCCCC
Confidence 3344578999999999999856799999999999999 88773 211000 0000011234788
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
.|++++|+|+|++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence 999999999999999999999999999 4555444 5778999999999999999 899999999999999 88999
Q ss_pred EEEecCCCCC---------------eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 487 LFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 487 ~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
+..+..+... +.+++|++. ..+++++.||.|++||+........+..+...|.+++|+|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 9999888777 888898763 4689999999999999999888888888999999999999999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++++++ .++.|++||+.+++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..
T Consensus 261 ~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~ 332 (425)
T 1r5m_A 261 LLLSAS----DDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VP 332 (425)
T ss_dssp EEEEEE----TTSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CC
T ss_pred EEEEEc----CCCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--cc
Confidence 999988 489999999999999999988876 89999999999 99999999999999999999988887654 47
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
|.+++|+|++++|++++.||.|++|++.++.
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999999998763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=334.51 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=224.7
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|.+++|+|+|++||+|+.||+|++||+.++..++ .+.+|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 3588999999999999999999999999999999999987665 5778999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcC-CCCeEEEe
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~-~g~~l~~~ 556 (1128)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++|+.||+|++||++.... ...+..|...|.+++|+| ++..++++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 89999999999999999999987 568999999999999999987644 456788999999999999 67888888
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+ .|+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+.+++.+..+..|. ..|.+
T Consensus 160 s----~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 160 C----LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp E----TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred e----CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 8 4999999999988887777766655788888886 67899999999999999999999999888654 48999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++++|++++.||+|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=340.39 Aligned_cols=294 Identities=17% Similarity=0.284 Sum_probs=241.8
Q ss_pred cCCCcEEEEEE-----eC-CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 342 HQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 342 ~h~~~V~~v~f-----sp-dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+|.+.|++++| +| ||+ +|++|+.|++|+|||+.+++.... .......+.+|...|.+++|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLALS 85 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEEEC
T ss_pred cchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEEEC
Confidence 59999999999 77 887 889999999999999976543210 001223488999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec---C
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE---G 492 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~---~ 492 (1128)
|++.+|++|+.|++|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|++|++||..+....... +
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 160 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEKEN 160 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecccC
Confidence 999999999999999999999988665 5789999999999999999 8999999999999995566555544 7
Q ss_pred CCCCeEEEeccCCCC--------ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 493 HEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++ .|+
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs----~dg 235 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG----KDK 235 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE----TTC
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc----CCC
Confidence 899999999987532 268999999999999994 4455667788999999999999999999998 499
Q ss_pred eEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE--EEec---------CCCCCCc
Q 001190 565 FLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLPNL 632 (1128)
Q Consensus 565 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~---------~~~~~~v 632 (1128)
.|++||+.. ......+.. . ..+.+++|+|++.+++ ++.|+.|++||+.+++... .+.. .++...|
T Consensus 236 ~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp EEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred eEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 999999944 444444432 2 2699999999988765 5568889999998876544 3321 1455578
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+++|+|++++|++|+.||.|++|++.++
T Consensus 313 ~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 313 TSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=347.30 Aligned_cols=307 Identities=17% Similarity=0.255 Sum_probs=248.5
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
+...++|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 445668999999999999999 778875 789999999998876431100000 00000000011123445699999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
||++||+|+.|+.|+|||+.+++.+. .+.+|...|++++|+|+++ +|++|+.|++|++|| .+++....+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999987655 5789999999999999999 899999999999999 7888777776 566
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+.+++|++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999763 5689999999999999999887766555 467789999999999999999984 999999
Q ss_pred EeCCCC------------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
||+.+. .+...+.+|.. .+.+++|++++.+|++|+.||.|++||..+++.+..+..|. ..|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEE
Confidence 999763 34567778876 79999999999999999999999999999999988887554 4799999
Q ss_pred EcC------CCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSK------EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp------~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|++ ++++|++|+.||+|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 876 688999999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=339.69 Aligned_cols=287 Identities=14% Similarity=0.175 Sum_probs=254.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 388999999999999999999999999999999999887655 4668999999999999999 89999999999999
Q ss_pred e-cCC------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC--CCC
Q 001190 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (1128)
Q Consensus 481 d-~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~--~g~ 551 (1128)
+ ..+ .....+.+|.+.|.+++|++ ++..|++++.|++|++||++++.....+..|...|.+++++| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9 322 24567788999999999976 567999999999999999999999889999999999999987 578
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++.+|++++.|+.|++||+..++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999884 89999999999999999999887 899999999999999999999999999999988877765555456
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1128)
+.+++|+|++++|++|+.|+.|++||+.++.. ..
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~--------------------------------------------- 320 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VS--------------------------------------------- 320 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EE---------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EE---------------------------------------------
Confidence 88999999999999999999999999866521 10
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEee
Q 001190 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1128)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw 791 (1128)
.+ .+|.+.|.+++|+|+|++|++++.||.|++|
T Consensus 321 --------------------------------------------~l---~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 321 --------------------------------------------IL---FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --------------------------------------------EE---CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --------------------------------------------EE---ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 01 2388899999999999999999999999999
Q ss_pred e
Q 001190 792 K 792 (1128)
Q Consensus 792 ~ 792 (1128)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=338.28 Aligned_cols=212 Identities=16% Similarity=0.237 Sum_probs=176.0
Q ss_pred eccCCCc-ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 401 IFKDVPI-SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 401 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
.+.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|++++|+|+|+ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4778987 999999999999999999999999999998764433323468999999999999999 8999999999999
Q ss_pred Ee-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 480 WE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
|| ..+ +.+..+.+|...|.+++|++ ++++|++++.|++|++||++.....
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~------------------------- 140 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY------------------------- 140 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE-------------------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe-------------------------
Confidence 99 554 35678899999999999977 6689999999999999988543210
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
..+..+.+|.. .+.+++|+|++++|++++.|+.|++||..+++........++...|.+++
T Consensus 141 ------------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 141 ------------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp ------------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ------------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 01122334544 78889999999999999999999999998887554444445666899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|+|++++|++++.|++|++|+...
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEecccc
Confidence 999999999999999999999643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.58 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=230.5
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceec-c-CCCcceEEEE
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVA 413 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~ 413 (1128)
+...+ +|.+.|++++|+|+ +||+|+.|++|+|||+.++.... . ..+ . +|...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~----------------~-~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL----------------I-DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE----------------E-EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE----------------E-EEEecCCccCCEEEEE
Confidence 34444 49999999999998 68999999999999998753211 0 113 3 4999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCC----cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec-CC----
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG---- 484 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~-~g---- 484 (1128)
|+|++++||+|+.|++|+|||+..+. .......+.+|.+.|++++|+|+|+ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1223346789999999999999999 8999999999999993 32
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC--CceeeecCCCCeEEEEEEcCC--CCeEEEeeecc
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSK 560 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~ 560 (1128)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--- 218 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--- 218 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE---
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe---
Confidence 45678899999999999987 5689999999999999998765 455678889999999999999 67888887
Q ss_pred CCCceEEEEeCCCC--------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--eEEEecCCCCC
Q 001190 561 DGDSFLVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP 630 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~ 630 (1128)
.|+.|++||+.++ .....+.+.+...|.+++|++++ .|++++.||.|++|+..+++. .... ..++..
T Consensus 219 -~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 219 -DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp -TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred -CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 4899999998765 34555555334489999999654 899999999999999988753 2222 233444
Q ss_pred -CcceEEEcC--CCCEEEEEEcCCcEEEEEccc
Q 001190 631 -NLPRLRFSK--EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 631 -~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.|.+++|+| ++++|++|+.||+|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 789999999 789999999999999999764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=361.16 Aligned_cols=295 Identities=16% Similarity=0.270 Sum_probs=247.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEe----------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~g----------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
+.+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... .....|...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~ 71 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFN 71 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEE
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceE
Confidence 34556799999999998789999 8899999999988763210 01335889999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCC--
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR-- 485 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~-- 485 (1128)
+++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence 999999999999999999999999987211 1122357799999999999998 67 799999999999999 6665
Q ss_pred ----eEE---EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------CCeEEEEEEcCCC-C
Q 001190 486 ----KLF---NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-S 551 (1128)
Q Consensus 486 ----~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~i~~~~~s~~g-~ 551 (1128)
... .+.+|...|.+++|+++ .+.+|++++.||.|++||++..+....+..+ ...+.+++|+|++ .
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred cccccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 332 34679999999999874 2579999999999999999998888777776 6789999999998 4
Q ss_pred eEEEeeeccCCCc---eEEEEeCCCC-ceeeEec-cccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 552 RLFSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 552 ~l~~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
++++++. ++ .|++||++++ +.+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus 229 ~l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 229 RVATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp EEEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred EEEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 6777663 55 9999999987 6677777 7766 899999999 899999999999999999999999988886
Q ss_pred CCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCc
Q 001190 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
+. ..|.+++|+|++ .+|++++.|+.|++|++.+..
T Consensus 304 ~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SS--SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CC--CceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 54 479999999998 899999999999999998763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=381.25 Aligned_cols=554 Identities=13% Similarity=0.077 Sum_probs=393.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+...+.+.+|||+ .||..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~---~iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD---RIIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT---EEEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC---EEEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567999999964 3455443 789999998876432 677999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCCcceeceeecccccce-------eEEEEecCCCeEEEEEecCC------CeEEEEecC
Q 001190 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1128)
Q Consensus 423 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~l~fs~d~~~~~l~s~s~d------~~i~vWd~~ 483 (1128)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999998763 2 477888888 9999999998 67777754 468888844
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEec------------cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
+.....+..+. ...++|++ | ++++++. +...++|.....+....+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445554443 34566765 5 7887653 345677755444555566788889999999988 3
Q ss_pred eEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC---
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1128)
.++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++|+++ .++.|++|++...... .+..+.
T Consensus 216 l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES 287 (1045)
T ss_dssp EEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB
T ss_pred EEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccc
Confidence 334433 356667776543 34445555554 35667999999998887 4899999999554433 443221
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 628 ------~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
+...+..++|+ |||+.|++++ ++.|++|+..++.. . .+
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~-~~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-L-KV-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-E-EC--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-E-Ec--------------------------------
Confidence 12258899999 9999999888 78899998765410 0 00
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcc-cEEEEEEecCcceE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 779 (1128)
..+.. .+..++|+ ||+.+
T Consensus 333 ------------------------------------------------------------~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ------------------------------------------------------------PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ------------------------------------------------------------SCCSCEEEEEECSS-SEEEE
T ss_pred ------------------------------------------------------------cCCCcceEEeeeEc-CCCeE
Confidence 01344 67888999 99989
Q ss_pred EEeeccceeE-eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEE
Q 001190 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1128)
Q Consensus 780 ~~~~~dg~i~-lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw 857 (1128)
+.++.++.+. +|++.. +.... +.+ +...+..++|||||++|++++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8888877676 776432 22111 112 667899999999999999988 7899999
Q ss_pred ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----------cEEEEecccceeeecccccccCeeEEEEcCCC
Q 001190 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (1128)
Q Consensus 858 d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 927 (1128)
|+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ ...+..|...+..++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 999998887654 89999999887 66788888889999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE--EEEe--cCeEEEEecCCcc-ccccccc
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM--LVVH--ETQLAIYDASKME-RIRQWTP 1002 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l--~~~~--d~~i~v~d~~~~~-~~~~~~~ 1002 (1128)
++|++++.++...+|+....... .. + ...+..+.+++++... +... +.....|++.... .+..+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~ 554 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRVVLNFS------FE--V-VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 554 (1045)
T ss_dssp CEEEEEESCCCCCEECSSSSCEE------CC--S-CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred CEEEEEecccCCcCcchhccccc------cc--c-CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCC
Confidence 99999999999999987643210 00 0 1223344445444332 2211 1111235544311 1222222
Q ss_pred CCCCCCCeEEEEEeeCCCEEEE-------------EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEE
Q 001190 1003 QDALSAPISCAVYSCNSQLVFA-------------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1069 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1128)
|...+..++++|||+++++ ......|++||+.+++..... ..+..++|
T Consensus 555 ---~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------~~v~~~~~ 615 (1045)
T 1k32_A 555 ---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----------------NNLTDLRL 615 (1045)
T ss_dssp ---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----------------EEEEEEEE
T ss_pred ---CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----------------cCcceEEE
Confidence 3678999999999997775 123557899999998854322 23467899
Q ss_pred ecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1070 HPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1070 ~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+| |+..|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 79999998876 89999998876
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=348.88 Aligned_cols=295 Identities=17% Similarity=0.196 Sum_probs=251.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999987665 5789999999999999999 89999999999999
Q ss_pred e-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-----cCCCCeEEEEEEc
Q 001190 481 E-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTMLYS 547 (1128)
Q Consensus 481 d-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~~~~~i~~~~~s 547 (1128)
| .++ .....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|...|.+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9 432 1345688999999999998753 457999999999999999998877666 5677799999998
Q ss_pred C-CCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 548 A-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 548 ~-~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
+ ++.++++++ .|+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 215 ~~~~~~l~sgs----~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 215 SLNANMFISGS----CDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp SSSCCEEEEEE----TTSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEEEEEE----CCCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 7 788899888 49999999998 5578888999887 899999999999999999999999999999998887754
Q ss_pred CCC-----CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 626 EGG-----LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 626 ~~~-----~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
+.. ...|.+++|+|+|++|++|+.||.|++||..++.... .+..
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~------------------------------ 338 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL-NLGT------------------------------ 338 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE-EECC------------------------------
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE-EEec------------------------------
Confidence 322 2248999999999999999999999999986652111 0000
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
...+|.+.|.+++|+|+|.+|+
T Consensus 339 ----------------------------------------------------------~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 339 ----------------------------------------------------------LQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp ----------------------------------------------------------SCSSCCCCCCEEEECSSSSEEE
T ss_pred ----------------------------------------------------------ccCCCCCceEEEEECCCCCEEE
Confidence 0023888999999999999999
Q ss_pred EeeccceeEeeeccc
Q 001190 781 ALGSNGVQKLWKWHR 795 (1128)
Q Consensus 781 ~~~~dg~i~lw~~~~ 795 (1128)
+++.||.|++|++..
T Consensus 361 sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSG 375 (380)
T ss_dssp EECTTSCEEEEECCS
T ss_pred EeeCCCCEEEEecCC
Confidence 999999999998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=335.75 Aligned_cols=302 Identities=22% Similarity=0.307 Sum_probs=257.8
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
..+..+|. |.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.+++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVV 93 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEE
Confidence 34455564 9999999999998544899999999999999987654321 12235889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEec
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFE 491 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~ 491 (1128)
|+|||++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++|+.|+.+++|| ... .....+.
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred ECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEec
Confidence 99999999999999999999999876554 4567888999999999999 799999999999999 333 3345567
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+|...+..++|++.....++++++.|+.|++||++.......+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~ 244 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDL 244 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEET
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEe
Confidence 8999999999998877789999999999999999999888899999999999999999999999984 999999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec-------CCCCCCcceEEEcCCCCEE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l 644 (1128)
.+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|++++|
T Consensus 245 ~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 245 NEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp TTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred ccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 9999998888764 688999999865 56677899999999999887766542 2456689999999999999
Q ss_pred EEEEcCCcEEEEEcccCc
Q 001190 645 AVTTADNGFKILANAIGL 662 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~ 662 (1128)
++|+.||.|+|||+.+|.
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999874
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=358.11 Aligned_cols=336 Identities=12% Similarity=0.143 Sum_probs=264.1
Q ss_pred CcceEEEEEccCCC-EEEEE----------eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 406 ~~~V~~l~~spdg~-~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
...|.+++|+|+|+ +||+| +.|+.|+|||+.+++....... ..|...|++++|+|+++ +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccC
Confidence 34788999999997 99999 8899999999998764322222 36899999999999999 79999999
Q ss_pred CeEEEEe-cC----CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC------ceee---ecCCCCe
Q 001190 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (1128)
Q Consensus 475 ~~i~vWd-~~----g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~---~~~~~~~ 540 (1128)
+.|++|| .+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.... .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999874 25799999999999999998876 3322 2456667
Q ss_pred EEEEEEcCC-CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 541 i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
|.+++|+|+ +.++++++ .++.|++||+.+++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAG----SSNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEES----SSSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEc----CCCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 55666655 3666777777666655555443220
Q ss_pred eEEEecCCCCCCcceEEEcCCC-CEEEEEEcCC---cEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1224478999999986 6889999888 8999987654111000
Q ss_pred CCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecC
Q 001190 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (1128)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 775 (1128)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCe
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGK 853 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~ 853 (1128)
+. ..|...|.+++|+| ++++|++++ ||.
T Consensus 257 -------------------------------------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 257 -------------------------------------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp -------------------------------------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred -------------------------------------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 00 01566788888888 888888887 889
Q ss_pred EEEEECCCceEEEEeeCCCCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecccceeeecccc-------------------
Q 001190 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLKG------------------- 913 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~-~~lasg~~dg~v~iwd~~~~~~~~~l~~------------------- 913 (1128)
|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++|++.+++.......
T Consensus 287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE 365 (416)
T ss_dssp EEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred EEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence 99999999999999999999999999999 66 8999999999999999987754433211
Q ss_pred ----------------cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 914 ----------------HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 914 ----------------h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
|..++.+++|+|||++|++++.|+.|+||++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 366 ESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 6778889999999999999999999999999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=328.99 Aligned_cols=247 Identities=19% Similarity=0.309 Sum_probs=219.1
Q ss_pred eccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|++++|+|+|+ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 89999999999999999754321 22346889999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC------C
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~------g 550 (1128)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999976 66899999999999999996 4566678888899999999985 4
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
..+++++ .|+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 167 ~~l~s~~----~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~ 238 (319)
T 3frx_A 167 VTIISAG----NDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D 238 (319)
T ss_dssp CEEEEEE----TTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred cEEEEEe----CCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence 4788887 499999999999999999999987 8999999999999999999999999999999998888754 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988754 5999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=334.75 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=243.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|.+.|.+++|+|||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 66777666666666443322221 2457999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeec--ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC--eEEEecCCCCCe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~--~~~~~~~h~~~v 497 (1128)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999887655444444 7999999999999999 899999999999999 6666 567788999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ +++++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG----LDNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe----cCCcEEEEECCCCceE
Confidence 9999977 668999999999999999999888888888999999999999999999988 4899999999999988
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..+.. . ..+.+++|+|+++++++++.||.|++||+.+++... +. .+...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 3 368999999999999999999999999999887643 33 4455899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=324.52 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=225.3
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|...|++++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~v 91 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKI 91 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEE
Confidence 3578999999999999999999999999999999999887655 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++......+..|...|.+++|+|+++++++++.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99 88999999999999999999977 5689999999999999999999888889889999999999999999999884
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
++.|++||+.+++.+..+..+....+..++|+|++++|++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 ----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp ----TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred ----CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 8999999999999888887666668999999999999999999999999999999998888765543222333444
Q ss_pred -CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 -KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 -p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++.+|++|+.||.|++||+.++
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTC
T ss_pred eCCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=346.19 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=237.9
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +.+| ..+...+|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 455899999999 578999999999999988765432 4445 4555668899999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999887654 4679999999999999999 899999999999999 88999999999999999999977
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCC---CCeEEE---------------------EEEcCCCCeEEEeeecc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~---------------------~~~s~~g~~l~~~~~~~ 560 (1128)
++.+|++++.||.|++||+++++....+..+ ...+.+ ++|+|+|+++++++
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--- 266 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--- 266 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE---
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc---
Confidence 6689999999999999999988877776642 334444 44578999999987
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCCee-eEEEecCCCCCCcceEEEc
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|++||+.+++.+..+...+...+.+++|+|++. +|++++.||.|++||+.+++. +..+..+ +...|.++.+
T Consensus 267 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~- 343 (420)
T 3vl1_A 267 -VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF- 343 (420)
T ss_dssp -TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-
T ss_pred -CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-
Confidence 4899999999999988888765555899999999998 999999999999999998754 5666543 2336777755
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++|++++.|+.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=340.11 Aligned_cols=344 Identities=9% Similarity=0.094 Sum_probs=276.5
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999877654 34455 4455567899999 899999999999999 7788
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
....+.+|.+.|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999988899999999999999999999999884 899
Q ss_pred EEEEeCCCCceeeEecccc--CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
|++||+.+++.+..+..+. ...+.++++.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999988643 2356777776543221 011 12346889999999999
Q ss_pred EEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1128)
|++++.||.|++||+.++......
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQL-------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE--------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEc--------------------------------------------------------
Confidence 999999999999998654110000
Q ss_pred CCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceE-EEEeeC-CCCCeeEEE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLA 879 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~ 879 (1128)
.. .|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.
T Consensus 286 ---------------------~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 286 ---------------------PS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp ---------------------CC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred ---------------------cc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 00 1556677888888887 777777 78888888887643 566665 666788886
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecccc---------eeeecccccccCeeEEEEcCCCC---EEEEEcCCCcEEEEECCC
Q 001190 880 FHPQDNNIIAIGTEDSTIHIYNVRVD---------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 880 ~s~~d~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~~~Dg~i~iwd~~~ 946 (1128)
+. ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 343 ~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 343 FA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 54 6789999999999999998863 12234567889999999999999 788888899999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=359.57 Aligned_cols=293 Identities=20% Similarity=0.299 Sum_probs=250.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
-+|.+.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+|+|++
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCCE
Confidence 359999999999998766899999999999999987543211 012348899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEe----cCCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAP 496 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~----~~h~~~ 496 (1128)
|++|+.||+|+|||+.++..++ .+.+|...|.+++|+|+++ +|+||+.|++|++||..+.....+ .+|...
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999999999999999987665 5789999999999999999 799999999999999555554443 478999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
|.+++|+++.....+++++.|++|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCce
Confidence 99999988665578999999999999999998888899999999999999999999999984 99999999999998
Q ss_pred eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-----------------CCCcceEEEcC
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFSK 639 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~sp 639 (1128)
+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|+|
T Consensus 596 ~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 596 LYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred EEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 88776543 699999999988777665 56699999999998877643211 11367899999
Q ss_pred CCCEEEEEEcCCcEEEEEcc
Q 001190 640 EGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|++|++|+.||.|++|++.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=320.95 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=208.7
Q ss_pred eeccCCCcceEEEEE-----cc-CCCEEEEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEE
Q 001190 400 SIFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~ 469 (1128)
..+.+|.+.|++++| +| |+++||+|+.|++|++||+.+++.. .....+.+|...|++++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 358899999999999 77 9999999999999999999865421 22336789999999999999999 899
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~ 545 (1128)
+|+.|++|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...|.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999 88999999999999999999977 668999999999999999973 3333322 5677899999
Q ss_pred EcCCC----------CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 546 YSADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 546 ~s~~g----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
|+|++ .++++++ .|+.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVG----WDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEE----TTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eccccccccccCCCCCEEEEEc----CCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99987 6788887 499999999 45677778888876 89999999999999999999999999994
Q ss_pred -CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 616 -NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 616 -~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.......+.. + ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 244 ~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 244 NLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 2 269999999999888765 5778999998765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=321.05 Aligned_cols=282 Identities=12% Similarity=0.190 Sum_probs=242.2
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|...|.+++|+|+++++++++ ||.+++|++........ . ..+....|...|.+++|+|+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------~--~~~~~~~~~~~v~~~~~~~~ 108 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------V--SQLDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------S--EEEECSCTTSBEEEEEECTT
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------e--ecccccCCCCcEEEEEEcCC
Confidence 899999999999999999998 99999999764321000 0 01111127889999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
+++|++++ |+.|++||+.+++ ....+..|...|.+++|+| +++++++++.||.|++||+.+++.+..+.+|...|.
T Consensus 109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 99999998 8999999999887 6677888999999999999 899999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
+++|+|++++|++++.|+.|++||+.+++....... ...+..++|+|++.+++++. ++.|++||+.+++...
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 999999999999999999999999999876544322 26789999999999999976 8999999999877543
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+. .|...|.+++|+||+++|++++.||.|++||+.+++.+.... +...+.+++|+| ++++|+
T Consensus 261 -~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~-~~~~l~ 322 (337)
T 1gxr_A 261 -LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISV-DDKYIV 322 (337)
T ss_dssp -EC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------CSSCEEEEEECT-TSCEEE
T ss_pred -Ec---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-------------CCCcEEEEEECC-CCCEEE
Confidence 22 348899999999999999999999999999999998875543 345678999999 689999
Q ss_pred EEECCCcEEEEcC
Q 001190 1079 IGLTDGSVKVMEP 1091 (1128)
Q Consensus 1079 s~~~dg~i~iWd~ 1091 (1128)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.06 Aligned_cols=290 Identities=13% Similarity=0.183 Sum_probs=243.2
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCC
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 419 (1128)
.+|.+.|++++|+|+|..+|++|+.||.|+|||+.+++.... ....+|...|.+++|+| ++.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCCCC
Confidence 359999999999999933889999999999999998776532 11357999999999999 789
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.+
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence 999999999999999996 44444333345668999999999999 899999999999999889999999999999999
Q ss_pred EeccCCCCcc-EEEEEeccCcEEEEecCC----CCceeeecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC
Q 001190 500 ICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 500 ~~~~~~~~~~-~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
++|++ ++. ++++++.|+.|++||++. ......+ .+...|.+++|+| ++++|++++. ++.|++||+.+
T Consensus 210 ~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~ 282 (383)
T 3ei3_B 210 AEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYD 282 (383)
T ss_dssp EEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTB
T ss_pred EEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCC
Confidence 99987 456 999999999999999987 3333344 6888999999999 9999999884 89999999999
Q ss_pred CceeeEeccccC----------------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 574 GTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 574 ~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+.+++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 988877775532 12333555666655 667899999999999999999987665557788899
Q ss_pred cCCCCEEEEEEcCCcEEEEEccc
Q 001190 638 SKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+|++++|++++ |+.|++|++++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=345.04 Aligned_cols=382 Identities=11% Similarity=0.123 Sum_probs=277.2
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEeCCCe
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~ 429 (1128)
.|+|+++ .+++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~-~~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCC-CCCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCccc-cccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 4788888 456543 3773 3554432 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c---CCCeEEEecCCCCCeEEEec
Q 001190 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---SGRKLFNFEGHEAPVYSICP 502 (1128)
Q Consensus 430 i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~---~g~~~~~~~~h~~~v~~~~~ 502 (1128)
|+|||+.+ +...+....+ +|.+.|++++|+|+++ +|++|+.|++|++|| . +++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5533322223 5999999999999999 899999999999999 3 67777777666 6777777
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE--EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~--~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
++.+ +...+.++. +++++.++++++ .++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALT----NLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEE----TTSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCeeeEEE
Confidence 5521 112233444 678999999988 4899999999999999999
Q ss_pred cc--ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc----CCCCEEEEEEcCCcEE
Q 001190 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (1128)
Q Consensus 581 ~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----p~~~~l~~~~~dg~i~ 654 (1128)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+ |++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 98 555 89999999999999999999999999999999988876322 3478999554 5788999999999999
Q ss_pred EEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCC
Q 001190 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1128)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1128)
+||+.++. ....+.++. ..+..+.|+|+++.+
T Consensus 287 iwd~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l------------------------------------------ 318 (437)
T 3gre_A 287 IWNFVKGH-CQYAFINSD-----EQPSMEHFLPIEKGL------------------------------------------ 318 (437)
T ss_dssp EEETTTTE-EEEEEESSS-----SCCCGGGGSCBCSSG------------------------------------------
T ss_pred EEEcCCCc-EEEEEEcCC-----CCCccceeccccccc------------------------------------------
Confidence 99998763 333332221 122222333322211
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
.+.
T Consensus 319 -------------------------------------------------~~~---------------------------- 321 (437)
T 3gre_A 319 -------------------------------------------------EEL---------------------------- 321 (437)
T ss_dssp -------------------------------------------------GGC----------------------------
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEE
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~las 890 (1128)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....+++ +..+++.
T Consensus 322 ---------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (437)
T 3gre_A 322 ---------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLR 390 (437)
T ss_dssp ---------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEE
T ss_pred ---------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEE
Confidence 00011267789999999 888999998 99999999999999998887643 355666666 5444443
Q ss_pred EeCCCcEEEEecccceeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEE
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWS 943 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd 943 (1128)
. |+...+.....+..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 333444555667789999999999998 77999999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=318.08 Aligned_cols=307 Identities=15% Similarity=0.208 Sum_probs=227.5
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
+.+++..+.+|.. .|.+++|+++ +|++|+.|+.|++||+.++ .....+...+|...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566788888887 8999999987 9999999999999999875 344444333366689999999999999999999
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
++|++|++....... .
T Consensus 80 ~~v~iw~~~~~~~~~-------~--------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT-------F--------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC--------------C---------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-------c---------------------------------------------------------
Confidence 999999975320000 0
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
. +. + +.
T Consensus 96 ------~---~~------------------------------------~--------~~--------------------- 101 (330)
T 2hes_X 96 ------E---MD------------------------------------L--------LA--------------------- 101 (330)
T ss_dssp ------C---CE------------------------------------E--------EE---------------------
T ss_pred ------c---ce------------------------------------e--------EE---------------------
Confidence 0 00 0 00
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEcCCCC
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDN 885 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~ 885 (1128)
.+. .|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++
T Consensus 102 -------------~~~--~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~ 165 (330)
T 2hes_X 102 -------------IIE--GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SE 165 (330)
T ss_dssp -------------EEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SS
T ss_pred -------------EEc--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CC
Confidence 001 1666777777777777777777 77788887732 356778889999999999999 89
Q ss_pred CEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccc---eeEEeec
Q 001190 886 NIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRK---SVTIHIP 958 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~---~~~~~~~ 958 (1128)
.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.... .......
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec
Confidence 99999999999999999866 678899999999999999999 6799999999999999997643211 1222233
Q ss_pred CCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccc--ccccccCCCCCC-CeEEEEEee--CCCEEEEEecCCcEEE
Q 001190 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER--IRQWTPQDALSA-PISCAVYSC--NSQLVFATFCDGNIGV 1033 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~~~h~~-~v~~l~~s~--dg~~l~t~~~dg~i~v 1033 (1128)
.......+.+++|++++.++..+.|+.|++|+..++.. +... ...|.. .|.+++|+| |+++|++|+.||.|+|
T Consensus 246 ~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp CSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred ccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 33233789999999877544445699999999987642 2222 123355 899999999 7999999999999999
Q ss_pred EecCC
Q 001190 1034 FDADT 1038 (1128)
Q Consensus 1034 wd~~~ 1038 (1128)
||+++
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 99875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=348.64 Aligned_cols=285 Identities=10% Similarity=0.082 Sum_probs=216.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCC---------CcEEEE-------------------eeccCeEEEEEccCCceeccccc
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLV-------------------GSSNGEITLWELAMRDRLVSKPF 385 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg---------~~lla~-------------------gs~d~~i~iwd~~~~~~~~~~~~ 385 (1128)
......++.+.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++....
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--- 198 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--- 198 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEE---
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce---
Confidence 34455566677888888888876 3 5555 45788999999987764211
Q ss_pred ccccccccCccccceeccCCCcceEEEEEccC------CCEEEEEeCCCeEEEEEccCCCcc--------eeceeecccc
Q 001190 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD------GNYVGVAFTKHLIQLYSYAGSNDL--------RQHSQIDAHV 451 (1128)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~vwd~~~~~~~--------~~~~~~~~h~ 451 (1128)
....+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... ....++.+|.
T Consensus 199 ------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 199 ------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp ------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred ------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 01225678899999999997 579999999999999999877532 1123577999
Q ss_pred cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecCCC
Q 001190 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTM 528 (1128)
Q Consensus 452 ~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~ 528 (1128)
..|++++|++++ .|++|+.||+|++|| .++ .+...+.+|...|.++++...+++ .+|++++.|++|++||+++.
T Consensus 267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 999999999864 699999999999999 555 445678999999999943224465 79999999999999999887
Q ss_pred CceeeecCCC--CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 529 GSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 529 ~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.....+..+. ..|.+++|+|+++.+++++ .++.|++||++++..+..+.+|.. .|.+++|+|+++.|++|+.|
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~----~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD----GASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEEC----SSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETT
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeC----CCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECC
Confidence 6665555443 2578999999999988887 488999999999999889999887 89999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEecC---CCCCCcceEEEcCCCCE
Q 001190 607 SQIKFWDMDNVNILTSTDAE---GGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~ 643 (1128)
|+|++||...+ .+...... .....+..++|+|++..
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 457 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDK 457 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCE
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCe
Confidence 99999998654 22211100 01113567788888763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=326.70 Aligned_cols=276 Identities=18% Similarity=0.278 Sum_probs=242.0
Q ss_pred eecCCCcE-EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 340 SLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 340 ~~~h~~~V-~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+|.+.| +| ++++|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+ +
T Consensus 114 l~~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 114 LKGHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EECSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred ecccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence 34588775 55 555677 789999999999999999887643 77899999999998 6
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 699999999999999999987665 577999999999996 45 799999999999999 8899999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.++++ ++.++++++.||.|++||+++......+..|...|.++.| ++.++++++ .++.|++||+.+++.+
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~----~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS----LDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE----TTSCEEEEETTTCCEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe----CCCeEEEEECCCCCEE
Confidence 99998 4578999999999999999998888889889999999999 888999988 4899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC-CCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
..+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++|
T Consensus 313 ~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 313 HTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp EEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred EEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 99998876 6666665 56799999999999999999999988887532 45678999995 5799999999999999
Q ss_pred EcccC
Q 001190 657 ANAIG 661 (1128)
Q Consensus 657 ~~~~~ 661 (1128)
|+.++
T Consensus 388 d~~~~ 392 (445)
T 2ovr_B 388 DLKTG 392 (445)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99876
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=328.23 Aligned_cols=292 Identities=16% Similarity=0.254 Sum_probs=249.2
Q ss_pred cccCCCCCcceEEeecCCCcE-EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V-~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
.|.............+|...| .|+.| +++ ++++|+.||+|+|||+.+++.+.. +.+|
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h 161 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGH 161 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCC
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCC
Confidence 344333333444445687774 66666 455 789999999999999999887653 7789
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-c
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.+.|.+++|+|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCC
Confidence 9999999999998 99999999999999999987665 5789999999999995 566 899999999999999 5
Q ss_pred CCC-----------------------eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC
Q 001190 483 SGR-----------------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 483 ~g~-----------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
++. .+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 544 25577889999998853 567999999999999999999988889999999
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
.|.+++|+|+++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CEEEEEEETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999984 89999999999999999999887 88888887 58999999999999999999877
Q ss_pred eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
...... ...+..++|+++++++++++ ||.|++||+.++
T Consensus 385 ~~~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 385 KFSYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eeeecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 666542 23578889999999999998 899999999887
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.74 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=206.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccc------------------cceeEEEEecCCCe
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV------------------GAVNDLAFAYPNKL 465 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~------------------~~v~~l~fs~d~~~ 465 (1128)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+.. +.+|. ..|++++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 67899999999886653 33332 2499999999999
Q ss_pred EEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEE
Q 001190 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 544 (1128)
+|++|+.|++|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++++.....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999 88888999999999999999977 66899999999999999999887766665 44579999
Q ss_pred EEcC-CCCeEEEeeeccCCCceEEEEeCCCCceeeEe-------ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 545 LYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 545 ~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999884 899999999999888776 45555 899999999999999999999999999976
Q ss_pred Ce------------eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 617 VN------------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. ....+. ++...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp -------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred CCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 43 233344 44557999999999999999999999999998765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=357.11 Aligned_cols=484 Identities=13% Similarity=0.053 Sum_probs=356.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeecc------CeEEEEEccCCceecccccccccccccCccccceeccCCCcc
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
........|...|.+++|||||+ .||.++.+ ..|.+||+.+++.. .+.+|...
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~ 101 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK 101 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred CcEEEeeeCCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence 44555667999999999999999 45655433 48999999887642 26778888
Q ss_pred e-------EEEEEccCCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--
Q 001190 409 V-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-- 473 (1128)
Q Consensus 409 V-------~~l~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-- 473 (1128)
+ .+++|||||+.+++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~ 171 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF 171 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence 8 999999999977777654 358888888876432 3233 245778999 6 4666542
Q ss_pred ----------CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeE
Q 001190 474 ----------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWC 541 (1128)
Q Consensus 474 ----------d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i 541 (1128)
+...++|. ..+.....+.+|...+.++.|++ + .++++++.|+.+++|.++... ....+..+. .+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY 247 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence 34567776 44456667799999999999965 4 577788889999999876533 333444333 45
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc----------CCceeEEEEe-CCCCEEEEEECCCcEE
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFD-TTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~~s~dg~i~ 610 (1128)
...+|+|||+.++++. ++.|++||....+. ..+.++. ...+..++|+ |+|++|++++ ++.|+
T Consensus 248 ~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK-----GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp CEEEEEESSSCEEEEE-----TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred ceeeEcCCCCEEEEEe-----CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 6779999999999874 78899999954443 3555421 1257889999 9999999888 78999
Q ss_pred EEECCCCeeeEEEecCCCCC-CcceEEEcCCCCEEEEEEcCCcEE-EEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 611 FWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
+|+..+++... +. .+.. .+..++|+ ||+.+++++.++.+. +|++.++.. ..
T Consensus 321 ~~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~--------------------- 373 (1045)
T 1k32_A 321 IQDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EK--------------------- 373 (1045)
T ss_dssp EECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EE---------------------
T ss_pred EEcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eE---------------------
Confidence 99998887554 22 2333 67899999 999999999887787 888654310 00
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
+ .++...+.
T Consensus 374 --------------------------------------------------------------------l---~~~~~~~~ 382 (1045)
T 1k32_A 374 --------------------------------------------------------------------F---EENLGNVF 382 (1045)
T ss_dssp --------------------------------------------------------------------C---CCCCCSEE
T ss_pred --------------------------------------------------------------------e---cCCcccee
Confidence 0 01455678
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.++|+|||++|++++.++.+++||+.. +.... ...+ |...+.+++|||||++|++
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~-~~~~--~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTV-IERS--REAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEE-EEEC--SSSCCCCEEECTTSCEEEE
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEE-eccC--CCCCccceEECCCCCeEEE
Confidence 899999999999999999999997643 22111 1112 6777899999999999988
Q ss_pred Ee-CC----------eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-----------
Q 001190 849 AT-GG----------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----------- 906 (1128)
Q Consensus 849 ~~-dg----------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----------- 906 (1128)
++ ++ .|++||+.+++ ...+..|...+..++|+| ||+.|++++.++...+|+.....
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred EecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence 76 33 79999999987 667777888899999999 99999999987776666543211
Q ss_pred --------------------------------eeecccccccCeeEEEEcCCCCEEEE-------------EcCCCcEEE
Q 001190 907 --------------------------------VKSKLKGHQKRITGLAFSTSLNILVS-------------SGADAQLCV 941 (1128)
Q Consensus 907 --------------------------------~~~~l~~h~~~V~~l~~s~d~~~l~s-------------~~~Dg~i~i 941 (1128)
.+..+..|.+.+..++++|||+++++ .+.+..|.+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 11233456778899999999987875 123457888
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
||+.+++..... ..+..++|||||++|+++.++.+++||+.+++
T Consensus 596 ~d~~~~~~~~l~----------~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVTEVK----------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEEEEE----------EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EECCCCcEEEee----------cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 899887642221 34678899999999999988899999998876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=326.60 Aligned_cols=291 Identities=13% Similarity=0.162 Sum_probs=250.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 417 (1128)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++.... + .....+.+|...|.+++|+|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~--~-----------~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP--K-----------DKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG--G-----------GGEEEEECCTTCEEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC--C-----------CcceEEecCCCcEEEEEEecccccC
Confidence 5999999999999 4 789999999999999998772110 0 011236789999999999999
Q ss_pred C---CEEEEEeCCCeEEEEEccCCCc-----ceeceeeccc-----ccceeEEEEe----cCCCeEE-EEEecCCCeEEE
Q 001190 418 G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIKV 479 (1128)
Q Consensus 418 g---~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~fs----~d~~~~~-l~s~s~d~~i~v 479 (1128)
| ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI 152 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence 9 9999999999999999999875 44 46677 5999999999 9999 7 999999999999
Q ss_pred Ee-cC------CCeEE-----Ee-------cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC---C
Q 001190 480 WE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---P 537 (1128)
Q Consensus 480 Wd-~~------g~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~ 537 (1128)
|| .+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||++.......+.. |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 99 66 66665 66 44889999999977 66 999999999999999999888888888 7
Q ss_pred ---CCeEEEEEEcCCCCeEEEeeeccCCC---ceEEEEeCCCCceeeEecc-------------ccCCceeEEEEeCCCC
Q 001190 538 ---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 538 ---~~~i~~~~~s~~g~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~ 598 (1128)
...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|+++
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 304 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGE 304 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSS
T ss_pred cccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCCC
Confidence 889999999999999999885 6 8999999999999999988 665 899999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeEEEe------cC-------------CCCCCcceEEEcCCC----------CEEEEEEc
Q 001190 599 HFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTTA 649 (1128)
Q Consensus 599 ~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~~----------~~l~~~~~ 649 (1128)
+|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++.
T Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~ 384 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL 384 (397)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC
Confidence 99999999999999999999999887 43 014589999999998 79999999
Q ss_pred CCcEEEEEcccC
Q 001190 650 DNGFKILANAIG 661 (1128)
Q Consensus 650 dg~i~iw~~~~~ 661 (1128)
||.|++|++.++
T Consensus 385 dg~i~iw~~~~g 396 (397)
T 1sq9_A 385 DRSIRWFREAGG 396 (397)
T ss_dssp TTEEEEEEEEC-
T ss_pred CCcEEEEEcCCC
Confidence 999999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=319.24 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=255.2
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcC
Confidence 334456999999999999999 789999999999999999887643 778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-cCCC-----
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR----- 485 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~~g~----- 485 (1128)
++++|++++.||.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 999999999999999999999887663 33 888999999999999 78899888 9999999 4442
Q ss_pred ------eEEEecCCCC--CeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 486 ------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 486 ------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
.+..+..|.+ .+.+++|++ ++.+|++++.||.|++||++. ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 4455666766 899999977 668999999999999999998 56667788889999999999999999998
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--------------cEEEEECCCCeeeEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTS 622 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~~~~ 622 (1128)
+ .++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+..
T Consensus 237 ~----~d~~i~v~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 237 S----RDTNSFLVDVSTLQVLKKYET-D-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp E----TTSEEEEEETTTCCEEEEEEC-S-SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred c----CCceEEEEECCCCceeeeecC-C-CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 7 489999999999999988883 3 3789999999999999999888 899999999999988
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+..+. ..|.+++|+|++++|++++.||.|++|++..+
T Consensus 311 ~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 311 VQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 87554 48999999999999999999999999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=340.52 Aligned_cols=349 Identities=9% Similarity=0.031 Sum_probs=245.5
Q ss_pred CCcceEEEEEccCC---------CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 405 h~~~V~~l~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 67899999999987 799999866420 01368888 799999999
Q ss_pred eEEEEe-cCCCeE----EEecCCCCCeEEEeccCC----CCccEEEEEeccCcEEEEecCCCCc-----------eeeec
Q 001190 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1128)
Q Consensus 476 ~i~vWd-~~g~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~-----------~~~~~ 535 (1128)
+|+||| .+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 556542 456778899999999986 3467999999999999999976542 23566
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccCCceeEE--EEeCCC-CEEEEEECCCcEEE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i~i 611 (1128)
.|...|.+++|++++ .|++++ .|+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs----~DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGF----KNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEE----TTSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEe----CCCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 788887 49999999999874 4556888877 78888 578887 89999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 691 (1128)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++.. ...
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~------------------------ 392 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHP------------------------ 392 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEE------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-cee------------------------
Confidence 9999887766665443323578999999999999999999999999866411 000
Q ss_pred ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEE
Q 001190 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1128)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1128)
+ .+|.+.|.+++
T Consensus 393 -----------------------------------------------------------------l---~gH~~~V~sva 404 (524)
T 2j04_B 393 -----------------------------------------------------------------L---VSRETTITAIG 404 (524)
T ss_dssp -----------------------------------------------------------------E---EECSSCEEEEE
T ss_pred -----------------------------------------------------------------e---ecCCCceEEEE
Confidence 0 12888999999
Q ss_pred EecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC
Q 001190 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1128)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 851 (1128)
|+|+|+.|++++.||+|++|++..... ....+ .....+...+.+++|+|+|+.+.. .
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~---------------~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~--~ 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLL---------------HGIKN------SSATQKSLRLWKWDYSIKDDKYRI--D 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTT---------------TCC------------CCCCEEEECBCCSSSCEEEE--C
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhc---------------ccccc------CccceeeeEEEEeccCCCCCeEEc--c
Confidence 999999999999999999998643110 00000 000002234678999999996533 2
Q ss_pred CeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCC---CCEEEEEeCCCcEEEEeccc
Q 001190 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQD---NNIIAIGTEDSTIHIYNVRV 904 (1128)
Q Consensus 852 g~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d---~~~lasg~~dg~v~iwd~~~ 904 (1128)
+.+.+|+.. ++.++..+.+|...|.+++|+| + +..+|+|+.||.|+||++.-
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344332 5677888999999999999999 6 45999999999999999763
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=335.49 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=238.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCC
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 419 (1128)
.+|...|+|++|||++..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 358889999999996555899999999999999987764321 12678999999999998 789
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+|++|+.||+|++||++++. +........+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 99999999999999998754 332222334556789999999999 899999999999999888889999999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
++|++.. ..++++++.|+.|++||++....... ...|...|.+++|+|+|++|++++. |+.|++||+.++..
T Consensus 256 v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 9998753 35889999999999999987665433 3467789999999999999999984 89999999999988
Q ss_pred eeEeccccCC-----ceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceE-EEc
Q 001190 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (1128)
Q Consensus 577 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (1128)
...+..|... ......|++++..+++++ .++.|++||..+++.+..+.. .+...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEEC
Confidence 8877766431 123356777777777664 245799999999998887753 334467777 699
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|+|++|++|+ |+.|+||++.++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=323.11 Aligned_cols=293 Identities=15% Similarity=0.099 Sum_probs=247.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 78999999999999998876 332 37789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe----EEEecCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~----~~~~~~h~~ 495 (1128)
|++++.||.|++||+.+++..... .+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTL-VILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEE-ECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeeeE-EeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999987644322 3568999999999999999 899999999999999 55552 233467899
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecC------------------CCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~------------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.|.+++|++ ++.+|++++.||.|++||+. .......+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999977 66899999999999999954 4566667778888999999999999999988
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC--CeeeE--E-----------
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILT--S----------- 622 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~~--~----------- 622 (1128)
.++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ +.... .
T Consensus 222 ----~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 ----HDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp ----TTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred ----CCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 489999999999999999998876 89999999999877776 999999999987 53110 0
Q ss_pred -----------------------Eec-CCCCCCcceEEEc-CCC---CEEEEEEcCCcEEEEEcccCccccc
Q 001190 623 -----------------------TDA-EGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 623 -----------------------~~~-~~~~~~v~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
... .+|...|.+++|+ ++| .+|++++.||.|++|++.++.+.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 111 2566689999966 676 9999999999999999988755443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=309.54 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=249.9
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.....+ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 444555 49999999999 9988 68999999999999998876553 26679999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~ 494 (1128)
+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544445568899999999999 466 799999999999999 788889999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
..+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++ .++.|++||+.+
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCc
Confidence 99999998763 457999999999999998 3445555665 788999999999998 77766 489999999999
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998887 89999999998 69999999999999999999998887654 4799999999998 6679999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=321.92 Aligned_cols=319 Identities=19% Similarity=0.308 Sum_probs=270.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 47889887643 356679999999999999999999998766 577999999999998 45 79999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
| .+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...|.++.+ +++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-- 256 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA-- 256 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE--
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc--
Confidence 9 8899999999999999999984 358999999999999999999988899999999999998 788899887
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.++.|++||+.+++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+. ..+.++.+
T Consensus 257 --~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~-- 327 (445)
T 2ovr_B 257 --YDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL-- 327 (445)
T ss_dssp --TTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--
T ss_pred --CCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--
Confidence 489999999999999999998876 7888888 78999999999999999999999988887543 35666665
Q ss_pred CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCC
Q 001190 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1128)
+++++++++.||.|++||+.++.. ...+..
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~------------------------------------------------- 357 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQC-LQTLQG------------------------------------------------- 357 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCE-EEEECS-------------------------------------------------
T ss_pred eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc-------------------------------------------------
Confidence 567999999999999999865411 100000
Q ss_pred CCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCC
Q 001190 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1128)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 799 (1128)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEe-----eCCCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~ 873 (1128)
. ..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+ ..|.+
T Consensus 358 -------------------------~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 358 -------------------------P--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp -------------------------T--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred -------------------------C--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 0 0155667778874 57888887 888999999999888887 46788
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCc----EEEEeccc
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDST----IHIYNVRV 904 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~----v~iwd~~~ 904 (1128)
.|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 409 ~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 899999999 9999999999998 99999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=311.04 Aligned_cols=298 Identities=17% Similarity=0.273 Sum_probs=246.3
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
.|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+|+ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48999999999999997 689999999999999999876542 22346789999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCC--eE
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS--RL 553 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~--~l 553 (1128)
++|+ ..+........+...+..+.+.+ ++.+|++++.|+.+++||+....... ....+...+..++|++++. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77878888888888898888866 56789999999999999987654433 3456777899999998764 45
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
++++ .++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .|.
T Consensus 189 ~s~~----~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCG----WDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEE----TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEc----CCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 5665 488999999999999999999887 89999999999999999999999999999999988887543 689
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
++.|+|++.++ +++.|+.|++||+.++. ....+.....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccce----------------------------------------
Confidence 99999987655 55569999999987652 2221111000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
.... .+|...|.+++|+|+|++|++++.||.|++|++
T Consensus 299 ----------------------------------------~~~~---~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 299 ----------------------------------------STSS---KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----------------------------------------eeec---cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0000 238889999999999999999999999999987
Q ss_pred cc
Q 001190 794 HR 795 (1128)
Q Consensus 794 ~~ 795 (1128)
..
T Consensus 336 ~t 337 (340)
T 4aow_A 336 TI 337 (340)
T ss_dssp EC
T ss_pred CC
Confidence 64
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=323.45 Aligned_cols=345 Identities=16% Similarity=0.208 Sum_probs=268.7
Q ss_pred eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..| ...|.+++|+|++ ++++|+.||+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456788888755666666 5679999999999999999999999888754 4589999999988 9999999999999
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
||+.++. ....
T Consensus 188 wd~~~~~-~~~~-------------------------------------------------------------------- 198 (464)
T 3v7d_B 188 WDIKKGC-CTHV-------------------------------------------------------------------- 198 (464)
T ss_dssp EETTTTE-EEEE--------------------------------------------------------------------
T ss_pred EECCCCc-EEEE--------------------------------------------------------------------
Confidence 9987652 1111
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe--cCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT--NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
+ .+|...|.+++|+ +++.++++++.||.+++|++....................
T Consensus 199 ---------------------~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 199 ---------------------F---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ---------------------E---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ---------------------E---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 1 1277888999888 5788999999999999999876543211111000000011
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
...........+.+ |...+.++ +++++++++++ ||.|++||+.+++.+..+.+|...|.+++|+| +++++++|+
T Consensus 255 ~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEE
T ss_pred ccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEe
Confidence 11111111222333 67777766 68899999998 89999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 893 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.||.|++||+.+++...... ....+..++|+
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~ 400 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-------HTNLSAITTFY 400 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-------CTTCCCEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-------CCCCccEEEEE
Confidence 99999999999999999999999999999997 5799999999999999999876433221 12567888999
Q ss_pred CCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 973 ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 973 ~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++.++++++|+.|++||+.+++.+...... |...|.+++|+ ++.++++++.||.+.+|-
T Consensus 401 ~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~--~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 401 VSDNILVSGSENQFNIYNLRSGKLVHANILK--DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ECSSEEEEEETTEEEEEETTTCCEEESCTTT--TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEecCCeEEEEECCCCcEEehhhcc--CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999999999999999999999988764333 38899999997 444555566777666554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=323.71 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=244.5
Q ss_pred cCCCcEEEEEEeCC---CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-
Q 001190 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspd---g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1128)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999995 444666667788999999998776532 1 11123347889999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCeEEEe--
Q 001190 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1128)
Q Consensus 418 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-- 490 (1128)
|++|++|+.||.|++||+.+++.+. .+.+|...|++++|+| ++. +|++|+.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999988765 5778999999999999 888 899999999999999 888888888
Q ss_pred -cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec----------------------------CCCCeE
Q 001190 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1128)
Q Consensus 491 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----------------------------~~~~~i 541 (1128)
.+|...|.+++|++ ++.+|++++.||.|++||++.......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999977 66899999999999999998765443322 277889
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--------------eeEeccccCCceeEEEEeCC--CCEEEEEEC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~ 605 (1128)
.+++|+ ++++++++. ++.|++||+.+++. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 778888874 89999999988754 677777776 7899999999 999999999
Q ss_pred CCcEEEEECCCCee----eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 606 DSQIKFWDMDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 606 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998764 3356655446789999999999999999999999999975
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.49 Aligned_cols=289 Identities=13% Similarity=0.198 Sum_probs=241.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeec---cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1128)
+|.+.|++++|+|+|++++++|+. |+.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999878888887 99999999998876431 13368999999999999
Q ss_pred --CCEEEEEeCCCeEEEEEccCCC-cceeceeecccccceeEEEE------ecCCCeEEEEEecCCCeEEEEe-cCCC-e
Q 001190 418 --GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE-LSGR-K 486 (1128)
Q Consensus 418 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~f------s~d~~~~~l~s~s~d~~i~vWd-~~g~-~ 486 (1128)
|.+|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999987 444 57799999999955 67898 899999999999999 6665 6
Q ss_pred EEEecCCCC----CeEEEecc--CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC---CCCeEEEee
Q 001190 487 LFNFEGHEA----PVYSICPH--HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFSCG 557 (1128)
Q Consensus 487 ~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~ 557 (1128)
+..+..|.+ .+.+++|. ..+++.++++++.||.|++||++..... ....+...|.+++|+| ++.++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777766655 78888832 1347789999999999999999887664 3455677899999999 999999987
Q ss_pred eccCCCceEEEEeCCCCceeeEec-----cccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC--------------
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV-------------- 617 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~-------------- 617 (1128)
. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||+.++
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 4 8999999999887766665 7765 899999999998 8999999999999999754
Q ss_pred -----eeeEEEecCCCCCCcceEEEcCCCCEEE-EEEcCCcEEEEEcccC
Q 001190 618 -----NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1128)
Q Consensus 618 -----~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~ 661 (1128)
+.+..+.. +...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34445554 455899999999999998 7999999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=318.39 Aligned_cols=316 Identities=15% Similarity=0.205 Sum_probs=252.8
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEE
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~ 645 (1128)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++++|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 345556677778888886 89999999999 999999999999999999998888877656777999999999 789999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999997532 0000000
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d 884 (1128)
.. .+...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+++|+| +
T Consensus 159 -------------------~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~ 215 (383)
T 3ei3_B 159 -------------------TD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-R 215 (383)
T ss_dssp -------------------CC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-S
T ss_pred -------------------cC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-C
Confidence 00 1456688888889888888888 788999998 5778888899999999999999 7
Q ss_pred CC-EEEEEeCCCcEEEEeccc----ceeeecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeec
Q 001190 885 NN-IIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 885 ~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
++ +|++|+.|+.|++||+.+ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++....+..+..
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 77 999999999999999998 5666666 6999999999999 999999999999999999999877655543321
Q ss_pred CCCC-CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 959 AGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 959 ~~~~-~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.... ...+. +.|+| ...+..++|+|||++ +++.||.|+|||+.
T Consensus 295 ~~~~~~~~~~-~~~~p---------------------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 295 RQFQHLTPIK-ATWHP---------------------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp CCCTTSCCCC-CEECS---------------------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred cccccccceE-EeccC---------------------------------CCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 1110 01111 23333 345667889999998 88999999999999
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++.+..+.. +.+...+..++|+| ++.+|++|+ ||.|++||+.+
T Consensus 339 ~~~~~~~l~~----------~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRD----------PNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECB----------TTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecC----------CCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999888872 23455566779999 689999997 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=314.37 Aligned_cols=301 Identities=11% Similarity=0.113 Sum_probs=231.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeecc-------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
...+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 345899999999998 78888653 36999999876543211110 01122477899999988765
Q ss_pred cCCCEEEEEe-----------CCCeEEEEEccCCCcceec------eeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 416 pdg~~las~~-----------~d~~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+..+++|. .|+.+++|++..+...... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 5778999999876432111 1122455678999999999965566778899999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
||| .+++++..+. |.+.|.+++|+| +|+++++++.+ .+++|+..++..... ...+...|.+++|+|+|+++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999977 77899998855 566666666665543 3456678999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCce----eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++.++.....+++|++..... ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+. .+|...
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-~gH~~~ 314 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-QAHSFA 314 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-TSSSSC
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-CcccCC
Confidence 987544445788999877653 345667766 79999999999999999999999999999999888752 244568
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|++++|+|||++|++++.|++|+||++..+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=321.14 Aligned_cols=315 Identities=11% Similarity=0.083 Sum_probs=245.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-..+|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 457899999999999 889999999999 6444332 46899999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC-----Ce
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~-----~v 497 (1128)
.++.+.+|+.+....+ .+ +|...|++++|||||+ .|++++.||+|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4555555554332211 12 5688999999999999 799999999999999444 666677 766 49
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCc-------eeee----cCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~~~----~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++ .|+.|
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass----~D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL----SNNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE----TTCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe----CCCeE
Confidence 9999977 779999999999999999988653 3444 5566799999999999 66665 38999
Q ss_pred EEEeCCCCce---eeEec-cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE--cCC
Q 001190 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (1128)
Q Consensus 567 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp~ 640 (1128)
++||+.++.. .+++. +|. ..|..++|+ ++.|++++ ++.|++||..+++...... ++...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCC
Confidence 9999988874 35664 554 489999999 68888887 6999999999888744433 35568999999 999
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
+..+++++.+|+ ++|..+ .++++||+..++
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a--------------------------- 308 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNIIAP--------------------------- 308 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHH---------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEE---------------------------
Confidence 999999999999 999875 145777777653
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 784 (1128)
. .|+++++|+.... ... . ..+...|.+++|+|||+.+++++.
T Consensus 309 ----------~--~d~~v~lW~~~g~----~l~-----~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 ----------Y--LEKKFKKWSTIWN----EFN-----N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----------H--HHHHHHHTTTTTT----SSS-----S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----------E--cCCEEEEEECCCC----cee-----e-eccceEEEEEEECCCCCEEEEEEe
Confidence 2 2578888876321 111 1 113556999999999998888765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.71 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=224.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC--ceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
+.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567899999999999 7899999999999999987 3332 37789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecC-CCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~-h~~ 495 (1128)
|++|+.|+.|++||+.+++.......+.+|...|++++|+|+++ +|++|+.|+.|++|| .+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999999873333335778999999999999999 799999999999999 6655 4677887 999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCC------------------CCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.|.+++|++ ++.+|++++.|+.|++||+.. ......+ .|...|.+++|+|+|++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 668999999999999999853 2233344 7788999999999999999998
Q ss_pred eccCCCceEEEEeCCCCce----eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--------------
Q 001190 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-------------- 619 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------------- 619 (1128)
.++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+......
T Consensus 225 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 ----HDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp ----TTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred ----CCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 489999999999987 788888876 89999999999988888766655 666542110
Q ss_pred -------------------------eEEEec-----------CCCCCCcceEEEcCC-CC---EEEEEEcCCcEEEEEc
Q 001190 620 -------------------------LTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (1128)
Q Consensus 620 -------------------------~~~~~~-----------~~~~~~v~~v~~sp~-~~---~l~~~~~dg~i~iw~~ 658 (1128)
...... ..|...|.++++.+. +. .+++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000000 115567899987654 33 6999999999999984
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=306.42 Aligned_cols=303 Identities=12% Similarity=0.156 Sum_probs=246.7
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 34588999999999999999999999999999999999988765 5789999999999999999 899999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCc-----------eeeecCCCC--
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH-- 539 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~-----------~~~~~~~~~-- 539 (1128)
+|| .+++.+..+. |...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 999 8888888888 888999999977 66899999998 9999999977643 223334444
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
.+.+++|+|+++++++++ .++.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++
T Consensus 177 ~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGH----KDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CEEEEEECGGGCEEEEEE----TTSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ceeEEEEcCCCCEEEEEc----CCCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 899999999999999987 489999999999 788888888876 89999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
.+..+.. ...+.+++|+|+++++++++.++.+.+|.......
T Consensus 252 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------- 293 (369)
T 3zwl_B 252 VLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG----------------------------------- 293 (369)
T ss_dssp EEEEEEC---SSCEEEEEECSSSSEEEEEECCC-----------------------------------------------
T ss_pred eeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCCC-----------------------------------
Confidence 9888873 33689999999999999999998555543322100
Q ss_pred CcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce
Q 001190 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1128)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 778 (1128)
...+++|+.... . ....+ .+|...|.+++|+|++++
T Consensus 294 ------------------------------------~~~i~~~d~~~~----~-~~~~~---~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 294 ------------------------------------KFEARFYHKIFE----E-EIGRV---QGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp -------------------------------------CEEEEEETTTC----C-EEEEE---ECCSSCEEEEEECTTSSE
T ss_pred ------------------------------------cceeEEEecCCC----c-chhhe---ecccCcEEEEEECCCCCE
Confidence 012233332210 0 01112 238889999999999999
Q ss_pred EEEeeccceeEeeecccc
Q 001190 779 LLALGSNGVQKLWKWHRN 796 (1128)
Q Consensus 779 l~~~~~dg~i~lw~~~~~ 796 (1128)
|++++.||.|++|++...
T Consensus 330 l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEcCCCeEEEEECccc
Confidence 999999999999998653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=320.30 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=246.7
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEec-----------CCCCC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----------EGGLP 630 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 630 (1128)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. .++..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577888888888888888876 899999999 999999999999999999998766554431 23556
Q ss_pred CcceEEEcC-CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
.|.+++|+| ++.++++++.||.|++||+.++.. ...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-cee------------------------------------------
Confidence 899999999 778999999999999999865410 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
T Consensus 138 -------------------------------------------------------------------------------- 137 (408)
T 4a11_B 138 -------------------------------------------------------------------------------- 137 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc---CCCeEEEEe-CCeEEEEECCCceEE
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMMTFKVM 865 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~~~~~~ 865 (1128)
+ .+...+.++++++ ++.++++++ ++.|++||+.+++.+
T Consensus 138 -~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 138 -F-------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp -E-------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred -c-------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 0 0223345555555 445788887 889999999999999
Q ss_pred EEeeCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEecccce-eeecc---------------cccccCeeEEEEcCCCC
Q 001190 866 TTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDE-VKSKL---------------KGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 866 ~~~~~~~~~v~~l~~s~~d~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~d~~ 928 (1128)
..+.+|...|.+++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|+++
T Consensus 180 ~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999999 666 69999999999999998764 22222 67999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
+|++++.||.|++||+.+++....................+.....+.+++++.++.|++||+.+++.+..+..+ ..
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~ 335 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YK 335 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SS
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CC
Confidence 999999999999999999876544332222222223333344455566777778999999999999998888765 88
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i 1088 (1128)
.|.+++|+||+++|++++.||.|++||+.+++.+...... .....+.+.....+.+++.|+.+++
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET---------------TTKSQLNPAFEDAWSSSDEEGGTSA 400 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce---------------EeccccccccceeecccCccCceee
Confidence 9999999999999999999999999999999876655411 1123344545667888999999999
Q ss_pred EcCCC
Q 001190 1089 MEPSE 1093 (1128)
Q Consensus 1089 Wd~~~ 1093 (1128)
|+...
T Consensus 401 W~~~~ 405 (408)
T 4a11_B 401 WSHPQ 405 (408)
T ss_dssp -----
T ss_pred cCCcc
Confidence 97653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=322.34 Aligned_cols=296 Identities=13% Similarity=0.185 Sum_probs=241.5
Q ss_pred cceEEee--cCCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccC---CceecccccccccccccCccccceeccCCCcc
Q 001190 335 RTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 335 ~~~~~~~--~h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
..+...+ +|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +.... .....+|.+.
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~~~ 113 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCSST 113 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECSSC
T ss_pred ceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCCCC
Confidence 4555555 4899999999999 998 789999999999999977 33211 0112259999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcc---CCCcceece-------eecc--cccceeEEE--EecCCCeEEEEEecCC
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-------QIDA--HVGAVNDLA--FAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~~-------~~~~--h~~~v~~l~--fs~d~~~~~l~s~s~d 474 (1128)
|.+++|+|++++|++|+.||.|++||+. +++.+.... .+.. +...+.++. +++++. +|++|+.|
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNL 191 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCC
Confidence 9999999999999999999999999995 554433110 1112 556677777 557788 89999999
Q ss_pred CeEEEEe-cCCCeEEEecC--CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEc---
Q 001190 475 KLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS--- 547 (1128)
Q Consensus 475 ~~i~vWd-~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s--- 547 (1128)
+.|++|| .+++.+..+.+ |.+.|++++|++ ++.+|++|+.||.|++||++.......+. .+...|.+++++
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 9999999 89999999998 899999999977 57899999999999999999877777765 566799999665
Q ss_pred -CCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc-------------------------CCceeEEEEeCCCCEEE
Q 001190 548 -ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 548 -~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~l~ 601 (1128)
+++.++++++ .|+.|++||+.+++.+..+.+|. ...+.+++|+ ++++|+
T Consensus 270 s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 270 GKNSVIVVGGS----SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTEEEEEEES----TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CCCccEEEEEc----CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 5677888887 48999999999999888887652 2357889999 778999
Q ss_pred EEECCCcEEEEECCCCeeeEEEecCC-----------------------------------CCCCcceEEEcCC--CCEE
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GNLL 644 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~sp~--~~~l 644 (1128)
+|+.||.|++||+.+++....+..+. |...|.+++|+++ +.+|
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999999999998777766431 5668999999998 7899
Q ss_pred EEEEcCCcEEEEE
Q 001190 645 AVTTADNGFKILA 657 (1128)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1128)
++|+.||.|++|+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999994
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=311.63 Aligned_cols=290 Identities=14% Similarity=0.228 Sum_probs=243.7
Q ss_pred cCCCc--EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 342 HQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 342 ~h~~~--V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
+|.+. +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|+|+
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 44555554 43 46677999999999999886542 1334899999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEEEecCCCCCe
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAPV 497 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~~~~~h~~~v 497 (1128)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|. +. ++++|+.|+.|++|| . .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999988666 577999999999994 55 799999999999999 4 577788999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ ++.+|++++.||.|++||++.......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999987 6789999999999999999998888888889999999999998876665431 113899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
..+..+ ..+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++++|++++.||.|++
T Consensus 298 ~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 888643 3699999999999999954 899999999999877766554556668999999999999999999999999
Q ss_pred EEcccCccc
Q 001190 656 LANAIGLRS 664 (1128)
Q Consensus 656 w~~~~~~~~ 664 (1128)
|++.++...
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 999887443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=310.57 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=241.4
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
..+.++||+++ +||+|. |++|+|||+.+|+.... ..+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 778874 99999999999987642 12567889999999999999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.||.|+|||+.+++.++ .+.+|...|.+++|. +. +|++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998766 578999999998875 55 799999999999999 4456678899999999999997
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+++.+. +..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCcccccee
Confidence 6 668999999999999999987653 3456677889999999998765554321 12589999999999999998
Q ss_pred eccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+..+. .+..+.|+++++.+++++ .||.|+|||+.+++.+..+..| ...|.+++|+|||++|++|+.|++|++||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 88765 588899999999998876 7999999999999999988755 55899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+...
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 8764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=321.94 Aligned_cols=303 Identities=15% Similarity=0.197 Sum_probs=232.0
Q ss_pred eeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEE
Q 001190 577 KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFK 654 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~ 654 (1128)
.....+|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455554 799999999 45789999999999999999887777776667778999999998 789999999999999
Q ss_pred EEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCC
Q 001190 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1128)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1128)
+||+.++. ...+
T Consensus 191 iwd~~~~~--~~~~------------------------------------------------------------------ 202 (435)
T 4e54_B 191 LQDFKGNI--LRVF------------------------------------------------------------------ 202 (435)
T ss_dssp EEETTSCE--EEEE------------------------------------------------------------------
T ss_pred EeeccCCc--eeEE------------------------------------------------------------------
Confidence 99975431 0000
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
... +
T Consensus 203 ----------------------------------------------~~~-~----------------------------- 206 (435)
T 4e54_B 203 ----------------------------------------------ASS-D----------------------------- 206 (435)
T ss_dssp ----------------------------------------------ECC-S-----------------------------
T ss_pred ----------------------------------------------ecc-C-----------------------------
Confidence 000 0
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
.+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.
T Consensus 207 --------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 207 --------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp --------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred --------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 0233466788888888888887 7889999985 45667788899999999999955568999999
Q ss_pred CCcEEEEecccceeeec---ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEE
Q 001190 894 DSTIHIYNVRVDEVKSK---LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~---l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
|+.|+|||+.+++.... ..+|...|++++|+|+|.+|++++.||.|+|||+.+++.......+..............
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999999988765443 467999999999999999999999999999999999876554433322221113344567
Q ss_pred EcCCCCEEEEEe-------------cCeEEEEecCCcccccccccCCCCCCCeEEE-EEeeCCCEEEEEecCCcEEEEec
Q 001190 971 FNADQVRMLVVH-------------ETQLAIYDASKMERIRQWTPQDALSAPISCA-VYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 971 ~s~d~~~l~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
|+|++.+++++. ++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+||++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 777777776642 357999999999988776543 37788887 6999999999876 889999999
Q ss_pred CCCceE
Q 001190 1037 DTLRLR 1042 (1128)
Q Consensus 1037 ~~~~~~ 1042 (1128)
++|+.+
T Consensus 429 ~~gk~r 434 (435)
T 4e54_B 429 QEARTR 434 (435)
T ss_dssp C-----
T ss_pred CcCeee
Confidence 998753
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=297.69 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=212.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.++|++++|+++ ++ +|+||+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 4788999999999999999999999999999999975421 122368899999999999864 77 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCC----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~---- 549 (1128)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6663 567788999999999998865578999999999999999987542 3566788889999999997
Q ss_pred ---------CCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEEEEE
Q 001190 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 550 ---------g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd 613 (1128)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|+.|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 568888884 8999999998776 6677888887 89999999984 7999999999999999
Q ss_pred CCCCe---eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 97743 112232234456799999999999999999999999999753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=334.28 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=215.2
Q ss_pred eeccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 400 SIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
..+.+|.+.|++++|+|++ ++|++|+.|++|++||+.++... .....+.+|...|++++|+|+++ +|++|+.|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCc
Confidence 3588999999999999975 79999999999999999865432 12235789999999999999999 8999999999
Q ss_pred EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEEEcCCC--
Q 001190 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~~s~~g-- 550 (1128)
|++|| .++..+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999 88999999999999999999977 6689999999999999997543322221 3466789999999987
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
..+++++ .|+.|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 532 ~~l~s~s----~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~ 603 (694)
T 3dm0_A 532 PTIVSAS----WDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---S 603 (694)
T ss_dssp CEEEEEE----TTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---S
T ss_pred ceEEEEe----CCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---C
Confidence 4678877 489999999999999999999987 8999999999999999999999999999999988776543 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|.+++|+|++.++++++ ++.|++||+.++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 689999999998888776 566999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=319.15 Aligned_cols=298 Identities=14% Similarity=0.223 Sum_probs=233.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC------------cc
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 408 (1128)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 56788999999999999 789999999999999988763110000 0000123477898 88
Q ss_pred eEEEEEccCC--CEEEEEeCCCeEEEEEccCCCccee------------------------------------c-eeecc
Q 001190 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQIDA 449 (1128)
Q Consensus 409 V~~l~~spdg--~~las~~~d~~i~vwd~~~~~~~~~------------------------------------~-~~~~~ 449 (1128)
|.+++|+|++ .+|++++.|+.|++||+.+++.... . ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 8999999999999999987443100 0 11368
Q ss_pred cccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEE-------EecCCCCCeEEEeccCCCCc-cEEEEEeccCc
Q 001190 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDGK 519 (1128)
Q Consensus 450 h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~ 519 (1128)
|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|++ ++ .+|++++.||.
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence 999999999999999 78888 799999999 4 344444 3678999999999987 44 79999999999
Q ss_pred EEEEecCCCCc----eeeecCCCC------------eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEecc
Q 001190 520 IKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG 582 (1128)
Q Consensus 520 i~~wd~~~~~~----~~~~~~~~~------------~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~ 582 (1128)
|++||++.... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998776 567777765 899999999999999886 38999999997 888888888
Q ss_pred ccCCc--------------eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----------------------
Q 001190 583 FRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE---------------------- 626 (1128)
Q Consensus 583 ~~~~~--------------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1128)
|.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75310 223899999999999999999999999998876422110
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 627 --------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 627 --------~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.....|..++|+|++++||+++.++ +++|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2234678899999999999998775 777764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=295.84 Aligned_cols=249 Identities=14% Similarity=0.194 Sum_probs=206.4
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--C
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 418 (1128)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+|+ |
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~-----------------~~~~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBC-----------------CCEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcE-----------------EEEEEccccCCeEEEEecCCCcC
Confidence 36999999999999999 7899999999999999754211 11248899999999999864 8
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCC--eEEEecCC
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGH 493 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~--~~~~~~~h 493 (1128)
++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ |. +|++++.|++|++|| .++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999987522 22257789999999999998 77 899999999999999 5443 24677899
Q ss_pred CCCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCC----ceeeecCCCCeEEEEEEcCCC---CeEEE
Q 001190 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLFS 555 (1128)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~i~~~~~s~~g---~~l~~ 555 (1128)
...|.+++|+|.. ++++|++|+.|++|++||++... ....+..|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999998752 35799999999999999998766 345677899999999999995 78888
Q ss_pred eeeccCCCceEEEEeCCCCce---eeEe--ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 556 CGTSKDGDSFLVEWNESEGTI---KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
++ .|+.|++||+.++.. ...+ ..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 225 ~s----~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VS----QDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EE----TTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EE----CCCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 87 499999999987531 1222 34443 78999999999999999999999999976
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=310.85 Aligned_cols=252 Identities=9% Similarity=0.070 Sum_probs=216.8
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc---ceeceeecccccceeEEEEecC----C---CeEEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~d----~---~~~~l~ 469 (1128)
..+.+|.+.|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 45889999999999999 8999999999999999999871 1112257799999999999999 8 8 899
Q ss_pred EecCCCeEEEEe-cCCCe-----EEEecCC-----CCCeEEEeccCC--CCccE-EEEEeccCcEEEEecCC------CC
Q 001190 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~~wd~~~------~~ 529 (1128)
+++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 77776 8888888 589999999822 36788 99999999999999988 55
Q ss_pred cee-----ee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc---c---cCCceeEE
Q 001190 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (1128)
Q Consensus 530 ~~~-----~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~v~~~ 591 (1128)
... .+ ..+...|.+++|+|++ ++++++ .++.|++||+++++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----NNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----TTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----CCCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 544 55 4477789999999999 888887 489999999999999999998 7 55 89999
Q ss_pred EEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCC-----------CCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 592 ~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999888887511 345899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+.++
T Consensus 320 ~~~~ 323 (397)
T 1sq9_A 320 VKTK 323 (397)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=303.13 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=214.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+..|.++|++++|+|+|++||+|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 55599999999999999999999999999999999876 343 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEE--EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCCCCe
Q 001190 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 480 Wd-~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|| .+++... .+.+|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6666443 4477999999999977 668999999999999999988764 2233556789999999999999
Q ss_pred EEEeeeccCCCceEEEEeC------------------CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
+++++ .++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGS----CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEE----TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEc----CCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99988 4899999995 46788888888776 8999999999999999999999999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988887554 479999999999988887 899999999987
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=306.96 Aligned_cols=302 Identities=16% Similarity=0.189 Sum_probs=241.7
Q ss_pred eecCCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-C
Q 001190 340 SLHQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 417 (1128)
..+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +
T Consensus 39 ~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCC
Confidence 335999999999999 998 789999999999999998876542111000 0000111356999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+.+|++++.||.|++||+.+++.+.. + .+...+.++.|++ ++. ++++++.|+.|++|| .+++.+..+.+|
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADV---F-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEE---E-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred CcEEEEEeCCCeEEEeeCCCCcccee---c-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 88999999999999999999876653 2 4778899999998 445 789999999999999 889999999999
Q ss_pred CCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCce-eee---------------cCCCCeEEEEEEcCCCCeEEEe
Q 001190 494 EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSR-VDY---------------DAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~-~~~---------------~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
...|.+++|++. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|++++++++
T Consensus 186 ~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 186 RQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 999999999874 45 6999999999999999876522 222 4567789999999999999999
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccC----CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..+ ...|
T Consensus 264 ~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v 337 (408)
T 4a11_B 264 GT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTV 337 (408)
T ss_dssp ET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCE
T ss_pred cC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC--CCeE
Confidence 84 88999999999887665543321 12222333344567788888999999999999999988755 4589
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+++|+|++++|++++.||.|++|++.+..
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 999999999999999999999999998873
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=304.37 Aligned_cols=250 Identities=15% Similarity=0.236 Sum_probs=212.6
Q ss_pred eeccCCCcceEEEEEccC----CCEEEEEeCCCeEEEEEccCCCcceeceeec--ccccceeEEEEecC----CCeEEEE
Q 001190 400 SIFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~fs~d----~~~~~l~ 469 (1128)
.+..+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+..+. .|...|++++|+|+ +. +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999994 4566667777799999999887766543332 36788999999999 55 799
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~ 545 (1128)
+|+.|+.|++|| .+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||++.++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 999999999999 889999999999999999999763 4579999999999999999988877777 67888999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc----------------------------ccCCceeEEEEeCCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~ 597 (1128)
|+|+++++++++. ++.|++||+.+++....+.. |.. .+.+++|+ +
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~ 241 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--G 241 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--T
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--C
Confidence 9999999999984 89999999998876654443 554 79999998 6
Q ss_pred CEEEEEECCCcEEEEECCCCee--------------eEEEecCCCCCCcceEEEcCC--CCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 7999999999999999987643 5555544 447999999999 999999999999999999776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-31 Score=291.15 Aligned_cols=280 Identities=15% Similarity=0.264 Sum_probs=235.4
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1128)
.++|+||+++ +||+| .|++|+|||+.+|+.+.. ..+.+|...|++++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 67887 599999999999987642 125678999999999999999999999
Q ss_pred CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEeccC
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
||+|++||+++++.++ .+.+|...+.++.+ ++. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998766 57789988877665 456 799999999999999 44566788899999999999966
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCce----eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
++.++++++.||.|++||+.+++.. .....+...|.++.++|++..++.... +..++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 6689999999999999999876543 345566778999999998876654332 235889999999988877666
Q ss_pred ccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.... .+..+.|+++++.+++++ .|+.|++||+.+++.+..+..| ...|.+++|+|++++|++|+.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 588899999999988865 7999999999999999988755 458999999999999999999999999998
Q ss_pred cc
Q 001190 659 AI 660 (1128)
Q Consensus 659 ~~ 660 (1128)
.+
T Consensus 314 ~~ 315 (318)
T 4ggc_A 314 FE 315 (318)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=315.21 Aligned_cols=223 Identities=9% Similarity=0.012 Sum_probs=181.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457999999999999999999999999 755554 346999999999999998 377777777444
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-----eEEEEEEcCCCCeEEEeeec
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----~i~~~~~s~~g~~l~~~~~~ 559 (1128)
..+..+ .|...|.+++|+| +|.+|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-- 148 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-- 148 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE--
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc--
Confidence 444443 4588999999977 778999999999999999544 333444 444 599999999999999998
Q ss_pred cCCCceEEEEeCCCCce-------eeEe----ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee---EEEec
Q 001190 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL---TSTDA 625 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---~~~~~ 625 (1128)
.|+.|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++... ..+..
T Consensus 149 --~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 149 --EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp --TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred --CCCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 499999999998863 5666 55554 89999999998 889999999999999887742 34432
Q ss_pred CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++...|.+++|+ ++.|++++ +++|++|++.++
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 334579999999 68999987 699999998776
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=315.31 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=201.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC--CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+..|.++|++++|+|+|++||+|+.|+.|+|||+.++ +.+. .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 4447789999999999999999999999999999987 4443 5789999999999999999 7999999999999
Q ss_pred Ee-cCCC---eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecC-CCCeEEEEEEcCCCC
Q 001190 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1128)
Q Consensus 480 Wd-~~g~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~~i~~~~~s~~g~ 551 (1128)
|| .+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6788889999999999977 668999999999999999988763 556666 888999999999999
Q ss_pred eEEEeeeccCCCceEEEEeCC------------------CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
+|++++. ++.|++||+. .++++..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999984 8999999985 35566666 6655 899999999999999999999999999
Q ss_pred CCCCee----eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666644 4479999999999999998876666 66554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=301.64 Aligned_cols=293 Identities=12% Similarity=0.133 Sum_probs=204.4
Q ss_pred ccceeEEEEecCCCeEEEEEecCCC-------eEEEEe-cCCCe----------EEEecCCCCCeEEEeccCCCCccEEE
Q 001190 451 VGAVNDLAFAYPNKLLCVVTCGDDK-------LIKVWE-LSGRK----------LFNFEGHEAPVYSICPHHKENIQFIF 512 (1128)
Q Consensus 451 ~~~v~~l~fs~d~~~~~l~s~s~d~-------~i~vWd-~~g~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~ 512 (1128)
..||++++|+|||+ +|++|+.|. .|++|+ ..+.. ...+.+|...|.++++. +..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence 45899999999999 899987543 599999 43321 13467788888888763 34677
Q ss_pred EEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee----eEec----ccc
Q 001190 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK----RTYA----GFR 584 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~----~~~~----~~~ 584 (1128)
+|+.++..++|... .++.+++|++.+.... .... ...
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 76655444333221 1223333333222110 0000 011
Q ss_pred CCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 585 KKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
...+.+++|+|||+++++++ .|+.|+|||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 12477899999999987655 6899999999999998888633 369999999999999999855 56666654431
Q ss_pred cccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
......
T Consensus 209 ~~~~~~-------------------------------------------------------------------------- 214 (365)
T 4h5i_A 209 CIARKT-------------------------------------------------------------------------- 214 (365)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
. .+|...
T Consensus 215 --------------~---~~~~~~-------------------------------------------------------- 221 (365)
T 4h5i_A 215 --------------D---FDKNWS-------------------------------------------------------- 221 (365)
T ss_dssp --------------C---CCTTEE--------------------------------------------------------
T ss_pred --------------c---CCCCCC--------------------------------------------------------
Confidence 0 013333
Q ss_pred ccccCCCCCCCeeEEEeccCCCeEEEEe-CC----eEEEEECCCceE----EEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKV----MTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----~i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
|.+++|+|||+++++++ ++ .+++|++..... ...+.+|...|++++|+| ++++||+|+.
T Consensus 222 -----------v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~ 289 (365)
T 4h5i_A 222 -----------LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASN 289 (365)
T ss_dssp -----------EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEET
T ss_pred -----------EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcC
Confidence 44455555555555444 32 355566554432 345678999999999999 9999999999
Q ss_pred CCcEEEEecccceeeec-ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 894 DSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
|++|+|||+.+++++.. +.+|...|++|+|+|||++|||+|.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999887 5799999999999999999999999999999999653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=302.79 Aligned_cols=301 Identities=11% Similarity=0.173 Sum_probs=233.3
Q ss_pred CCcccEEEEEEecCcceEEEee-c---cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 762 DTSSKVVRLLYTNSAVGLLALG-S---NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~-~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
+|...|.+++|+|++..+++++ . ||.|++|++.... ....... .|...|.++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------------------~~~~~~~--~~~~~v~~~ 71 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------------------LKLLREI--EKAKPIKCG 71 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------------------EEEEEEE--EESSCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------------------ccceeee--cccCcEEEE
Confidence 3999999999999997666544 4 8999999875321 1111111 278899999
Q ss_pred EeccC---CCeEEEEe-CCeEEEEECCCce-EEEEeeCCCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 838 ALSKN---DSYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLA------FHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 838 ~~s~d---g~~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~------~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
+|+|+ |++|++++ ||.|++||+.+++ .+..+.+|...|.+++ |+| ++++|++++.||.|++||+.+++
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCC
Confidence 99999 69999998 8999999999988 8889999999999995 467 89999999999999999999886
Q ss_pred -eeeccccccc----CeeEEE----EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC---C
Q 001190 907 -VKSKLKGHQK----RITGLA----FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA---D 974 (1128)
Q Consensus 907 -~~~~l~~h~~----~V~~l~----~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~---d 974 (1128)
.+..+..|.+ .|.+++ |++++++|++++.|+.|++||+.+++...... + ...+.+++|+| +
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~-~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN------I-KNGVCSLEFDRKDIS 223 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE------C-SSCEEEEEESCSSSS
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC------C-CCceEEEEcCCCCCC
Confidence 6777766655 789998 78999999999999999999999977532211 1 26799999999 8
Q ss_pred CCEEEEEe-cCeEEEEecCCcccccccc--cCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCceEEEeCCCCC
Q 001190 975 QVRMLVVH-ETQLAIYDASKMERIRQWT--PQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050 (1128)
Q Consensus 975 ~~~l~~~~-d~~i~v~d~~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 1050 (1128)
+.+++++. |+.|++||+.+++.+..+. ....|...|.+++|+|+++ +|++++.||.|++||+.++...........
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 99999875 9999999999888776654 1123589999999999999 899999999999999987654322111000
Q ss_pred CCC-------cccCCCCccceEEEEEecCCCCEEE-EEECCCcEEEEcCCCCC
Q 001190 1051 LSP-------SVLNGSQTVYPLVVAAHPLEPNQFA-IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1051 ~~~-------~~~~~~~~~~~~~~~~~p~~~~~l~-s~~~dg~i~iWd~~~~~ 1095 (1128)
... ...-..|...+.+++|+| ++.+|+ +++.||.|++||+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 000 000014566789999999 577776 89999999999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=288.86 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=211.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ +|++++.|+.|++
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~ 85 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMING 85 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEE
Confidence 358899999999999 999999999999999999998876554 4678999999999999999 8999999999999
Q ss_pred Ee-cC---CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC-CCCeEE
Q 001190 480 WE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (1128)
Q Consensus 480 Wd-~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~ 554 (1128)
|+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99 33 3567888999999999998 346999999999999998 5666777888999999999988 899999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+++ .++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 160 ~~~----~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~ 230 (313)
T 3odt_A 160 TAS----ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYC 230 (313)
T ss_dssp EEE----TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEE
T ss_pred EEE----CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEE
Confidence 887 489999999 66777788874555899999999987 9999999999999999999998887554 48999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++ .+++++.||.|++||+.++
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999 5889999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=295.69 Aligned_cols=279 Identities=10% Similarity=0.106 Sum_probs=237.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-E
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 420 (1128)
+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5999999999999998 78999999999999998876211 0112557999999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCCcceeceeecc--cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC---------CCeE
Q 001190 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1128)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~---------g~~~ 487 (1128)
|++|+.||.|++||+ .+++.. .+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 887542 4778 999999999999 87 899999999999999 66 6666
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCc--eeeecCCCCeEEEEEEcC-CCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~--~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~ 563 (1128)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++ .+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~----~d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS----ID 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE----TT
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe----cC
Confidence 6666 889999999975 33 99999999999999987 443 334556677899999999 999999988 48
Q ss_pred ceEEEEeCCCC------ceeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 564 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
+.|++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ +.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cC
Confidence 99999999887 77888887753 37899999999999999999999999999999998887654 14
Q ss_pred CCcceEEEcCCCCEEEEEEcCCc-EEEE
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~-i~iw 656 (1128)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 4788988 99999999999998 4433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-31 Score=305.55 Aligned_cols=273 Identities=19% Similarity=0.281 Sum_probs=236.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|...|.|++| +|+ ++++|+.||.|+|||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 47788999888 777 789999999999999999887643 7889999999999 88999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE---EEecCCCCCe
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~---~~~~~h~~~v 497 (1128)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998765 5779999999999974 4 799999999999999 666654 6788999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.++++ ++.++++|+.||.|++||++++.....+..|...|.++.+ +++++++++ .++.|++||+.+++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~----~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS----SDNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE----TTSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe----CCCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 467888887 4899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe---------eeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
..+.+|.. .+.+++| ++.+|++|+.||.|++||+.++. .+..+..+ ...|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEe
Confidence 99999887 7888888 78899999999999999997665 56666544 458999999 778999999
Q ss_pred cCCcEEEEEcccCc
Q 001190 649 ADNGFKILANAIGL 662 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~ 662 (1128)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=296.10 Aligned_cols=248 Identities=15% Similarity=0.218 Sum_probs=203.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 6999999999999999 78999999999999998775321 123789999999999986 489
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCe---EEEecCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGH 493 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~---~~~~~~h 493 (1128)
+||+|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999987532 22357799999999999998 66 799999999999999 54432 3556789
Q ss_pred CCCeEEEeccCCC---------------CccEEEEEeccCcEEEEecCCCC---ceeeecCCCCeEEEEEEcCCC----C
Q 001190 494 EAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG----S 551 (1128)
Q Consensus 494 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~s~~g----~ 551 (1128)
...|.+++|++.. ++.+|++|+.|+.|++||++... ....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 14689999999999999997542 445677888899999999987 7
Q ss_pred eEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
+|++++ .|+.|++|++.+.. ....+..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 230 ~las~s----~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCS----QDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEE----TTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEc----CCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 888888 49999999987631 2234455554 89999999999999999999999999975
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=295.68 Aligned_cols=250 Identities=17% Similarity=0.292 Sum_probs=205.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47889999999999999999999999999999999987532 22368899999999999863 77 799999999999
Q ss_pred EEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCC---
Q 001190 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1128)
Q Consensus 479 vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 549 (1128)
+|| .++ ..+..+.+|...|.+++|+|+.++.+|++++.|+.|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 666 4667888999999999999876678999999999999999987543 2345567778999999998
Q ss_pred --------------CCeEEEeeeccCCCceEEEEeCCCC---ceeeEeccccCCceeEEEEeCCC----CEEEEEECCCc
Q 001190 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1128)
Q Consensus 550 --------------g~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~ 608 (1128)
+++|++++ .|+.|++||+..+ +.+..+.+|.. .|.+++|+|++ .+|++++.||.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs----~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGG----CDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCB----TTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEec----CCCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 46888887 4899999999765 46677888876 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|++|++.+. . ....+.. +...|.+++|+|++++|++++.|+.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998763 1 1222332 345799999999999999999999999999753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=302.94 Aligned_cols=294 Identities=13% Similarity=0.160 Sum_probs=239.6
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~ 425 (1128)
...++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASGS 101 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence 456889999876677789999999999965433211 1123788999999999999 999999999
Q ss_pred CCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe--cCCCCCeE
Q 001190 426 TKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPVY 498 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--~~h~~~v~ 498 (1128)
.||.|+|||+.++... .....+.+|...|++++|+|++.. +|++++.|++|++|| .+++.+..+ .+|...|.
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 9999999999987421 223367899999999999999843 799999999999999 889999999 88999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCe-EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~-i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
+++|++ ++.+|++++.||.|++||++++.....+ ..+... +.++.|+|++++++++. +...++.|++||+.+++.
T Consensus 181 ~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 181 SVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCSS
T ss_pred EEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCccccC
Confidence 999987 6689999999999999999988877777 566654 89999999999888872 111489999999998765
Q ss_pred -eeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee-eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 577 -KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 577 -~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
+..........+..++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.+
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~ 335 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIA 335 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEE
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeE
Confidence 4444433334788999999999997654 799999999998874 445544445568999999999988775 56799
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.++
T Consensus 336 ~~~~l~~~ 343 (402)
T 2aq5_A 336 RFYKLHER 343 (402)
T ss_dssp EEEEEETT
T ss_pred EEEEcCCC
Confidence 99999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=298.91 Aligned_cols=285 Identities=15% Similarity=0.263 Sum_probs=232.6
Q ss_pred Cccc--EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSK--VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~--i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
|... +..+.++ +..+++++.||.|++|++... ........ .|...|.+++|+
T Consensus 90 ~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~----------------------~~~~~~~~--~~~~~v~~v~~s 143 (401)
T 4aez_A 90 IIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSG----------------------SVSALAET--DESTYVASVKWS 143 (401)
T ss_dssp CCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTC----------------------CEEEEEEC--CTTCCEEEEEEC
T ss_pred CcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCC----------------------cEeEeeec--CCCCCEEEEEEC
Confidence 4444 3445555 466889999999999986532 21111111 278889999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc-cceeeecccccccCe
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRI 918 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V 918 (1128)
|++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+. .+..+..+.+|.+.|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 9999999998 8999999999999999999999999999994 4699999999999999998 567788899999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE-EEEEe---cCeEEEEecCCc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR-MLVVH---ETQLAIYDASKM 994 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~---d~~i~v~d~~~~ 994 (1128)
.+++|+|++++|++++.|+.|++||+.+++....+ ..+. ..+.+++|+|++.. +++++ |+.|++||+.++
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----TNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-----CCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-----cCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 99999999999999999999999999987654332 2232 78999999998754 44453 899999999999
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEE--ecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFAT--FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
+.+..+.. ...|.+++|+|++++++++ +.||.|+|||+.+++....... ..|...+.+++|+|
T Consensus 295 ~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----------~~h~~~v~~~~~s~- 359 (401)
T 4aez_A 295 ARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----------PAHDTRVLYSALSP- 359 (401)
T ss_dssp CEEEEEEC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----------ECCSSCCCEEEECT-
T ss_pred CEEEEEeC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe----------cCCCCCEEEEEECC-
Confidence 88887753 6789999999999999994 4899999999999766554331 14566778999999
Q ss_pred CCCEEEEEECCCcEEEEcCCCCCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
++.+|++++.||.|++|++.+++..
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC----
T ss_pred CCCEEEEEeCCCcEEEEECCCCccc
Confidence 6999999999999999999998754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-30 Score=296.62 Aligned_cols=283 Identities=16% Similarity=0.224 Sum_probs=234.5
Q ss_pred cEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
.++.++|++++ +++++.|++|++||... |.+.. .+....|...|++++|+|||++
T Consensus 107 y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~-~~~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQ-LLQMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEE-EEECCSTTCCEEEEEECTTSSE
T ss_pred cceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEE-EEEecCCCCcEEEEEECCCCCE
Confidence 45678999765 44555699999997643 32221 1111137888999999999999
Q ss_pred EEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccccCeeEEEE
Q 001190 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 846 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 923 (1128)
|++|+ ||.|++||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus 162 lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence 99998 8999999999999999999999999998884 579999999999999998864 556788999999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE-EEE---ecCeEEEEecCCcccccc
Q 001190 924 STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM-LVV---HETQLAIYDASKMERIRQ 999 (1128)
Q Consensus 924 s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l-~~~---~d~~i~v~d~~~~~~~~~ 999 (1128)
+|+++++++++.|+.+++|+..+++....... ....+. ..+..++|+|++..+ +++ .|+.|++||+.++..+..
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~-~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-EECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred cCCCCeeeeeeccccceEEeeccccccceeee-eecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 99999999999999999999998764332221 122232 789999999976544 443 389999999999998887
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEe--cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
+.. ...+.++.|+++++.+++++ .||.|+|||+.+++.+..+. +|...|++++|+| |+.+|
T Consensus 317 ~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~------------gH~~~V~~l~~sp-dg~~l 379 (420)
T 4gga_A 317 VDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK------------GHTSRVLSLTMSP-DGATV 379 (420)
T ss_dssp EEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC------------CCSSCEEEEEECT-TSSCE
T ss_pred ecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcC-CCCEE
Confidence 765 56899999999999988765 79999999999999999988 6777889999999 69999
Q ss_pred EEEECCCcEEEEcCCCCC
Q 001190 1078 AIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~~~~ 1095 (1128)
++|+.||+|+|||+.+.+
T Consensus 380 ~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 380 ASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEETTTEEEEECCSCSS
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999998755
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=294.17 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=237.8
Q ss_pred ceEEee-cCCCcEEEEEEeCC---CCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceE
Q 001190 336 TVAVSL-HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspd---g~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
.....+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|.+.|.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v~ 90 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPVL 90 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCEE
Confidence 344444 49999999999999 56 789999999999999987 44331 23778999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE--ecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f--s~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|++++| ++++. +|++++.|+.|++|| .+++.+
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE
Confidence 99999999999999999999999999987554 5679999999999 88888 899999999999999 888888
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCCe----EEEeeeccC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTSKD 561 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~~----l~~~~~~~~ 561 (1128)
..+..|. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.+++.. +++++
T Consensus 165 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (368)
T 3mmy_A 165 MVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS---- 235 (368)
T ss_dssp EEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE----
T ss_pred EEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec----
Confidence 8888765 566666643 478899999999999998766554332 23446677777666654 77777
Q ss_pred CCceEEEEeCCCC---ceeeEeccccCC-----------ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC
Q 001190 562 GDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 562 ~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 627 (1128)
.++.|++||+... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 314 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL- 314 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-
Confidence 4999999999987 567777777653 5899999999999999999999999999999998888754
Q ss_pred CCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 628 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
...|.+++|+|++++|++++.|+..+.|++
T Consensus 315 -~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 -DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -CCCceEEEECCCCCeEEEEecccccccccc
Confidence 448999999999999999999886555443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=279.51 Aligned_cols=282 Identities=16% Similarity=0.240 Sum_probs=231.8
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
.+.++||+++ +++++.|++|++||+.. |+++. .+....|...|.+++|+|++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~-~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQ-LLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEE-EEECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEE-EEEecCCCCeEEEEEECCCCCEE
Confidence 4678999887 44556799999997643 33221 11122388899999999999999
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccccCeeEEEEc
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 924 (1128)
++|+ ||+|++||+.+++++..+.+|...+.++.+ ++.++++|+.++.+++|+...+ ..+..+.+|...+..+.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9998 899999999999999999999998887766 4579999999999999998865 5567788999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-E---ecCeEEEEecCCccccccc
Q 001190 925 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V---HETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 925 ~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~---~d~~i~v~d~~~~~~~~~~ 1000 (1128)
+++++|++++.|+.|++||+.+++.......... .+ ...+..++++|++..++. + .++.|++||..........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CC-CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeec-cc-CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999999998775443322221 22 267889999998765543 2 3789999999988776654
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEe--cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.. ...+..+.|+++++.+++++ .|+.|+|||+.+++.+..+. +|...|.+++|+| ++.+|+
T Consensus 238 ~~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~------------gH~~~V~~l~~sp-dg~~l~ 300 (318)
T 4ggc_A 238 DA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK------------GHTSRVLSLTMSP-DGATVA 300 (318)
T ss_dssp EC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC------------CCSSCEEEEEECT-TSSCEE
T ss_pred cc----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcC-CCCEEE
Confidence 43 67899999999999888755 79999999999999999988 5677889999999 699999
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
+|+.||+|+|||+.+.+
T Consensus 301 S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 301 SAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTEEEEECCSCCC
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999998765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=289.96 Aligned_cols=297 Identities=9% Similarity=0.110 Sum_probs=218.6
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--C
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 417 (1128)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence 346999999999999999 789999999999999987653211 1124778999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcc------eeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
+++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. +|++++.|+.|++|| .+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 999999999999999999987421 233467799999999999999 88 899999999999999 7776554
Q ss_pred Eec-------------CCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCC--
Q 001190 489 NFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 489 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g-- 550 (1128)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 332 68889999999874 1257999999999998888776655 44566788899999999998
Q ss_pred --CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE----ECCCcEEEEECCCCeeeEEEe
Q 001190 551 --SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 551 --~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
++|++++ .|+.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+.
T Consensus 229 ~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 229 WYQLIATGC----KDGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp SSEEEEEEE----TTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred cceEEEEEc----CCCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 7888887 489999999987765444333222 22233333333333333 344556667666667777776
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+ ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 ~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 304 DH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 44 458999999999999999999999999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=294.71 Aligned_cols=309 Identities=13% Similarity=0.137 Sum_probs=227.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCC-----------
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE----------- 831 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 831 (1128)
+.+.|.+++|+|+|.+|++++.||.|++|++............ .......+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------~~~~~~~~~~--h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------EYNVYSTFQS--HEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------CEEEEEEEEC--CCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------ceeEeccccc--ccccccccccccc
Confidence 6789999999999999999999999999998754311000000 0000111222 55
Q ss_pred -CCeeEEEeccCC--CeEEEEe-CCeEEEEECCCceEE---------------------------------------EE-
Q 001190 832 -EAVPCIALSKND--SYVMSAT-GGKISLFNMMTFKVM---------------------------------------TT- 867 (1128)
Q Consensus 832 -~~v~~~~~s~dg--~~la~~~-dg~i~vwd~~~~~~~---------------------------------------~~- 867 (1128)
..|.+++|+|++ .+|++++ |+.|++||+.+++.. ..
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999998 7888887 899999999875442 12
Q ss_pred eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeee-------cccccccCeeEEEEcCCC-CEEEEEcCCCc
Q 001190 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS-------KLKGHQKRITGLAFSTSL-NILVSSGADAQ 938 (1128)
Q Consensus 868 ~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~~~Dg~ 938 (1128)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|.+++|+|++ .+|++++.||.
T Consensus 173 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 173 ANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp CSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred ccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 357999999999999 89999998 799999999994 44444 477899999999999998 99999999999
Q ss_pred EEEEECCCCcccceeEEeecCCCCC-----------CCccEEEEcCCCCEEEEEecCeEEEEecCC-cccccccccCCCC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTP-----------TGDTRVQFNADQVRMLVVHETQLAIYDASK-MERIRQWTPQDAL 1006 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~~~h 1006 (1128)
|++||+.+++..... ......+.. ..+.+++|+|+|++|++++++.|++||+.+ ++.+..+..+...
T Consensus 251 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 251 IRLCDMRASALCDRH-SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEEETTTCSSSCTT-CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEEECcCCccccce-eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999987752110 111122221 279999999999999998889999999997 7777777665311
Q ss_pred CC------------CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc--------------------
Q 001190 1007 SA------------PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-------------------- 1054 (1128)
Q Consensus 1007 ~~------------~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------------- 1054 (1128)
.. .+..++|+|||++|++|+.||.|+|||+.+++.+............
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 11 1345999999999999999999999999999886433211100000
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.........+..++|+| ++++|++++.++ +++|.
T Consensus 410 ~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp GGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred ccccccCCceeEEEECC-CCCEEEEEecce-eeeec
Confidence 00012233568899999 689999988876 56664
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=290.86 Aligned_cols=251 Identities=15% Similarity=0.203 Sum_probs=209.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 419 (1128)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|.+.|++++|+|+ ++
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCCC
Confidence 5999999999999999 78999999999999998432211 1237789999999999987 99
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCC--CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g--~~~~~~~~h~ 494 (1128)
+|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++|| ..+ .....+.+|.
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 9999999999999999998622 22257789999999999999 88 899999999999999 555 3456778899
Q ss_pred CCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCCce----eeecCCCCeEEEEEEcCC---CCeEEEe
Q 001190 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1128)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~i~~~~~s~~---g~~l~~~ 556 (1128)
..|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++++++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 999999998742 5689999999999999999876543 456678889999999999 8899988
Q ss_pred eeccCCCceEEEEeCCCCce---eeEe--ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNESEGTI---KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+ .++.|++||+.++.. ...+ ..+.. .+.+++|+|++++|++++.||.|++|++....
T Consensus 228 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 228 S----QDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp E----TTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred e----CCCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 7 489999999998742 1222 22443 79999999999999999999999999997543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=280.25 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=209.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+|.+.|++++|+|++++|++++.|+.|++||+.+++.......+.+|...|++++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999988732222345689999999999999882 378899999999999
Q ss_pred c-CCCeEEEecC--CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC---------CCceeeecCCCCeEEEEEEcCC
Q 001190 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 482 ~-~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||++. ......+. +...+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 57999999999999999987 55555555 7778999999998
Q ss_pred CCeEEEeeeccCCCceEEEEeCCC-Cce-eeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCC------eee
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI-KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NIL 620 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~------~~~ 620 (1128)
+ +++++ .++.|++||+.+ +.. ...........+.+++|+| +++++++++.||.|++|++... +..
T Consensus 162 ~--l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 162 R--LIVGM----NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp E--EEEEE----STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred c--EEEEe----CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 8 66666 488999999998 553 2223333334799999999 9999999999999999999887 667
Q ss_pred EEEecCCC-------CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 77765532 347999999999999999999999999998765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=286.62 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=216.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++||+|+.||.|+|||+..+.. .....+.+|.+.|++++|+++ +. +|++|+.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4889999999999999999999999999999999984322 223357899999999999987 77 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcC-----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (1128)
+|| .+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886437899999999999999998874 3446677888999999999
Q ss_pred --------CCCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCC---CCEEEEEECCCcEEEEE
Q 001190 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 549 --------~g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd 613 (1128)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6899999884 8899999998764 4466777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++. .........+...|.+++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98874 2333333345568999999999999999999999999999764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=287.96 Aligned_cols=233 Identities=17% Similarity=0.293 Sum_probs=207.7
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
.+|...|.|++| ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457778998887 89999999999999999999988765 57899999999999 677 899999999999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce---eeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
.+++.+..+.+|...|.+++|+ +..+++|+.||.|++||+...... ..+..|...|.++++ +++++++++
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~- 273 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS- 273 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence 8999999999999999999984 258999999999999999887665 567788889999998 788999988
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|++||+.+++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..+ ...|.+++|
T Consensus 274 ---~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~- 344 (435)
T 1p22_A 274 ---GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF- 344 (435)
T ss_dssp ---TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC-
T ss_pred ---CCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe-
Confidence 499999999999999999999887 78888884 689999999999999999999999888754 447899988
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=285.13 Aligned_cols=299 Identities=12% Similarity=0.072 Sum_probs=233.0
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc---eeccccccccccccc----------------------------
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (1128)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 65655 57899999999998 4322 211000
Q ss_pred ------------CccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEcc--CCCcceeceeecccccceeEEE
Q 001190 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1128)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~ 458 (1128)
..........+|.+.|.+++|+|+|++| |+|+.||.|+|||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 777766421 126778999999
Q ss_pred EecCCCeEEEEEecCCCeEEEEe-cCCCeEE----EecCCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCCcee
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~ 532 (1128)
|+|+++ +|++|+.|+.|++|+ .++.... .+.+|...|++++|+++ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78889999999999874 126899999999999999999888776
Q ss_pred e-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc------------------------CCc
Q 001190 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (1128)
Q Consensus 533 ~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 587 (1128)
. +..|...|.+++|+ ++++|++++ .|+.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAG----GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEE----SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEe----CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 999999998 48999999999999888876431 235
Q ss_pred eeEEEEeCCCCEEEEEE-CCCcEEEEEC--CCC---eeeEEEecCCCCCCcceEEEcCCCCEEEEEEc------CCcEEE
Q 001190 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1128)
Q Consensus 588 v~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~------dg~i~i 655 (1128)
+..++|+|+++++++++ .|+.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666666654 47899999996544443332 455888
Q ss_pred EEcccC
Q 001190 656 LANAIG 661 (1128)
Q Consensus 656 w~~~~~ 661 (1128)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=275.31 Aligned_cols=263 Identities=13% Similarity=0.117 Sum_probs=208.9
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----eEEEEeeCCCCCeeEEEEcCC-CCCEEEEEeCCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~-d~~~lasg~~dg~v~iwd~~ 903 (1128)
|...|++++|+|++++|++++ ||.|++||+.++ +....+.+|...|++++|+|. ++++|++|+.||.|++||+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 999999999999999999998 899999999876 567788899999999999984 48999999999999999998
Q ss_pred cc---------eeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccceeEEee-------cCCCCCCC
Q 001190 904 VD---------EVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKSVTIHI-------PAGKTPTG 965 (1128)
Q Consensus 904 ~~---------~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~ 965 (1128)
++ +.+..+.+|.+.|.+++|+|+ +.+|++++.||.|++||+.+++......... ........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 87 567888899999999999999 9999999999999999999887665543211 11122378
Q ss_pred ccEEEEcCC---CCEEEEEe-cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCC----CEEEEEecCCcEEEEe
Q 001190 966 DTRVQFNAD---QVRMLVVH-ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNS----QLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 966 v~~v~~s~d---~~~l~~~~-d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg----~~l~t~~~dg~i~vwd 1035 (1128)
+.+++|+|+ +.+++++. ++.+.+|+...+.. +..+. .|...|.+++|+|++ ++|++++.||.|++||
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 899999997 88888876 67776666665554 33333 458999999999998 8999999999999999
Q ss_pred cCCCceEEEeCCCCCC----------------------------------CCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1036 ADTLRLRCYIAPSTYL----------------------------------SPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
+.++............ .....-..|...+.+++|+| ++.+|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~ 325 (351)
T 3f3f_A 247 ITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAG 325 (351)
T ss_dssp EEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEE
T ss_pred CCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEec
Confidence 9876321111000000 00000024666789999999 689999999
Q ss_pred CCCcEEEEcCCCCCC
Q 001190 1082 TDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1082 ~dg~i~iWd~~~~~~ 1096 (1128)
.||.|++|++.+++.
T Consensus 326 ~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 326 DDGKVRLWKATYSNE 340 (351)
T ss_dssp TTSCEEEEEECTTSC
T ss_pred CCCcEEEEecCcCcc
Confidence 999999999998763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=277.47 Aligned_cols=303 Identities=13% Similarity=0.122 Sum_probs=230.6
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCC-CCce-eeecCCCCeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT-MGSR-VDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~-~~~~-~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|+ ...+.+..+.+|.+.|++++|+++. +|.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 45 5667788899999999999998742 158999999999999999987 3333 567788999999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE--eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
++ .++.|++||+.+++.+. +..|.. .+.+++| ++++.+|++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~----~dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 AS----CDKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EE----TTSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred Ec----CCCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 88 48999999999998776 445555 8999999 8999999999999999999999999888887654 355
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
++.+. ...+++++.++.+.+|++............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 55554 458889999999999998654221111000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
.+...+..+.+.++...
T Consensus 210 ------------------------------------------------~~~~~~~~~~~~~~~~~--------------- 226 (368)
T 3mmy_A 210 ------------------------------------------------PLKHQHRCVAIFKDKQN--------------- 226 (368)
T ss_dssp ------------------------------------------------SCSSCEEEEEEEECTTS---------------
T ss_pred ------------------------------------------------cccCCCceEEEcccCCC---------------
Confidence 01111222222222211
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc---eEEEEee
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF---KVMTTFM 869 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~ 869 (1128)
++ ..+++++ ||.|++||+... +....+.
T Consensus 227 ----------------------------------------------~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 227 ----------------------------------------------KP--TGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ----------------------------------------------CE--EEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred ----------------------------------------------CC--CeEEEecCCCcEEEEecCCCCccccceeee
Confidence 00 0144444 566666666554 3444555
Q ss_pred CCCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 870 SPPP------------ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 870 ~~~~------------~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|..+|.+++|+|+|++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 5544 799999999 899999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEECCCCc
Q 001190 938 QLCVWSIDTWE 948 (1128)
Q Consensus 938 ~i~iwd~~~~~ 948 (1128)
..+.|++...+
T Consensus 338 ~~~~~~~~~~~ 348 (368)
T 3mmy_A 338 WSKGHEFYNPQ 348 (368)
T ss_dssp STTCGGGCCTT
T ss_pred ccccccccCCC
Confidence 76666655443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=283.52 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=226.5
Q ss_pred cceEEEEEccCCCEEE-EEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-c
Q 001190 407 ISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 407 ~~V~~l~~spdg~~la-s~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| ++. +|++|+.||+|++|| .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876555 578899999999965432 233335779999999999999 888 899999999999999 6
Q ss_pred CC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee--cCCCCeEEEEEEcCCCCeE
Q 001190 483 SG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l 553 (1128)
++ +++..+.+|...|.+++|+++. ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 66 6678899999999999998742 269999999999999999998888888 7788999999999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEe-ccccCCceeEEEEeCCCCEEEEE---ECCCcEEEEECCCCee-eEEEecCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGG 628 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1128)
++++ .++.|++||+++++.+..+ .+|....+..+.|+|++.+|++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSC----RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEE----TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEe----cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 9998 4899999999999999998 77777558899999999999998 7999999999988765 333332 33
Q ss_pred CCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
...+.+++|+|++++|++++ .||.|++|++.++......+..+. +..++.+++|+|++..++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCG
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccce
Confidence 44789999999999997554 699999999998754343333322 346789999999988763
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-27 Score=270.56 Aligned_cols=268 Identities=10% Similarity=0.055 Sum_probs=219.8
Q ss_pred CcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEc
Q 001190 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSY 435 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~ 435 (1128)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35789999999999999999877642 4444 458999999999987 56678999999999
Q ss_pred cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEE-EE
Q 001190 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FS 513 (1128)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 513 (1128)
.+++.+.. +..|. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~~---~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIAT---VPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEEE---EECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEEE---EECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 99887653 43344 8999999999994 346777889999999 778877777754 4689999977 55666 78
Q ss_pred EeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE
Q 001190 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1128)
Q Consensus 514 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1128)
++.|+.|++||+.+++....+..+ ..+.+++|+|+|+.+++++. .++.|++||+.+++.+..+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 888999999999888777666654 45799999999998865443 47899999999998887776533 6788999
Q ss_pred eCCCCEEEEEE---CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE-EEEEcCCcEEEEEcccC
Q 001190 594 DTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIG 661 (1128)
Q Consensus 594 ~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~ 661 (1128)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 99999999988 68999999999999888887643 47899999999987 56678999999999887
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=310.34 Aligned_cols=251 Identities=15% Similarity=0.194 Sum_probs=210.6
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 419 (1128)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++... ....+.+|.+.|++++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~-----------------~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEE-----------------EEEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCc-----------------cceeccCCcCceEEEEecCCCCCC
Confidence 5999999999999999 6799999999999999843321 11237889999999999998 99
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCC--CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g--~~~~~~~~h~ 494 (1128)
+|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ +. ++++|+.||.|++|| .++ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 9999999999999999997522 22357789999999999999 88 899999999999999 555 3456778899
Q ss_pred CCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCC---CCeEEEe
Q 001190 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1128)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~---g~~l~~~ 556 (1128)
..|.+++|++.. ++.++++|+.||.|++||++.... ...+..|...|.+++|+|+ +.+++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 468999999999999999987743 3466778899999999999 8999998
Q ss_pred eeccCCCceEEEEeCCCCc-----eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+. ++.|++||+.+++ .......|.. .+.+++|+|+++++++++.||.|++|++.++.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 84 8999999999874 2223333444 78999999999999999999999999998643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=276.91 Aligned_cols=302 Identities=8% Similarity=0.063 Sum_probs=245.4
Q ss_pred cccCCC--CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDD--LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~--~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|.++. ........+.....+.+++|+|+++ ++++++.++.|++||+.+++.+.... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 555554 2335566666667788999999665 88888899999999999988764211 112568
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
|.+.|.+++|+|+|+++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999987665 46689999999999999994 446777899999999 78
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEe--------ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
++.+..+..+. .+.+++|++ +++++++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKIG-LPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCCS-EEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCCC-CceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 88877777654 589999976 667888887 4889999999877655444 33447889999999987766
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---------------CCcEEEEECCCCeee
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~ 620 (1128)
.+. .++.|++||+.+++.+..+.. . ..+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPV-F-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecC-C-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 589999999999998888763 2 36889999999999998876 579999999999998
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
..+... ..+.+++|+|++++|++++. |+.|++|+++
T Consensus 395 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888753 25899999999999998875 9999999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=272.50 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=214.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.|.+.|+|++|||||+ +||+|+.++ ++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999999 788887664 78999987765431 122258889999999888
Q ss_pred E-EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCCCCeE
Q 001190 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1128)
Q Consensus 422 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~~~v~ 498 (1128)
+ +++.|++|++||+.+++.+.. +. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~---~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSR---IK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEE---EE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEEE---EE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 567789999999999987663 43 67799999999774 33333 78999999 666 66666554 334
Q ss_pred EEeccCCCCccEEEE--EeccCcEEEEecCCCC----------------ceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s--~~~dg~i~~wd~~~~~----------------~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++++ .+++. |+.||.|++||+.... ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 445544 35555 6899999999998755 25678889999999999999999999984
Q ss_pred CCCce-EEEEeCCCCceeeEec-c-ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE--------------
Q 001190 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-------------- 623 (1128)
Q Consensus 561 ~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------- 623 (1128)
|+. |++||+.+++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+......
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 897 9999999999999998 5 554 8999999999999999999999999999765321110
Q ss_pred ------ec-CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 ------DA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ------~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 011123467899999999999999999999998765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=265.32 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=188.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+|...|.+++|||||++||+|+.++ ++|||+++++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 577999999999999999999998775 78999987654431 23335888999998884 446788899999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEe-ee
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~ 558 (1128)
.+++++..+. |...|.++++++ + .++++ .|+.|++||+... +....+.. ....+++++ .+++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8899988887 667899999865 3 34443 5889999999887 44444433 455566777 566664 32
Q ss_pred ccCCCceEEEEeCCCCc----------------eeeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeE
Q 001190 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~ 621 (1128)
.++.|++||+.+++ .+..+.+|.. .|.+++|+|++++|++|+.||+ |++||+.+++.+.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 58899999999876 2678888887 8999999999999999999998 9999999999998
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8873224458999999999999999999999999999765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=279.85 Aligned_cols=267 Identities=13% Similarity=0.245 Sum_probs=215.7
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
......+.|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~ 189 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSW 189 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEe
Confidence 345666789999999999998555899999999999999976311100 00000122347889999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC---C
Q 001190 415 SPDGN-YVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---R 485 (1128)
Q Consensus 415 spdg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g---~ 485 (1128)
+|++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +
T Consensus 190 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSS
T ss_pred CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCc
Confidence 99999 999999999999999988433 1223356789999999999994433 899999999999999 555 5
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCe-EEEeeeccCCC
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGD 563 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~~~~ 563 (1128)
.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++ .+
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~----~d 343 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG----TD 343 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE----TT
T ss_pred ceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe----CC
Confidence 778888999999999998743 24799999999999999988 4456678889999999999999975 66665 48
Q ss_pred ceEEEEeCCC--------------CceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 564 SFLVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 564 ~~i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
+.|++||+.. .+.+..+.+|.. .+..++|+|++. .+++++.||.|++|++...
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999987 356677777776 799999999998 8999999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=271.70 Aligned_cols=371 Identities=13% Similarity=0.155 Sum_probs=271.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE---EccCCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~ 419 (1128)
....|..+.|+|.....+..+......+++... ....+..++ |+|++.
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 445788899999755344443222223333221 233556666 677666
Q ss_pred EEEEE--------------eCCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 420 YVGVA--------------FTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 420 ~las~--------------~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.++.. +.++.+.||.+ .++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55543 23332345544 3342 2222234344 4567999999666 788899999999999 7
Q ss_pred CCCeEE-----EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 483 ~g~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+++.+. .+.+|.+.|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++.+++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788876 4568999999999965 668999999999999999999888888888888999999999999887665
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE--------CCCcEEEEECCCCeeeEEEecCCCC
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
. .++.|++||+.+++.+..+..+. .+..++|+|+++++++++ .||.|++||+.+++.+..+....
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-- 303 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-- 303 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--
Confidence 3 47899999999999888887653 588899999999999988 58999999999998877764322
Q ss_pred CCcceEEEcCCCCEE-EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCC
Q 001190 630 PNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (1128)
.+.+++|+|+++.+ ++++.++.|++||+.++.. ...+
T Consensus 304 -~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~---------------------------------------- 341 (433)
T 3bws_A 304 -NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSI---------------------------------------- 341 (433)
T ss_dssp -CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEE----------------------------------------
T ss_pred -CcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEe----------------------------------------
Confidence 57899999999755 5567899999999876521 1000
Q ss_pred CCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecccee
Q 001190 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1128)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 788 (1128)
.+...+.+++|+|+|+++++++.+..
T Consensus 342 -----------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~- 367 (433)
T 3bws_A 342 -----------------------------------------------------PVFDKPNTIALSPDGKYLYVSCRGPN- 367 (433)
T ss_dssp -----------------------------------------------------ECSSSEEEEEECTTSSEEEEEECCCC-
T ss_pred -----------------------------------------------------cCCCCCCeEEEcCCCCEEEEEecCCC-
Confidence 03345678888888887777665410
Q ss_pred EeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEE
Q 001190 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT 867 (1128)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 867 (1128)
. .+..++++++ ||.|++||+.+++.+..
T Consensus 368 -----------------------------------------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 368 -----------------------------------------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp -----------------------------------------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred -----------------------------------------c----------cccccccccccceEEEEEECCCCcEEEE
Confidence 0 0223444555 78999999999999988
Q ss_pred eeCCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEeccc
Q 001190 868 FMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (1128)
Q Consensus 868 ~~~~~~~v~~l~~s~~d~~~lasg~~-dg~v~iwd~~~ 904 (1128)
+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 397 ~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 WEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 876 45789999999 8888887764 99999999863
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=246.98 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=166.4
Q ss_pred CcccEEEEEEecC----cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 763 TSSKVVRLLYTNS----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 763 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
+...|+.++++|| ++.++.++.+ +++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 4456778888888 8888887644 555632
Q ss_pred eccCCCeEEEEe---CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEcC--CCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 839 LSKNDSYVMSAT---GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 839 ~s~dg~~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~--~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
++|+++.++. |+.|++|++ .+++.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+.+|++++++.
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 4566666653 788888888 55888888888999999988887 467999999999999999999999999998
Q ss_pred cccc---CeeEEEEcCCCCEE------------EEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 913 GHQK---RITGLAFSTSLNIL------------VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 913 ~h~~---~V~~l~~s~d~~~l------------~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
+|.. .+.+++|+|+|.++ ++|+.|++|++||..+++.+.........++. ..+ +..+.++.+
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~--lsg~~sg~~ 297 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRF--LEGDVKDHC 297 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCE--EEEEEETTE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-cee--EccccCCCE
Confidence 7543 67788999999876 66888999999999999876655443334443 222 333444778
Q ss_pred EEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 978 MLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 978 l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
+++++ |++|+|||+.+++.+..+..|. ...+.+++|||||++|++|+.|++|+|||+
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88876 9999999999999999887653 334456899999999999999999999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=272.54 Aligned_cols=311 Identities=14% Similarity=0.209 Sum_probs=235.0
Q ss_pred cCCCcEEEEEEeCCCC---------cEEEEeec----cCeEEEEEccCCceeccccccccccc--------ccCccccce
Q 001190 342 HQGSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMA--------ACSLPFQAS 400 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~---------~lla~gs~----d~~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 400 (1128)
.-.-+..++.|.|+.. ..+++|+. ...|.|.++.-..........-+|.. .....+...
T Consensus 43 ~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 122 (430)
T 2xyi_A 43 ALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 122 (430)
T ss_dssp ECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred CCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence 3445678999999752 35677765 35778876541100000000001000 001112233
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCC-------CcceeceeecccccceeEEEEecCCCeEEEEEec
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 46789999999999997 789999999999999999861 112233367899999999999999875 699999
Q ss_pred CCCeEEEEe-cCCCe-------EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC---CceeeecCCCCeE
Q 001190 473 DDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWC 541 (1128)
Q Consensus 473 ~d~~i~vWd-~~g~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~i 541 (1128)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.++++++.||.|++||++.. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 54321 4567789999999999874 3579999999999999999876 4556677888999
Q ss_pred EEEEEcCCCCe-EEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC-
Q 001190 542 TTMLYSADGSR-LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV- 617 (1128)
Q Consensus 542 ~~~~~s~~g~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~- 617 (1128)
++++|+|++.. +++++ .++.|++||+++ ++.+..+.+|.. .+.+++|+|+++ .|++++.||.|++||+...
T Consensus 281 ~~i~~~p~~~~~l~tg~----~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGS----ADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEE----TTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEe----CCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 99999999985 66666 489999999998 567888888876 899999999985 6889999999999999772
Q ss_pred -------------eeeEEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcEEEEEcccC
Q 001190 618 -------------NILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 618 -------------~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.+.... ++...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3444443 4455799999999999 9999999999999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-26 Score=260.86 Aligned_cols=327 Identities=10% Similarity=0.109 Sum_probs=253.4
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCceeeecCCCCeEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 544 (1128)
++++++.|+.|++|| .+++.+..+.+|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 88888888887754 89999977 55665 677799999999998887777766555 89999
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE-EEEECCCcEEEEECCCCeeeEEE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
+|+|+|+++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998877653 46899999999999988887654 57889999999988 57778999999999999988888
Q ss_pred ecCCCCCCcceEEEcCCCCEE-EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++.. ...
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~----------------------------------- 195 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDT----------------------------------- 195 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEE-----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEE-----------------------------------
Confidence 7543 46899999999887 5667789999999765410 000
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
T Consensus 196 -------------------------------------------------------------------------------- 195 (391)
T 1l0q_A 196 -------------------------------------------------------------------------------- 195 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe----CCeEEEEE
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT----GGKISLFN 858 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----dg~i~vwd 858 (1128)
. .+...+.+++|+|+|+++++++ ++.|++||
T Consensus 196 --------~-------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 196 --------V-------------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp --------E-------------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred --------E-------------------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 0 0223356677888887777664 57899999
Q ss_pred CCCceEEEEeeCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecccceeeecccccccCee---EEE------------
Q 001190 859 MMTFKVMTTFMSPPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT---GLA------------ 922 (1128)
Q Consensus 859 ~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~------------ 922 (1128)
+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 308 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSAD 308 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCC
T ss_pred CCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccc
Confidence 99999888888654 578999999 77766 6778999999999999999888876655421 122
Q ss_pred EcCCC----------CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 923 FSTSL----------NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 923 ~s~d~----------~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
|+.+. ..+...+.|..+++||+..|... . .......|+++|.+.+.
T Consensus 309 fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~-------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 309 FKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----K-------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----C-------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccceEEEEeCCCCceEEEEECCCCccc-----C-------cCCCeEEeCCCceEEEE
Confidence 22221 34666677899999999887531 0 12234679999998876
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=276.04 Aligned_cols=248 Identities=11% Similarity=0.103 Sum_probs=204.1
Q ss_pred CCCCeeEEEeccCCCeE-EEEe-CCeEEEEECC--CceEEEEee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYV-MSAT-GGKISLFNMM--TFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~--~~~~~~~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
|...|.+++|+|+|++| ++++ ||.|++||+. +++.+..+. .|...|.+++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 56689999999999996 7776 8999999999 888888876 5678899999999 99999999999999999999
Q ss_pred cceeee----cccccccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 904 VDEVKS----KLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 904 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+++... .+.+|.+.|++++|+|+ +++|++++.|+.|++||+.+++....+ ..+|. ..+.+++|+ ++.
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~h~-~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----LFGHK-HFVSSICCG-KDY 253 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----CCCCS-SCEEEEEEC-STT
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----ecCCC-CceEEEEEC-CCC
Confidence 887554 78899999999999999 999999999999999999987754332 22333 789999999 999
Q ss_pred EEEEEe-cCeEEEEecCCcccccccccCC----------------------CCCCCeEEEEEeeCCCEEEEEe-cCCcEE
Q 001190 977 RMLVVH-ETQLAIYDASKMERIRQWTPQD----------------------ALSAPISCAVYSCNSQLVFATF-CDGNIG 1032 (1128)
Q Consensus 977 ~l~~~~-d~~i~v~d~~~~~~~~~~~~~~----------------------~h~~~v~~l~~s~dg~~l~t~~-~dg~i~ 1032 (1128)
+|++++ |+.|++||+.+++.+..+..+. .....|.+++|+||+++|++++ .|+.|+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999976 9999999999998776654321 2256799999999999999998 899999
Q ss_pred EEec--CCC---ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC-------CCcEEEEcCCCCCCCcc
Q 001190 1033 VFDA--DTL---RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-------DGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1033 vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~-------dg~i~iWd~~~~~~~w~ 1099 (1128)
||++ .++ +.+..+. .+ ..+.+++|+| + .++++.+. +..|.+|.+....++|.
T Consensus 334 iw~~~~~~~~~l~~~~~~~------------~~-~~v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIIT------------FP-YNVISLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEECSSSTTCEEEEEEEE------------CS-SCEEEEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEeccCCCCceeeccEec------------cC-CceEEEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 9999 555 5555555 23 5679999999 3 45555443 55689998876655663
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=264.27 Aligned_cols=279 Identities=8% Similarity=0.058 Sum_probs=210.5
Q ss_pred EEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC
Q 001190 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1128)
Q Consensus 458 ~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 536 (1128)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456777 899999999999999 8898888876 466778888763 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEEC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~ 614 (1128)
.+.+|+..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 3677888888877777644344899999999 9999999999999999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1128)
++++.......+ +...+.+++|+|++.+|++|+.||.|++||+.++......+.
T Consensus 157 ~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~------------------------- 210 (343)
T 3lrv_A 157 EDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP------------------------- 210 (343)
T ss_dssp SSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------------
T ss_pred CCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------------
Confidence 999886655433 334699999999999999999999999999876521100000
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEec
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1128)
.
T Consensus 211 -------------------------------------------------------------------~------------ 211 (343)
T 3lrv_A 211 -------------------------------------------------------------------V------------ 211 (343)
T ss_dssp -------------------------------------------------------------------C------------
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeE
Q 001190 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (1128)
Q Consensus 775 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i 854 (1128)
.|...|.+++|+|+|.+|++++++.|
T Consensus 212 ------------------------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v 237 (343)
T 3lrv_A 212 ------------------------------------------------------DEEAKIKEVKFADNGYWMVVECDQTV 237 (343)
T ss_dssp ------------------------------------------------------CTTSCEEEEEECTTSSEEEEEESSBE
T ss_pred ------------------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeE
Confidence 15566777777777777777776677
Q ss_pred EEEECCCceEEEEeeC---CCCCe--eEEEEcCCCCCEEEEEeC-CCcEEEEecccceeeecccccccCeeEEEEcC---
Q 001190 855 SLFNMMTFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST--- 925 (1128)
Q Consensus 855 ~vwd~~~~~~~~~~~~---~~~~v--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~--- 925 (1128)
++||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTA 312 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----C
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccc
Confidence 7777776655444332 33333 4699999 9999999998 999999999765433222 6678889998
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 001190 926 SLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 926 d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
+.+.+++++.|+.+.++-...
T Consensus 313 ~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCCEEEEEEETTEEEEEEECS
T ss_pred ccceeEEEecCCceEEEEecC
Confidence 888999999999999886544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=268.01 Aligned_cols=268 Identities=8% Similarity=0.062 Sum_probs=213.3
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
..+.+|++ ++++|+.||+|+|||+.+++.+.. +. ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCe
Confidence 34456776 789999999999999999887643 11 457888889998 999999999
Q ss_pred EEEEEcc---------CCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-cCCCeEEEec-CCCCC
Q 001190 430 IQLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAP 496 (1128)
Q Consensus 430 i~vwd~~---------~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~-~h~~~ 496 (1128)
|++|+.. +++.++.. ..+|.+.|.+++|+| +++ ++++|+.|++|++|| .+++.+.... .|...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLREI--EVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEE--ECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEEe--ecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999765 43333321 226778999999999 999 899999999999999 8888876664 45568
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-eeecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|.+++|++ ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCC
Confidence 99999977 6789999999999999999998877 67777 889999999999999999987 348999999998
Q ss_pred ceeeEeccccC--Cce--eEEEEeCCCCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC---CCCEEEE
Q 001190 575 TIKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAV 646 (1128)
Q Consensus 575 ~~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~ 646 (1128)
+.+..+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ +...+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 87666554211 123 36999999999999998 999999999765443333 2467888888 8899999
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
++.||.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999987543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=297.84 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985432 233368899999999999988 88 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcC-----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (1128)
+|| .+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888999999999999886447899999999999999998773 3446677888999999999
Q ss_pred --------CCCeEEEeeeccCCCceEEEEeCCCC----ceeeEeccccCCceeEEEEeCC---CCEEEEEECCCcEEEEE
Q 001190 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 549 --------~g~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd 613 (1128)
++..+++++ .++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGG----ADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEE----TTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEE----CCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999988 4899999999877 55667778876 8999999999 89999999999999999
Q ss_pred CCCCeee---EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++... .......+...|.+++|+|+++++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222345568999999999999999999999999998864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=271.47 Aligned_cols=303 Identities=12% Similarity=0.092 Sum_probs=199.2
Q ss_pred CcEEEEEE---eCCCCcEEEEeeccCeEEEEEccCCceecc-----cccccccccccC-----ccccceeccCCCcceEE
Q 001190 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1128)
Q Consensus 345 ~~V~~v~f---spdg~~lla~gs~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~ 411 (1128)
....++.| +|++..++++| .++.|.+|+......... ..+..+...... ..........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 34555555 45555566665 578899998643322110 001111110000 00111223445566666
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcce--eceeecccccceeEEEEec--------CCCeEEEEEecCCCeEEEEe
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~fs~--------d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+++++.+||+|+.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6777888999999999999999999986543 2335789999999999998 788 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------------------------c
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------------------------~ 535 (1128)
.++.++..+.+|..+|.+++|+|. +..+|++++.||+|++||+.++...... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 788888888899999999999874 2358999999999999999876543321 2
Q ss_pred CCCCeEEEEEEc-CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCcee------------------EEEEeC-
Q 001190 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG------------------VVQFDT- 595 (1128)
Q Consensus 536 ~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~------------------~~~~~~- 595 (1128)
.+...+.++.|+ +||+.+++++ .++.+++||+.+++....+..+.. .+. ...+++
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s----~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMC----KSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEEC----TTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEe----CCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 344567788876 7999999987 489999999998876666554432 111 122333
Q ss_pred -CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 596 -~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++.++++|+.||.|++||..+++.......+. .+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 23356667789999999999998877766544 3899999999999999998765 5566553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=240.21 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=194.3
Q ss_pred EEEEEEe-CCCCcEEEEeeccCeEEEEEccCC---ceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 347 VISMDFH-PSHQTLLLVGSSNGEITLWELAMR---DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 347 V~~v~fs-pdg~~lla~gs~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|.++-|- ++.+.+.++......|++|+..++ +.++ .+++|+.+|..++|+||-.-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLY-------------------TWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEE-------------------EEECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeE-------------------EEeccCceeEEEEEcCccccee
Confidence 5555553 444444444445789999999988 4443 3667777777777777544333
Q ss_pred EEe--CCCeEEEEEcc--CC-CcceeceeecccccceeEEEEecCCCeEEEEEec--CCCeEEEEe--cCCCeEEEecCC
Q 001190 423 VAF--TKHLIQLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGH 493 (1128)
Q Consensus 423 s~~--~d~~i~vwd~~--~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd--~~g~~~~~~~~h 493 (1128)
... .=..-.|+-+. .. +.+.+...-.+|...|..+ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 221 11111111111 00 0111111123444445444 4555 455533 588999999 558888888899
Q ss_pred CCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCCCCeEEEeee--------ccC
Q 001190 494 EAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKD 561 (1128)
Q Consensus 494 ~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~g~~l~~~~~--------~~~ 561 (1128)
...+..++|++ .+++.+|++++.|++|++||+.+++...++..+.. .+.+++|+|+|.++++++. .+.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999988 56789999999999999999999998888876543 6778899999998865331 123
Q ss_pred CCceEEEEeCCCCceeeEe-----ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc-ceE
Q 001190 562 GDSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL-PRL 635 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v 635 (1128)
.|++|++||..+++.+..+ .+|.. .+ +..+.++..+++++.|++|+|||+.+++.+.++..+.. .+ .++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~--~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD--QHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC----CCCCEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC--CeEEEE
Confidence 5899999999999987765 35544 22 33344478999999999999999999999999875433 34 468
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEc
Q 001190 636 RFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
+|+|||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-25 Score=261.56 Aligned_cols=332 Identities=13% Similarity=0.084 Sum_probs=253.2
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC--CCCceeeEeccc
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGF 583 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~ 583 (1128)
+++.++++++.|++|.+||..+++....+..... +..++|+|||+++++++. ++.|.+||+ .+++.+.++...
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECC
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEecC
Confidence 3668899999999999999999888877774433 889999999999999884 699999999 889888888753
Q ss_pred cCCceeEEEEeC----CCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCC---------CCCcceEEEcCCCCEE-EEEE
Q 001190 584 RKKSNGVVQFDT----TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLL-AVTT 648 (1128)
Q Consensus 584 ~~~~v~~~~~~~----~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~~~~l-~~~~ 648 (1128)
. ....++|+| +|+++++++ .++.|.+||..+++++..+...+. ...+..+.++|++..+ ++..
T Consensus 222 ~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 222 I--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 3 578899999 999999988 589999999999999888865321 1246677788765544 4444
Q ss_pred cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCC
Q 001190 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1128)
.++.|.+||..+.....
T Consensus 300 ~~g~i~vvd~~~~~~l~--------------------------------------------------------------- 316 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLT--------------------------------------------------------------- 316 (543)
T ss_dssp TTTEEEEEECTTSSSCE---------------------------------------------------------------
T ss_pred CCCeEEEEEecCCCcce---------------------------------------------------------------
Confidence 56777777764431000
Q ss_pred cccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeee
Q 001190 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1128)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (1128)
+.
T Consensus 317 -------------------------------------------------------------~~----------------- 318 (543)
T 1nir_A 317 -------------------------------------------------------------VT----------------- 318 (543)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------eE-----------------
Confidence 00
Q ss_pred ccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC----CCCCeeEEEEcC
Q 001190 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPPASTFLAFHP 882 (1128)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~ 882 (1128)
. + .+...+..++|+|||+++++++ +++|.+||+.+++++..+.. |.+....+ ++|
T Consensus 319 -----~----------i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 319 -----S----------I---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp -----E----------E---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred -----E----------e---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0 0 0223355688999999877664 78999999999999888874 55444443 577
Q ss_pred CCCCEEEEEe-CCCcEEEEeccc-------ceeeecccccccCeeEEEEcCCCCEEEEEc-------CCCcEEEEECCCC
Q 001190 883 QDNNIIAIGT-EDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSG-------ADAQLCVWSIDTW 947 (1128)
Q Consensus 883 ~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~-------~Dg~i~iwd~~~~ 947 (1128)
+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4577888876 689999999998 899999999999999999999999999987 2679999999987
Q ss_pred ccc-ceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 948 EKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~-~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
+.. ..++ +..+.....+...+..+.|++||++|+++.
T Consensus 460 ~~~~~~~~------------------------------------------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 460 DAKYQVLP------------------------------------------IAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp TSCCEEEC------------------------------------------HHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred CCCeEEee------------------------------------------chhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 643 1111 111111112267889999999999999763
Q ss_pred -----cCCcEEEEecCCCceEEEeC
Q 001190 1027 -----CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1027 -----~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|+.|.|||.+|++++..+.
T Consensus 498 ~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ecCCCCCCeEEEEECCCceEEEeec
Confidence 37999999999999999888
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=265.48 Aligned_cols=250 Identities=6% Similarity=-0.071 Sum_probs=176.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc----
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---- 416 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---- 416 (1128)
..|...+....++++++ +||+|+.|++|+|||..+++...... ...+.||.+.|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSA 150 (393)
T ss_dssp C----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECT
T ss_pred cccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEcccccc
Confidence 34555566666677776 88999999999999999887643211 123889999999999998
Q ss_pred ----CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE--
Q 001190 417 ----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-- 489 (1128)
Q Consensus 417 ----dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-- 489 (1128)
||++||+|+.|++|+|||+.++.++. .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC------
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccc
Confidence 89999999999999999999877655 46689999999999999865 799999999999999 66654322
Q ss_pred -----------------------ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE-
Q 001190 490 -----------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML- 545 (1128)
Q Consensus 490 -----------------------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~- 545 (1128)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 246778888888863 4778999999999999999987665555544443333332
Q ss_pred -----------------EcC-CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC
Q 001190 546 -----------------YSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 546 -----------------~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 607 (1128)
++| .+..+++++. .|+.|++||+.+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 222 2334444332 589999999999999888888876 899999999999999998766
Q ss_pred cEEEEECC
Q 001190 608 QIKFWDMD 615 (1128)
Q Consensus 608 ~i~iwd~~ 615 (1128)
+.+|.+.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 5566553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-25 Score=257.32 Aligned_cols=326 Identities=14% Similarity=0.113 Sum_probs=250.4
Q ss_pred EecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEec--CCCCceeeec
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYD 535 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~--~~~~~~~~~~ 535 (1128)
|+|++. ++++++.|++|.+|| .+++++..+..+.. +..++|++ +|++|++++.|+.|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788887 889999999999999 89999999884333 88899976 7789999999999999999 6666666665
Q ss_pred CCCCeEEEEEEcC----CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc----------cCCceeEEEEeCCCCEEE
Q 001190 536 APGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 536 ~~~~~i~~~~~s~----~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~ 601 (1128)
.+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.+++++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998874 3789999999999999888752 233578899999876654
Q ss_pred -EEECCCcEEEEECCCCeeeE--EEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCcccccc
Q 001190 602 -AVGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALR 677 (1128)
Q Consensus 602 -~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1128)
+...++.|.+||..+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..+++ +...+...
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-l~~~i~~g------ 365 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVG------ 365 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECS------
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-EEEeeccC------
Confidence 45688999999998876544 3332 23578899999999877665 58899999987762 11110000
Q ss_pred CcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEe
Q 001190 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1128)
Q Consensus 678 ~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (1128)
.
T Consensus 366 ------------~------------------------------------------------------------------- 366 (543)
T 1nir_A 366 ------------K------------------------------------------------------------------- 366 (543)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------C-------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
. .|......+
T Consensus 367 ---~-------------------------------------------------------------------ph~g~g~~~ 376 (543)
T 1nir_A 367 ---T-------------------------------------------------------------------PHPGRGANF 376 (543)
T ss_dssp ---S-------------------------------------------------------------------BCCTTCEEE
T ss_pred ---C-------------------------------------------------------------------CCCCCCccc
Confidence 0 022222222
Q ss_pred EeccC-CCeEEEEe--CCeEEEEECCC-------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEE
Q 001190 838 ALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-------EDSTIHIY 900 (1128)
Q Consensus 838 ~~s~d-g~~la~~~--dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~-------~dg~v~iw 900 (1128)
++|+ |.+++++. +++|.+||+.+ +++++++.+|...+..++++| ++++|++++ .+++|.+|
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 3555 55556653 57888888887 899999999998999999999 999999987 27799999
Q ss_pred ecccceee-ecc--------cccccCeeEEEEcCCCCEEEEE-----cCCCcEEEEECCCCcccceeE
Q 001190 901 NVRVDEVK-SKL--------KGHQKRITGLAFSTSLNILVSS-----GADAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 901 d~~~~~~~-~~l--------~~h~~~V~~l~~s~d~~~l~s~-----~~Dg~i~iwd~~~~~~~~~~~ 954 (1128)
|+.+++.. ..+ ..|...+..++|+|||++|+++ +.|+.|.|||.++++++..+.
T Consensus 455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99998766 332 4567889999999999988865 247999999999998765443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=247.06 Aligned_cols=305 Identities=9% Similarity=0.020 Sum_probs=233.6
Q ss_pred CcEEEEEEeCCCCcEEEEee----ccC----eEEEEEc--cCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs----~d~----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
..|...+|++.|..++++|+ .|| +|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 46888899999988888887 357 8999999 88886632 226678888888877
Q ss_pred cc--------------CCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 415 sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 75 26677776654 799999998643 33 4778999999999999999 78888877
Q ss_pred C---eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEE-EEeccCc--EEEEecCCCCceeeecCCCCeEEEEEEc
Q 001190 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1128)
Q Consensus 475 ~---~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s 547 (1128)
+ .|++|| .+++. ..+..|.+.+.+++|+| ||+.|+ +++.++. |++||+.++.. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46777888999999977 667676 6666655 99999987654 5566677789999999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEe
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~ 624 (1128)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998773 223448999999888743 3444433 67789999999999998764 689999999987743 33
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEEcCC---cEEEEEcccCccccccccCCccccccCcceeeeeecccc
Q 001190 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+ ..+.+.. +.+.+.+++|+|.-.
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~-----~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPA-----TDGQVKFPAWSPYLH 410 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCC-----SSSEEEEEEECCCCC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeC-----CCCCCcCCccccccc
Confidence 22 2 689999999999999988877 7999998754 2333433 345688899998643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=259.24 Aligned_cols=303 Identities=12% Similarity=0.059 Sum_probs=211.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeec-cC-----eEEEEEccCCceecccccccccc-----cccCccccceeccCCCcceEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDM-----AACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~-d~-----~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
...|.+++|||||+ +|++++. |+ .|.+||+.+++............ ...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 44699999999999 5677776 88 99999999987643211000000 0000000000000001458899
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
+|||||++|++++. +.|.+||+.++. .+. .+..|...+.+++|+|||+ +|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 232 3667888999999999999 677776 56999999 56655544
Q ss_pred ecCCCCC----------------eEEEeccCCCCccEEEEEeccC---------------------------------cE
Q 001190 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1128)
Q Consensus 490 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (1128)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 36788866 778899988776 78
Q ss_pred EEEecCC-CCceeeec--CCCCeEEEEEEcCCCCeEEEeeec-cCCCceEEEEeCCCCceeeEeccccCC---ceeEEEE
Q 001190 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1128)
Q Consensus 521 ~~wd~~~-~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~ 593 (1128)
.+||+++ ++...... .+...+..++| |||++|++...+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 35568999999 999999977642 234678999999999988777665532 3457899
Q ss_pred eCCCCEEEEEECCCcEEEEECC-CCeeeEEEecCCCCCCcceE-EEcCCCCEEEEEEc-CC--cEEEEEccc
Q 001190 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAI 660 (1128)
Q Consensus 594 ~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~-dg--~i~iw~~~~ 660 (1128)
+|||+.+++++.||.+.+|.+. ++. ...+..+ ...+..+ .|+|+++.|+..+. ++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899987887765 344 4444432 3356676 59999998765554 44 889998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-23 Score=254.91 Aligned_cols=244 Identities=9% Similarity=0.032 Sum_probs=173.9
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC----------------eeEEEEcCCCCCEEEEEeC
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA----------------STFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------v~~l~~s~~d~~~lasg~~ 893 (1128)
+...+..++|||||++|++++++.|++||+.+++.......+... +.+++||| ||++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 455678888999999888888888999999888776554443332 47899999 8999998877
Q ss_pred CC---------------------------------cEEEEeccc-ceeeeccc--ccccCeeEEEEcCCCCEEEEEcC--
Q 001190 894 DS---------------------------------TIHIYNVRV-DEVKSKLK--GHQKRITGLAFSTSLNILVSSGA-- 935 (1128)
Q Consensus 894 dg---------------------------------~v~iwd~~~-~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~~~-- 935 (1128)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 889999988 87654433 47788999999 99999997654
Q ss_pred ---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC-CcccccccccCCCCCCCe
Q 001190 936 ---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS-KMERIRQWTPQDALSAPI 1010 (1128)
Q Consensus 936 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~-~~~~~~~~~~~~~h~~~v 1010 (1128)
+..|++||+.+++......... .. ....+..++|+|||++++++. ++.++||.+. +++ ...+..+ ...+
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~-~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PT-WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SS-CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCE
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CC-cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEE
Confidence 5679999999987655443321 10 001456789999999777765 6767777765 344 4544443 6678
Q ss_pred EEE-EEeeCCCEEEE-EecCC--cEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC--
Q 001190 1011 SCA-VYSCNSQLVFA-TFCDG--NIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-- 1083 (1128)
Q Consensus 1011 ~~l-~~s~dg~~l~t-~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-- 1083 (1128)
..+ .|+|||++|+. ++.++ .++||++.. +.....+. . ...+..++|+| |++.|+....+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~------------~-~~~~~~~~~sp-dg~~l~~~~~~~~ 447 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS------------K-APGMHSASFAR-NASVYVDSWSNNS 447 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC------------C-SCSEEEEEECT-TSSEEEEEEEETT
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc------------c-CCCceEEEECC-CCCEEEEEecCCC
Confidence 787 59999997765 55555 899999874 54444444 1 22346899999 57776655443
Q ss_pred --CcEEEEcCCCCC
Q 001190 1084 --GSVKVMEPSESE 1095 (1128)
Q Consensus 1084 --g~i~iWd~~~~~ 1095 (1128)
+.+.+|+...++
T Consensus 448 ~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 448 TPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEEETTSCE
T ss_pred CCCeEEEEEcCCCe
Confidence 468899876543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=260.80 Aligned_cols=321 Identities=10% Similarity=0.089 Sum_probs=229.3
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc---ceEEEEEccCCCEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 422 (1128)
.+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 467899999999 6666 689999999999987643 2444554 499999999999999
Q ss_pred EEeCC---------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC
Q 001190 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1128)
Q Consensus 423 s~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~ 492 (1128)
+++.+ +.|.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+|+.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999999875 33323445666799999999999 5777764 8999999 67776665555
Q ss_pred CCCCe------------------EEEeccCCCCccEEEEEeccC----------------------------------cE
Q 001190 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1128)
Q Consensus 493 h~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (1128)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 7888876 778898887653 79
Q ss_pred EEEecCCCCceeeecCC------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCce----eE
Q 001190 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 590 (1128)
++||+.++.....+..+ ...+..++|||||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887754555543 557899999999998877654333467899999999988776655433233 36
Q ss_pred EEEeCCCCEEEEE--ECCC------cEEEEE-CCCCee--eEEEecCCCCCCcce-EEEcCCCCEEEEEEcC---CcEEE
Q 001190 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1128)
Q Consensus 591 ~~~~~~~~~l~~~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~sp~~~~l~~~~~d---g~i~i 655 (1128)
++|+|||+.|+.. ..++ .|++|| ..+++. ...+.. ++ ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-GD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC-SS-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec-CC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977764 4666 577788 445441 333321 11 23443 6899999999877665 78999
Q ss_pred EEcccCcc-ccccccCCccccccCcceeeeeecccccccccCC
Q 001190 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1128)
Q Consensus 656 w~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1128)
|++..... ....+... ..+...+..++|+|||+.++....
T Consensus 389 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceeccc--ccCCCCeEEEEECCCCCEEEEEcc
Confidence 99875421 12222210 002334678999999998876543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=231.64 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=209.0
Q ss_pred cccC--CCCCcceEEee-cCCCcEEEEEEeC--------------CCCcEEEEeec--c---CeEEEEEccCCceecccc
Q 001190 327 TWSL--DDLPRTVAVSL-HQGSTVISMDFHP--------------SHQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1128)
Q Consensus 327 ~~~~--~~~~~~~~~~~-~h~~~V~~v~fsp--------------dg~~lla~gs~--d---~~i~iwd~~~~~~~~~~~ 384 (1128)
+|++ ..........+ +|...+..+++++ .+.++++++.. + +.|++||+..+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 7877 44332222333 4888899888886 14435444432 2 7999999975432 1
Q ss_pred cccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC---eEEEEEccCCCcceeceeecccccceeEEEEec
Q 001190 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1128)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~ 461 (1128)
.+.+|...|.+++|||||++||+++.++ .|++||+.+++... +..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcC
Confidence 2677899999999999999999999875 99999999987543 667888999999999
Q ss_pred CCCeEEEE-EecCCCe--EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeee
Q 001190 462 PNKLLCVV-TCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDY 534 (1128)
Q Consensus 462 d~~~~~l~-s~s~d~~--i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~ 534 (1128)
||+. |+ +++.|+. |++|| .+++ ...+..|...+.+++|+| ||++|++++. ++ .|.+||+.++.. ..+
T Consensus 233 dg~~--la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l 306 (415)
T 2hqs_A 233 DGSK--LAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI 306 (415)
T ss_dssp TSSE--EEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred CCCE--EEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence 9994 55 7766654 99999 5554 577888999999999977 6788888776 45 577778776543 344
Q ss_pred cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEE
Q 001190 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKF 611 (1128)
Q Consensus 535 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~i 611 (1128)
..+...+.+++|+|||++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|++|++++.++ .|++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 5566789999999999999988752 23578999999998874 444443 688899999999999988776 7999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
||+.++ ....+.. +...|.+++|+|..
T Consensus 383 ~d~~g~-~~~~l~~--~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTDGR-FKARLPA--TDGQVKFPAWSPYL 409 (415)
T ss_dssp EETTSC-CEEECCC--SSSEEEEEEECCCC
T ss_pred EECCCC-cEEEeeC--CCCCCcCCcccccc
Confidence 998754 4455543 34479999999964
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-21 Score=217.74 Aligned_cols=279 Identities=10% Similarity=0.044 Sum_probs=205.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC-CC
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 428 (1128)
+.|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999887642 23345556 9999999997777765 88
Q ss_pred eEEEEEccCCCc-ceeceeecccccceeEEEEecCCCeEEEEEecCCC---eEEEEe-cCCCeEEEecCCCCCeEEEecc
Q 001190 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~---~i~vWd-~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 3555666666699999999 566555553 999999 778877777654 446899997
Q ss_pred CCCCccEEEE-EeccCc-EEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce-
Q 001190 504 HKENIQFIFS-TAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1128)
Q Consensus 504 ~~~~~~~l~s-~~~dg~-i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~- 576 (1128)
+ +|+++++ ...++. |.+|+++..+... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 5554544 455588 9999998655432 22234456899999999997776653 478999999999988
Q ss_pred --eeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee--eEEEecC--CCCCC---cceEEEcCCCCEEEE
Q 001190 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLPN---LPRLRFSKEGNLLAV 646 (1128)
Q Consensus 577 --~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~v~~sp~~~~l~~ 646 (1128)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... ..... ...++|+||+++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7777654 2567899999999887765 578899999999887 4433322 11112 245899999999877
Q ss_pred EEc-CCcEEEEEcccC
Q 001190 647 TTA-DNGFKILANAIG 661 (1128)
Q Consensus 647 ~~~-dg~i~iw~~~~~ 661 (1128)
++. ++.|.+|++...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999998764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=248.45 Aligned_cols=385 Identities=11% Similarity=0.074 Sum_probs=253.7
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCCCCEEEEEECC---------Cc
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGED---------SQ 608 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~d---------g~ 608 (1128)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3779999999999988888766531 38899999999999999864 78
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
+++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++.. .+....+...
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~-------------- 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEG-------------- 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTT--------------
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCC--------------
Confidence 89999999876322222233334789999999999999986 7999999877632 1111100000
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
.+ ..+ +.-|... ..-.+.+.
T Consensus 157 --~~-------------------------------------~~g-----~~~~v~~----------------ee~~~~~~ 176 (723)
T 1xfd_A 157 --VI-------------------------------------YNG-----LSDWLYE----------------EEILKTHI 176 (723)
T ss_dssp --TE-------------------------------------EEE-----ECCHHHH----------------HTTSSSSE
T ss_pred --ce-------------------------------------ECc-----ccceeEE----------------EEeccCcc
Confidence 00 000 0000000 00122457
Q ss_pred EEEEecCcceEEEeecc-ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 769 RLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
+++|+|||+.|++++.+ +.+.+|++.... + .+...+..+.|+++|..
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~~~~~~~~~~~~~G~~-- 224 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SIYPTVKPYHYPKAGSE-- 224 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SSSCCCEEEECCBTTSC--
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cCCCcceeccCCCCCCC--
Confidence 89999999999988765 567777653210 0 02234778899888863
Q ss_pred EEeCCeEEEEECCCceEEEEeeCC------CCCeeEEEEcCCCCCEEEEEeC----CCcEEEEecccceeeeccccc-cc
Q 001190 848 SATGGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDEVKSKLKGH-QK 916 (1128)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~ 916 (1128)
..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++||+.+++....+..+ .+
T Consensus 225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 302 (723)
T 1xfd_A 225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA 302 (723)
T ss_dssp -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC
Confidence 12457999999998876666654 55789999999 8988877653 357999999999877665543 33
Q ss_pred Ce----eEEEEcCCCCEEEE--EcCCC------cEEEEE-CCCCcc--cceeEEeecCCCCCCCccE-EEEcCCCCEEEE
Q 001190 917 RI----TGLAFSTSLNILVS--SGADA------QLCVWS-IDTWEK--RKSVTIHIPAGKTPTGDTR-VQFNADQVRMLV 980 (1128)
Q Consensus 917 ~V----~~l~~s~d~~~l~s--~~~Dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~v~~-v~~s~d~~~l~~ 980 (1128)
.+ ..++|+|||++|+. ...|+ .|.+|| ..+++. ...+. .++ ..+.. ++|+|||++|+.
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~--~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT----SGD--WDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC----CSS--SCEEEEEEEETTTTEEEE
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee----cCC--eEEEeeeEEcCCCCEEEE
Confidence 33 37899999997775 44666 466777 344431 21111 111 22333 689999999976
Q ss_pred Ee-c---CeEEEEecCCcc--cccccccCCCCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEecCCCceEEEe
Q 001190 981 VH-E---TQLAIYDASKME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-G--NIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 981 ~~-d---~~i~v~d~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-g--~i~vwd~~~~~~~~~~ 1045 (1128)
.. + +.+++|++.... ....+.....|...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 53 3 789999987543 233333211135678899999999988875432 2 3455676666655444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-21 Score=214.55 Aligned_cols=277 Identities=10% Similarity=0.090 Sum_probs=214.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeec------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3455679999999999955444433 67999999999886642 11 2335778999
Q ss_pred ccCCCEEEEE-eCCCeEEEEEccCCCcceeceeeccccc---------ceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 415 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+.+++...+.++.|.+|| .+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966655 4579999999999887653 333322 27889999999953222224689999999 88
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC----CCCeEEEEEEcCCCCeEEEeeec
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
++.+..+..+...+.+++|++ +++++++++.++.|.+||+.+++....+.. +...+..++|+|+|++++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~- 250 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS- 250 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-
T ss_pred CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-
Confidence 888888876666688888866 668899999999999999988877666554 3456888999999998877763
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+
T Consensus 251 --~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 322 (353)
T 3vgz_A 251 --KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALS 322 (353)
T ss_dssp --SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEEC
T ss_pred --CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEc
Confidence 46899999999999888877543 24589999999777766 68999999999999988887543 47899999
Q ss_pred CCCCEEEEEEcCC
Q 001190 639 KEGNLLAVTTADN 651 (1128)
Q Consensus 639 p~~~~l~~~~~dg 651 (1128)
|+|++|+++..++
T Consensus 323 ~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 323 ADGKTLYVSVKQK 335 (353)
T ss_dssp TTSCEEEEEEECC
T ss_pred CCCCEEEEEEccc
Confidence 9999888777654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=239.37 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=165.9
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc-eeceeecccc-----------------cceeEEEEecCCCeEEEE
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVV 469 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~fs~d~~~~~l~ 469 (1128)
.+..+.|+ |..+++++.++ | +||+.+|+.+ +. +..|. ..|.+++|+|| +. +++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVL 97 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEE
Confidence 35557888 66777787888 8 9999999863 32 22332 56999999999 52 344
Q ss_pred EecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-----CCceeeecCCCCe----
Q 001190 470 TCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW---- 540 (1128)
Q Consensus 470 s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 540 (1128)
+ . ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++|++.+ ++...........
T Consensus 98 ~-~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-T-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-E-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-E-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 4 3 5999999944444455666777888899977 67788884 789999999987 5554433333222
Q ss_pred ----------EEEEEEcCCCCeEEEeeecc-----------------------------CCCceEEEEeCCCCceeeEec
Q 001190 541 ----------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 541 ----------i~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
+.++.|||||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999988655443
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEECCC-----cEEEEECCCC-eeeEEEecC--CCCCCcceEEEcC--CCCEEEEEEcC
Q 001190 582 G-FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNV-NILTSTDAE--GGLPNLPRLRFSK--EGNLLAVTTAD 650 (1128)
Q Consensus 582 ~-~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~-~~~~~~~~~--~~~~~v~~v~~sp--~~~~l~~~~~d 650 (1128)
. .....+..++|+|||++|++++.++ .|++||+.++ ......... .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688899999999999988765 8999999998 433332211 1111346789999 99999888888
Q ss_pred CcEEEEEcc
Q 001190 651 NGFKILANA 659 (1128)
Q Consensus 651 g~i~iw~~~ 659 (1128)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=240.69 Aligned_cols=321 Identities=12% Similarity=0.095 Sum_probs=220.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-EEecCCC-----------------CCeEEEeccCCCCccEEEEE
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFEGHE-----------------APVYSICPHHKENIQFIFST 514 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 514 (1128)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..|. ..|.+++|+++ + .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence 5668888 55 456666677 8 999 778763 4443332 46999999874 3 44444
Q ss_pred eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-----CceeeEeccccCCc--
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-----GTIKRTYAGFRKKS-- 587 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~~-- 587 (1128)
.++.|++||+.++... .+..+...+.+++|||||++|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999776443 3444556788899999999999864 78999999998 77665444433311
Q ss_pred -----------eeEEEEeCCCCEEEEEE---------------------------------CCCcEEEEECCCCeeeEEE
Q 001190 588 -----------NGVVQFDTTQNHFLAVG---------------------------------EDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 588 -----------v~~~~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (1128)
+..++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987 4578999999998865544
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCC-----cEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADN-----GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
....+...+..++|+|||+.|++++.++ .|++||+.++... ..
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eE-------------------------------
Confidence 3333444688999999999999987765 7888876554100 00
Q ss_pred CcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce
Q 001190 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1128)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 778 (1128)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc--CCCeEEEEe-CCeEE
Q 001190 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKIS 855 (1128)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~la~~~-dg~i~ 855 (1128)
+...... .....+.+++|+| ||+++++++ ++.++
T Consensus 300 ~~~~~~~-------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 300 LFVETDK-------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEECS-------------------------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EEEccCC-------------------------------------------CeECccCCceeecCCCCEEEEEEccCCccE
Confidence 0000000 0011234567888 888777776 67777
Q ss_pred EEECC-CceEEEEeeCCCCCeeE-EEEcCCCCCEEEE-EeCCC----cEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 856 LFNMM-TFKVMTTFMSPPPASTF-LAFHPQDNNIIAI-GTEDS----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 856 vwd~~-~~~~~~~~~~~~~~v~~-l~~s~~d~~~las-g~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|++. +++.+..+..+...+.. ++|+| +++.|+. +..++ .|+.||+.+++ ...+. |...+.+++|+|||+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence 77765 56667777777777876 89999 7766654 44444 67777777765 33444 677899999999999
Q ss_pred EEEEEcCC----CcEEEEECCCCc
Q 001190 929 ILVSSGAD----AQLCVWSIDTWE 948 (1128)
Q Consensus 929 ~l~s~~~D----g~i~iwd~~~~~ 948 (1128)
+++..+.+ +.|.+||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 88876443 569999998876
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=211.71 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=192.8
Q ss_pred EeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccC-CCc
Q 001190 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1128)
Q Consensus 362 ~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~-~~~ 440 (1128)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998877542 455888999999999999999987 78999999999 775
Q ss_pred ceeceeeccc-ccceeEEEEecCCCeEEEEEec--CCCeEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEE-EE
Q 001190 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1128)
Q Consensus 441 ~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 514 (1128)
... ..+| ...|.+++|+|||+ +|++++ .++.+.||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~~---~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EKV---DTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EEC---CCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eEe---ccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 542 3344 47899999999999 677776 344555555 4444455555444 488889976 556666 78
Q ss_pred eccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEE
Q 001190 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~ 592 (1128)
+.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 334455566678999999999998887763 35667778775 4555566666554 688899
Q ss_pred EeCCCCEEEEEECC-----------CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 593 ~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
|+|++++|++++.+ +.|++||+.+++........++...+.+++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999998765 569999999887654443223344789999999999999887653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-20 Score=206.73 Aligned_cols=273 Identities=14% Similarity=0.161 Sum_probs=192.2
Q ss_pred CcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC-CeEEEEE
Q 001190 357 QTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLYS 434 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~vwd 434 (1128)
++++++++.|+.|.+||+.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 44666668899999999963 322110 123467789999999999999999886 9999999
Q ss_pred cc--CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecCCCCCeEEEeccCCCCc
Q 001190 435 YA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 435 ~~--~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~h~~~v~~~~~~~~~~~ 508 (1128)
++ +++. .....+..+. .+..++|+|+|+. +++++..++.|.+|| .++. .+..+..+ ..+.+++|++ ++
T Consensus 67 ~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--dg 140 (343)
T 1ri6_A 67 IAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--DN 140 (343)
T ss_dssp ECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--TS
T ss_pred ecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--CC
Confidence 98 5542 2222343333 7899999999994 334555689999999 4332 33444433 4588888876 66
Q ss_pred cEEEEEe-ccCcEEEEecCC-CCcee----eecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--Cce--e
Q 001190 509 QFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--K 577 (1128)
Q Consensus 509 ~~l~s~~-~dg~i~~wd~~~-~~~~~----~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--~~~--~ 577 (1128)
+++++++ .++.|++||+.. +.... .... .+..+..++|+|+|+++++++. .++.|.+|++.. ++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 7777777 899999999987 43321 2222 3457889999999998876653 478999999953 433 2
Q ss_pred eEecccc-----CCceeEEEEeCCCCEEEEEE-CCCcEEEEECC--C--CeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 578 RTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--N--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 578 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
..+.... ...+..++|+|++++|+++. .++.|++||+. + .+.+..+.... .+..++|+|++++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2222111 12355799999999888655 78999999998 3 34444444332 37899999999998888
Q ss_pred E-cCCcEEEEEcc
Q 001190 648 T-ADNGFKILANA 659 (1128)
Q Consensus 648 ~-~dg~i~iw~~~ 659 (1128)
+ .++.|.+|+++
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 8 58999999665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-21 Score=212.44 Aligned_cols=245 Identities=9% Similarity=0.118 Sum_probs=175.1
Q ss_pred CCCCeeEEEeccCCCeEEEEe-C-CeEEEEECC--Cce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEec
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV 902 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~ 902 (1128)
+...+.+++|+|||++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 566788999999999988887 4 899999997 554 344555444 789999999 888776555 5889999999
Q ss_pred ---ccceeeecccccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECCC-Cccccee--EEeecCCCCCCCccEEEEcCCC
Q 001190 903 ---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDT-WEKRKSV--TIHIPAGKTPTGDTRVQFNADQ 975 (1128)
Q Consensus 903 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~ 975 (1128)
.+.+.+..+..+ ..+.+++|+|+|++|++++ .|+.|.+||+.+ ++..... .... .....+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---VEGAGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---STTCCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc---CCCCCcceEEECCCC
Confidence 445555555544 4588999999999888776 899999999987 5433222 2221 122567889999999
Q ss_pred CEEEEEe--cCeEEEEecCC--ccc--cccc---ccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecC--CC--ce
Q 001190 976 VRMLVVH--ETQLAIYDASK--MER--IRQW---TPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDAD--TL--RL 1041 (1128)
Q Consensus 976 ~~l~~~~--d~~i~v~d~~~--~~~--~~~~---~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~--~~--~~ 1041 (1128)
++++++. ++.+.+|++.. ++. .... .........+..++|+|||++|+++. .++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9887653 78999999953 332 1111 11111134677899999999888554 79999999998 33 33
Q ss_pred EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCC
Q 001190 1042 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSES 1094 (1128)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~ 1094 (1128)
+..+. .+. .+..++|+| +++.|++++ .|+.|.+|++...
T Consensus 270 ~~~~~------------~~~-~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 270 EGFQP------------TET-QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEE------------CSS-SCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred eeeec------------CCC-ccceEEECC-CCCEEEEecCCCCeEEEEEEcCC
Confidence 33333 111 256799999 578777776 6899999966533
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=208.87 Aligned_cols=289 Identities=11% Similarity=0.045 Sum_probs=200.9
Q ss_pred EEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE
Q 001190 771 LYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1128)
Q Consensus 771 ~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 849 (1128)
.|.+++.+ +++...++.|.+||... ++...... . +...+ .++|+|||++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555555 55666689999997543 22221111 1 34445 99999999977766
Q ss_pred e--CCeEEEEECCCceE-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC---cEEEEecccceeeecccccccCeeEEEE
Q 001190 850 T--GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS---TIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 850 ~--dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 923 (1128)
+ ++.|.+||..+++. ...+..+.....+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence 5 67899999999988 777776666666699999 898888655553 8999999999988877654 45689999
Q ss_pred cCCCCEEEEE-cCCCc-EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc---
Q 001190 924 STSLNILVSS-GADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--- 996 (1128)
Q Consensus 924 s~d~~~l~s~-~~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--- 996 (1128)
+|||++|+++ ..++. |.+|++............... .......++|+|||++++++. ++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 9999855544 55688 999999865433222111111 124578999999999777654 78999999998887
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCC
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1073 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1073 (1128)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+........ ........++|+| |
T Consensus 214 ~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 214 LNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP-----RPLFGANQMALNK-T 283 (331)
T ss_dssp EEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC-----GGGTTCCCEEECT-T
T ss_pred eeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC-----CCcccccceEECC-C
Confidence 665553 46678999999999887655 578899999999987 333331100000 1111124589999 5
Q ss_pred CCEE-EEEECCCcEEEEcCCCCCCCcc
Q 001190 1074 PNQF-AIGLTDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1074 ~~~l-~s~~~dg~i~iWd~~~~~~~w~ 1099 (1128)
+.+| +++..++.|.+||+.+....+.
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCEEEEecCCCCcEEEEEecCCcccce
Confidence 7766 4555667999999988764443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-20 Score=204.99 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=208.8
Q ss_pred cccEEEEEEecCcceEEEeec-------cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 764 SSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
...+..++++|+|+++++++. ++.|.+||.. +++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 446789999999998888774 4577777643 332222111 2334678
Q ss_pred EEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCC---------eeEEEEcCCCCCEEEEEe--CCCcEEEEecc
Q 001190 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGT--EDSTIHIYNVR 903 (1128)
Q Consensus 837 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~---------v~~l~~s~~d~~~lasg~--~dg~v~iwd~~ 903 (1128)
++|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776664 689999999999998888765432 68899999 777666655 58899999999
Q ss_pred cceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 904 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.+++........ .......+..++|+|+|++++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCCcccceEEECCCCCEEEEEeC
Confidence 99998888766667899999999999999999999999999998765544332 111124567899999999888764
Q ss_pred -cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||+.+++.+..+..
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~------------- 312 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT------------- 312 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred CCCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-------------
Confidence 5899999999998877776532 25699999999777665 689999999999998887761
Q ss_pred ccceEEEEEecCCCCEEEEEECCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIGLTDG 1084 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~~~dg 1084 (1128)
...+.+++|+| |+++++.+..++
T Consensus 313 ~~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 PTHPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp CSEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCCeEEEcC-CCCEEEEEEccc
Confidence 12568899999 577666555553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=202.13 Aligned_cols=249 Identities=10% Similarity=0.150 Sum_probs=171.5
Q ss_pred CCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 903 (1128)
+...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999444443 3689999998776 3445455677889999999 888887777 78999999996
Q ss_pred -cc--eeeecccc---------cccCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CCcccceeEEeecCCCCCCCccEEE
Q 001190 904 -VD--EVKSKLKG---------HQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 904 -~~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++.......... ....+..++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~ 193 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLV 193 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC---TTCCEEEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC---CCCCCceEE
Confidence 33 22333221 12348889999999977777778999999998 4543222222221 124567899
Q ss_pred EcCCCCEEEEEe--cCeEEEEecCC--ccc--ccccccCCC---CCCCeEEEEEeeCCCEEEE-EecCCcEEEEecCC-C
Q 001190 971 FNADQVRMLVVH--ETQLAIYDASK--MER--IRQWTPQDA---LSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADT-L 1039 (1128)
Q Consensus 971 ~s~d~~~l~~~~--d~~i~v~d~~~--~~~--~~~~~~~~~---h~~~v~~l~~s~dg~~l~t-~~~dg~i~vwd~~~-~ 1039 (1128)
|+|||++++++. ++.+.+|++.. ++. +..+..... ....+..++|+|||++|++ ...++.|.+|++.. +
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999999877754 78899999874 432 112211110 0145889999999998865 55689999999973 2
Q ss_pred --ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCcEEEEcC--CCCC
Q 001190 1040 --RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVMEP--SESE 1095 (1128)
Q Consensus 1040 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~-dg~i~iWd~--~~~~ 1095 (1128)
+.+..+. .+...+..++|+| |+++|++++. ++.|.+|++ .+++
T Consensus 274 ~~~~~~~~~------------~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 274 HLTLIQQIS------------TEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEEE------------CSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEEeEEEe------------cCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3333333 2233467899999 6887777665 589999954 4444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=203.20 Aligned_cols=268 Identities=7% Similarity=0.001 Sum_probs=199.8
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc-ceEEEEEccCCCEEEE-EeCCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las-~~~d~~i~vwd~~ 436 (1128)
++++++.++.|.+||..+++.+.. +..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 678899999999999998876542 1112222 4788999999987654 4567899999999
Q ss_pred CCCcceeceeecc---cccceeEEEEecCCCeEEEEEec------------CCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 437 ~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s------------~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+++.+..+. +.. |...+.+++|+|||+ ++++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 988665321 111 233688999999999 566554 579999999 77777776664 4457788
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc----------------
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~---------------- 564 (1128)
+|++ ++++|+++ ++.|.+||+.+++....+..... ...+.|+|+|+.++..+. .++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 8866 66777777 68999999988776655554331 112378999987765542 122
Q ss_pred -------eEEEEeCCCCceee-EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 565 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
.|.+||..+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57899999988752 222332 257789999999999888 7999999999999888776542 468999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
|+|++++|++++.++.|.+||+.+++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 99999999999899999999998873
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=198.81 Aligned_cols=303 Identities=9% Similarity=0.045 Sum_probs=207.2
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc--
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 584 (1128)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999988777666654432 4788999999988776653 47899999999999887776432
Q ss_pred --CCceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
...+..++|+|+++++++++ .++.|++||+.+++.+..+.... .+.+++|+|++++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11466799999999999886 57999999999998887776532 47889999999988888 6
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
+.|.+||+.++. ....+..... ...+.++|+|+.++..
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~s~dg~~l~~~----------------------------------- 191 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVWNQ----------------------------------- 191 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCCCC-----------------------------------
T ss_pred CeEEEEECCCCc-Eeeeeecccc------CCCceeCCCccEEeee-----------------------------------
Confidence 899999998773 2222221110 0112556665544211
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
...+....+ +.......++..... .....+.+||
T Consensus 192 --~~~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~v~~~d------------------ 225 (337)
T 1pby_B 192 --HESSGVMAT-------------------------PFYTARKDIDPADPT-AYRTGLLTMD------------------ 225 (337)
T ss_dssp --CTTTTEEEE-------------------------EEEEEBTTSCTTSGG-GEEEEEEEEE------------------
T ss_pred --ccCCCceee-------------------------eeecccccccccccc-ccccceEEEe------------------
Confidence 110100000 000000000000000 0111345554
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
+.+++.....+.. +...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+| ++++|++
T Consensus 226 ----~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 296 (337)
T 1pby_B 226 ----LETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWL 296 (337)
T ss_dssp ----TTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEE
T ss_pred ----CCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEE
Confidence 3444332212222 55678899999999999888 789999999999988887643 4678999999 8888888
Q ss_pred EeCCCcEEEEecccceeeeccccccc
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
++.++.|++||+.+++.+..+..+..
T Consensus 297 ~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 89999999999999988877765533
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=226.97 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=175.3
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc---ceEEEEEccCCCEEEEEe
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~~ 425 (1128)
+++|+|||+ +++++ .|+.|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 66665 699999999999876431 333333 489999999999999987
Q ss_pred C---------CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe-cCCC
Q 001190 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1128)
Q Consensus 426 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-~~h~ 494 (1128)
. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. |+.|++|| .+|+..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998763111 12 25689999999999 577665 78999999 666654432 2333
Q ss_pred CCe-----------------EEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 495 APV-----------------YSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
..| .+++|+| ||++|++++.| +.+.+|.+..... .....+..+.+...|...
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~yp~~g~~~--- 221 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGD-----EQYPRTINIPYPKAGAKN--- 221 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCS-----SSSCEEEEEECCBTTSCC---
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCC-----CCCccceeecCCCCCCCC---
Confidence 222 4788866 77899888765 4555664422211 122345566665555321
Q ss_pred eeccCCCceEEEEeCCCCcee---e-----EeccccCCceeEEEEeCCCCEEEEEECC----CcEEEEE----CCCCeee
Q 001190 557 GTSKDGDSFLVEWNESEGTIK---R-----TYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNIL 620 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~---~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd----~~~~~~~ 620 (1128)
....|++||+.+++.. . .+.++.. .+..++|+||++.+++.... ..|++|| ..+++..
T Consensus 222 -----~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 222 -----PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp -----CEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred -----CeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 2457999999988753 1 1223443 67889999997766664432 3488999 8887765
Q ss_pred EEEe--cCCCCCCcc-----eEEEcCCCCEEEE--EEcCCcEEEE
Q 001190 621 TSTD--AEGGLPNLP-----RLRFSKEGNLLAV--TTADNGFKIL 656 (1128)
Q Consensus 621 ~~~~--~~~~~~~v~-----~v~~sp~~~~l~~--~~~dg~i~iw 656 (1128)
..+. ..++...+. .+.|+|||+.++. ...+|...||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 5442 012222454 7899999996654 4455544444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=197.24 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=185.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|+... ........|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++.... ..+|
T Consensus 26 ~~d~~~--~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~ 82 (297)
T 2ojh_A 26 IFNIRT--RKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGF 82 (297)
T ss_dssp EEETTT--TEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTT
T ss_pred EEeCCC--CceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------cccc
Confidence 444433 44555667899999999999999 567664 88999999988 765431 3334
Q ss_pred -CcceEEEEEccCCCEEEEEe--CCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 406 -PISVSRVAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 406 -~~~V~~l~~spdg~~las~~--~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
...|.+++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+..++|+||++. ++++++.|+.+++|
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIY 156 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEE
Confidence 47899999999999999998 3345556555 4443 22 23333 34899999999994 34478889999999
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecC-CCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
+ ..+.....+..|...+.+++|++ ++++|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 9 55666777888888999999977 567776655 58999999987 445555666677789999999999999988
Q ss_pred eeccC-------CCceEEEEeCCCCceeeE--eccccCCceeEEEEeCCCCEEEEEECCC
Q 001190 557 GTSKD-------GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 557 ~~~~~-------~~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg 607 (1128)
+.+.. .+..|++||+.+++.... +.++.. .+..++|+|++++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 75321 236799999998876443 335554 688899999999999887653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-19 Score=203.11 Aligned_cols=316 Identities=14% Similarity=0.117 Sum_probs=202.8
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCC-CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN-PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
...+..+++++++.++++++.++ +++|+....... ..+.. ...+....... ...+...|.+++|+||
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~v~~l~~spd 103 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDD----PNKIVDKVQGL-------LVPMKFPIHHLALSCD 103 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCC----TTCEEECCCCE-------EECCSSCEEEEEECTT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccC----cccccccCccc-------cccCCCcccEEEEcCC
Confidence 34578899999999999998887 888875432110 00000 00000000000 0125678999999999
Q ss_pred CCeEE----EEe-CCeEEEEECCCc--------e---EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 843 DSYVM----SAT-GGKISLFNMMTF--------K---VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 843 g~~la----~~~-dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
|++|+ +++ |+.|++||+.++ + .+..+.+|...|.+++|+|+++.+||+++.||+|++||+.++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 566 789999998765 2 2455667899999999999548999999999999999999987
Q ss_pred eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC-CCCCCccEEEEcCCCCEEEEEe--c
Q 001190 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVH--E 983 (1128)
Q Consensus 907 ~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~--d 983 (1128)
......+|...|.+++|+|+|++|++|+.||.|++||+. ++....+..+.... .....+.+++|++++.++++.. +
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 777777899999999999999999999999999999998 44333222211110 1113788999999998887643 3
Q ss_pred C------eEEEEecCCcccc-----cccccC----CCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCC--ceE-EE
Q 001190 984 T------QLAIYDASKMERI-----RQWTPQ----DALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTL--RLR-CY 1044 (1128)
Q Consensus 984 ~------~i~v~d~~~~~~~-----~~~~~~----~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~--~~~-~~ 1044 (1128)
| .+++|++.+.+.. ..+... .....+-..+.+-+|.+++++++. .+.|.|...... ... ..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 2 3899999865321 111110 011222334444478888777664 444666664321 111 11
Q ss_pred eCCCCCCCCc-ccCCCCccceEEEEEecC--------------CCCEEEEEECCCcEEEEcCCC
Q 001190 1045 IAPSTYLSPS-VLNGSQTVYPLVVAAHPL--------------EPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1045 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~--------------~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.. ...-... ........+++++++.-. -...|..-+.||.+..|.+-.
T Consensus 343 ~~-d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LE-DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EC-GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cc-ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 1110000 001123445555555321 125688999999999998775
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-20 Score=220.12 Aligned_cols=270 Identities=11% Similarity=0.054 Sum_probs=195.3
Q ss_pred CCcEEEEEEeCCCCcEEEEeec-cCeEEEEEccCCceecccccccccccccCccccceeccCCC-cceEEEEEccCCCEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 421 (1128)
..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 447999999999994 565555 9999999987665432 44444 68999999999 777
Q ss_pred EEEeC---CCeEEEEEccC--CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 422 as~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
++++. +....+|.+.. ...... +..+. .+...+|+|||+.+++++++.|+.+ +|| .+|+...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCEE---CTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCcccc---ccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec-CCC
Confidence 77765 45567766654 222222 22222 3446799999987567777666555 999 6665544443 333
Q ss_pred CeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.+++|+| ||++|++++.+ +.|++||+++++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 6777866 78899988877 78999998876654 56677788999999999999995432 23348999999
Q ss_pred CCCceeeEeccccCCceeEEE--------EeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
.+++.. .+.++.. .+..++ |+|||..+++++.+|.+++|++ ++..... ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEE
Confidence 999887 6666554 555566 9999988888999999999999 6654411 2357899999 9999
Q ss_pred EEEEEcCCc---EEEEEc
Q 001190 644 LAVTTADNG---FKILAN 658 (1128)
Q Consensus 644 l~~~~~dg~---i~iw~~ 658 (1128)
+++++.+.+ +.+|+.
T Consensus 296 l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEcCCCCCCeEEEEcC
Confidence 988887754 555544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-19 Score=203.43 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=176.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE-
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG- 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 422 (1128)
...++.+++++++. ++++|+.++ |+||+...-..... ...+... ...........|.+.|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 44689999999998 678888787 89988643211100 0000000 00001111234677899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------CcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 423 ---VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 423 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
+|+.|+.|+|||+.++ +.+.....+.+|...|++++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999875 333334457789999999999998 66 899999999999999 77777777
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeecc--
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK-- 560 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~~-- 560 (1128)
..+|...|.+++|++ +|++|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999987 57899999999999999987 4444444332 23899999999988887655421
Q ss_pred -CCCceEEEEeCCCCce-----eeEec-------cccCCceeEEEEeCCCCEEEEEE-CCCcEEEEEC
Q 001190 561 -DGDSFLVEWNESEGTI-----KRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1128)
Q Consensus 561 -~~~~~i~~wd~~~~~~-----~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~ 614 (1128)
.....+++|++...+. ...+. +... ....+..-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 1123489999986521 11111 1111 111233336667777765 3444555554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=221.25 Aligned_cols=287 Identities=8% Similarity=0.034 Sum_probs=190.1
Q ss_pred EEEEEEecCcceEEEeec---------cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 767 VVRLLYTNSAVGLLALGS---------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~---------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
+.+++|+|||++|++++. ++.+++||+.. +..+.. .. ....+..+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence 567888999998888776 57788886543 322100 00 12457889
Q ss_pred EeccCCCeEEEEeCCeEEEEECCCceEEEEe-eCCCCC-----------------eeEEEEcCCCCCEEEEEeCCC----
Q 001190 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTF-MSPPPA-----------------STFLAFHPQDNNIIAIGTEDS---- 895 (1128)
Q Consensus 838 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-~~~~~~-----------------v~~l~~s~~d~~~lasg~~dg---- 895 (1128)
+|||||+.||++.++.|++|++.+++..... .++... ..+++||| ||+.||+++.|.
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP 194 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence 9999999999999999999999988775433 222221 25899999 999999987652
Q ss_pred ------------------------------cEEEEecccceee--------ecccccccCeeEEEEcCCCCEEEEEcCC-
Q 001190 896 ------------------------------TIHIYNVRVDEVK--------SKLKGHQKRITGLAFSTSLNILVSSGAD- 936 (1128)
Q Consensus 896 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~~~D- 936 (1128)
.|++||+.+++.. ..+.+|...+..++||||++++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7899999988753 2345788899999999998877774432
Q ss_pred ---CcEEEEE----CCCCcccceeEEeecCCCCCCCcc-----EEEEcCCCCEEEE--Ee-cC--eEEEEecCCcccccc
Q 001190 937 ---AQLCVWS----IDTWEKRKSVTIHIPAGKTPTGDT-----RVQFNADQVRMLV--VH-ET--QLAIYDASKMERIRQ 999 (1128)
Q Consensus 937 ---g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~v~-----~v~~s~d~~~l~~--~~-d~--~i~v~d~~~~~~~~~ 999 (1128)
..|.+|| +.+++........ ...+. ..+. .++|+|||+.++. +. ++ .|.+|++.+++ ...
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~ 351 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHI-EESRT-GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQ 351 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEE-EECSS-SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEE
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecc-cccCC-ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEe
Confidence 2488899 7777655433200 01111 3333 7899999997665 32 33 57778877665 333
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCC--Cce-EEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADT--LRL-RCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
+..+ ...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... . ..+...+..+.|+|
T Consensus 352 lt~~---~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~------~--~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 352 ITSG---KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH------L--RKERCQYYTASFSD 419 (719)
T ss_dssp CSCS---SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT------T--TTTTBCBEEEEECG
T ss_pred cccC---ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc------c--CCCCCceEEEEECC
Confidence 3322 5668888888 88888776654 7889998764 421 2222200 0 01333456789999
Q ss_pred CCCCEEEEEECC--CcEEEEcCCCCC
Q 001190 1072 LEPNQFAIGLTD--GSVKVMEPSESE 1095 (1128)
Q Consensus 1072 ~~~~~l~s~~~d--g~i~iWd~~~~~ 1095 (1128)
+...++++++.+ ..+.+||+.+++
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 533344455555 468899988765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=191.85 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=186.6
Q ss_pred cccCCCCCcce--EEeecCCCcEEEEEEeCCCCcEEEEeec--cCeEEEEEccCCceecccccccccccccCccccceec
Q 001190 327 TWSLDDLPRTV--AVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1128)
Q Consensus 327 ~~~~~~~~~~~--~~~~~h~~~V~~v~fspdg~~lla~gs~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
+|.++...... .....+...+..++|+|||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 55555433333 33455778889999999999 7666543 78999999977663211 113
Q ss_pred cCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCcceeceeecc---------cccceeEEEEecCCCeEEEEEec
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~---------h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
..+...+..++|+|||++|++++ .++.|.+|++.....+.....+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 44677899999999999999888 689999999964333332222221 123488999999999 788888
Q ss_pred CCCeEEEEe-c-CCCeEE--EecCC-CCCeEEEeccCCCCccEEEE-EeccCcEEEEecCCCCcee----eecCCC----
Q 001190 473 DDKLIKVWE-L-SGRKLF--NFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGSRV----DYDAPG---- 538 (1128)
Q Consensus 473 ~d~~i~vWd-~-~g~~~~--~~~~h-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~----~~~~~~---- 538 (1128)
.++.|.+|| . +|+... .+..+ ...+..++|++ +|+++++ ...++.|.+|+++...... .+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 454332 22222 33577889976 6675555 5678999999987522221 122111
Q ss_pred --CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC---ceeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEE
Q 001190 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1128)
Q Consensus 539 --~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iw 612 (1128)
..+..++|+|||++|+++.. .++.|.+|++... +.+..+..+.. .+..++|+|++++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 45889999999998866553 4789999998732 44555554433 5778999999999988875 4899999
Q ss_pred --ECCCCeeeE
Q 001190 613 --DMDNVNILT 621 (1128)
Q Consensus 613 --d~~~~~~~~ 621 (1128)
|.+++++..
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555676553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=210.49 Aligned_cols=235 Identities=13% Similarity=0.165 Sum_probs=177.0
Q ss_pred CcceEEEEEccCCCEEEEEeC-CCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEecC---CCeEEEE
Q 001190 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~---d~~i~vW 480 (1128)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 558999999999999999887 9999999998776443 44555 68999999999 5 6776664 5556666
Q ss_pred e--c--CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d--~--~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
. . .|... .+..+. .+...+|++++++..+++++.++ +.+||+++++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 56555 443332 24456777766655555555554 5599998776554443333 789999999999987
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--cEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+. ++...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~--~~~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE--LPSKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC--CSCSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc--CCCcChhh
Confidence 764333478999999988765 5566554 678899999999999888888 8999999998877 443 33345777
Q ss_pred EE--------EcCCCCEEEEEEcCCcEEEEEc
Q 001190 635 LR--------FSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 635 v~--------~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999987
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=207.01 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=184.3
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc-----ceEEEEEccCCCE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-----SVSRVAWSPDGNY 420 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 420 (1128)
...+++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999998 77775 99999999999886431 344432 3345899999999
Q ss_pred EEEEeCC---------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-
Q 001190 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1128)
Q Consensus 421 las~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~- 489 (1128)
|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .||.+. |+.|++|| .+|...+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 566799999987543 667888999999999999 566664 78999999 56654432
Q ss_pred ecCCCCCe-----------------EEEeccCCCCccEEEEEeccCc-EEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 490 ~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 2477866 7788988876654 8888764322110 1334567777777775
Q ss_pred eEEEeeeccCCCceEEEEeCCC---Cc--eeeEecc------ccCCceeEEEEeCCCCEEEEEEC----CCcEEEEECCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDN 616 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~ 616 (1128)
.. ....|++||+.+ ++ ....+.. +. ..+..++|+|||+.++.... +..|++||+.+
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD-HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC-EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCC-eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 31 244699999998 73 2223332 33 36888999999987666542 34799999998
Q ss_pred Ce----ee--EEEecCCCCCCc-----ceEEEcCCCCEEE-EEEc-CC--cEEEEEcccC
Q 001190 617 VN----IL--TSTDAEGGLPNL-----PRLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (1128)
Q Consensus 617 ~~----~~--~~~~~~~~~~~v-----~~v~~sp~~~~l~-~~~~-dg--~i~iw~~~~~ 661 (1128)
++ +. ..+...++...| ..++|+|||+.++ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 21 111001222223 3789999999887 6653 44 4666766543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=206.32 Aligned_cols=381 Identities=9% Similarity=0.002 Sum_probs=240.6
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc--e--eEEEEeCCCCEEEEEECC---------C
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--N--GVVQFDTTQNHFLAVGED---------S 607 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~s~d---------g 607 (1128)
..++.|+|||+++++. ++.|++||+.+++....+.++.... + ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888774 6789999999999888888776422 2 237899999999998875 6
Q ss_pred cEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
.+++||+.+++.... . .+...+..++|||||+.||.+. ++.|++|++.++....-...+...
T Consensus 93 ~~~~~d~~~~~~~~l-~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~-------------- 154 (740)
T 4a5s_A 93 SYDIYDLNKRQLITE-E--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED-------------- 154 (740)
T ss_dssp EEEEEETTTTEECCS-S--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT--------------
T ss_pred EEEEEECCCCcEEEc-c--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc--------------
Confidence 678999999986542 2 2334689999999999999885 689999998776321111000000
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
.+ ..+. .-.+|.- ...+..
T Consensus 155 ---~~-------------------------------------~~g~---~~~v~~e------------------e~~~~~ 173 (740)
T 4a5s_A 155 ---II-------------------------------------YNGI---TDWVYEE------------------EVFSAY 173 (740)
T ss_dssp ---TE-------------------------------------EESB---CCHHHHH------------------HTSSSS
T ss_pred ---ce-------------------------------------ecCc---ccccccc------------------hhcCCC
Confidence 00 0000 0000000 001223
Q ss_pred EEEEEecCcceEEEeecc-ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
..+.|||||+.|+.+..| +.+.+|++..... .. .+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CSSCEEEEEECCBTTSCC
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CCCCcceeecCCCCcCcC
Confidence 468899999999988765 4488887542110 00 033456677777776431
Q ss_pred EEEeCCeEEEEECCC---ce--EEEEee------CCCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEecccce----e
Q 001190 847 MSATGGKISLFNMMT---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDE----V 907 (1128)
Q Consensus 847 a~~~dg~i~vwd~~~---~~--~~~~~~------~~~~~v~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~ 907 (1128)
...+|++||+.+ ++ ....+. +|...+..++|+| |+++++.... +..|++||+.+++ +
T Consensus 226 ---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 226 ---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp ---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred ---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 123689999998 73 223333 3677799999999 8887665532 3479999999887 3
Q ss_pred eec--c--cccccCee-----EEEEcCCCCEEE-EEcC-C--CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 908 KSK--L--KGHQKRIT-----GLAFSTSLNILV-SSGA-D--AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 908 ~~~--l--~~h~~~V~-----~l~~s~d~~~l~-s~~~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
... + .+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++... +..+. -.+..+. .+|
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-----lT~g~--~~v~~~~-~~d 373 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-----ITKGT--WEVIGIE-ALT 373 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-----SCCSS--SCEEEEE-EEC
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-----cccCC--EEEEEEE-EEe
Confidence 322 2 44655554 789999999877 6653 3 468888988765422 11111 3344433 244
Q ss_pred CCEEEEEe-c-----C--eEEEEecCCcccccccccC-CCCCCCeEEEEEeeCCCEEEEEecC---CcEEEEecCCCceE
Q 001190 975 QVRMLVVH-E-----T--QLAIYDASKMERIRQWTPQ-DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLR 1042 (1128)
Q Consensus 975 ~~~l~~~~-d-----~--~i~v~d~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~t~~~d---g~i~vwd~~~~~~~ 1042 (1128)
++.++... . + .|+..++..+.....+... .........+.|||||++++..... ..+.+++..+++.+
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 66666543 2 2 3444555444332223221 1114568899999999987765433 36889999888766
Q ss_pred EEeC
Q 001190 1043 CYIA 1046 (1128)
Q Consensus 1043 ~~~~ 1046 (1128)
..+.
T Consensus 454 ~~l~ 457 (740)
T 4a5s_A 454 RVLE 457 (740)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-18 Score=191.22 Aligned_cols=295 Identities=11% Similarity=-0.010 Sum_probs=194.6
Q ss_pred EeecCCCcEEE-----EEEeCCCCcEEEEeeccC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 339 VSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 339 ~~~~h~~~V~~-----v~fspdg~~lla~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
....|...+.. .+|||||+++++++..++ .|.+||+.+++... +..+|...+..
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~ 85 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFG 85 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSS
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccc
Confidence 33346656666 899999996544443367 48888888877543 24456666667
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEE--EecCCCeEEEEE-------------------
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVT------------------- 470 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--fs~d~~~~~l~s------------------- 470 (1128)
++|||||++|+.++.++.|++||+.+++.... +..+...+.... +++|++ +++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHH
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceee---eechhhcccccceeECCCCC--eeccccccCcccccccccchhhh
Confidence 88999999999999999999999999875542 334555454444 489998 4542
Q ss_pred ---ecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCCC-C
Q 001190 471 ---CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG-H 539 (1128)
Q Consensus 471 ---~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~-~ 539 (1128)
...+..|.+|| .+|+ ...+..+...+..++|+|. +|+.|+....+ ..|.++|.+............ .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE 238 (388)
T ss_dssp HGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE
T ss_pred hhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc
Confidence 23457899999 5664 4555556777889998661 45677766653 367777776544333322222 3
Q ss_pred eEEEEEEcCCCCeEEEeeeccC-CCceEEEEeCCCCceee--EeccccC--CceeEEEEeCCCCEEEEE---------EC
Q 001190 540 WCTTMLYSADGSRLFSCGTSKD-GDSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV---------GE 605 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~-~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~---------s~ 605 (1128)
.+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. .......|+|||+.|+.. ..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 6788999999998877654221 12359999999987433 3333100 001224799999988764 45
Q ss_pred CCcEEEEECCCCeeeEEEecCCCCC--------CcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 606 DSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.++
T Consensus 319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 6789999999987654443322110 3678899999998887764 6777777654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-17 Score=185.81 Aligned_cols=249 Identities=11% Similarity=0.122 Sum_probs=167.5
Q ss_pred CCCCeeEEEeccCCCeEEEEeC-----CeEEEEECCC--ceE--EEEeeCCCCCeeEEEEcCCCCCEEEEE-eCCCcEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSATG-----GKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHI 899 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~d-----g~i~vwd~~~--~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg-~~dg~v~i 899 (1128)
+...+..++|+|||++|++++. +.|.+|++.. ++. +.....+......+++ ++++|+++ ..++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 3455677999999999988874 6899998865 443 3344445556777777 45555554 47899999
Q ss_pred Eecccceeeeccc--------------ccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCcc------ccee-EEee
Q 001190 900 YNVRVDEVKSKLK--------------GHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEK------RKSV-TIHI 957 (1128)
Q Consensus 900 wd~~~~~~~~~l~--------------~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~~------~~~~-~~~~ 957 (1128)
|++.....+..+. .+...+.+++|+|||++|+++ ..++.|.+|++..... +... ....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9997543332221 122345789999999966554 4588999999886542 2111 0001
Q ss_pred cCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecC--CcE
Q 001190 958 PAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCD--GNI 1031 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--g~i 1031 (1128)
........+..++|+|||++++++. ++.|.+|++.++.. +..+.....+......++|+|||++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 1111125678899999999888765 78999999987644 22232222234567899999999999877654 899
Q ss_pred EEEecC--CCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCC--CCC
Q 001190 1032 GVFDAD--TLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPS--ESE 1095 (1128)
Q Consensus 1032 ~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~--~~~ 1095 (1128)
.||++. +++. +..+. . ...+.+++|+| |+++|++++ .++.|.+|++. +++
T Consensus 285 ~v~~~~~~~g~~~~~~~~~------------~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQL------------T-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEEECTTTCCEEEEEEEE------------C-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEcCCCCcEEEeeEec------------C-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCc
Confidence 999995 5553 33333 1 23456899999 688777776 77999996554 544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-18 Score=189.76 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=187.5
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCEEEE-EeC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGV-AFT 426 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las-~~~ 426 (1128)
.++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457888887 788889999999999998876542 22 12235789999999997654 456
Q ss_pred CCeEEEEEccCCCcceeceeeccc-----ccceeEEEEecCCCeEEEEEecCC------------CeEEEEe-cCCCe--
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGRK-- 486 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h-----~~~v~~l~fs~d~~~~~l~s~s~d------------~~i~vWd-~~g~~-- 486 (1128)
++.|.+||+.+++.+.... + .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8999999999987655321 1 22 33488999999999 56666654 8999999 66433
Q ss_pred -EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------------------C---eE
Q 001190 487 -LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (1128)
Q Consensus 487 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~i 541 (1128)
+..+.. ...+.+++|++ +++ +++++ +.|.+||+.+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 334443 33578888876 556 55554 449999998877665554332 0 34
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeee
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
..+++++++........ ....+..++..+++....-.......+..++++| ++++++++ ++.|++||+.+++.+
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 55667766532211110 0112233555555432211111223677899999 99999888 889999999999988
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 289 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 289 KAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 8876432 4689999999999988888999999999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-17 Score=181.50 Aligned_cols=271 Identities=14% Similarity=0.147 Sum_probs=184.7
Q ss_pred EEEEee----ccCeEEEEEcc--CCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC----C
Q 001190 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1128)
Q Consensus 359 lla~gs----~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~ 428 (1128)
++++|+ .++.|.+|+++ +|+.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 556664 35689999875 4443211 112 66788899999999999999876 7
Q ss_pred eEEEEEccCC-CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe------cC--------
Q 001190 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1128)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~------~~-------- 492 (1128)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999863 223333334445566777888 7874 445555789999999 433322111 11
Q ss_pred CCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCCCCc------e-------eeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~------~-------~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+...+.+++|+| +|+++++++ .++.|++|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357889976 667665554 588999999876553 1 122334456789999999998887763
Q ss_pred ccCCCceEEEEeCCCCce--eeEecccc--CCceeEEEEeCCCCEEEEEECC--CcEEEEECC--CCe--eeEEEecCCC
Q 001190 559 SKDGDSFLVEWNESEGTI--KRTYAGFR--KKSNGVVQFDTTQNHFLAVGED--SQIKFWDMD--NVN--ILTSTDAEGG 628 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~~~~~~~~ 628 (1128)
.++.|.+|++.+++. +..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 478899999987754 23332221 1235689999999999777654 899999985 454 3444443 2
Q ss_pred CCCcceEEEcCCCCEEEEEE-cCCcEEEEEcc
Q 001190 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~ 659 (1128)
..+..++|+|||++|++++ .++.|.+|+++
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999999888 57899997665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=190.76 Aligned_cols=244 Identities=10% Similarity=0.042 Sum_probs=181.1
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
++++++++..+++++.++.|.+||... ++.... +.. .....+..++|+|||+++++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~-~~~-~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS----------------------DTVYKS-CVM-PDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT----------------------TEEEEE-EEC-SSCCSSCEEEECTTSSEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC----------------------CcEEEE-Eec-CCCCCCceeEECCCCCEEEE
Confidence 456778888899999999999998643 221111 110 01125778999999997765
Q ss_pred Ee--CCeEEEEECCCceEEEEeeCCC------CCeeEEEEcCCCCCEEEEEeCC------------CcEEEEecccceee
Q 001190 849 AT--GGKISLFNMMTFKVMTTFMSPP------PASTFLAFHPQDNNIIAIGTED------------STIHIYNVRVDEVK 908 (1128)
Q Consensus 849 ~~--dg~i~vwd~~~~~~~~~~~~~~------~~v~~l~~s~~d~~~lasg~~d------------g~v~iwd~~~~~~~ 908 (1128)
+. ++.|.+||+.+++.+..+..+. ..+.+++|+| ++++|++++.+ +.|.+||+.+++..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 54 6889999999999887776432 2378999999 89999888865 89999999986543
Q ss_pred e---cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC------------------------
Q 001190 909 S---KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK------------------------ 961 (1128)
Q Consensus 909 ~---~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~------------------------ 961 (1128)
. .+. +...+.+++|+|||+ ++.++. .|.+||+.+++....+........
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred ceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 3 333 334688999999999 555544 499999998876543322110000
Q ss_pred --------------------------------------CCCCccEEEEcC-CCCEEEEEecCeEEEEecCCccccccccc
Q 001190 962 --------------------------------------TPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMERIRQWTP 1002 (1128)
Q Consensus 962 --------------------------------------~~~~v~~v~~s~-d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 1002 (1128)
....+..++|+| ||++++++ ++.|.+||+.+++.+..+..
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC
Confidence 001345678889 99999988 89999999999988777654
Q ss_pred CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1003 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
...+.+++|+|||++|++++.++.|++||+++++.+..+.
T Consensus 294 ----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 294 ----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp ----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred ----CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 3456799999999999998889999999999999888876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=188.43 Aligned_cols=248 Identities=11% Similarity=0.096 Sum_probs=171.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECC-CceEEEEeeC-CCCCeeEEEEcCCCCC--EEEEEe-------------CC
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMM-TFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGT-------------ED 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~l~~s~~d~~--~lasg~-------------~d 894 (1128)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988884499999997 7776543321 113466799999 888 455553 68
Q ss_pred CcEEEEecc-cceeeeccc----ccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECC-CCcccceeEEeecCCCCCCCcc
Q 001190 895 STIHIYNVR-VDEVKSKLK----GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
|++.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++||+. +++........... ....+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 465544433 2456799999999999888765 46799999998 66643222222111 125688
Q ss_pred EEEEcCCCCEEEEEe--cCeEEEEecC--Ccccc------cccccC-CCCCC------CeEEEE-EeeCCCEEEEEecCC
Q 001190 968 RVQFNADQVRMLVVH--ETQLAIYDAS--KMERI------RQWTPQ-DALSA------PISCAV-YSCNSQLVFATFCDG 1029 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~~------~~~~~~-~~h~~------~v~~l~-~s~dg~~l~t~~~dg 1029 (1128)
.++|+|||++++++. ++.+.+|++. +++.. ..+... ..|.. .+..++ |||||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988865 6789999865 45432 112111 11121 488999 999999998776433
Q ss_pred ------cEEEEecC-CCceEEE---eCCCCCCCCcccCCCCccceEEEEEecC--CCCEEEEEEC-CCcEEEEcCCCC
Q 001190 1030 ------NIGVFDAD-TLRLRCY---IAPSTYLSPSVLNGSQTVYPLVVAAHPL--EPNQFAIGLT-DGSVKVMEPSES 1094 (1128)
Q Consensus 1030 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~s~~~-dg~i~iWd~~~~ 1094 (1128)
.|.+|++. +|+.... .. .+...+..++|+|. |+++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSP------------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEE------------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeee------------cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6765431 21 11112345789994 5788888876 489999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=183.28 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=173.5
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEcc-CCCcceeceeecccccceeEEEEecCCCeEEEEEec-----------
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG----------- 472 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s----------- 472 (1128)
+...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34468899999999999999888 99999997 77543311 11111 336679999999953455554
Q ss_pred --CCCeEEEEe-c-CCCeEEEec----CCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecC-CCCcee--eec--CCC
Q 001190 473 --DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRV--DYD--APG 538 (1128)
Q Consensus 473 --~d~~i~vWd-~-~g~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~--~~~--~~~ 538 (1128)
.++++.+|+ . +|+....+. .+...+.+++|++ +|++++++. .++.|++|+++ +++... .+. .++
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 4 576654443 2556789999976 667787765 46899999998 554332 232 235
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC--CCcee---eEecccc----C-C-------ceeEEE-EeCCCCEE
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIK---RTYAGFR----K-K-------SNGVVQ-FDTTQNHF 600 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 600 (1128)
..+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999887763 36789998765 56543 1222111 1 1 367789 99999998
Q ss_pred EEEECCC------cEEEEECC-CCeeeEE---EecCCCCCCcceEEEcC---CCCEEEEEEcC-CcEEEEEcccC
Q 001190 601 LAVGEDS------QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1128)
Q Consensus 601 ~~~s~dg------~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~ 661 (1128)
++++.+. .|.+|++. +++.... ..... ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8776432 89999996 5665432 22222 2467899999 89999999864 89999998764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=188.68 Aligned_cols=253 Identities=10% Similarity=0.005 Sum_probs=173.5
Q ss_pred ccCCCcceEE-----EEEccCCCEEEEEeC-CC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC
Q 001190 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1128)
Q Consensus 402 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~ 473 (1128)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655555 899999999999987 66 48888998887554 2445666666789999999 7888888
Q ss_pred CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe----------------------ccCcEEEEecCCCCc
Q 001190 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------------------IDGKIKAWLYDTMGS 530 (1128)
Q Consensus 474 d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~~wd~~~~~~ 530 (1128)
++.|++|| .+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777776666666656555543355777776432 346799999987654
Q ss_pred eeeecCCCCeEEEEEEcC-CCCeEEEeeeccC--CCceEEEEeCCCCceeeEeccccC-CceeEEEEeCCCCEEEEEEC-
Q 001190 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE- 605 (1128)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~- 605 (1128)
. .+..+...+..+.|+| ||+.|+.+..... ....|.++|...++... +..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999988764211 14478888887665433 333332 24667899999998876553
Q ss_pred C----CcEEEEECCCCeeeEEEecCCCC---CCcceEEEcCCCCEEEEE---------EcCCcEEEEEcccC
Q 001190 606 D----SQIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1128)
Q Consensus 606 d----g~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~ 661 (1128)
+ +.|++||+.+++........+.. .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2 23999999998754433322200 012345799999988754 34568889988765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-16 Score=171.83 Aligned_cols=312 Identities=9% Similarity=0.094 Sum_probs=208.0
Q ss_pred CccEEEEEe------ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCCCC
Q 001190 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (1128)
Q Consensus 507 ~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~~~ 574 (1128)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... +..++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 456666653 4789999999888777666655444 89999999999987531 112567999999999
Q ss_pred ceeeEecccc-----CCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEE-EecCCCCCCcceEEEcCCC-CEEE
Q 001190 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1128)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~-~~l~ 645 (1128)
+.+.++.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 124566899999999999874 68999999999998877 65432 1335677765 6778
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+.+.||.+.+|+.............
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~------------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS------------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC-------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeeccc-------------------------------------------------------
Confidence 8889999999987542121100000
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
..+|+.. ... ..+.+++++..++..+.++.+.++|+...... .
T Consensus 193 ------------~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-----~ 235 (361)
T 2oiz_A 193 ------------KQMFSVK-------------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-----V 235 (361)
T ss_dssp ------------CCCSCTT-------------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-----E
T ss_pred ------------cceEcCC-------------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce-----e
Confidence 0001100 000 01112445555555566777777776422100 0
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe------------CCeEEEEECCCceEEEEeeCCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~ 873 (1128)
...|...........+ .......++|+||++.+.++. .+.|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 0011111100000000 011222478999988777653 2379999999999999998776
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCC
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+.+++|+| |+++|++++. ++|.+||..++ +.+.++..+......++++|+|+
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8889988886 99999999999 99988866777788999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=170.98 Aligned_cols=294 Identities=9% Similarity=0.065 Sum_probs=197.0
Q ss_pred CCCcEEEEe-----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC---
Q 001190 355 SHQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT--- 426 (1128)
Q Consensus 355 dg~~lla~g-----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--- 426 (1128)
++++++++- ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 555444432 2478999999998886542 3334444 8999999999999863
Q ss_pred -------CCeEEEEEccCCCcceeceeecc---cccceeEEEEecCCCeEEEEEec--CCCeEEEEe-cCCCeEEE-ecC
Q 001190 427 -------KHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEG 492 (1128)
Q Consensus 427 -------d~~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd-~~g~~~~~-~~~ 492 (1128)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 56799999998877664432211 234578899999999 455544 368999999 88877776 542
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-------eecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-------~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.+ ...+.+.+.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+ .++.
T Consensus 151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~----~~~~ 222 (361)
T 2oiz_A 151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS----YYGN 222 (361)
T ss_dssp -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB----TTSE
T ss_pred -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe----CCCe
Confidence 22 2234444543 3678888999999999986533322 11111222 1333467777766665 3678
Q ss_pred EEEEeCCCCce--eeEecccc------C---CceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCeeeEEE
Q 001190 566 LVEWNESEGTI--KRTYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 566 i~~wd~~~~~~--~~~~~~~~------~---~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~~ 623 (1128)
+.++|+..... ...+.... . .....++|++++++++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 99999875542 22221100 0 01223789999988887653 358999999999999998
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC--ccccccccCCccccccCcceeeeeecccc
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG--LRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
..+. +.+++|+|||++|++++. +.|.+||..++ +.. ..+.. .......++++|+|+
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~-----~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL-RTIEG-----AAEASLQVQFHPVGG 360 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE-EEETT-----SCSSEEEEEECCCSC
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee-EEecc-----CCCCcEEEEecCCCC
Confidence 8654 789999999999998887 99999999887 433 22211 112345688888875
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=180.23 Aligned_cols=283 Identities=10% Similarity=-0.034 Sum_probs=183.3
Q ss_pred EEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 77889999999655554433 3688889887764321 22222233347899999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeE-------------------EEEecCCCeEEEEEe-----cCCCeEEEE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~fs~d~~~~~l~s~-----s~d~~i~vW 480 (1128)
+.++.|.+||+.+++.... ...+...... ++|+|+++. ++.. ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVI---YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEEE---EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 9999999999998875432 2223332222 356777773 3332 456789999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCe
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~ 552 (1128)
| .+++... +..+...+..+.|++. ++..|+..+.+ ..|.+|+++........... ...+..++|+|||++
T Consensus 174 d~~~g~~~~-~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEV-IHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEe-eccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 6665543 4456677888999762 34556555443 35888887654433322221 336888999999998
Q ss_pred EEEeeecc-CCCceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEE----------------CCCcEEEEEC
Q 001190 553 LFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1128)
Q Consensus 553 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----------------~dg~i~iwd~ 614 (1128)
|+..+... ...+.|++||+.+++........ ... +.|+| +++.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88775421 11245999999988764433221 123 88999 999888765 3478999999
Q ss_pred CCCeeeEEEecCCCC--------CCcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
.+++........... ..+..++|+|||+.|+.++. ++...+|.+.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 888764433222110 02466899999999887775 4555555443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=180.31 Aligned_cols=318 Identities=8% Similarity=-0.028 Sum_probs=203.7
Q ss_pred EEEeCCCCceeeEeccccCC----ceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 567 VEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
..+|..+++.+..+..+... .+..++|+|+|++|+.+... ..|++||+.+++......... .....+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC
Confidence 34577788777777654331 25668899999998887643 478999999887655433221 1234488999
Q ss_pred CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCC
Q 001190 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1128)
||+.|+.++.++.|++|++.++... .....
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~-~~~~~------------------------------------------------- 120 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQ-VIYTV------------------------------------------------- 120 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-EEEEC-------------------------------------------------
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcE-EEEec-------------------------------------------------
Confidence 9999999999999999998765211 00000
Q ss_pred CCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCC
Q 001190 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1128)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 799 (1128)
+.. ++++|+.++....++...+|.
T Consensus 121 -------------------------------------------~~~------~~~~g~~l~~~~~~~~~~~~~------- 144 (396)
T 3c5m_A 121 -------------------------------------------DEE------WKGYGTWVANSDCTKLVGIEI------- 144 (396)
T ss_dssp -------------------------------------------CTT------EEEEEEEEECTTSSEEEEEEE-------
T ss_pred -------------------------------------------ccc------cCCCCCEEEeccCCccccccc-------
Confidence 000 334444444444433333331
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE------eCCeEEEEECCCceEEEEeeCCCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA------TGGKISLFNMMTFKVMTTFMSPPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~dg~i~vwd~~~~~~~~~~~~~~~ 873 (1128)
..++++||++.++.. .+..|.+||+.+++..... .+..
T Consensus 145 -----------------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~ 188 (396)
T 3c5m_A 145 -----------------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA 188 (396)
T ss_dssp -----------------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred -----------------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence 012466788776654 2456999999988765554 3566
Q ss_pred CeeEEEEcCCCCCEEEEEeCC------CcEEEEecccceeeeccccc-ccCeeEEEEcCCCCEEEEEcCC-----CcEEE
Q 001190 874 ASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGAD-----AQLCV 941 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~~~D-----g~i~i 941 (1128)
.+..+.|+|++++.|+..+.+ ..|.+|++..++........ ...+..++|+|||++|+.++.+ +.|++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 789999999446656655543 46888998766543333321 2357889999999988877544 44999
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe-----------------cCeEEEEecCCcccccccccC
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-----------------ETQLAIYDASKMERIRQWTPQ 1003 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-----------------d~~i~v~d~~~~~~~~~~~~~ 1003 (1128)
||+.+++...... .. ... +.|+| ||++++.+. +..|++||+.+++.. .+..+
T Consensus 269 ~d~~~g~~~~l~~---~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 269 ANPETLENEEVMV---MP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp ECTTTCCEEEEEE---CC-----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred EECCCCCeEEeee---CC-----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 9999876432211 11 122 89999 999888642 368999999877653 23222
Q ss_pred CCCCC-----------CeEEEEEeeCCCEEEEEec-CCcE--EEEecCCCce
Q 001190 1004 DALSA-----------PISCAVYSCNSQLVFATFC-DGNI--GVFDADTLRL 1041 (1128)
Q Consensus 1004 ~~h~~-----------~v~~l~~s~dg~~l~t~~~-dg~i--~vwd~~~~~~ 1041 (1128)
.. .+..++|+|||++|+.++. ++.. +++++.+++.
T Consensus 339 ---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 339 ---STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp ---CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ---CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 22 2567889999998887664 4554 4445555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-15 Score=181.07 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=176.4
Q ss_pred eeccCCCcceEEEEEccCCCEEEEE--eCCCeEEEEEccCCCcceeceeeccccccee---------EEEEe--cCCCeE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKLL 466 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~---------~l~fs--~d~~~~ 466 (1128)
..+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3477899999999999987777777 558899999975444333 3556766666 67676 999941
Q ss_pred EEEEec-CCCeEEEEecC--C-CeEEEecC-----CCCCeEEEeccCCCCccEEEEEecc----------CcEEEEecCC
Q 001190 467 CVVTCG-DDKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLYDT 527 (1128)
Q Consensus 467 ~l~s~s-~d~~i~vWd~~--g-~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~~wd~~~ 527 (1128)
|+.++ .+..|.+|+.. | .....+.. |...+.+++|+| ||+.|++++.+ ..|++||+..
T Consensus 94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 44443 35677777754 3 45566665 667788999977 77899988877 5899999987
Q ss_pred C-----Cceeeec-CCCCeEEEEEEcCCCCeEEEeeeccC----CCceEEEEeCC-CC---ceeeEeccccCCceeEEEE
Q 001190 528 M-----GSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVVQF 593 (1128)
Q Consensus 528 ~-----~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~ 593 (1128)
. +....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEE
Confidence 2 2334444 55567888999999999998775321 13589999999 57 4433333333 37888999
Q ss_pred eCCCCEEEEEECCC--cEEEEECCCCeeeEEEecCCCC------CCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 594 DTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 594 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.++||.++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999777777788 6777777677655443322111 01457788888888888887 888888543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-15 Score=182.71 Aligned_cols=286 Identities=11% Similarity=0.023 Sum_probs=187.8
Q ss_pred cCCCcEEEEEEeCCCCcEEEEe--eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE---------
Q 001190 342 HQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--------- 410 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~g--s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 410 (1128)
+|...|..++|++++- +++.+ +.++...||....+.... .+..|...|.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4778899999998865 55555 457899999964443322 1444555555
Q ss_pred EEEEc--cCCCE-EEEEeC-CCeEEEEEcc--C-CCcceeceeecc-----cccceeEEEEecCCCeEEEEEecCC----
Q 001190 411 RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD---- 474 (1128)
Q Consensus 411 ~l~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~fs~d~~~~~l~s~s~d---- 474 (1128)
..+|+ |||++ |+.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99999 876654 5567677765 3 43 23 2444 677899999999999 67777666
Q ss_pred ------CeEEEEecCC------CeEEEec-CCCCCeEEEeccCCCCccEEEEEecc--------CcEEEEecC-CC---C
Q 001190 475 ------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM---G 529 (1128)
Q Consensus 475 ------~~i~vWd~~g------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~-~~---~ 529 (1128)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|++||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999444 4455665 6666778888866 77889887755 379999998 44 2
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC-------ceeEEEEeCCCCEEEE
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 602 (1128)
.......+...+..+.|+|||++++++. .++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333334467899999999999554443 223347888888777765444433221 1456889999999999
Q ss_pred EECCCcEEEE--ECCCCeeeEEEecCCCCCCcceE-EEcCCCCEEEEEEcCCc--EEEEEcccC
Q 001190 603 VGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADNG--FKILANAIG 661 (1128)
Q Consensus 603 ~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~--i~iw~~~~~ 661 (1128)
++. +.+++| |..+++ +..+..+ ...+..+ +++++.-.+++++.+.. |.++++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 666666 4444433 3345555 44333333344454544 444555454
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-15 Score=161.83 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=185.8
Q ss_pred CCCeeEEEeccCCCeEEEEeCC-------------------------eEEEEECCCceEEEEee-CCCCCeeEEEEcCCC
Q 001190 831 EEAVPCIALSKNDSYVMSATGG-------------------------KISLFNMMTFKVMTTFM-SPPPASTFLAFHPQD 884 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg-------------------------~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d 884 (1128)
-..+.+++++++|+++++..++ .|.+||..+++.+..+. ++-.....+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4569999999999999888733 69999999999877665 3445789999999 8
Q ss_pred CCEEEEEeCCCcEEEEecccce-eeecc---------cccccCeeEEEEcC-CCCEEEEEc-CCCcEEEEECCCCcccce
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDE-VKSKL---------KGHQKRITGLAFST-SLNILVSSG-ADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~~-~Dg~i~iwd~~~~~~~~~ 952 (1128)
++++++...++.|++|+..... .+..+ .++.....+++++| ++.++++.+ .++.|++|+. .++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8899999999999999976442 34444 34555789999999 788888886 6899999994 4554333
Q ss_pred eEEeecC----CCCCCCccEEEEcCC-CCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEee------CCC
Q 001190 953 VTIHIPA----GKTPTGDTRVQFNAD-QVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC------NSQ 1020 (1128)
Q Consensus 953 ~~~~~~~----~~~~~~v~~v~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~------dg~ 1020 (1128)
+...... .........++++|+ +.++++. .++.|++|+..+++.+..+... .+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecCCEEEEeCCC
Confidence 3221100 001134789999999 5544443 3789999999988887776543 2367788999999 444
Q ss_pred EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1021 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
..++...+..|++||+.+++.+..+... ..+...+.+++++| ++.++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~---------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV---------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS---------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC---------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333344568999999999998887521 13445678999999 5789999999999999998653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-13 Score=162.42 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=220.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc--cCccccccccCCc
Q 001190 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPP 672 (1128)
Q Consensus 595 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 672 (1128)
+.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +. .....+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~--- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK--- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe---
Confidence 334456666789999999999999998887532 35689999999999999999999999985 32 1111100
Q ss_pred cccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCce
Q 001190 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (1128)
Q Consensus 673 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 752 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEecCCCCCcccEEEEEEe----cCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccC
Q 001190 753 RLVTMPESTDTSSKVVRLLYT----NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827 (1128)
Q Consensus 753 ~~~~~~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1128)
.......++|+ |||++++++.. ++.+.++|....+ ..... ..+..-.....
T Consensus 238 ----------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i-------~~~~~~~~~~~- 293 (567)
T 1qks_A 238 ----------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQ-------STRGMTYDEQE- 293 (567)
T ss_dssp ----------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEE-------ECCEECTTTCC-
T ss_pred ----------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEE-------ecccccccccc-
Confidence 11124678899 69998888776 5888888743211 11100 00000000000
Q ss_pred CCC-CCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEE--EEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEe
Q 001190 828 VNL-EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYN 901 (1128)
Q Consensus 828 ~~~-~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd 901 (1128)
.| ...+..+.+++++..++... .|+|.++|..+.+.+ ..+. .......+.|+| ++++++++. .++.|.++|
T Consensus 294 -~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 294 -YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVID 370 (567)
T ss_dssp -EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEE
T ss_pred -ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEE
Confidence 02 23678899999987766654 689999999875432 2222 334567889999 788766554 678999999
Q ss_pred cccceeeecccc-----cccCeeEEEEcCCCC-EEEEEc-CCCcEEEEECCC-------CcccceeEEeecCCCCCCCcc
Q 001190 902 VRVDEVKSKLKG-----HQKRITGLAFSTSLN-ILVSSG-ADAQLCVWSIDT-------WEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 902 ~~~~~~~~~l~~-----h~~~V~~l~~s~d~~-~l~s~~-~Dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.+++.+..+.. |.+....+ ++|++. .+++.. .++.|.++|..+ .+.++.+... + ....
T Consensus 371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~---g---~g~~ 443 (567)
T 1qks_A 371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL---G---GGSL 443 (567)
T ss_dssp TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS---C---SCCC
T ss_pred CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC---C---CCCE
Confidence 999987766543 43323222 578754 445543 468999999988 3333322221 1 2235
Q ss_pred EEEEcCCCCEEEEEe--------cCeEEEEecCCc-----ccc-ccc-----ccCCCCCCCeEEEEEeeCCCEEEEEec-
Q 001190 968 RVQFNADQVRMLVVH--------ETQLAIYDASKM-----ERI-RQW-----TPQDALSAPISCAVYSCNSQLVFATFC- 1027 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--------d~~i~v~d~~~~-----~~~-~~~-----~~~~~h~~~v~~l~~s~dg~~l~t~~~- 1027 (1128)
.+..+|+++++.+.. .++|.|+|+.+. ... ..+ .....-...+..+.|++||+++.++..
T Consensus 444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence 578999999999864 358999999877 211 111 111111467899999999998887643
Q ss_pred ----CCcEEEEecCCCceEEEeC
Q 001190 1028 ----DGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1028 ----dg~i~vwd~~~~~~~~~~~ 1046 (1128)
++.|.|+|.++++++..+.
T Consensus 524 ~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 524 GKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCcEEEEECCCceEEEEeC
Confidence 7999999999999998887
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-11 Score=146.21 Aligned_cols=585 Identities=10% Similarity=0.047 Sum_probs=335.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|+++.-.++|..+ .|+.+| +..|| |... +.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~lW--igT~~G-L~ryD---G~~f-----~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNMW--FATYDG-VNKYD---GYAF-----TVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSCEE--EEETTE-EEEEC---SSCE-----EEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCCEE--EeecCc-CcccC---CCce-----EEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 3479999999999733 455665 45565 3221 11111000 00 000246799999999987665
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccc----cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC-C-CCC
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~-h-~~~ 496 (1128)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.|..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 44555 8899987764322 21111 1289999998887 344 343 5688999 54433 22221 1 112
Q ss_pred -eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 -v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|.++.... ++ .|..++.++.+..|+.......... ......|.++...++|.+.+... ...+..||..++
T Consensus 174 ~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTT
T ss_pred ceEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCC
Confidence 77776643 44 4555666656888887665433221 12345688888888887665442 334889998876
Q ss_pred ceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-----CCCCCcceEEEcCCCCE
Q 001190 575 TIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 575 ~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~ 643 (1128)
+....... .....|.++...++|.. ..|+.+ .|.+||..+++........ -....|.++...++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~- 322 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG- 322 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-
Confidence 65433221 11235888888877764 445555 6899998887654432211 1123688888888876
Q ss_pred EEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1128)
|.+|+.++-|..|+..+.. +...... +...
T Consensus 323 lWigt~~~Gl~~~~~~~~~--~~~~~~~---------------~~~~--------------------------------- 352 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNR--FKNIRNI---------------PYKN--------------------------------- 352 (795)
T ss_dssp EEEEESSSCEEEECGGGGS--SEEECCC---------------TTSS---------------------------------
T ss_pred EEEEECCCCeEEeCCCccc--ceEEcCC---------------CCCC---------------------------------
Confidence 4556667778777754431 1110000 0000
Q ss_pred CCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
......|.++...++|. |-.++.++-+..|+......
T Consensus 353 -------------------------------------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~----- 389 (795)
T 4a2l_A 353 -------------------------------------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF----- 389 (795)
T ss_dssp -------------------------------------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-----
T ss_pred -------------------------------------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-----
Confidence 00334578888888887 44566665677776432110
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEeCCeEEEEECCCceEEEEee----CCCCCeeEE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM----SPPPASTFL 878 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l 878 (1128)
+.+....+.. -.. -....|.+++..++|+ +.+...++.|.+||..+++...-.. .+...|.++
T Consensus 390 -------~~~~~~~~~~----~~~-l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 390 -------TSYTLQEDES----ARG-IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp -------EEECCC----------C-CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred -------EEEecCCCCc----ccC-CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 0010000000 000 0245689999999998 4444446789999998876543321 134578999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecccceeeeccc------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 879 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
...+ ++.+.+. +. +.|.+|+..+++...... .+...|.++...++|.+.+... + -|..||..+++. .
T Consensus 458 ~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~ 530 (795)
T 4a2l_A 458 LPDG-EGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--Q 530 (795)
T ss_dssp EECS-SSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--E
T ss_pred EECC-CCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--E
Confidence 9988 7776554 44 458899988775543221 1236789999999998777554 4 488899877543 1
Q ss_pred eEEe-ecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCC-CCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 953 VTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 953 ~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
.... .........+.++..+++|.+.+++.. .+..||..+++... +....+ ....|.++...++|++.+++ ++-
T Consensus 531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~G 606 (795)
T 4a2l_A 531 KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRG 606 (795)
T ss_dssp ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTE
T ss_pred EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCc
Confidence 1100 011111256788899999987665554 88999987664322 221111 14568899888889866655 456
Q ss_pred EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1031 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1031 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|..|+.++++.. .+.....+. .......++...+ ++ .|..|+.+|- ..++...
T Consensus 607 l~~~~~~~~~~~-~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~Gl-~~~~p~~ 659 (795)
T 4a2l_A 607 ISCFNPETEKFR-NFTESDGLQ------SNQFNTASYCRTS-VG-QMYFGGINGI-TTFRPEL 659 (795)
T ss_dssp EEEEETTTTEEE-EECGGGTCS------CSCEEEEEEEECT-TS-CEEEEETTEE-EEECGGG
T ss_pred eEEEcCCCCcEE-EcCCcCCCc------cccCccCceeECC-CC-eEEEecCCce-EEEcHHH
Confidence 888999877654 333111111 1111123445544 44 4666777775 4456543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=159.28 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=182.3
Q ss_pred CcEEEEEEeCCCCcEEEEeecc------------------------CeEEEEEccCCceecccccccccccccCccccce
Q 001190 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1128)
+.|.+++|+|+|+ ++++.+.+ +.|.+||..+|+.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4699999999998 66777666 4799999888876531
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC-cceeceee------cccccceeEEEEec-CCCeEEEEEec
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI------DAHVGAVNDLAFAY-PNKLLCVVTCG 472 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~------~~h~~~v~~l~fs~-d~~~~~l~s~s 472 (1128)
.-.++-.....++++|+|+++++...++.|++||.+... .+..+... .++......++|+| +|. ++++.+
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~ 162 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDG 162 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEEC
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeC
Confidence 122455678999999999988888889999999986542 23321000 24555789999999 677 677775
Q ss_pred -CCCeEEEEecCCCeEEEecCC----------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCC
Q 001190 473 -DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGH 539 (1128)
Q Consensus 473 -~d~~i~vWd~~g~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~ 539 (1128)
.++.|++||.+|..+..+... -.....+++.++ .+.++++...++.|++|+.++++....+. ....
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 689999999888888777432 234788999763 25777888889999999998777666653 3455
Q ss_pred eEEEEEEcCCCCeEEEeee---ccCCCceEEEEeCCCCceeeEec---cccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 540 WCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
.+..++++| +..+...+. .......|++|+..+++.+..+. ++.. ....++++++|..+++...++.|++|+
T Consensus 242 ~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 433333221 01135589999999999998874 3333 578899999997777777899999999
Q ss_pred CCC
Q 001190 614 MDN 616 (1128)
Q Consensus 614 ~~~ 616 (1128)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-13 Score=155.95 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=140.9
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC--CCCceeeecCCCCeEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~ 543 (1128)
++++...+++|.++| .+++.+..+... ..+..+.|++ ||+++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788899999999999 888888888643 3567888866 77899999999999999995 5555555554 445789
Q ss_pred EEEc----CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc----------cCCceeEEEEeCCCCEEEE-EECCCc
Q 001190 544 MLYS----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFLA-VGEDSQ 608 (1128)
Q Consensus 544 ~~~s----~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~s~dg~ 608 (1128)
++|+ |||++++++.. ..+.+.++|..+.+.+..+... ....+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 4789999999999988876532 1224667788887665544 457799
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccC
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 661 (1128)
|.++|..+.+......... ......+.|+|++++++++. .++.|.++|+.++
T Consensus 322 v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 9999988764333222111 12456889999999988776 4788999998765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-14 Score=151.34 Aligned_cols=246 Identities=12% Similarity=0.132 Sum_probs=177.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE-ccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 421 (1128)
+-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 77887889999999987 544321000 0001235567899999 5777777
Q ss_pred EEEeC-CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec--CCCCCeE
Q 001190 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPVY 498 (1128)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~--~h~~~v~ 498 (1128)
++... ++.|.+|| .+++.+..+ -..+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+.
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence 66643 88999999 455554422 123456789999999998 7788888899999997787777664 4455688
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC--CeEEEEEEcCCCCeEEEeeeccCCCc-eEEEEeCCCCc
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEGT 575 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~~~~~~~-~i~~wd~~~~~ 575 (1128)
++++++ ++.++++...++.|++||.+ +.....+...+ ..+..++++++|+++++.. .++ .|.+||. +++
T Consensus 168 ~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~----~~~~~i~~~~~-~g~ 239 (286)
T 1q7f_A 168 GVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADN----HNNFNLTIFTQ-DGQ 239 (286)
T ss_dssp EEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEEC----SSSCEEEEECT-TSC
T ss_pred EEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeC----CCCEEEEEECC-CCC
Confidence 999866 56777777889999999974 34444444332 5789999999998777765 254 8999995 566
Q ss_pred eeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 576 IKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 576 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
.+..+..+.. ..+..++++++|+.+++ +.++.|++|+....
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6676665433 23668999999876655 67999999997654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=161.86 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=177.6
Q ss_pred CcEEEEEEeCCCCcEEEEe--------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~g--------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45778888 998665542 236789999998876421 2 4688999999
Q ss_pred CCCEEEEEeCC---C--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC------------------
Q 001190 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (1128)
Q Consensus 417 dg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~------------------ 473 (1128)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37888888876543 223334 999999999994 554442
Q ss_pred ---------CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC-------cEEEEecCCCCceeeecC
Q 001190 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (1128)
Q Consensus 474 ---------d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~ 536 (1128)
...|.+|| .+++.+..+.. . .+..++|++ +| +++++..++ ...+|.++ .+....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999 56655355554 3 778888876 66 777776542 45666665 333333333
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccC----CCceEEEEeCCCCceeeEeccccCCceeE-EEEeCCCCEEEEEECCCcEEE
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~i 611 (1128)
+ ..+..+ +|||++|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999988764221 135788898 5655444444433 6665 8899 88 8888899999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE-EEEEcc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~ 659 (1128)
| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 34688999999 677777777664 777765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-13 Score=149.44 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=178.1
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceee---cccccceeEEEEe-cCCCeEEEEEec-CCCeEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFA-YPNKLLCVVTCG-DDKLIK 478 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~fs-~d~~~~~l~s~s-~d~~i~ 478 (1128)
++-..+.+++++|+|+++++...++.|.+||.+ ++.+..+... .+|...+..+++. +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4444322110 2355678999995 6666 555553 388999
Q ss_pred EEecCCCeEEEecC-CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||.+|+.+..+.. +...+.++++.+ ++.++++...++.|.+||.+ +.....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99988888777643 445688999866 56777777788999999864 33333333 23446899999999986666
Q ss_pred eeeccCCCceEEEEeCCCCceeeEecccc-CCceeEEEEeCCCCEEEEEECCC-cEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
.. .++.|++||. +++.+..+.... ......++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~----~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DN----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EG----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred EC----CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 54 3778999997 456666665432 12577899999998888877776 9999995 566666665544333467
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+++++|+|+++++ +.++.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 8999999986666 6799999998754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-10 Score=142.75 Aligned_cols=535 Identities=8% Similarity=0.017 Sum_probs=317.2
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|.++...++|. +. .|+.+ .+..||..+++...- . ...... ...|.++...++|...+.
T Consensus 87 ~n~I~~i~~d~~g~-lW-igT~~-Gl~~yd~~~~~f~~~---~------------~~~~~~-~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VW-IGTRD-GLSRYDEEKDIFQNF---F------------YEKNGK-HLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EE-EEESS-CEEEEETTTTEEEEE---C------------CEETTE-ECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EE-EEeCC-chheeCCCCCeEEec---c------------ccccCC-CceEEEEEECCCCCEEEE
Confidence 35699999999998 33 34444 588999876653210 0 000000 011889999988876664
Q ss_pred EeCCCeEEEEEccCCCcceeceeeccc-ccc-eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe-cCCCCCeEE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYS 499 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-~~h~~~v~~ 499 (1128)
. . +.|..||..+++.... ..++ ... |.++...++|. +..++.++.|..|| .+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 4588999877543221 0111 123 88898888886 33455555688999 555443221 123456888
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
+.... ++ .|..++.++-+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 77643 44 45566655558888876543332211 1235799999999888665442 3 48899988
Q ss_pred CCceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----CCCCCcceEEEcCCCC
Q 001190 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (1128)
Q Consensus 573 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~ 642 (1128)
+++....... .....|.++...++|. |..|+.++.|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765433221 1223688888888775 566777788999987665433221111 0123578888888876
Q ss_pred EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
|.+|+.++-|..|+..++. ....... +.+.
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~~~~---------------~~~~-------------------------------- 399 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSYTLQ---------------EDES-------------------------------- 399 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEECCC---------------------------------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEEecC---------------CCCc--------------------------------
Confidence 4457777778888765431 1000000 0000
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (1128)
. . ......|.++...++|..|..++.++.+..|+......
T Consensus 400 ---------------------------~------~---~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---- 439 (795)
T 4a2l_A 400 ---------------------------A------R---GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---- 439 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----
T ss_pred ---------------------------c------c---CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----
Confidence 0 0 00234678888888887455566655677776432110
Q ss_pred ceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeC------CCCCee
Q 001190 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS------PPPAST 876 (1128)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~ 876 (1128)
+.+...... .....|.++...++|++.+... +.|.+||..+++....... ....|.
T Consensus 440 --------~~~~~~~~~---------l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 440 --------ENFNQRNSQ---------LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp --------EEECTTTSC---------CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred --------EEeecCCCC---------cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 011100000 1346789999999998777665 5688999888765432211 235689
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
++...+ ++.+.+. +. +-|..|+..+++. .+. .+...|.++...++|.+.++.. . -|..||..+++.
T Consensus 502 ~i~~d~-~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 502 TLFRDS-HKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEECT-TCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred EEEECC-CCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 999988 7776654 44 5688999877665 221 2345789999999998777554 3 488899877542
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCC-CCCe--EEEEEeeCCCEEEEEe
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL-SAPI--SCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h-~~~v--~~l~~s~dg~~l~t~~ 1026 (1128)
. ......+-....+.++..+++|.+.+++ ++.+..|+..+++. ..+...++. ...+ .++...+||++++ |+
T Consensus 575 ~---~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~ 648 (795)
T 4a2l_A 575 K---RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYF-GG 648 (795)
T ss_dssp E---EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEE-EE
T ss_pred E---EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEE-ec
Confidence 2 1222223233567888899999876665 57788888876543 223222211 2222 4667778888554 55
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
.+| +..++.+
T Consensus 649 ~~G-l~~~~p~ 658 (795)
T 4a2l_A 649 ING-ITTFRPE 658 (795)
T ss_dssp TTE-EEEECGG
T ss_pred CCc-eEEEcHH
Confidence 566 5556654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=151.95 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=185.2
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
..|.+++|+|++. .++..+.++.++.|. ++... .+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 3578889999987 445557788999992 33221 145566678999999999988888
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEe-cCCCeEEEec--CCCCCe
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd-~~g~~~~~~~--~h~~~v 497 (1128)
..++.|.+||.++++.... ...+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKRP---FVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEEE---EECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEEE---eeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 8899999999998764431 224667899999999998 66766656 6899999 5555432332 244578
Q ss_pred EEEeccCCCCccEEEEEec------cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.++++.+ +|.++++... .+.|..|+.+..... .+......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8999866 5666666543 244555554433322 22222335788999999997765542 3678999998
Q ss_pred CC-CceeeEe------ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC----CCCcceEEEcCC
Q 001190 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1128)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~sp~ 640 (1128)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3332211 1111125677999999998887778899999998 5666666654321 124789999999
Q ss_pred CCEEEEEEcCC
Q 001190 641 GNLLAVTTADN 651 (1128)
Q Consensus 641 ~~~l~~~~~dg 651 (1128)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88887766653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=167.89 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=174.8
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCC-----eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~- 476 (1128)
.+|...+..++|||||++||.+..++ .|++||+.+|+.+.. .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999886542 12 222377899999999 5666666655
Q ss_pred ---------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEec-----cCcEEEEecCC----
Q 001190 477 ---------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1128)
Q Consensus 477 ---------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~---- 527 (1128)
|++|+ .++. .+.....|...+..+.|++ ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 5554 2223333555678888866 6788887765 56899999976
Q ss_pred --CC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--eeEeccccC-CceeEEEEeCCCCEEE
Q 001190 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 528 --~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1128)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34445544444444 48899998888764333356899999988752 344444433 3577788887777777
Q ss_pred EEECCCc--EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 602 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.|+.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667787778776777654 346788899999887764433 4789999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=153.88 Aligned_cols=220 Identities=11% Similarity=0.129 Sum_probs=153.8
Q ss_pred CeeEEEeccCCCeEEEEe-C---Ce--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC------------
Q 001190 833 AVPCIALSKNDSYVMSAT-G---GK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------------ 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d------------ 894 (1128)
.+..++|||||++|+..+ + +. |.+|++.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 477899999999998876 2 33 8888998888766554433 99999999 88888877632
Q ss_pred ---------------CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcccce
Q 001190 895 ---------------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKS 952 (1128)
Q Consensus 895 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-------~i~iwd~~~~~~~~~ 952 (1128)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...||.+++++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5799999998887455554 3 88999999999 877776542 445555554432 22
Q ss_pred eEEeecCCCCCCCccEEEEcCCCCEEEEEe-c--------CeEEEEecCCcccccccccCCCCCCCeEE-EEEeeCCCEE
Q 001190 953 VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E--------TQLAIYDASKMERIRQWTPQDALSAPISC-AVYSCNSQLV 1022 (1128)
Q Consensus 953 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l 1022 (1128)
+... ..+. .++|||++++... + ..|.+|| +++....... +...+.. +.|+ || ++
T Consensus 213 l~~~-------~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 213 MFEK-------VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp EEEE-------ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EE
T ss_pred eccC-------ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EE
Confidence 2111 1122 3499999888754 2 3677887 4443332222 2567776 8999 98 88
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcE-EEEcCC
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV-KVMEPS 1092 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i-~iWd~~ 1092 (1128)
++++.++.++|| +.+++...... +...+.+++|+| .++++++.++.. .||.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~-------------~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK-------------GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC-------------SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec-------------CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 899999999999 88766543333 234567889988 678888888765 777765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-13 Score=150.15 Aligned_cols=274 Identities=13% Similarity=0.132 Sum_probs=184.6
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
..+.+++|++++..++..+.++.++.|.-. .|. .+.. +...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---------~~~~--~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PWL---------EISK--KGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EEE---------EEES--SCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-----------------eeE---------EEec--cCccccCcEECCCCC
Confidence 456778888888877777777788877211 000 0111 445678999999999
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC----CcEEEEecccceeeeccc--ccccC
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLK--GHQKR 917 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~~ 917 (1128)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|.+||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 877776 78899999998887665545667899999999 88888877766 689999998776542322 24457
Q ss_pred eeEEEEcCCCCEEEEEcC------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEE
Q 001190 918 ITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIY 989 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~ 989 (1128)
+.+++++|+|+++++... .+.|..||..+++..... ... ..+..++|+|||+.++++. ++.|.+|
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~------~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNI------SVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEE------SSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCC------CcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 899999999998887654 245555665554432211 111 3467899999999776654 6899999
Q ss_pred ecCC-ccccccc-----ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 990 DASK-MERIRQW-----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 990 d~~~-~~~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
+..+ +..+..+ ..... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..++...
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~------~~g~~~~ 281 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR------DEGHMLR 281 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG------GGTCSCB
T ss_pred EecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC------ccccccC
Confidence 9964 3332211 01111 246788999999998887777899999998 5666666542100 0011225
Q ss_pred eEEEEEecCCCCEEEEEECC
Q 001190 1064 PLVVAAHPLEPNQFAIGLTD 1083 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~d 1083 (1128)
+.+++|+| |++.|..++.+
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CCEEEECT-TSCEEEEEEEC
T ss_pred cceEEECC-CCCEEEEEeCc
Confidence 67899998 56566555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-14 Score=153.15 Aligned_cols=243 Identities=12% Similarity=0.054 Sum_probs=177.9
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.....+++. +++++++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 446677774 344444444 7899999999999988885 346788999988 776666655899999999999988766
Q ss_pred ccccc-----cCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c
Q 001190 911 LKGHQ-----KRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 983 (1128)
Q Consensus 911 l~~h~-----~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 983 (1128)
+.... .....+++ .+++.+++.. .++.|.+||+.+++....+... .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-------~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-------IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-------SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-------CCccceEEcCCCCEEEEECCC
Confidence 65433 14556777 4444445443 4889999999998766554332 3456789999999777754 3
Q ss_pred ----------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC
Q 001190 984 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053 (1128)
Q Consensus 984 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1053 (1128)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||+.+++...... ..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~~- 263 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----LE- 263 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----BC-
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----ec-
Confidence 689999999988776665432 346889999999999998765 89999999988631110 00
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEE----ECCCcEEEEcCCCCCCCccc
Q 001190 1054 SVLNGSQTVYPLVVAAHPLEPNQFAIG----LTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~p~~~~~l~s~----~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
.....+.+++++|++++++++. ..++.|.+||.. ++..|..
T Consensus 264 -----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 -----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp -----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred -----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 1134578899999778888887 788999999998 7765544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-13 Score=143.29 Aligned_cols=244 Identities=7% Similarity=-0.010 Sum_probs=175.4
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
...+.....+++|+|+|+.+++++..++.|..||..++ . .. +..+...+.+++++|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-------------------EESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-------------------EECCCCCcceeeECCCCc
Confidence 33466778999999999867888889999999999876 2 21 344667899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEE----ec-------------CCCeEEEEe
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CG-------------DDKLIKVWE 481 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s----~s-------------~d~~i~vWd 481 (1128)
++++...++.|.+||..+++.........+. ...+.+++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 8887777789999999887643321111111 23578899999998 6676 33 134666666
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-CCCc---eeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
..++ +..+..+......++|++ +++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|++.++.
T Consensus 160 ~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 4454 445556667788999966 66777777888999999987 3332 12233334456789999999866654
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEE-eCCCCEEEEEECCCcEEEEECCCCee
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.+ .+..++..+.++
T Consensus 236 -----~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 -----GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp -----TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred -----CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4679999986 777777776654 778889 5888889888875 455666666554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-09 Score=130.29 Aligned_cols=593 Identities=11% Similarity=0.081 Sum_probs=331.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|+++.-.++|... .|+.+| +..||-. .. +.+.... .+... ..-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~---~f-----~~~~~~~--~~~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGT---RF-----ITYYKEE--QSSSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSS---SE-----EEECCCS--SCSSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCC---ce-----EEEEcCC--CCCcc--ccccccccceEEEcCCCCEEEE
Confidence 3579999999999733 455565 5566632 11 1111100 00000 0002356999999998884555
Q ss_pred EeCCCeEEEEEccCCCcceecee-ecc---cccceeEEEEec--CCCeEEEEEecCCCeEEEEecCCCeEEEecC-----
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~----- 492 (1128)
|+.++.+..||..+++....... ... ....|.++.... +|. |..++.++.|..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775689999887653221000 000 123688888877 665 4445545568889933333333321
Q ss_pred -CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
....|.++.... ++ .|..++.++-+..||.......... ......|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 134577776532 43 5666776656888887654332211 11234689999988887666542 3
Q ss_pred eEEEEeCCCCceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-------cC-----
Q 001190 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1128)
-+.+||..+++....... .....|.++....+| .|..|+..+.|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 589999877654432211 122357777777665 46667776778999987765432211 00
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
-....|.++...++|. |.+|+.++-|..++..+.. +..... .+...
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~---------------~~~~~---------------- 355 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY---------------SPTQM---------------- 355 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------CC----------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc---------------Ccccc----------------
Confidence 1123577888887775 4556666667777654331 110000 00000
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
.........|.++...++|. |..++.++
T Consensus 356 ---------------------------------------------------~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 356 ---------------------------------------------------NESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp ---------------------------------------------------CSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred ---------------------------------------------------ccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 00000234577888888777 44455455
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT 866 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~ 866 (1128)
-+..|+...... +.+. ... . .....|.+++..++|.+.+...++.|..++..+++...
T Consensus 384 Gl~~~~~~~~~~------------~~~~-~~~-------~--~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNK-ENR-------E--LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEETTEEEE------------ECC---------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred cEEEEECCCCeE------------EEcc-CCC-------C--CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence 566665322110 0000 000 0 13467899999888887775546779999988776543
Q ss_pred Eee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccc-----ccCeeEEEEcCCCCEEEEEcCCCcE
Q 001190 867 TFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQL 939 (1128)
Q Consensus 867 ~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~~~Dg~i 939 (1128)
... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+....+| |
T Consensus 442 ~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred eccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 221 1345789999887 666554 555 56899998876543222111 36789999999998777544345 7
Q ss_pred EEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE-EEEecCCcccccccccCCC-CCCCeEEEEEee
Q 001190 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDASKMERIRQWTPQDA-LSAPISCAVYSC 1017 (1128)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~ 1017 (1128)
..||..+++... .....+-....+.++...++|.+.+++. +.+ ..||..+++.. .+....+ ....|.++...+
T Consensus 518 ~~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~ 592 (781)
T 3v9f_A 518 GIYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDK 592 (781)
T ss_dssp EEECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECS
T ss_pred EEEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCceEEEEEECC
Confidence 778877654211 1111222235678899999998777666 455 88888766432 2221111 135678898888
Q ss_pred CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1018 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+|++.++ +.+| |..|+..+++... +.....+. ...-...++...+ ++ .|..|+.+|- ..+++..
T Consensus 593 ~g~lW~~-t~~G-l~~~~~~~~~~~~-~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~Gl-~~f~p~~ 656 (781)
T 3v9f_A 593 NGNIWAS-TNTG-ISCYITSKKCFYT-YDHSNNIP------QGSFISGCVTKDH-NG-LIYFGSINGL-CFFNPDI 656 (781)
T ss_dssp SSCEEEE-CSSC-EEEEETTTTEEEE-ECGGGTCC------SSCEEEEEEEECT-TS-CEEEEETTEE-EEECSCC
T ss_pred CCCEEEE-cCCc-eEEEECCCCceEE-ecccCCcc------ccccccCceEECC-CC-EEEEECCCce-EEEChhh
Confidence 8986554 4444 8888988765533 32111111 1111123444444 44 4666777784 5567654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=166.99 Aligned_cols=246 Identities=9% Similarity=-0.066 Sum_probs=166.1
Q ss_pred cCCCcceEEEEEccCCCEEEEE-----eCCCeEEEEEccCCCcceeceeecccccce--eEEEEecCCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV--NDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v--~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+|...+..++|||||++||.+ +.+..|++||+.+|+.+.. .+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecC
Confidence 4677789999999999999944 4456899999999986511 122222 6899999999 677777776
Q ss_pred e-------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEeccC----cEEEEecCCCCceee
Q 001190 476 L-------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVD 533 (1128)
Q Consensus 476 ~-------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~ 533 (1128)
. |++|+ .++. ++.....|...+.++.|++ ||++|+.++.++ .|.+|+...+. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 6 99999 5554 3334445666788888876 667888777666 66666554433 333
Q ss_pred ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEE
Q 001190 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 534 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 610 (1128)
+..+...+....+ ++|. ++..+.....++.|.+||+.+++. ...+..+....+..++++ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444555555 6777 555543222468999999988753 333333324457778887 566777788898888
Q ss_pred EEECC-CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
+|.+. ++.....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87654 355455554331 335778889999987774433 4789999998764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=144.37 Aligned_cols=251 Identities=9% Similarity=0.042 Sum_probs=184.3
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cC
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KR 917 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 917 (1128)
..+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +++.+.++..+. ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 3457777777 8999999999999999998776 4789999999 899888 45788999998 899888887653 47
Q ss_pred eeEEEEcCCCCEEEEEcC-CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcc
Q 001190 918 ITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKME 995 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~ 995 (1128)
+.++.+.+||+++++.+. ++.|..+|. +|+.+..+...............+++.++|.++++.. ++.|.+||.. |+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 889999999999998877 777877775 5666555544321111113455678899999998874 8999999998 98
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.+..+... ..+.++.+.++|++++++..++.|..+|..+|+.+..+..... . ...-.++..++..+ +++
T Consensus 157 ~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 157 LLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp EEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-----SCCCSEEEEEEECT-TSC
T ss_pred EEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-----CccccccccceEcC-CCC
Confidence 88877653 3456778889999999888888999999999999998862110 0 01123467777777 688
Q ss_pred EEEEEECC--------CcEEEEcC-CCCCCCcccCCCCCCCc
Q 001190 1076 QFAIGLTD--------GSVKVMEP-SESEGKWGVSPPVDNGI 1108 (1128)
Q Consensus 1076 ~l~s~~~d--------g~i~iWd~-~~~~~~w~~~~p~~~~~ 1108 (1128)
++++.+.. +..+++++ .+++..|.-....+-|.
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~ 267 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGM 267 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccc
Confidence 88777421 13345555 46666676554444443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-13 Score=140.18 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=178.5
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC-cceEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~vwd~~~ 437 (1128)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998754 33343 4688999999999998 45778999999 7
Q ss_pred CCcceeceeeccc-ccceeEEEEecCCCeEEEEEecC-CCeEEEEecCCCeEEEecC------CCCCeEEEeccCCCCcc
Q 001190 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (1128)
Q Consensus 438 ~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd~~g~~~~~~~~------h~~~v~~~~~~~~~~~~ 509 (1128)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|.
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 876664 3333 34688999999999 6777766 7788888888988877642 1122333444 34778
Q ss_pred EEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC----
Q 001190 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1128)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---- 585 (1128)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++. .++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~----~~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACG----DAHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECB----TTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeC----CCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888777653 455677889999988876 366899999999999998874321
Q ss_pred -CceeEEEEeCCCCEEEEEECC--------CcEEEEEC-CCCeeeEEEecCCCCCCcceEE
Q 001190 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 586 -~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 125667788888887776421 13345554 4777777776655555555543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-13 Score=165.28 Aligned_cols=248 Identities=8% Similarity=-0.015 Sum_probs=169.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+.+.+| .|++||+.+|+.+.. .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4446889999999995444433333 899999999886531 011 1236789999999
Q ss_pred CEEEEEeCCCe----------------EEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecC-----CCe
Q 001190 419 NYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKL 476 (1128)
Q Consensus 419 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~ 476 (1128)
+.|+.++.++. |++|++.+++... .......|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988765 9999998876321 11122235666889999999995 443332 578
Q ss_pred EEEEe-cC------CC-eEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCc--eeeecCCCC--e
Q 001190 477 IKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPGH--W 540 (1128)
Q Consensus 477 i~vWd-~~------g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~--~~~~~~~~~--~ 540 (1128)
|.+|| .+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 54 43 456677776666553 544 45566555443 3699999877642 233444433 6
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCC
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDN 616 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~ 616 (1128)
+..+++++++.++++... ++...|++|++.+++.+..+..+. ..+..+.++++++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999876666666553 234467888987888777777763 3677888999987776543 457899999988
Q ss_pred Ce
Q 001190 617 VN 618 (1128)
Q Consensus 617 ~~ 618 (1128)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 77
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-11 Score=133.65 Aligned_cols=281 Identities=9% Similarity=0.080 Sum_probs=191.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...+.+++++++|...++...++.|..|+.. +......... ....+..++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 55789999999999977776667888888643 1111101111 3456889999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 919 (1128)
|.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++... ....+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 6889999986 3332 22223455789999999 8888888777899999998 554332 2233456789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++++.++|+++++...++.|..||. +++... .... . ....+..++++++|.+.++.. ++.|.+|+. +++...
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-T-PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-C-CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 9999999998888877889999998 554322 1111 1 124577899999999766653 788999998 655332
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+... .+...+.+++++++|+++++...++.|.+||. +++.. .+... .+...+.++++ + ++.+++
T Consensus 218 -~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~----------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 218 -FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ----------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp -EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS----------SSSCCEEEEEE-C-SSCEEE
T ss_pred -EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC----------CCCCccceEEe-c-CCCEEE
Confidence 2221 12577899999999996666657889999998 55533 32211 12234678888 6 577766
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
+.+ .+.+..+++.+.+
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 5677777776654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=169.62 Aligned_cols=249 Identities=6% Similarity=-0.074 Sum_probs=162.4
Q ss_pred CCCcEEEEEEeCCCCcEEEE----eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLV----GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~----gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+.+++|||||++++++ |+.+..|++||+.+|+.+... .+.+. ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 55579999999999955443 333468999999998864110 01111 12678999999
Q ss_pred CEEEEEeCCCe-------------EEEEEccCCCcc-eeceeecccccceeEEEEecCCCeEEEEEecCCC----eEEEE
Q 001190 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (1128)
Q Consensus 419 ~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~----~i~vW 480 (1128)
+.|+.++.|.. |++|++.++..- ........|...+..+.|+|||+. |+.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999987632 122223346678899999999995 44444444 67777
Q ss_pred ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc---eeeecCC-CCeEEEEEEcCCCCeE
Q 001190 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSRL 553 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~-~~~i~~~~~s~~g~~l 553 (1128)
|..+.....+..+...+....+ + +|.+++... .++.|.+||++++.. ...+..+ ...+..++++ ++.++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7333344555556655666555 2 444444443 258899999977653 2223322 4568888887 55555
Q ss_pred EEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCeee
Q 001190 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~ 620 (1128)
++... ++..++|.+. +++....+..+....+..++++++++.++... ..+.|++||+.+++..
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 55543 5555555443 35555666655344677788889988777543 3578999999988743
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=140.50 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=167.2
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 555667788999999998 7778888999999999986 33 3556777899999999999 67777777899999
Q ss_pred e-cCCCeEEEecCC----CCCeEEEeccCCCCccEEEEE----ec-------------cCcEEEEecCCCCceeeecCCC
Q 001190 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFST----AI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (1128)
Q Consensus 481 d-~~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~----~~-------------dg~i~~wd~~~~~~~~~~~~~~ 538 (1128)
| .+|+........ ...+..+++.+ +|.++++. +. .+.| |.++.......+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l--~~~~~~g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWV--FRLAPDGTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEE--EEECTTSCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEE--EEECCCCCEEEeecCC
Confidence 9 588754433221 12456788865 67777763 21 2344 4444434444445555
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.....++|+|+|+.+++.. .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6788999999999984443 47889999987 5554 3444 2233356679999999866655 889999998
Q ss_pred CCCeeeEEEecCCCCCCcceEEE-cCCCCEEEEEEcCCcEEEEEccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 777777765432 788999 58999999988763 33334433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-11 Score=132.40 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=193.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 55655557899999987 543210 0222456799999999999888
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~~~v~~~~ 501 (1128)
+...++.|..||.+ ++ +... .+......+.++++.++|. +.++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999986 33 2221 2223456789999999998 67777778899999975554432 233455688888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+ ++.+.++...++.|..||. ++..... .......+..++++++|+..++.. ..+.|.+||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 865 5667776667789999988 4433322 233345688999999998666543 3678999998 66644321
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.......+..++++++|+.+++...++.|.+||. +++. ..+....+...+.++++ +++.++++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212235788999999886665557889999998 4543 33333333346789999 8887766654 56677777654
Q ss_pred C
Q 001190 661 G 661 (1128)
Q Consensus 661 ~ 661 (1128)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=140.02 Aligned_cols=239 Identities=8% Similarity=0.014 Sum_probs=168.3
Q ss_pred CeeEEEeccCCCeEE-EEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVM-SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 68899999866543322223345688999999 788776666 88999999876544322
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~ 989 (1128)
.......+.+++++++|+++++...++.|.+|+..+...... ... ....+..++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-----PFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----CCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----ccc-cCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 223335688999999999888888888999997655432111 111 114578899999998666654 6899999
Q ss_pred ecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEE
Q 001190 990 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1069 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1128)
+............. ...+.+++++++|+++++...++.|.+|+........ .. ..+...+.++++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----------FTGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----------CCSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----------cCCCCCceeEEE
Confidence 98766543322221 3678999999999877777778899999987654432 11 122245688999
Q ss_pred ecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1070 HPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1070 ~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++ +++++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 58899999999999999988765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=143.99 Aligned_cols=268 Identities=11% Similarity=0.004 Sum_probs=183.4
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 444 (1128)
.+++|.+||.++++........ .--.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~-------------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR-------------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH-------------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh-------------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 4889999999998865321000 0001122346677774 455555666689999999999987664
Q ss_pred eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC-----CCeEEEeccCCCCccEEEEEe--c
Q 001190 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA--I 516 (1128)
Q Consensus 445 ~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~--~ 516 (1128)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ . ++ .++++. .
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~-~lyv~~~~~ 150 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GK-YVYVNCWSY 150 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TT-EEEEEECTT
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CC-EEEEEcCCC
Confidence 32 346688999999985 566665789999999 7787776665333 13455666 2 33 444444 4
Q ss_pred cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC------CceEEEEeCCCCceeeEeccccCCceeE
Q 001190 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
++.|.+||..+.+....+... .....++++|+|++++++....++ .+.|.++|..+++....+..........
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 899999999887766665543 345688999999877666421000 2789999999999887776443335778
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEE----EcCCcEEEEEcc
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANA 659 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~----~~dg~i~iw~~~ 659 (1128)
++++|++++++++.. .|++||..+++................++++| ++.++++. ..++.|.+|+..
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999999999988765 89999998887642111111123568899999 55555555 467899999987
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-11 Score=136.07 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=141.1
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.+++. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999988875 36799999 99998877 64322 24555645567777888999999999 876653
Q ss_pred ccc-----ccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCE
Q 001190 910 KLK-----GHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 910 ~l~-----~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~ 977 (1128)
... ....++ ....+.+++..++..+.++.+.+.|+.++............ .........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 221 111222 23456777665555557789999999765322111111110 001123344889999998
Q ss_pred EEEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEE
Q 001190 978 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 978 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~ 1044 (1128)
+.+.. .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+..
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 88753 25799999999999888865 45688999999999 777777 589999999999999988
Q ss_pred e
Q 001190 1045 I 1045 (1128)
Q Consensus 1045 ~ 1045 (1128)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-12 Score=138.88 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=143.4
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 909 (1128)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999999886432 1 223333 566777888899999998876 55432
Q ss_pred ccccc----ccCee-EEEEc-CCCCEEEEEcCCCcEEEEECCCCcccceeEEee------cCCCCCCCccEEEEcCCCCE
Q 001190 910 KLKGH----QKRIT-GLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 910 ~l~~h----~~~V~-~l~~s-~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~v~~v~~s~d~~~ 977 (1128)
....+ ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......... ..+........+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 11111 12222 24564 6776555 5568999999998765321111110 01111134556888999998
Q ss_pred EEEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEE
Q 001190 978 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 978 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~ 1044 (1128)
+++.. .+.|.++|+.+++.+..+.. ..++..++|++|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 88853 25799999999999998887 45788999999997 677654 589999999999999999
Q ss_pred eCC
Q 001190 1045 IAP 1047 (1128)
Q Consensus 1045 ~~~ 1047 (1128)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 983
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=137.77 Aligned_cols=240 Identities=7% Similarity=-0.062 Sum_probs=166.5
Q ss_pred cEEEEEEeCCCCcEEE-EeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla-~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++|+|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 556788999999765443210 12233567899999999966665
Q ss_pred eCCCeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEec
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~ 502 (1128)
. ++.|.+||..++.... +. .....+.++++.++|. ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987754321 21 2335789999999998 677777788999998 444433322233345678888
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
.+ ++.++++...++.|.+|+.+..............+..++++++|...++.. .++.|.+|+........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 65 567777777788999999876554433333335688999999996665543 36789999987654433 222
Q ss_pred ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
.....+..++++++|+.+++...++.|+++++...+.
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1213578899999998778888899999999876543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-12 Score=137.19 Aligned_cols=300 Identities=12% Similarity=0.068 Sum_probs=196.3
Q ss_pred CCCCccEEEEEec-----cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCC
Q 001190 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (1128)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~ 572 (1128)
+.++++.+++... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4567778888765 679999999988887777655555 4 9999999998876521 0125679999999
Q ss_pred CCceeeEecccc------CCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 573 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
+++.+.++.... ......+.|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCcee
Confidence 999988875422 123556899999999998874 68999999999999998875431 12232344566
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCC
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1128)
++.+.||.+.+.++.+......... .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~-~----------------------------------------------------- 218 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT-E----------------------------------------------------- 218 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC-C-----------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec-c-----------------------------------------------------
Confidence 6777788887777654211100000 0
Q ss_pred CCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCce
Q 001190 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1128)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~ 804 (1128)
+.
T Consensus 219 -----------------------------------------------------------------~~------------- 220 (386)
T 3sjl_D 219 -----------------------------------------------------------------VF------------- 220 (386)
T ss_dssp -----------------------------------------------------------------CC-------------
T ss_pred -----------------------------------------------------------------ee-------------
Confidence 00
Q ss_pred eeeeccceeccCCCccccccccCCCCCCCe-eEEEe-ccCCCeEEEEeCCeEEEEECCCce--EEEEee---------C-
Q 001190 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAV-PCIAL-SKNDSYVMSATGGKISLFNMMTFK--VMTTFM---------S- 870 (1128)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~---------~- 870 (1128)
+.. ..++ ....| .++|+++....+|+|.+.|..+.. ....+. +
T Consensus 221 ---------~~~--------------~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 221 ---------HPE--------------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp ---------SCT--------------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred ---------ccc--------------cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence 000 0000 01133 245555444446667777765443 222221 0
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC----------CCcEEEEecccceeeecccccccCeeEEEEcCCCC-EEEE-EcCCCc
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTE----------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVS-SGADAQ 938 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s-~~~Dg~ 938 (1128)
..+....+++++ +++.+..... .++|.+.|+.+++.+.++..- .++.+|++++|++ +|++ ...++.
T Consensus 278 ~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 278 RPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp EECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE
T ss_pred cCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe
Confidence 123455688888 6666655432 257999999999999887643 4688999999997 6655 456899
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
|.++|..+++.+..+... .....+.+++|
T Consensus 356 VsViD~~t~k~~~~i~~~-------~~p~~l~~s~d 384 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL-------GHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEECCC-------CSSCCEEEECC
T ss_pred EEEEECCCCcEEEEecCC-------CCCceeEECCc
Confidence 999999999876665444 44566777776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=159.04 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=160.9
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~- 476 (1128)
.+|...+..++|||||++||.+..+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~ 231 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPK 231 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC-
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCcc
Confidence 3455678999999999999987654 3699999999986542 122223468999999 8 4555555443
Q ss_pred -------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEeccC-----cEEEEecCCC--Cce
Q 001190 477 -------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSR 531 (1128)
Q Consensus 477 -------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~--~~~ 531 (1128)
|++|+ .++. .+.....+...+..+.|++ ||++|+..+.++ .|.+||++++ ...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 88999 5544 2222233434578888865 778888877654 8999999776 313
Q ss_pred eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
..+..+...+... ++|+|+.|+..+........|.+||+.++ +....+. +....+..+.+. ++..+++...|+..
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 3444444334444 34899999887754334678999999885 3333343 333356667776 45566777788887
Q ss_pred EEEECC-CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 610 KFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 610 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
++|.+. ++.....+..+. ...+..+.++|+++.++.... .++|++||+.++.
T Consensus 387 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 776543 455555554322 335788899999876664332 4789999998764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-08 Score=121.54 Aligned_cols=558 Identities=11% Similarity=0.028 Sum_probs=312.8
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeec-------ccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-------~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...|.+|.-.++|. |-.|+.+| +..||-.+ .+.+.... -....|.++.-.++|. .|..|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 45899999988885 55566777 66677433 22211100 0123588888888776 245566665789
Q ss_pred EEe-cCCCeEEEecC--------CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCeEEEE
Q 001190 479 VWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~ 544 (1128)
.|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.++
T Consensus 91 ~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 168 (781)
T 3v9f_A 91 AYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTA 168 (781)
T ss_dssp EEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEE
T ss_pred eECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEE
Confidence 999 55443 33311 1235778775321133 56666655667888876543322211 123468888
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
...++|.+.+... .+.|..||..+++...-.. ......|.++...+++... .|+.+ .|.+||..+++
T Consensus 169 ~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 169 TEAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTET 241 (781)
T ss_dssp EEEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTE
T ss_pred EECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCc
Confidence 8888887665432 4358889988765433211 1112357777777776644 45555 68999988776
Q ss_pred eeEEEecC-----CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 619 ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 619 ~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
........ -....|.++...++|. |.+|+..+-|.+++..+... .......+ ..+. .+..
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~f-------~~~~-~~~~---- 306 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF--LLPEQIRF-------EFIR-EGDN---- 306 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------C-------EEEC-BCSS----
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee--eeeecccc-------cccc-CCCC----
Confidence 54322111 1123588888877775 55566656677888755411 00000000 0000 0000
Q ss_pred ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
........|.++...
T Consensus 307 -----------------------------------------------------------------~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 307 -----------------------------------------------------------------NYSLSNASARYIFQD 321 (781)
T ss_dssp -----------------------------------------------------------------TTSBSSSCEEEEEEC
T ss_pred -----------------------------------------------------------------CCCCCCCeEEEEEEe
Confidence 000134568888888
Q ss_pred cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCe
Q 001190 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1128)
.+|. |-.++.++-|..++.....+ +.+........... -....|.+++..++|.+.+...++.
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~~~~~~~----l~~~~v~~i~~d~~g~lWigt~~~G 384 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPTF------------HTWSYSPTQMNESS----LSNKVVSSVCDDGQGKLWIGTDGGG 384 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCSC------------EEEC----CCCSSC----CSSSCEEEEEECTTSCEEEEEBSSC
T ss_pred CCCC-EEEEecCCeEEEeCCCCCcc------------eeeccCccccccCC----CCCcceEEEEEcCCCCEEEEeCCCc
Confidence 8887 44555555566665332111 01110000000000 1345699999988888776655677
Q ss_pred EEEEECCCceEEEEe---eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc--ccccCeeEEEEcCCCC
Q 001190 854 ISLFNMMTFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLN 928 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~ 928 (1128)
|..|+..+++...-. ......|.++...+ ++.+. .|+.++-|..++..+++...... .....|.++...++|.
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 999998765432211 12345688999887 66655 47777779999988776443221 2346799999988887
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
+.+... +-|..||..+++........ ........+.++...++|.+.+.+.++.+..|+..+++.............
T Consensus 463 lwigt~--~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~ 539 (781)
T 3v9f_A 463 IWIGTH--AGVFVIDLASKKVIHHYDTS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSN 539 (781)
T ss_dssp EEEEET--TEEEEEESSSSSCCEEECTT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCS
T ss_pred EEEEEC--CceEEEeCCCCeEEecccCc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCC
Confidence 666443 45889998876532211100 001112568889999999887776667788899876543221111111146
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i 1088 (1128)
.|.++...++|++.+.. .+|.|..||..+++... +.....++ . ..+.++...+ ++++.++ +.+| |..
T Consensus 540 ~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~-~~~~~gl~------~--~~i~~i~~d~-~g~lW~~-t~~G-l~~ 606 (781)
T 3v9f_A 540 TINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV-FQRKEGLP------N--THIRAISEDK-NGNIWAS-TNTG-ISC 606 (781)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE-ECGGGTCS------C--CCCCEEEECS-SSCEEEE-CSSC-EEE
T ss_pred eeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE-ccccCCCC------C--ceEEEEEECC-CCCEEEE-cCCc-eEE
Confidence 78999998899865544 46665999988876433 22111111 1 1235666665 4555554 4445 555
Q ss_pred EcCCCC
Q 001190 1089 MEPSES 1094 (1128)
Q Consensus 1089 Wd~~~~ 1094 (1128)
++..+.
T Consensus 607 ~~~~~~ 612 (781)
T 3v9f_A 607 YITSKK 612 (781)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 666543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-10 Score=125.33 Aligned_cols=279 Identities=10% Similarity=-0.041 Sum_probs=190.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....+.++++.++|+ +.++...++.|.+||.. ++... + .+..+...+.++++.++|.+.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456799999999998 66665568899999987 55321 0 0223446789999999999888
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~~~v~~~~ 501 (1128)
+...++.|..||.. ++.. .. .+......+.++++.++|. +.++...++.|..||..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778889999988 5432 11 2333446789999999998 67777768899999954665532 333455688888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+ ++++.++...++.|..|+. .+.... ........+..++++++|+..++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 865 5666666666788999987 333322 2223345789999999997666543 3667999998 55544332
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.......+..++++++++..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2112235778999999886666556789999998 45433 333332334678999999998666554 4 6666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-10 Score=128.07 Aligned_cols=277 Identities=7% Similarity=-0.054 Sum_probs=179.0
Q ss_pred EEeCCCCcEEEEee-ccC---eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-
Q 001190 351 DFHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1128)
Q Consensus 351 ~fspdg~~lla~gs-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 425 (1128)
...|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577774444432 222 889999999886532 2212223 899999999999886
Q ss_pred ---------CCCeEEEEEccCCCcceeceee-ccc---ccceeEEEEecCCCeEEEEEec--CCCeEEEEecCCCeEEE-
Q 001190 426 ---------TKHLIQLYSYAGSNDLRQHSQI-DAH---VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFN- 489 (1128)
Q Consensus 426 ---------~d~~i~vwd~~~~~~~~~~~~~-~~h---~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd~~g~~~~~- 489 (1128)
.++.|.+||..+.+.+..+..- ..+ ...-..++|+|||++ |+.+. .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD~t~~~~~~~ 163 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEECCCCEEeEE
Confidence 3678999999987766543211 010 123458999999994 55544 25789999944455555
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCe-EEEEEEcCCCCeEEEeeeccCCC
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~-i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
+. ..+. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++.... .
T Consensus 164 i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~ 233 (373)
T 2mad_H 164 LS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----S 233 (373)
T ss_pred cC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----C
Confidence 43 2222 23333332 45677788999999998 655442221 11112 233456677665554442 5
Q ss_pred ceEEEEeCCCCc--eeeEeccc---------cCCceeEEEEeCCCCEEEEEEC----------CCcEEEEECCCCeeeEE
Q 001190 564 SFLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 564 ~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~ 622 (1128)
+.+.+.|+.++. .+..+... .......+.+++++++++++.. ++.|.++|..+++.+..
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 689999987553 22222211 0112334788999998888653 35799999999999998
Q ss_pred EecCCCCCCcceEEEcCCCC-EEEEEE-cCCcEEEEEcccCcc
Q 001190 623 TDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLR 663 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~ 663 (1128)
+.... ....++|+|||+ +++++. .++.|.++|..+++.
T Consensus 314 i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 314 ISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 87543 468999999999 777776 489999999988743
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=136.52 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=143.7
Q ss_pred eEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee--
Q 001190 835 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-- 909 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-- 909 (1128)
..++|+|||++++++. ++.|.+.|+.+++.+.++.... +....|.+.+.+++.+.||.+.+.++.+++...
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578999999988875 4679999999999998886422 133344244666677778888888886665442
Q ss_pred --cccccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC------CCCCCccEEEEcCCCCEEEE
Q 001190 910 --KLKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG------KTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 910 --~l~~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~s~d~~~l~~ 980 (1128)
.+.....++ ..+.|+++++.++..+..+.|.+.|+.++............. ........++++||++++++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 222222222 245689998887777788999999997654221111111000 00122334799999988877
Q ss_pred Ee-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEEeC
Q 001190 981 VH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 981 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.. .+.|.++|..+.+.+..+.. ......++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 53 24799999999999998876 34688999999999 888888 59999999999999999873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-11 Score=131.41 Aligned_cols=238 Identities=13% Similarity=0.138 Sum_probs=164.8
Q ss_pred CCeeEEEeccCCCeEEE-------E-eCCeEEEEECCCceEEEEee----CCCCCeeEEEEcCCC-CCEEEEEeCCCcEE
Q 001190 832 EAVPCIALSKNDSYVMS-------A-TGGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGTEDSTIH 898 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~-------~-~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~d-~~~lasg~~dg~v~ 898 (1128)
....+++|+++|+++++ . .++.|.+||..+++...... ++...+.++++++ + ++++++.. ++.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 44678999999998888 3 47889999988887643222 2446789999999 6 76665544 44799
Q ss_pred EEecccceeeec-ccc----cccCeeEEEEcCCCCEEEEEcCC---------------CcEEEEECCCCcccceeEEeec
Q 001190 899 IYNVRVDEVKSK-LKG----HQKRITGLAFSTSLNILVSSGAD---------------AQLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 899 iwd~~~~~~~~~-l~~----h~~~V~~l~~s~d~~~l~s~~~D---------------g~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..||.. ++..... ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~- 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF- 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC-
Confidence 99988 765433 221 22458899999999988877655 456667665 4432211 111
Q ss_pred CCCCCCCccEEEEc----CCCCEEEEEe--cCeEEEEecC-Ccccc--cccccCCCCC-CCeEEEEEeeCCCEEEEEecC
Q 001190 959 AGKTPTGDTRVQFN----ADQVRMLVVH--ETQLAIYDAS-KMERI--RQWTPQDALS-APISCAVYSCNSQLVFATFCD 1028 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s----~d~~~l~~~~--d~~i~v~d~~-~~~~~--~~~~~~~~h~-~~v~~l~~s~dg~~l~t~~~d 1028 (1128)
.....++++ ++++.+.++. ++.|.+|+.. ++... ..+.....+. ..+..++++++|+++++...+
T Consensus 172 -----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 -----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 345789999 9998766653 6899999986 34311 1111111112 567899999999988887788
Q ss_pred CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCcEEEEcCCC
Q 001190 1029 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~~dg~i~iWd~~~ 1093 (1128)
+.|.+||..+++.+..+. .+...+.+++|+| +++ ++++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~------------~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIR------------CPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEE------------CSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEe------------CCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998887766554 1224578899988 577 566666778999999875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-10 Score=122.66 Aligned_cols=278 Identities=8% Similarity=0.031 Sum_probs=188.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....+.++++.++|...++...++.|.+|+.. . ......+.. ....+..++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECCC--CCCcceeEEECCC
Confidence 45678999999999977777678888888643 1 111101111 3356889999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 919 (1128)
|+++++.. ++.|..||.. ++... .+......+.++++++ +++++++...++.|..|+.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99887766 6889999988 55432 2222346789999999 88888877778899999987 55432 2333446789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++++.++|+++++...++.|..||. +++... ... . .....+..++++++|.+.++.. .+.|.+|+. ++....
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-P-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-S-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-C-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 9999999998887777888999998 444321 111 1 1125678999999998777654 568999998 444332
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
. ... .+...+.+++++++|++.++...++.|.+||. +++......+ .....+.++++.+ ++++++
T Consensus 223 ~-~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-----------~~~~~~~~i~~~~-~g~l~v 287 (300)
T 2qc5_A 223 Y-DIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQ-----------TENAEPHGITFGK-DGSVWF 287 (300)
T ss_dssp E-ECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECC-----------STTCCCCCEEECT-TSCEEE
T ss_pred E-ECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECC-----------ccCCccceeEeCC-CCCEEE
Confidence 2 111 12567899999999996666666789999998 5654432221 1122356788888 577666
Q ss_pred EEECCCcEEEEcCC
Q 001190 1079 IGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~ 1092 (1128)
+.. . .|..+++.
T Consensus 288 ~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 288 ALK-C-KIGKLNLN 299 (300)
T ss_dssp ECS-S-EEEEEEEC
T ss_pred Ecc-C-ceEEeCCC
Confidence 655 4 67666653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=152.98 Aligned_cols=247 Identities=9% Similarity=-0.034 Sum_probs=155.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeecc----CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+.+.+ ..|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 334788999999999554443332 3699999999886531 111222467899999
Q ss_pred CEEEEEeCCCe--------------EEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecC-----CCeEE
Q 001190 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (1128)
Q Consensus 419 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~i~ 478 (1128)
+.|+.++.++. |++|++.++.... .......|...+..+.|+|||+. |+..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998887654 8899998765321 11122234446889999999995 444443 34899
Q ss_pred EEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCC-c-eeeecCCCCeEEEEEEcCC
Q 001190 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 479 vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~-~-~~~~~~~~~~i~~~~~s~~ 549 (1128)
+|| .++ +....+..+...+....+ + +|+.|+..+.+ +.|.+||++... . ...+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 555 314556555555554432 3 55677766653 459999987742 2 33334444456677776 4
Q ss_pred CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCee
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 619 (1128)
+.++++... ++...|.+++. +++....+..+....+..+.++++++.++... ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 444555443 22334445554 45556666654344677888999987666432 357899999998873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-10 Score=127.93 Aligned_cols=248 Identities=11% Similarity=0.066 Sum_probs=165.0
Q ss_pred CCCcEEEEEEeCCCCcEEEE-------eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~-------gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.-....+++|+++|+ ++++ ++.++.|.+||..+++.... . .....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEEEe
Confidence 344678999999998 6676 56789999999887765321 0 00012345679999999
Q ss_pred cC-CCEEEEEeCCCeEEEEEccCCCccee-ceeecc-cccceeEEEEecCCCeEEEEEecCC---------------CeE
Q 001190 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1128)
Q Consensus 416 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d---------------~~i 477 (1128)
++ |+++++. ..+.|.+||.+ ++.... .....+ +...+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 7655544 44479999988 654321 111111 234589999999998 55655544 567
Q ss_pred EEEecCCCeEEEecCCCCCeEEEecc--CCCCccEEEEE-eccCcEEEEecCC-CCc-----eeeecCCC-CeEEEEEEc
Q 001190 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYDT-MGS-----RVDYDAPG-HWCTTMLYS 547 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~~wd~~~-~~~-----~~~~~~~~-~~i~~~~~s 547 (1128)
..||..++.... ..+......++++ .+++++.++.+ ..++.|.+|+++. +.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 778844654433 2333456778886 11366555544 5678999999762 221 11222222 568889999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 616 (1128)
++|+..++.. .++.|.+||..+++.+..+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 235 ~~G~l~v~~~----~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEc----CCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9998777764 367899999987887777765543 688899999999666554 568899999764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-11 Score=131.63 Aligned_cols=273 Identities=8% Similarity=0.059 Sum_probs=183.5
Q ss_pred CCCCcEEEEeecc----CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe----
Q 001190 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1128)
Q Consensus 354 pdg~~lla~gs~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 425 (1128)
|++++++++...+ +.|.+.|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666555555444 7999999999988753 1111234 799999999998876
Q ss_pred ------CCCeEEEEEccCCCcceeceeec--c---cccceeEEEEecCCCeEEEEEec--CCCeEEEEe-cCCCeEEEec
Q 001190 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 426 ------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd-~~g~~~~~~~ 491 (1128)
.++.|.++|..+++.+..+. +. . ....-..++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988776542 21 0 1234567899999994 55444 368999999 8888887776
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeE-EEEEEcCCCCeEEEeeeccCCCceE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC-TTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i-~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
--.. ....+.+. ..+++.+.||.+.+.+...++.... +.....++ ..+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4566677788887777744333311 11111121 23567899888777653 6789
Q ss_pred EEEeCCCCcee--eEeccc---------cCCceeEEEEeCCCCEEEEEEC----------CCcEEEEECCCCeeeEEEec
Q 001190 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 567 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+.|....... ..+... .......++++++++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0011223789999998887642 35799999999999998875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEE-cCCcEEEEEcccCc
Q 001190 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGL 662 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~ 662 (1128)
.. ....++|+||++ ++++.. .++.|.++|+.+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 43 368999999999 888888 58999999999884
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-11 Score=130.06 Aligned_cols=240 Identities=9% Similarity=0.057 Sum_probs=162.4
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCce-----------EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
..+..+++++...++++|+...+.+|++.+.. ..... .+.. |+.++| |+.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999997788889876443 11222 3556 999999 67888888 88999999
Q ss_pred ecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 901 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 901 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
|+.+.........|..++.++.+.+.. ++++..||.|.+||++++.... .. ..+++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~-------~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA-------QNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE-------ESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc-------CCceEEEEcCCc-eEEE
Confidence 998766555666778889888877653 8889999999999999876532 21 578999999999 4444
Q ss_pred EecCeEEEEecCCccc--cccccc------CCCCCCCeEEEEEeeCCCEEEEEec-----------CCcEEEEecCCCce
Q 001190 981 VHETQLAIYDASKMER--IRQWTP------QDALSAPISCAVYSCNSQLVFATFC-----------DGNIGVFDADTLRL 1041 (1128)
Q Consensus 981 ~~d~~i~v~d~~~~~~--~~~~~~------~~~h~~~v~~l~~s~dg~~l~t~~~-----------dg~i~vwd~~~~~~ 1041 (1128)
..||.+++|+...+.. ...+.. +..|...|.++.|.++++++++=.. +-.++|-..+.+..
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~ 258 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSA 258 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCc
Confidence 5699999998887664 334421 1134788999999999999886221 11466666434433
Q ss_pred EEEeCCCCCCCCcccCCCCccceEE-EEEecCCCCEEEEEECCC-cEEEEc
Q 001190 1042 RCYIAPSTYLSPSVLNGSQTVYPLV-VAAHPLEPNQFAIGLTDG-SVKVME 1090 (1128)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~l~s~~~dg-~i~iWd 1090 (1128)
...-......+.+.+.+.+.-+... -.|.|+..+++++++.-. .|-+++
T Consensus 259 ~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~ 309 (388)
T 1xip_A 259 SFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWD 309 (388)
T ss_dssp EEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred eeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEec
Confidence 2211111111111111233333333 357775556666665544 477775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-10 Score=121.33 Aligned_cols=228 Identities=9% Similarity=0.014 Sum_probs=152.7
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
-..+..|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 356889999766655554 688999999887653 332 456799999999 8886654 3 67899999988765322
Q ss_pred ccc----cccCeeEEEEcCCCCEEEEEcC---------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 911 LKG----HQKRITGLAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 911 l~~----h~~~V~~l~~s~d~~~l~s~~~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
... ....+..++++|+|+++++... ...-.||.+............. .....++|+||++.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg~~ 162 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDHKI 162 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTSCE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCCCE
Confidence 211 2245789999999997776432 2334666665432222211111 34578999999998
Q ss_pred EEEEe--cCeEEEEec--CCcccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCC
Q 001190 978 MLVVH--ETQLAIYDA--SKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051 (1128)
Q Consensus 978 l~~~~--d~~i~v~d~--~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1051 (1128)
|++++ ++.|.+|++ .++... ..+.....+......++++++|++.++....+.|.+||.++|+.+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~----- 237 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK----- 237 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-----
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-----
Confidence 87764 688999987 344321 1111111114567899999999977777778889999999999988887
Q ss_pred CCcccCCCCccceEEEEEe-cCCCCEEEEEECC
Q 001190 1052 SPSVLNGSQTVYPLVVAAH-PLEPNQFAIGLTD 1083 (1128)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~-p~~~~~l~s~~~d 1083 (1128)
.....+++++|. |+...++++...+
T Consensus 238 -------~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 238 -------LPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -------CSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -------CCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 222457899998 6433445555543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=123.88 Aligned_cols=253 Identities=10% Similarity=0.013 Sum_probs=166.4
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEecccceee
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVK 908 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 908 (1128)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999777665 688999999988776655542 3334 99999 888888887766 7999988766543
Q ss_pred ecc----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC-ccEEEEcCCCCEEEEEe-
Q 001190 909 SKL----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 909 ~~l----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~- 982 (1128)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++.... +......+..... ...++|+|++..|.+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 2244667899999955555557778899999998765321 1000011111112 13999999655555554
Q ss_pred -cCeEEEEecCCcccccccccCC------------CCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQD------------ALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~------------~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
.+.|+.|+.... +..+.... ........++++++|+++++-. .++.|++|++.+|+........
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 678999987533 22221110 0124578999999999777766 7899999998888764433310
Q ss_pred --CCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1049 --TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1049 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
.......-....-..+..+++++ ++.++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 00000000011234688999999 4888899888999988765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-10 Score=125.48 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=159.4
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
...+.++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4689999999998 777777789999999987765421 112 22233 9999999999998
Q ss_pred eCCC--eEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE----ecCCCCC
Q 001190 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----FEGHEAP 496 (1128)
Q Consensus 425 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~----~~~h~~~ 496 (1128)
..++ .|.+|+..++........+.. +...+.+++++|++. .|+.+..++.|+.|| ..+..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788999887654332211122 456788999999555 244466688999999 54543222 2222222
Q ss_pred e--EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---------------CCeEEEEEEcCCCCeEEEeeec
Q 001190 497 V--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---------------GHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 497 v--~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
- ..++|++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 38888764 3456666677889999987643 2222222 13478999999999665543
Q ss_pred cCCCceEEEEeCCCCceeeEecccc--------------CCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.+++.|+.|+..++.. .++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0377899999877764 3333320 124667899998766666667778887765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-10 Score=127.42 Aligned_cols=270 Identities=12% Similarity=0.026 Sum_probs=173.1
Q ss_pred CcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++|+|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 666643 2343677777655432 111111 01234667899999999998766
Q ss_pred EEeC-----CCeEEEEEccCCCcceeceeec----ccccceeEEEEecCCCeEEEEEec---CCCeEEEEe-cCCCeEEE
Q 001190 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 423 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~v~~l~fs~d~~~~~l~s~s---~d~~i~vWd-~~g~~~~~ 489 (1128)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999998755432 121 23345789999987653 455555 678999999 77877776
Q ss_pred ecCCCCCeE-EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 490 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.+|..... ...+.. +|..+.+.+.++.++.|.. .+..++++|||+.|+++.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 766532111 022222 4566777777888766631 3678999999998887764 2335555
Q ss_pred EeCC---CCc-----eee--EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||.++++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 001 1112222 4556899999998888888999999998667654333321 22356889999
Q ss_pred CCCCEEEEEEcCC
Q 001190 639 KEGNLLAVTTADN 651 (1128)
Q Consensus 639 p~~~~l~~~~~dg 651 (1128)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777766443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=128.37 Aligned_cols=273 Identities=8% Similarity=0.003 Sum_probs=178.2
Q ss_pred ccEEEEEEecCcceEEEeec--cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.....++++++|+.+++... ++.++||.+.. ++..... -|.. .. ..+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~~--------~~--~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQSG--------NA--IITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCCS--------SC--CCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Cccc--------Cc--ccceeEeeEEEEcCC
Confidence 46789999999998877542 34467776641 1111000 0000 00 125567899999999
Q ss_pred CCeEEEEe------CCeEEEEECCCceEEEEeeCC------CCCeeEEEEcCCCCCEEEEEe---CCCcEEEEeccccee
Q 001190 843 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 843 g~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~ 907 (1128)
|+++++.. ++.|.+||+.+++.+..+..+ ...+..+++++.++.++++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98776553 368999999999987776532 234689999984455666665 688999999999887
Q ss_pred eecccccccCee-EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 908 KSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 908 ~~~l~~h~~~V~-~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
...+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++|+|||+.|+++. ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCC
Confidence 777766532211 144566787777788888876663 2246799999999888875 33
Q ss_pred eEEEEecCC---cc-----cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCccc
Q 001190 985 QLAIYDASK---ME-----RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1056 (1128)
Q Consensus 985 ~i~v~d~~~---~~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1056 (1128)
.+..++... +. ....+.. ..+......++++++|+++++...++.|.+||.++|+......
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---------- 286 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---------- 286 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----------
Confidence 454444321 10 0111110 0113355689999999988888889999999986776543332
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 001190 1057 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1057 ~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
..+..++.+++|.+ ++.++++.+..+.+-+|
T Consensus 287 -~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 287 -DEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -CGGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred -CCceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 11234678999998 58888888766555434
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=137.91 Aligned_cols=245 Identities=11% Similarity=0.099 Sum_probs=161.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEe-----CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~-- 475 (1128)
.+|...+..++|||||++||.+. .+..|++||+++|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999999643 235799999999986542 11 11124678999 999 456555553
Q ss_pred -----------eEEEEe-cCCC----eEEEecC-CCCCeEEEeccCCCCccEEEEEec----cCcEEEEecCCCC-ceee
Q 001190 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1128)
Q Consensus 476 -----------~i~vWd-~~g~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~-~~~~ 533 (1128)
.|++|+ .++. ++..... |...+.++.+++ ||++|+.... ++.|.+||++... ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4433 2333333 444567788866 6677755433 2589999987764 3344
Q ss_pred ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--eeEeccccCCceeEEEEeCCCCEEEEEECCC---c
Q 001190 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---Q 608 (1128)
Q Consensus 534 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~ 608 (1128)
+..+....... ++++|..++..+......+.|..+|+.++.. .+.+..+....+ .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6788887776654322357899999988754 345555554333 8899999888876443 6
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC----CcEEEEEcccCc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIGL 662 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~~ 662 (1128)
|++|++.++. ...+.... ...+..+.+++++..++....+ +.+..||+.++.
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 8999987554 34443322 2346677788888877766555 789999987763
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-10 Score=137.78 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=162.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEe----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~g----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+. +....|+|||+.+|+.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 455789999999999554433 3335899999999986431 01 11113578999 99
Q ss_pred CEEEEEeCCC-------------eEEEEEccCCCcce-eceeecc-cccceeEEEEecCCCeEEEEEec--CCCeEEEEe
Q 001190 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE 481 (1128)
Q Consensus 419 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd 481 (1128)
+.|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+.+++.+.. .+..|.+||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998774 39999998765321 1112233 45567889999999963333222 235899999
Q ss_pred -cCCC-eEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEE
Q 001190 482 -LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 482 -~~g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
.++. ....+..+....... +.+. ++.+++....+ +.|..+++..... ...+..+...+. .|+++++.|+
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 4443 456666666655554 3332 23444554443 6788899887654 234444544444 8899999988
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC----CcEEEEECCCCeee
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 620 (1128)
.... .++...|++|++..+. ...+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 342 ~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 342 AEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7764 2234579999987544 444443333356666777888777766544 88999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-09 Score=113.97 Aligned_cols=229 Identities=11% Similarity=0.093 Sum_probs=155.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+..-..+..|+|++..++++...++.|..||..+++... ..+...+.+++++|+|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEE
Confidence 344567999999766688888888999999998776421 11346799999999999655
Q ss_pred EEeCCCeEEEEEccCCCcceeceeec-c-cccceeEEEEecCCCeEEEEEe-cC----------CCeEEEEecCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFN 489 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~fs~d~~~~~l~s~-s~----------d~~i~vWd~~g~~~~~ 489 (1128)
+ . ++.|.+||.++++... +.... + ....+++++++|+|+ +.++. .. .+.|..+|..++...
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~- 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK- 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-
Confidence 4 3 5679999998875432 11111 1 234588999999998 44443 21 234444444454433
Q ss_pred ecCCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecC--CCCce--e---eecCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR--V---DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~--~~~~~--~---~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... . .+......+..++++++|++.++..
T Consensus 144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~---- 217 (297)
T 3g4e_A 144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY---- 217 (297)
T ss_dssp EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----
T ss_pred EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----
Confidence 333344567889976 55655 555667899999984 33211 1 1222235678999999997666654
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEEC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 605 (1128)
+.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 218 ~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 218 NGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 367899999999999888887654 68889998 88888777664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-09 Score=118.26 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=157.6
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.........+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++|+|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEE
Confidence 355568899999999978888888999999987 444211 33356678999999999977
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEE----ecC-------------CCeEEEEe-c
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-L 482 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s----~s~-------------d~~i~vWd-~ 482 (1128)
++...++.|.+|+.+ ++.........+. ...++++++.++|. +.+| |.. .+.|..|| .
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 666566889999986 5432211111111 23578899999998 6665 332 25688888 5
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCc---eeeecCCCCeEEEEEEcCCCCeE
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
+|+..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 66654433 344567889866 66777777655 7899999875431 11111223345678899999954
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999998 577777776554 477899999998888888764 43333
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=125.62 Aligned_cols=197 Identities=10% Similarity=0.018 Sum_probs=129.2
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEE--EECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc----
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISL--FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---- 904 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~---- 904 (1128)
...++|+|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34578899999888875 356888 88877 444432111 223343455666777899988889887
Q ss_pred -ceeee----cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeec------CCCCCCCccEEEEcC
Q 001190 905 -DEVKS----KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNA 973 (1128)
Q Consensus 905 -~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~v~~v~~s~ 973 (1128)
++... .+.-...+. . ++++..++..+. +.|.+.|+.++........... .+..+.....++++|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 55432 122222333 3 666666666666 8999999876432111111100 000012223378999
Q ss_pred CCCEEEEE-e-c--------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE-EEe-cCCcEEEEecCCCce
Q 001190 974 DQVRMLVV-H-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF-ATF-CDGNIGVFDADTLRL 1041 (1128)
Q Consensus 974 d~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-t~~-~dg~i~vwd~~~~~~ 1041 (1128)
|+++++++ . . +.+.++|+.+.+.+..+.. ......++|++||++++ +.. .++.|.|+|+.+++.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 99988875 3 2 3677999999999988876 34688999999998544 555 489999999999999
Q ss_pred EEEeC
Q 001190 1042 RCYIA 1046 (1128)
Q Consensus 1042 ~~~~~ 1046 (1128)
+.++.
T Consensus 350 v~~I~ 354 (368)
T 1mda_H 350 QSSVE 354 (368)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99887
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-05 Score=93.80 Aligned_cols=528 Identities=9% Similarity=0.006 Sum_probs=289.4
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC-CCCCeE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~-h~~~v~ 498 (1128)
+|+.+ ..+.|+..++++....... .+ ..-..+..++|.+++.. +.++-..++.|..++.+|.....+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~-~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAI-PL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEEC-CC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEE-Ec-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44443 4567899999875432211 12 22346889999997774 45566678899999955544333322 223466
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
.+++.+. .+.+.++-...+.|.+.+++.................+++.|....|+..-. .....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3455566666788999998765444444344556899999996666665432 125678888876554433
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
.... ......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 22567799999888888776 567899999876544 233221 12345777754 33444444477888888
Q ss_pred cccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCC
Q 001190 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1128)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 737 (1128)
..++... ..+.... .....+.+....+.- ..+ .+.
T Consensus 235 k~tg~~~-~~l~~~~-----~~p~~i~v~~~~~q~----~~n-----------~C~------------------------ 269 (628)
T 4a0p_A 235 KTSGQNR-TIIQGHL-----DYVMDILVFHSSRQS----GWN-----------ECA------------------------ 269 (628)
T ss_dssp TTTCCSC-EEEECSC-----CSCCEEEEECGGGSC----CCC-----------TTT------------------------
T ss_pred CCCCCce-EEEecCC-----CCcceeeeeeecccc----cce-----------Eec------------------------
Confidence 6665321 1111110 011122111111000 000 000
Q ss_pred CCcceeEEEeeCCceeEEEecCCCCCcccEEEEEE-ecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccC
Q 001190 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY-TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1128)
Q Consensus 738 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1128)
. ..+....+++ .|.+.+- +.+..|...
T Consensus 270 --~----------------------~ng~C~~~C~~~~~~~~~-C~C~~g~~l--------------------------- 297 (628)
T 4a0p_A 270 --S----------------------SNGHCSHLCLAVPVGGFV-CGCPAHYSL--------------------------- 297 (628)
T ss_dssp --T----------------------TGGGCSSEEEEETTTEEE-EECSTTCEE---------------------------
T ss_pred --c----------------------CCCCcchhhhcCCCCCee-EEcCCCcEe---------------------------
Confidence 0 0000001111 1212211 112221100
Q ss_pred CCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE-EEEeeC-CCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV-MTTFMS-PPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
.....+|.. ...+|+.+....|+-..+..... ...+.. .-..+.+++|.+.++.++.+-...
T Consensus 298 -------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~ 361 (628)
T 4a0p_A 298 -------------NADNRTCSA---PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ 361 (628)
T ss_dssp -------------CTTSSCEEC---CSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred -------------cccCCcCcc---ccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCc
Confidence 111122322 24566666677777666653321 112221 234578999998556666666667
Q ss_pred CcEEEEecccceeeecccc------cccCeeEEEEcCCCCEE-EEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 895 STIHIYNVRVDEVKSKLKG------HQKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.|+.++.........+.. ....+.++++...++.| .+-+..+.|.+.+++. +....+... ......
T Consensus 362 ~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~-----~l~~Pr 435 (628)
T 4a0p_A 362 NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKG-----EQDRPR 435 (628)
T ss_dssp TEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEEC-----TTCCEE
T ss_pred ceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeC-----CCCcee
Confidence 8898888764332222221 23467899999876644 5666778899999864 322222111 115688
Q ss_pred EEEEcCCCCEEEEEe--cC--eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCCceE
Q 001190 968 RVQFNADQVRMLVVH--ET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLR 1042 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~ 1042 (1128)
.+++.|...+|..++ .. .|...++. |.....+.... -.....++++++++.|+.+.. .+.|...++.. ...
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~--l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r 511 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSG--LSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANR 511 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEecc--CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-Cce
Confidence 999999544454433 22 56666654 33222222211 456789999998877776654 57899999854 333
Q ss_pred EEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1043 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
..+.. .....+.+++... +.++.+=...+.|...|..+|+.
T Consensus 512 ~~~~~-----------~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 512 IVLED-----------SNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEEC-----------SSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEc-----------CCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCC
Confidence 33331 1122346677644 45666666667787778777664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-09 Score=113.66 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=150.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
...+.+|+|++..+++++..++.|..||..+++... + .+...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 467889999876688888888999999998765421 1 123579999999999987765
Q ss_pred CCCeEEEEEccCCCcceeceeec-c-cccceeEEEEecCCCeEEEEEecC------CCeEEEEecCCCeEEEecCCCCCe
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~fs~d~~~~~l~s~s~------d~~i~vWd~~g~~~~~~~~h~~~v 497 (1128)
.+ .|.+||..+++... +.... + ....+++++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876432 11111 1 124689999999998 4444331 24555555 5543 3333333456
Q ss_pred EEEeccCCCCccEEEE-EeccCcEEEEecC--CC-Cc---e-e-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 498 YSICPHHKENIQFIFS-TAIDGKIKAWLYD--TM-GS---R-V-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~--~~-~~---~-~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
..++|++ +++.++. .+.++.|.+|+++ ++ .. . . .+......+..++++++|.+.++.. +.+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEE
Confidence 7888866 5665544 4557899999986 33 21 1 1 1222345678899999998766654 3678999
Q ss_pred EeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEECC
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 606 (1128)
||. +++.+..+..+.. .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777765543 68889998 888877666543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-05 Score=92.09 Aligned_cols=525 Identities=10% Similarity=-0.034 Sum_probs=285.1
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~~ 443 (1128)
..+.|+.-++++...... +....-..+..|+|++++..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 567889999876543211 011123467899999976666655 457889999987654322
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEE-eccCcEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST-AIDGKIK 521 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~ 521 (1128)
.+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|. +|.+.++- +..+.|.
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKID 149 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEE
Confidence 12222245778999887665 4556666788999996666544443 33345688898764 33344443 2356777
Q ss_pred EEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++.. ..++
T Consensus 150 r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~--~~ly 221 (628)
T 4a0p_A 150 RAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET--TEEE
T ss_pred EEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC--CEEE
Confidence 7777655444333 34557899999999888877653 577899999876544 33332222 334566654 4555
Q ss_pred EEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEE-EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCc
Q 001190 602 AVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR-FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1128)
Q Consensus 602 ~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1128)
... ..+.|...|..+++....+...-. ....+. +++..+. ... +.. ...+.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---------------~~n-~C~---------~~ng~ 274 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---------------GWN-ECA---------SSNGH 274 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---------------CCC-TTT---------TTGGG
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---------------cce-Eec---------cCCCC
Confidence 554 578888888877766555542211 222332 2221100 000 000 00011
Q ss_pred ceeeeeecc-cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 680 IESVALKVS-ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 680 i~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
...+++..- +.+-++ .+.|-.+
T Consensus 275 C~~~C~~~~~~~~~C~----------------------------C~~g~~l----------------------------- 297 (628)
T 4a0p_A 275 CSHLCLAVPVGGFVCG----------------------------CPAHYSL----------------------------- 297 (628)
T ss_dssp CSSEEEEETTTEEEEE----------------------------CSTTCEE-----------------------------
T ss_pred cchhhhcCCCCCeeEE----------------------------cCCCcEe-----------------------------
Confidence 111222111 111100 0000000
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
.....+|. .+ ..+++.+. ...|+-..+.... ......... .-..+..++
T Consensus 298 ----~~d~~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~--------------------~~~~~l~~~---~~~~~~~ld 346 (628)
T 4a0p_A 298 ----NADNRTCS--AP-TTFLLFSQ-KSAINRMVIDEQQ--------------------SPDIILPIH---SLRNVRAID 346 (628)
T ss_dssp ----CTTSSCEE--CC-SSEEEEEE-TTEEEEECCCTTC--------------------CCCEECCCT---TCSCEEEEE
T ss_pred ----cccCCcCc--cc-cceeeeec-cceEEEEeccccc--------------------CceEEEEeh---hcCCceEEE
Confidence 00000111 01 22233322 2233322221100 000000011 234578899
Q ss_pred eccCCCeEEEEe--CCeEEEEECCCceEEEEeeC------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 839 LSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 839 ~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
|.+.+..|..+. .+.|+.++.........+.. ....+..+++....+.+..+-+..+.|.+.+++ |+....
T Consensus 347 ~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~ 425 (628)
T 4a0p_A 347 YDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGV 425 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEE
T ss_pred EecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEE
Confidence 999888777776 57799888765433333322 234678999998445566677788899999986 443333
Q ss_pred c-cccccCeeEEEEcC-CCCEEEEEcCCC--cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 911 L-KGHQKRITGLAFST-SLNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 911 l-~~h~~~V~~l~~s~-d~~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
+ ........++++.| .|.++.+-.... .|...+++.... ..+ .. . .......+++++++..|..++ .+
T Consensus 426 l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l-~~---~-~l~~P~gla~D~~~~~LYw~D~~~~ 499 (628)
T 4a0p_A 426 VLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL-FF---S-GLSKPIALALDSRLGKLFWADSDLR 499 (628)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE-EC---S-SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE-Ee---c-cCCCccEEEEeCCCCEEEEEeCCCC
Confidence 3 23345688999999 455545433222 466666654332 111 11 1 115678999999988888776 47
Q ss_pred eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|..+++. |.....+.... ......+++.. +.+..+-...+.|...|..+|+....+.
T Consensus 500 ~I~~~~~d-G~~r~~~~~~~--~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 500 RIESSDLS-GANRIVLEDSN--ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEEETT-SCSCEEEECSS--CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEEeCC-CCceEEEEcCC--CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 88888885 33333332211 34456777643 4444444456778888888777555444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-09 Score=127.53 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=134.9
Q ss_pred CCeEEEEECCCceEEEEeeCCCC--------------------------------CeeEEEEcCCCCCEEEEEeCCC---
Q 001190 851 GGKISLFNMMTFKVMTTFMSPPP--------------------------------ASTFLAFHPQDNNIIAIGTEDS--- 895 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~~~--------------------------------~v~~l~~s~~d~~~lasg~~dg--- 895 (1128)
++.|+.||..+|+.+..+..... ....+++++ ++.+|..+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 46677777777777766653221 123578888 677777777664
Q ss_pred ----------------cEEEEecccceeeecccc--cc-------cCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCC
Q 001190 896 ----------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSL---NILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 896 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~---~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|.++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998876543 21 122233444577 68899999999999999999
Q ss_pred cccceeEEeecC----------------------------CCC-CCCccEEEEcCCCCEEEEEe----------------
Q 001190 948 EKRKSVTIHIPA----------------------------GKT-PTGDTRVQFNADQVRMLVVH---------------- 982 (1128)
Q Consensus 948 ~~~~~~~~~~~~----------------------------~~~-~~~v~~v~~s~d~~~l~~~~---------------- 982 (1128)
+.+......... +.. ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 976554422100 000 00112578999988887742
Q ss_pred ----------------------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 983 ----------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 983 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
.+.|..||+.+++.+-.+.. ..++....++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 16799999999998776654 3445556678889999999999999999
Q ss_pred ecCCCceEEEeCC
Q 001190 1035 DADTLRLRCYIAP 1047 (1128)
Q Consensus 1035 d~~~~~~~~~~~~ 1047 (1128)
|+++|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999998873
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.7e-09 Score=112.99 Aligned_cols=224 Identities=8% Similarity=0.052 Sum_probs=145.6
Q ss_pred eeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 834 VPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
....+|+|+++.++..+ ++.|..||..+++.. .+. ....+.++++++ +++++++. . ..|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 46789999866555444 688999999887654 233 346799999999 78777654 3 44999999887653221
Q ss_pred c---c-cccCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 912 K---G-HQKRITGLAFSTSLNILVSSGAD----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 912 ~---~-h~~~V~~l~~s~d~~~l~s~~~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
. + ....+..++++++|+++++...+ +...||.+.+++.. ...... .....++|+|||+.++++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~------~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADI------SIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEE------SSEEEEEECTTSCEEEEEET
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCCC------cccCCeEEcCCCCEEEEEEC
Confidence 1 1 12468899999999977765422 23344444344322 111111 3456899999999877764
Q ss_pred -cCeEEEEecC--Cc-ccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCccc
Q 001190 983 -ETQLAIYDAS--KM-ERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1056 (1128)
Q Consensus 983 -d~~i~v~d~~--~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1056 (1128)
++.|.+|+.. ++ ... ..+............++++++|+++++...++.|.+||. +++.+..+.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---------- 267 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---------- 267 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE----------
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE----------
Confidence 6789999986 55 321 111111111355688999999997777766789999998 677766665
Q ss_pred CCCCccceEEEEEe-cCCCCEE-EEEECC
Q 001190 1057 NGSQTVYPLVVAAH-PLEPNQF-AIGLTD 1083 (1128)
Q Consensus 1057 ~~~~~~~~~~~~~~-p~~~~~l-~s~~~d 1083 (1128)
.....+.+++|. | +++.| ++...+
T Consensus 268 --~~~~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 268 --VPGKQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp --CSCSBEEEEEEEST-TSCEEEEEEBCT
T ss_pred --CCCCCcEEEEEecC-CCCEEEEEecCC
Confidence 122357899998 6 45554 555444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-09 Score=127.70 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=186.4
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe----------E-EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------i-~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~----~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGV----LDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEc----cCCEEEEEECCCCCEe
Confidence 47778888899999999998888877654321 0 11222 345666665 3889999999999998
Q ss_pred eEeccc-cCCceeEEEEeC--CCCEEEEEE------CCCcEEEEECCCCeeeEEEecCCC--------------------
Q 001190 578 RTYAGF-RKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDAEGG-------------------- 628 (1128)
Q Consensus 578 ~~~~~~-~~~~v~~~~~~~--~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 628 (1128)
..+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 887653 110101111111 134555544 378999999999999887753110
Q ss_pred ---------CCCcceEEEcCCCCEEEEEEcCCc-------------------EEEEEcccCccccccccCCccccccCcc
Q 001190 629 ---------LPNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALRTPI 680 (1128)
Q Consensus 629 ---------~~~v~~v~~sp~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (1128)
......++++|++.++++++.++. |..||..+++..... +..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~--------- 294 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTT--------- 294 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESS---------
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecC---------
Confidence 001135778888888888887764 444444444221110 000
Q ss_pred eeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCC
Q 001190 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (1128)
Q Consensus 681 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (1128)
.-..|+..
T Consensus 295 --------------------------------------------------------~~d~wd~~---------------- 302 (689)
T 1yiq_A 295 --------------------------------------------------------PGDAWDYT---------------- 302 (689)
T ss_dssp --------------------------------------------------------TTCCSCCC----------------
T ss_pred --------------------------------------------------------Cccccccc----------------
Confidence 00111110
Q ss_pred CCCcccEEEEEEecCcc---eEEEeeccceeEeeeccccCCCCCCceeeeeccc--eec----cCCCcccc---------
Q 001190 761 TDTSSKVVRLLYTNSAV---GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ--HWL----PSSGLLMA--------- 822 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~--------- 822 (1128)
......-.....+|+ .++.++.+|.++++|...++. ....... -|. ..++..+.
T Consensus 303 --~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~ 374 (689)
T 1yiq_A 303 --ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWK 374 (689)
T ss_dssp --CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTT
T ss_pred --CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE------eccccccccccccccCccCCCcccchhhccccC
Confidence 011111112222454 677788888888888655432 1110000 010 01111000
Q ss_pred -----ccccCCCCCCCeeEEEeccCCCeEEEEe----------------------------------------------C
Q 001190 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT----------------------------------------------G 851 (1128)
Q Consensus 823 -----~~~~~~~~~~~v~~~~~s~dg~~la~~~----------------------------------------------d 851 (1128)
....+..-...-..++|+|+..++++.. +
T Consensus 375 ~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 454 (689)
T 1yiq_A 375 NGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWS 454 (689)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCE
T ss_pred CCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcc
Confidence 0000000011223478888887776641 2
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-eeEEEEcCCCCEE
Q 001190 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNIL 930 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 930 (1128)
|.|..||+.+++.+..+..+.. +..-.++. .+.+++.|+.||.|+.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999988875543 33334555 5678899999999999999999999888755333 2457778888744
Q ss_pred E
Q 001190 931 V 931 (1128)
Q Consensus 931 ~ 931 (1128)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-10 Score=122.65 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=133.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.++.+++++... ++++|+.+ .+.+|++......... .. ...+......+.+ |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~-------~~--~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITS-------DS--TPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHS-------SS--CCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcc-------cc--ccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 77888777 5566998654311000 00 0011112334666 999999 99999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
.++.|++||+.+..... ....|..++.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 35567788888887755 267788899999999 6666543 445799999987
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCc--eeee------c---CCCCeEEEEEEcCCCCeEEEeee
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~------~---~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+| ++.|..||.+++|+.+.... +.++ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999998877664 4444 2 35679999999999998887553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-10 Score=120.96 Aligned_cols=266 Identities=7% Similarity=-0.064 Sum_probs=168.5
Q ss_pred cEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe--------
Q 001190 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (1128)
Q Consensus 358 ~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 425 (1128)
+++++...++ +|.+.|..+++.+.. +-.|. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3555555455 888999999988753 12222 34 799999999999886
Q ss_pred --CCCeEEEEEccCCCcceeceeecc-c----ccceeEEEEecCCCeEEEEEec--CCCeEEE--Ee-cCCCeEEEecCC
Q 001190 426 --TKHLIQLYSYAGSNDLRQHSQIDA-H----VGAVNDLAFAYPNKLLCVVTCG--DDKLIKV--WE-LSGRKLFNFEGH 493 (1128)
Q Consensus 426 --~d~~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~l~fs~d~~~~~l~s~s--~d~~i~v--Wd-~~g~~~~~~~~h 493 (1128)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.--
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36889999999998877542 210 0 134678999999995 44443 3567888 99 55 4444311
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC----CCcee-----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT----MGSRV-----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~----~~~~~-----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
+. ..+.+.+. ..+++.+.||.+.+.++++ ..... .+.....+. . ++++..++..+ . +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs----~-~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV----A-S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB----S-S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc----C-C
Confidence 11 12223322 3455667788888787765 11111 111122233 3 56666666654 2 6
Q ss_pred eEEEEeCCCCc--eeeEeccc---------cCCceeEEEEeCCCCEEEEEEC---------CCcEEEEECCCCeeeEEEe
Q 001190 565 FLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 565 ~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 624 (1128)
.+.+.|..++. .+..+... .......+++++++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886542 22222111 0011223789999998887643 2356699999999988886
Q ss_pred cCCCCCCcceEEEcCCCCE-EEEEE-cCCcEEEEEcccCccccccc
Q 001190 625 AEGGLPNLPRLRFSKEGNL-LAVTT-ADNGFKILANAIGLRSLRAV 668 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1128)
... ....++|+|||+. +++.. .++.|.++|+.+. +..+.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 543 3689999999984 55555 4899999999987 333333
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-05 Score=94.41 Aligned_cols=524 Identities=8% Similarity=-0.020 Sum_probs=269.4
Q ss_pred CCCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe--EEEecCCCCCeEEEec
Q 001190 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~--~~~~~~h~~~v~~~~~ 502 (1128)
....|+..++.... ... .+.........++|.+.+.. ++++-...+.|..++.+|.. ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 35568888887642 111 12233445789999997774 44555557889888855542 2233333356788888
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..-.. ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 653 33456666677899999987655444443445567889999986666655321 245677777654333222222
Q ss_pred ccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.......++++++++.|+.+. ..+.|...|+............ ......+++..+ .+.++-...+.|...|..++
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 222567799999888877775 5678999998765544333211 123467777655 33344445678888888776
Q ss_pred ccccccccCCccccccCcceeee-eecccccccccCCCCcceecccCCCCCcccccCCCC---CCCCCCCCcccCCCCCC
Q 001190 662 LRSLRAVENPPFEALRTPIESVA-LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP---TSRSMDKPRTVDDVTDK 737 (1128)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~d~~ 737 (1128)
... ..+.... . ....+. +.+..+-.. .+ ++....+.+. ..++......+.+.+|.
T Consensus 245 ~~~-~~i~~~~----~-~p~~i~v~~~~~qp~~----~n-----------~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~ 303 (619)
T 3s94_A 245 EGL-REIHSDI----F-SPMDIHAFSQQRQPNA----TN-----------PCGIDNGGCSHLCLMSPVKPFYQCACPTGV 303 (619)
T ss_dssp CCC-EECCSCC----C-CCSEEEECCGGGSCCC----CC-----------TTTTTGGGCSSEEEECSSTTSEEEECCTTC
T ss_pred ccc-EEEecCC----C-CCcEEEEEccccCCCc----cc-----------cccCCCCcccceEECCCCCCCceEeCCchh
Confidence 332 2221110 0 112222 222211100 00 0000000000 00000000000000000
Q ss_pred CCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCC
Q 001190 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (1128)
Q Consensus 738 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1128)
. + .....+|. .....+|+.+ ..+.|+..++.....
T Consensus 304 ~----l-------------------~~d~~~C~--~~~~~~Ll~~-~~~~i~~i~l~~~~~------------------- 338 (619)
T 3s94_A 304 K----L-------------------LENGKTCK--DGATELLLLA-RRTDLRRISLDTPDF------------------- 338 (619)
T ss_dssp C----B-------------------CTTSSCBC--SSCSEEEEEE-ESSCEEEEESSSTTC-------------------
T ss_pred e----e-------------------cccCcccC--CCCceEEEEE-cccceEEEecCCCcc-------------------
Confidence 0 0 00000000 0011223322 233444444322110
Q ss_pred CccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 818 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
......+. .-..+..++|.+.+..|..++ .+.|+.++.........+...-.....+++...+++++.+-+..+
T Consensus 339 -~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~ 414 (619)
T 3s94_A 339 -TDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 414 (619)
T ss_dssp -CCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred -ceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCC
Confidence 00000111 234477899998777776665 678999998764443334333456778999864666777777788
Q ss_pred cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEc--CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
.|.+.++........+...-....++++.|...+|.... ....|...+++.... ..+ . .. .......+++++
T Consensus 415 ~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l-~---~~-~l~~P~GlalD~ 488 (619)
T 3s94_A 415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVL-V---NT-SLGWPNGLALDY 488 (619)
T ss_dssp EEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-E---CS-SCSCEEEEEEET
T ss_pred cEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEE-E---eC-CCCCCeeeEEcc
Confidence 999999875432222222335678999999744444333 235677667664332 111 1 11 115678999999
Q ss_pred CCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCce
Q 001190 974 DQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRL 1041 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~ 1041 (1128)
++..|..++ .+.|..+++............ ......+++. +.+|+.+. ..+.|...|..+|..
T Consensus 489 ~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~---l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 489 DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK---IPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEEECC---CCSSCCEEEE--TTEEEEECTTSSCEEEEESSSCCE
T ss_pred cCCEEEEEECCCCEEEEEecCCCceEEEeccC---CCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCCce
Confidence 888888775 567888887533322111111 1223355553 33566554 456688788777743
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.3e-09 Score=112.14 Aligned_cols=236 Identities=11% Similarity=0.071 Sum_probs=153.4
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+..+.......+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 344555678899999999 5566667889999998 444 22 2445667799999999998 56666666899999
Q ss_pred ecCCCeEEEec---CC-CCCeEEEeccCCCCccEEEE----Eec-------------cCcEEEEecCCCCceeeecCCCC
Q 001190 481 ELSGRKLFNFE---GH-EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 481 d~~g~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
+.+|+...... +. ...+..+++.+ +|.+.++ |.. .+.|..||..++...... ...
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 113 DADGQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp CTTSCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 95566432221 11 12356778755 6677776 331 245666666554443332 334
Q ss_pred eEEEEEEcCCCCeEEEeeecc--CCCceEEEEeCCCCcee--eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 568899999999887765310 01268999998765421 1221111224556889999984 444444 5999998
Q ss_pred CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
.++.+..+.... .+..++|+++++.|.+++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 566666666543 478899999999998888764433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-09 Score=125.96 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=117.2
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEecccceeeecccc--cc-------cCeeEEEEcCCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDST-------------------IHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 928 (1128)
.++++| +..+++.+..++. |.-||..+|+.+..++. |. .+........+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 678888 6778888887764 99999999998876653 21 1222223333665
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEee-----------------------cCCC----------CCCCccEEEEc
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHI-----------------------PAGK----------TPTGDTRVQFN 972 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~----------~~~~v~~v~~s 972 (1128)
.++.++.+|.++++|..+|+.+....... .... -...-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998763322110 0000 00112237899
Q ss_pred CCCCEEEEEe----------------------------------------------cCeEEEEecCCcccccccccCCCC
Q 001190 973 ADQVRMLVVH----------------------------------------------ETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 973 ~d~~~l~~~~----------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
|+..++++.. ++.|..||+.+++.+-.+..+
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 9888877641 267999999999987776543
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.++..-.++..|.++++|+.||.|+.||.++|+.+..+.
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 233344677788999999999999999999999998887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-09 Score=125.47 Aligned_cols=323 Identities=11% Similarity=0.065 Sum_probs=188.8
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe-----------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~----~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGA----WDGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 46777777888888998888888776654320 112233 455666665 3889999999999999
Q ss_pred eEeccc-cC---Ccee-EEEEeCCCCEEEEEEC------CCcEEEEECCCCeeeEEEecCCCC-----------------
Q 001190 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (1128)
Q Consensus 578 ~~~~~~-~~---~~v~-~~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (1128)
..+... .. ..+. ...+ .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888765 20 0111 1112 2356666553 799999999999998877653321
Q ss_pred -------------CCcceEEEcCCCCEEEEEEcCCc-------------------EEEEEcccCccccccccCCcccccc
Q 001190 630 -------------PNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALR 677 (1128)
Q Consensus 630 -------------~~v~~v~~sp~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1128)
.....++++|++.+++++..++. |..+|..+++..... +.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~------- 301 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QE------- 301 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ES-------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ec-------
Confidence 01135678888888888776643 333333333111100 00
Q ss_pred CcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEe
Q 001190 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1128)
Q Consensus 678 ~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (1128)
..-..|+..
T Consensus 302 ----------------------------------------------------------~~~d~wd~~------------- 310 (677)
T 1kb0_A 302 ----------------------------------------------------------TPGDNWDYT------------- 310 (677)
T ss_dssp ----------------------------------------------------------STTCCSCCC-------------
T ss_pred ----------------------------------------------------------CCCcccccc-------------
Confidence 000011111
Q ss_pred cCCCCCcccEEEEEEecCc---ceEEEeeccceeEeeeccccCCCCCCceeeeec------cceeccCCCcccc------
Q 001190 758 PESTDTSSKVVRLLYTNSA---VGLLALGSNGVQKLWKWHRNEQNPSGKATASAV------PQHWLPSSGLLMA------ 822 (1128)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~g---~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------ 822 (1128)
......-+....+| ..++.++.+|.++++|...++. ..... ..-+| .++..+.
T Consensus 311 -----~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~------l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 311 -----STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF------ISAKNFVPVNWASGYD-KHGKPIGIAAARD 378 (677)
T ss_dssp -----CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE------EEEEESSCCSSEEEEC-TTSCEEECGGGGC
T ss_pred -----cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE------eccccccccCcccccC-CCCceeeccccCc
Confidence 01111122233466 5677888889888888665432 11110 00111 2222111
Q ss_pred -----ccccCCCCCCCeeEEEeccCCCeEEEEe-C-------------------------------------------Ce
Q 001190 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT-G-------------------------------------------GK 853 (1128)
Q Consensus 823 -----~~~~~~~~~~~v~~~~~s~dg~~la~~~-d-------------------------------------------g~ 853 (1128)
....+..-...-..++|+|++.++++.. + |.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 0000000011123678899888877643 1 67
Q ss_pred EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cCeeEEEEcCCCCEEEE
Q 001190 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVS 932 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s 932 (1128)
|..||+.+++.+..+.. ...+....+.. ++.+++.++.||.+++||..+|+.+.++.... ....-+.|..+|+.++.
T Consensus 459 l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99999999999888763 33344455666 66788889999999999999999998887443 23345667788875543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-08 Score=110.59 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=99.7
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCC---------CCCeE-EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH---------EAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h---------~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1128)
.++.++.++.|..+| .+|+.+...... ...+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 577788899999999 789988666542 12232 2222 33578888999999999999988887766
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
..........+. + ..+++++ .++.|..+|..+|+.+..+....... ....... +..+++++.++.|..
T Consensus 131 ~~~~~~~~p~~~-~-~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-GLVLIHT----SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE-T-TEEEEEC----TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE-C-CEEEEEc----CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 554322222222 3 3555554 37899999999999888776543210 0122222 457888888999999
Q ss_pred EECCCCeeeEEEec
Q 001190 612 WDMDNVNILTSTDA 625 (1128)
Q Consensus 612 wd~~~~~~~~~~~~ 625 (1128)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988877654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-08 Score=114.82 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=170.8
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE-e-CCCCEEEEEE------------------CCC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDS 607 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s------------------~dg 607 (1128)
+||+++..+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48888888653 57789999999999888554433335677787 5 9999999985 246
Q ss_pred cEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
.+.+.|.++.+.+..+...+. ...++++|+|+++++.+.+..--.+ +...... ..
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~--------i~~~~~~-------~~------- 230 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMT--------LPEMTAA-------EM------- 230 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSS--------HHHHTCC-------SE-------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcc--------hhhcccc-------cc-------
Confidence 799999999999988876442 4678899999999998865321000 0000000 00
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
..+.+.+... .
T Consensus 231 ------------------------------------------------d~v~V~~~~~-----------------~---- 241 (595)
T 1fwx_A 231 ------------------------------------------------DHIVVFNIAE-----------------I---- 241 (595)
T ss_dssp ------------------------------------------------EEEEEEEHHH-----------------H----
T ss_pred ------------------------------------------------ceEEEeeccc-----------------e----
Confidence 0000000000 0
Q ss_pred EEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
..+.++|++... +.+.+.|....+ +......+. -.....++.++|||++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence 001122322221 224444432100 111000111 233566899999999999
Q ss_pred EEe--CCeEEEEECCCce------------EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc---------
Q 001190 848 SAT--GGKISLFNMMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--------- 904 (1128)
Q Consensus 848 ~~~--dg~i~vwd~~~~~------------~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~--------- 904 (1128)
+++ +++|.++|+.+.+ ...+.. -......++|++ +|...++...|++|.+||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 887 6889999999763 233332 334678999999 776667778999999999987
Q ss_pred -ceeeecccccccCe-----eEEEEcCCCCEEEEEc---CCCcE----------EEEECCCCcc
Q 001190 905 -DEVKSKLKGHQKRI-----TGLAFSTSLNILVSSG---ADAQL----------CVWSIDTWEK 949 (1128)
Q Consensus 905 -~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~~---~Dg~i----------~iwd~~~~~~ 949 (1128)
.+.+.++..|-.+. .++.++|||++|++.. .|+.+ .++|+.+++.
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 45566665554332 3345689999999864 35432 8899976654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-11 Score=136.97 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=130.9
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-ee
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-IT 919 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~ 919 (1128)
++..+++++ ||.|..||..+|+.+.++.. +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999988876 4555555666 7778888889999999999999887666544221 11
Q ss_pred -EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccc
Q 001190 920 -GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERI 997 (1128)
Q Consensus 920 -~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~ 997 (1128)
+..+. ++..+++++.|+.|+.||..+|+.+....... ...++|++..++++ .++.|+.||..+|+.+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----------ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----------cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 34567778889999999999998765543321 13456677777765 5899999999999876
Q ss_pred cccccCCCCCCCeEEEEEeeCC---CEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 998 RQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
..+.... ....+++.+. ..+++++.||.|+.||..+|+.+..... ..++ +....+++ ++
T Consensus 154 W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-----------~~pv-~~~~~~~~-dg 215 (369)
T 2hz6_A 154 WNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-----------ASPV-VAFYVWQR-EG 215 (369)
T ss_dssp CEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-----------SSCE-EEEEECTT-SS
T ss_pred EeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-----------CCce-EEEEEecC-Cc
Confidence 6554321 1223334432 5577788999999999999999887762 1111 11233333 33
Q ss_pred CEEEE--EECCCcEEEEcCCCCC----CCcccCC
Q 001190 1075 NQFAI--GLTDGSVKVMEPSESE----GKWGVSP 1102 (1128)
Q Consensus 1075 ~~l~s--~~~dg~i~iWd~~~~~----~~w~~~~ 1102 (1128)
...+. ...++.++.+|..+|+ ..|....
T Consensus 216 ~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 216 LRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred eEeccceeecccceeeeehhcCCcccceeeeecc
Confidence 32110 1125567788888887 7787654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=0.00025 Score=89.80 Aligned_cols=609 Identities=10% Similarity=0.037 Sum_probs=287.2
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----CCEEEE
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGV 423 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las 423 (1128)
.|+++-.+| +|..||..|.=.+|.+.....-...-+++ .. --..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~-----------~~-~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVA-----------ME-TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEE-----------EE-EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEe-----------Ee-eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 67888888877888876542100000000 00 1123467887777432 235555
Q ss_pred Ee---CCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCe
Q 001190 424 AF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 424 ~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v 497 (1128)
++ .+|.+++..-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+..+|..+..+.. .
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~-~--- 467 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETEL-M--- 467 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECC-T---
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCccccccc-c---
Confidence 44 467788765432211111112332 34566665432 234 5665555655 455544444443321 1
Q ss_pred EEEeccCCCCccEEEEEe---------ccCcEEEEecCCCCceeeecCCC-CeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 498 YSICPHHKENIQFIFSTA---------IDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.|. .+...|+++. ....|++.+.+.......+.... ..|...+.+. .+++.+. .+.+.
T Consensus 468 ---gf~--~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~ 535 (1158)
T 3ei3_A 468 ---GFV--DDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALY 535 (1158)
T ss_dssp ---TCC--SSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEE
T ss_pred ---ccc--CCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEE
Confidence 111 1222333332 12345666654444444444333 3566666543 3555553 35677
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCC------CCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEc--
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS-- 638 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-- 638 (1128)
++.+..+++.......-...+.|+++.+. +.++++|.. |++|+|+++.+.+.+........ ....++.+.
T Consensus 536 ~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~ 614 (1158)
T 3ei3_A 536 YLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTF 614 (1158)
T ss_dssp EEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEE
T ss_pred EEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEe
Confidence 77776654333222222346888888753 368899986 99999999998777765554321 123344332
Q ss_pred CCCCEEEEEEcCCcEEEEEccc--Cccccc--cccCCccccccCcceeeeeecccccccccCCCCcceecccCC------
Q 001190 639 KEGNLLAVTTADNGFKILANAI--GLRSLR--AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP------ 708 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~--~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~------ 708 (1128)
....+|.+|-.||.+.-+.++. +.-... ..-+ ..++.-..+...|..-+...+...+.+-....
T Consensus 615 ~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG------~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~ 688 (1158)
T 3ei3_A 615 ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG------TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSN 688 (1158)
T ss_dssp TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC------SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEE
T ss_pred CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC------CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEec
Confidence 2345788999999987665542 211000 0111 01222222222222111111111111100000
Q ss_pred C--CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 709 V--RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 709 ~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
. .....+........++| ++. ..++.++|..+... .......++ -...+..++++|+.+.++.+..+.
T Consensus 689 l~~~~v~~~~~F~se~~~~g--~v~-~~~~~LrI~~i~~~---~~~~~~~ip----L~~Tprri~y~~~~~~~~v~~~~~ 758 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDS--LAL-ANNSTLTIGTIDEI---QKLHIRTVP----LYESPRKICYQEVSQCFGVLSSRI 758 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTE--EEE-ECSSCEEEEEECCS---SSEEEEEEE----CSSEEEEEEEEGGGTEEEEEEEEE
T ss_pred cChHHhceEeccCcccCCCc--EEE-EcCCceEEEEeccc---CCeeEEEEe----CCCCceEEEEcCCCCEEEEEEEec
Confidence 0 00000111111111222 121 22245777666432 223333333 234677788888777666555432
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCc--cccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL--LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV 864 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~ 864 (1128)
.. ++. ++.. ...... ........ .....+....--++..+-.--.-+.|++.|..+++.
T Consensus 759 ~~--~~~-------~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~ 819 (1158)
T 3ei3_A 759 EV--QDT-------SGGT---------TALRPSASTQALSSSV-SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEV 819 (1158)
T ss_dssp EE--ECS-------SSSE---------EESSCCHHHHCSEEEE-CCCCCC----------CCCEEEEEEEEEEETTTCCE
T ss_pred cc--ccc-------cccc---------chhhhhhhhhhhhhcc-cccccccccccCchhhcCCceeeEEEEEEeCCCCeE
Confidence 11 110 0000 000000 00000000 000000000000000000000124588888888887
Q ss_pred EEEeeCCCC-CeeEEE---EcCCCCCEEEEEe----------CCCcEEEEecccceeeecc-cccccCeeEEEEcCCCCE
Q 001190 865 MTTFMSPPP-ASTFLA---FHPQDNNIIAIGT----------EDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTSLNI 929 (1128)
Q Consensus 865 ~~~~~~~~~-~v~~l~---~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~ 929 (1128)
+..+.-... .+.+++ |..+...++++|+ ..|.|++|++..+++.... ....++|++++-- +|++
T Consensus 820 i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~L 898 (1158)
T 3ei3_A 820 LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKL 898 (1158)
T ss_dssp EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEE
T ss_pred EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEE
Confidence 766653333 344444 4332357888887 3478999999755432211 1235778888744 3555
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE--ecCCcccccccccCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY--DASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~--d~~~~~~~~~~~~~~~h 1006 (1128)
|+.. ...|++|++...+.+. ...... ..+..+.....+.++++|+ -..+.++ +....+.. .+ ..+.+
T Consensus 899 la~i--g~~l~vy~l~~~~~L~-~~~~~~-----~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~-~~-a~D~~ 968 (1158)
T 3ei3_A 899 LASI--NSTVRLYEWTTEKELR-TECNHY-----NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE-EI-ARDFN 968 (1158)
T ss_dssp EEEE--TTEEEEEEECTTSCEE-EEEEEC-----CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEE-EE-EECCS
T ss_pred EEEc--CCEEEEEECCCCceEE-EEeecc-----ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEE-EE-Eeecc
Confidence 5544 4789999998765433 111111 1233333444577888887 4555554 43332222 12 22333
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
...++++.|-.++ .++.+..+|.+.+.....
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 7889999997665 677799999999997654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=110.93 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=107.5
Q ss_pred eEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee
Q 001190 455 NDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1128)
Q Consensus 455 ~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 534 (1128)
.+..+..+|. +..++.++.|..||.+|+.+.........+.++.+. .++ .++.++.+ +..+|. +++....+
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG--KDG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEET--TTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred cCceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEe--cCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 3445556665 677778889999997777766555444444555553 244 56666655 777875 44443333
Q ss_pred cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 535 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
...........+. + ..+..++ .++.|..+|.. ++....+..... .+..+...+++. ++.++.++.|+.+|.
T Consensus 94 ~~~~~~~~~~~~~-~-~~l~v~t----~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF-E-DILYVTS----MDGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE-T-TEEEEEC----TTSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE-C-CEEEEEe----cCCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 3333222333333 4 4455554 36789999988 777666654433 455566666665 666778899999998
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
. ++.......... .+.++.+.+++.+++.. +.|..+|
T Consensus 165 ~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~t---~~l~~~d 201 (330)
T 3hxj_A 165 D-GTEKWRFKTNDA--ITSAASIGKDGTIYFGS---DKVYAIN 201 (330)
T ss_dssp T-SCEEEEEECSSC--CCSCCEECTTCCEEEES---SSEEEEC
T ss_pred C-CCEeEEEecCCC--ceeeeEEcCCCEEEEEe---CEEEEEC
Confidence 8 777666654322 45666666666644433 5566655
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=0.00031 Score=88.92 Aligned_cols=570 Identities=9% Similarity=0.041 Sum_probs=284.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc-----ceeceeecccccceeEEEEecCC---CeEEEEEec---CCCe
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKL 476 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~fs~d~---~~~~l~s~s---~d~~ 476 (1128)
.-.|+++-.+| +|+.|+..|.=.+|.+..... +....++ ..-++|.+++..... +. .|++++ .+|.
T Consensus 328 ~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 328 IAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGS 404 (1158)
T ss_dssp CCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCE
T ss_pred CccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCe
Confidence 34667776555 788888877777777764322 1222222 345789888876421 22 234332 4578
Q ss_pred EEEEe--cCCCeEEEe--cCCCCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCCceeeecC-----CCCeEEEEEE
Q 001190 477 IKVWE--LSGRKLFNF--EGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-----PGHWCTTMLY 546 (1128)
Q Consensus 477 i~vWd--~~g~~~~~~--~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~ 546 (1128)
+++.. ..-..+..+ .+ -..++.+.... +....+|+.+..+.+ +++.+.. +....... ....+.+-.+
T Consensus 405 L~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l 481 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNV 481 (1158)
T ss_dssp EEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEE
T ss_pred EEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEc
Confidence 99887 333333333 32 24566665421 223457777666665 5565532 12222211 1112222222
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
.++ .++=.. ...|++.+...+..+..+....+..|...+.. +.+++.++ ++.+.++.+..++.......
T Consensus 482 -~~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~- 550 (1158)
T 3ei3_A 482 -AHQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT- 550 (1158)
T ss_dssp -TTT-EEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-
T ss_pred -CCC-eEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-
Confidence 222 444333 45578888776667777765554456666554 35676665 67888888876653322211
Q ss_pred CCCCCcceEEEcCC------CCEEEEEEc-CCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCC
Q 001190 627 GGLPNLPRLRFSKE------GNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 699 (1128)
.-...|.|+++.|. +.++++|.. |++++|+++.+-.. .....-.. .....++.+..-+.
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-~~~~~L~~----~~~p~si~l~~~~~--------- 616 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-LHKEMLGG----EIIPRSILMTTFES--------- 616 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-EEEEECCS----SCCEEEEEEEEETT---------
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-EEEEECCC----CCCCcEEEEEEeCC---------
Confidence 11236899998863 479999996 99999999975422 11111000 01122222221100
Q ss_pred cceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCcee---EEEecCCCCCcccEEEEEEecCc
Q 001190 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR---LVTMPESTDTSSKVVRLLYTNSA 776 (1128)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~g 776 (1128)
..++..+-.||.+..+.+.. ..+.+. ...+ -..++.=..+...|
T Consensus 617 --------------------------~~~L~igl~dG~l~~~~~d~--~tg~l~d~r~~~L-----G~~pv~L~~~~~~~ 663 (1158)
T 3ei3_A 617 --------------------------SHYLLCALGDGALFYFGLNI--ETGLLSDRKKVTL-----GTQPTVLRTFRSLS 663 (1158)
T ss_dssp --------------------------EEEEEEEETTSEEEEEEECT--TTCCEEEEEEEEC-----CSSCCEEEEEESSS
T ss_pred --------------------------CcEEEEEeCCCeEEEEEEcC--CCCccccceeEEc-----CCCceEEEEEeeCC
Confidence 01112222222221111110 000000 0000 01122222222222
Q ss_pred ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCee-EEEeccC--CCeEEEEeCCe
Q 001190 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSKN--DSYVMSATGGK 853 (1128)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d--g~~la~~~dg~ 853 (1128)
..-+.+..+.-..++.- .+......+ ....+. ...|+.. ..-++..+++.
T Consensus 664 ~~~V~a~s~rp~liy~~-----------------------~~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~ 716 (1158)
T 3ei3_A 664 TTNVFACSDRPTVIYSS-----------------------NHKLVFSNV----NLKEVNYMCPLNSDGYPDSLALANNST 716 (1158)
T ss_dssp CEEEEEESSSCEEEEES-----------------------SSSEEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSC
T ss_pred ceeEEEECCCCEEEEEc-----------------------CCceEEecc----ChHHhceEeccCcccCCCcEEEEcCCc
Confidence 22222222222222210 011110011 111222 2334332 23455555666
Q ss_pred EEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-------------------------------------
Q 001190 854 ISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED------------------------------------- 894 (1128)
Q Consensus 854 i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d------------------------------------- 894 (1128)
++|..++... .++++. -...+..++++| ..+.++.+..+
T Consensus 717 LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1158)
T 3ei3_A 717 LTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTA 794 (1158)
T ss_dssp EEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-----
T ss_pred eEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccc
Confidence 8887765432 223332 234677888887 55544433311
Q ss_pred ------------CcEEEEecccceeeecccc-cccCeeEEE---EcCC-CCEEEEEc----------CCCcEEEEECCCC
Q 001190 895 ------------STIHIYNVRVDEVKSKLKG-HQKRITGLA---FSTS-LNILVSSG----------ADAQLCVWSIDTW 947 (1128)
Q Consensus 895 ------------g~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~~----------~Dg~i~iwd~~~~ 947 (1128)
+.|++.|-.+.+.+..+.- ....+.+++ |..+ ..+++.|. ..|.|.++++..+
T Consensus 795 ~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 795 PHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp -----CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred CchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 2356666665555443321 122344443 4433 45777765 2478999999754
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~ 1027 (1128)
+. ........ .+++.+++-- +| +|+++-+..+++|++...+.++ ..... -..|..+.....|.++++|+.
T Consensus 875 kL-~lv~~~~v----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~ 944 (1158)
T 3ei3_A 875 KL-QTVAEKEV----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDL 944 (1158)
T ss_dssp EE-EEEEEEEE----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEES
T ss_pred EE-EEEEEEEc----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEh
Confidence 32 22221111 1556665533 23 7788888999999998765444 11111 122334444446889999998
Q ss_pred CCcEEEE--ecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1028 DGNIGVF--DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1028 dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
-..|.++ +...+++...-. .-.+.+++++.|-. ...++.+..+|.+.+.....
T Consensus 945 ~~Sv~~~~y~~~~~~L~~~a~-----------D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 945 MRSVLLLAYKPMEGNFEEIAR-----------DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp SBCEEEEEEETTTTEEEEEEE-----------CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred hheEEEEEEEcCCCeEEEEEe-----------ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 7777765 444444433333 24566788898875 35889999999999997664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-08 Score=107.76 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=152.3
Q ss_pred EEe--CCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCC-CcceEEEEEccCCCEEEEEe
Q 001190 351 DFH--PSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 351 ~fs--pdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~~ 425 (1128)
.++ ++++++++.|-.++.|.|+|+.+.. ....+.++ ...+.... ...-..+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie-----------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE-----------PEEVKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC-----------HHHHHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec-----------hhhcccccCCCcccceeECCCe-EEEEcC
Confidence 457 8999888889999999999997541 11101110 00001011 1245567889999 666665
Q ss_pred CC------CeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEec-------------------CCCeEEE
Q 001190 426 TK------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKV 479 (1128)
Q Consensus 426 ~d------~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s-------------------~d~~i~v 479 (1128)
.+ |.|.+.|.++++.+..... .... .--+.+-|+|+++ .+++.. .+.+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 54 7899999999887765321 1222 2345688899999 677774 4789999
Q ss_pred Ee-cCCCeEEEecCC-C-CCeEEEeccCCCCccEEEEEec------cCcEEEEecCCCCcee--ee--cC-------C--
Q 001190 480 WE-LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRV--DY--DA-------P-- 537 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h-~-~~v~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~--~~--~~-------~-- 537 (1128)
|| .+++.+.++..- . .....+.|..+++++++++++. +++|.+|..+.+.... .+ .. .
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99 777777777642 1 2344565644567788888774 5688777665421111 10 00 0
Q ss_pred -------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC---CceeeEeccccC---------C----ceeEEEEe
Q 001190 538 -------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFD 594 (1128)
Q Consensus 538 -------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~---------~----~v~~~~~~ 594 (1128)
......+.+|+||++|.++.. +.+.|.++|+.. .+++..+..... . .-..+.++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678999999999998876 678999999863 344444433200 0 24568999
Q ss_pred CCCCEEEEEE
Q 001190 595 TTQNHFLAVG 604 (1128)
Q Consensus 595 ~~~~~l~~~s 604 (1128)
|||++|+++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999886
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-08 Score=105.98 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=149.8
Q ss_pred cCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-C
Q 001190 774 NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (1128)
Q Consensus 774 ~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-d 851 (1128)
.+++++++.+. ++.|.++|+......+.-.. .++ ..++.. -. .......+..+||| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k----~ie-----~~~~~~--~~---g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIK----VIE-----PEEVKK--VS---GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE----EEC-----HHHHHH--HH---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeee----eec-----hhhccc--cc---CCCcccceeECCCe-EEEEcCCC
Confidence 77888877665 78999998754322111100 000 000000 00 01134567888999 666553 3
Q ss_pred ------CeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEEEe-------------------CCCcEEEEecc
Q 001190 852 ------GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT-------------------EDSTIHIYNVR 903 (1128)
Q Consensus 852 ------g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~lasg~-------------------~dg~v~iwd~~ 903 (1128)
|.|.++|.++++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6799999999999998863222 133588899 888887774 36899999999
Q ss_pred cceeeeccccc-c-cCeeEEEE--cCCCCEEEEEc------CCCcEEEEECCCCcccceeEEeecCC----C--------
Q 001190 904 VDEVKSKLKGH-Q-KRITGLAF--STSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPAG----K-------- 961 (1128)
Q Consensus 904 ~~~~~~~l~~h-~-~~V~~l~~--s~d~~~l~s~~------~Dg~i~iwd~~~~~~~~~~~~~~~~~----~-------- 961 (1128)
+++.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.++......+..... .
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888777642 1 23345555 99999888766 45688887776543222222211110 0
Q ss_pred --CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCc---ccccccccCCC-----C------CCCeEEEEEeeCCCEEE
Q 001190 962 --TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKM---ERIRQWTPQDA-----L------SAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 962 --~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~---~~~~~~~~~~~-----h------~~~v~~l~~s~dg~~l~ 1023 (1128)
.......+.+|+||++|.++. .+.|.+||+... +.+..+...-. | ...-..+++||||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 014578899999999999975 789999998633 33333322100 0 11357899999999999
Q ss_pred EEe
Q 001190 1024 ATF 1026 (1128)
Q Consensus 1024 t~~ 1026 (1128)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-08 Score=107.55 Aligned_cols=233 Identities=10% Similarity=0.032 Sum_probs=149.4
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe---
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI--- 918 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V--- 918 (1128)
+..+++++ ++.|..+|..+|+.+..............+. + ..+++++.++.|..+|..+|+.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 44455555 8999999999999987776544333333343 3 367778889999999999998876665332111
Q ss_pred --eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC-CC---c-cEEEEcCCCCEEEEEecCeEEEEec
Q 001190 919 --TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP-TG---D-TRVQFNADQVRMLVVHETQLAIYDA 991 (1128)
Q Consensus 919 --~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~---v-~~v~~s~d~~~l~~~~d~~i~v~d~ 991 (1128)
...... +..++.++.++.|..+|..+|+.+............. .. + ..... .++..++.+.++.+..+|.
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEET
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEEC
Confidence 122222 3467778889999999999998765544322111000 00 0 11111 1344444445899999999
Q ss_pred CCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 992 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
.+++.+..... .....+.. ++..|++++.++.|..+|..+|+.+........ ..... ..+
T Consensus 257 ~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--------~~~~~-~~~---- 316 (376)
T 3q7m_A 257 RSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--------RLLTS-PVL---- 316 (376)
T ss_dssp TTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--------SCCCC-CEE----
T ss_pred CCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--------CcccC-CEE----
Confidence 99987755442 22334433 567788888999999999999998877652110 00001 112
Q ss_pred CCCCEEEEEECCCcEEEEcCCCCCCCcccCC
Q 001190 1072 LEPNQFAIGLTDGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
.+..++.++.+|.|.++|..+++..|....
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred -ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 246788899999999999999999887654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.3e-08 Score=105.66 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=172.2
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...+.++.+.++|. + ..|+.+ |..+|. +|+.+... ..+.......++. +..|..
T Consensus 59 ~~~~~~~~~~~~g~-l-~v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-I-YFGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE-E-CCSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc-E-EEecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEE
Confidence 34467888888887 3 445444 888885 55544321 1111122223333 556777
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEecc
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
++.++.|..+|.. ++.... ...+...+.++...+++. ++.++.++.|..+|..|+.+..+......+.++.+.
T Consensus 113 ~t~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKWR---FKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred EecCCEEEEEcCC-CCEEEE---EcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEc
Confidence 8888999999988 664432 333455577778877886 566777899999994488877776555556666653
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
.++. ++.++ +.|..+| .++............+.++...++|...+.. .++.+..+|. +++.+..+...
T Consensus 186 --~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-----~~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 --KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-----LDGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp --TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-----TTTEEEEECT-TSCEEEEEECS
T ss_pred --CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-----CCCeEEEECC-CCCEeEEeeCC
Confidence 2444 55555 8888998 6666666666666678888888888655543 2567888874 56666665543
Q ss_pred cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.. .+..+.+.+++ .|..++.+|.|..+|. +++.+....... ..+.++...+++. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445555444 6778888889999996 677766665433 2567777777776 56688899998876543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=115.04 Aligned_cols=239 Identities=7% Similarity=0.033 Sum_probs=167.1
Q ss_pred EEecc-----CCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEE-c-CCCCCEEEEEe--------------
Q 001190 837 IALSK-----NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGT-------------- 892 (1128)
Q Consensus 837 ~~~s~-----dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~-s-~~d~~~lasg~-------------- 892 (1128)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 899998876 567999999999988855433 245788888 5 8 788887774
Q ss_pred ----CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC-------------------------------
Q 001190 893 ----EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA------------------------------- 937 (1128)
Q Consensus 893 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg------------------------------- 937 (1128)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34579999999988887776322 346788999999999887543
Q ss_pred -------cEEEEECCC--Ccc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcc----------
Q 001190 938 -------QLCVWSIDT--WEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME---------- 995 (1128)
Q Consensus 938 -------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~---------- 995 (1128)
.|.|.|..+ ++. +..++.. ....++.++|||++++++. +..|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 477777776 433 3344443 4567899999999999975 7899999999663
Q ss_pred --cccccccCCCCCCCeEEEEEeeCCCEEE-EEecCCcEEEEecCC----------CceEEEeCCCCCCCCcccCCCCcc
Q 001190 996 --RIRQWTPQDALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADT----------LRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 996 --~~~~~~~~~~h~~~v~~l~~s~dg~~l~-t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
.+..... ......++|++|| +++ +...|+.|.+||+++ ...+.++.-.. . .+|..
T Consensus 321 ~~v~~~v~v----G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-q------pGh~~ 388 (595)
T 1fwx_A 321 SAVVAEPEL----GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-Q------PGHLK 388 (595)
T ss_dssp GGEEECCBC----CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-C------EEEEE
T ss_pred cceEEEcCC----CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-c------cccce
Confidence 2223322 5678999999999 555 466899999999987 55666666211 0 02222
Q ss_pred ceEEEEEecCCCCEEEEEECCC--cE-----------EEEcCCCCCCC
Q 001190 1063 YPLVVAAHPLEPNQFAIGLTDG--SV-----------KVMEPSESEGK 1097 (1128)
Q Consensus 1063 ~~~~~~~~p~~~~~l~s~~~dg--~i-----------~iWd~~~~~~~ 1097 (1128)
...++..+| |+++|+++..-. .+ .++|++.++++
T Consensus 389 ~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 389 TVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp ETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 222345567 688777765433 23 77888776654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-10 Score=122.78 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=113.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
++..+++++.||.|..||..+|+.+-. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999987654 333 4566666777887 677888999999999 78988777654422
Q ss_pred CeEEEeccCCC-CccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
... ..++.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 111111 33578889999999999999988887766543 2345678888888764 789999999999
Q ss_pred ceeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9877665321 1222333332 5678889999999999999998887764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=0.00029 Score=83.34 Aligned_cols=481 Identities=8% Similarity=-0.031 Sum_probs=242.9
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 443 (1128)
....|+.-++........ .+...-..+..++|++.+..|..+. ..+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 567888888875431110 1222344678999999777776665 467898999876532111
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEE-eccCcEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST-AIDGKIK 521 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~ 521 (1128)
.+..-......+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.+. +|.++++- +..+.|.
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIE 153 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEE
Confidence 12223356889999997665 5566667789999997776654443 33445677888664 23344443 1245676
Q ss_pred EEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+++.................+++++++..|+.+-. +.+.|...|+..........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6677654444444445567899999998888877643 467899998875444333322211 2334666544 555
Q ss_pred EEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEE-cCCCCEEE---EE---EcCCcEEEEEcccCccccccccCCcc
Q 001190 602 AVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLA---VT---TADNGFKILANAIGLRSLRAVENPPF 673 (1128)
Q Consensus 602 ~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~---~~---~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1128)
.+. ..+.|...|..+++....+.... .....+.+ +|..+-.. +. +.-..+.+.........-....+...
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l 305 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL 305 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB
T ss_pred EecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee
Confidence 554 67889999998887655543221 12233332 22100000 00 00001111110000000000000000
Q ss_pred ccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCcee
Q 001190 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1128)
Q Consensus 674 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 753 (1128)
......+. .....+|+.+.. +.|+..++.. ....
T Consensus 306 --~~d~~~C~--~~~~~~Ll~~~~--------------------------------------~~i~~i~l~~----~~~~ 339 (619)
T 3s94_A 306 --LENGKTCK--DGATELLLLARR--------------------------------------TDLRRISLDT----PDFT 339 (619)
T ss_dssp --CTTSSCBC--SSCSEEEEEEES--------------------------------------SCEEEEESSS----TTCC
T ss_pred --cccCcccC--CCCceEEEEEcc--------------------------------------cceEEEecCC----Cccc
Confidence 00000000 000011110000 1111111110 0000
Q ss_pred EEEecCCCCCcccEEEEEEecCcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCC
Q 001190 754 LVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (1128)
Q Consensus 754 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1128)
.+.++. .....+.+++|.+.+..|+.+. ..+.|+.++...... ...+.. .-.
T Consensus 340 ~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-----------------------~~v~~~--~~~ 392 (619)
T 3s94_A 340 DIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-----------------------QFVVTA--QIA 392 (619)
T ss_dssp CEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECS--SCS
T ss_pred eeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-----------------------EEEEEC--CCC
Confidence 001110 0234577899998665555554 466777665432110 000000 223
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEecccceeee
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~ 909 (1128)
....+++...++.|..+. .+.|.+.++........+...-.....+++.|..|.+..+-. ..+.|...+++......
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~ 472 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV 472 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence 466899988676666665 578999998755433333334456889999994465555542 23567766665332222
Q ss_pred cccccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCc
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWE 948 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~ 948 (1128)
.....-...++|++.+++..|..+ +..+.|...+++...
T Consensus 473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 222233457799999876666655 445778888887543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-06 Score=92.34 Aligned_cols=202 Identities=8% Similarity=-0.013 Sum_probs=133.7
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.+..++++++++.|..+. .+.|.+++..+......+.........+++++.++.++++...++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999887777765 678999999876544434333356889999984455666666778999999874332212
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 985 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 985 (1128)
..........++++|++..|..+.. .+.|..++++.... ..+ .. . .......+++++++..|.+++ .+.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~-~~---~-~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RIL-AQ---D-NLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEE-EC---T-TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEE-EE---C-CCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 2212245689999997665544443 36788888865322 111 11 1 114578899999988877765 678
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeC
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
|.+++............ ......+++ |+..|+.+. ..+.|.++|..+++.+..+.
T Consensus 191 I~~~~~~g~~~~~~~~~----~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG----LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEEC----CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCceEEEecC----CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 99999875443222221 233456655 456666655 56899999999999988886
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-06 Score=88.01 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=145.3
Q ss_pred cceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
..+..++|+|++..|..+. .++.|.+++.+++.... .+.........+++.+++.. +.++....+.|.+++.+|.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776666554 56889999998754322 12222346789999998664 4556666789999996565
Q ss_pred eEEEecC-CCCCeEEEeccCCCCccEEEEEec---cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 486 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
....+.. .......+++++. +..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4433322 2245678888663 345544443 368888887654433333233456889999999888777654
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+.+.|.++|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 47889999997655444433321 23445554 55666665 56899999999999888876432 223578888887
Q ss_pred CC
Q 001190 641 GN 642 (1128)
Q Consensus 641 ~~ 642 (1128)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-06 Score=106.07 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=114.8
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------cEEEEecccceeeecccc--cc-------cCeeEEEEcCCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDS-------------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 928 (1128)
.+++++ +..++..++.++ .|.-+|..+|+.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 667777787766 399999999998876653 22 2333333344665
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEee------cC---C--------C------------C-CCCccEEEEcCCC
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHI------PA---G--------K------------T-PTGDTRVQFNADQ 975 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~------~~---~--------~------------~-~~~v~~v~~s~d~ 975 (1128)
.++.++.+|.+.++|..+|+.+....... .. + . . ...-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68889999999999999998763332110 00 0 0 0 0011237888887
Q ss_pred CEEEEE-------------------------------------ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeC
Q 001190 976 VRMLVV-------------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018 (1128)
Q Consensus 976 ~~l~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~d 1018 (1128)
.++++. .++.|..||..+++.+-..... .+.....+...
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~ 468 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTA 468 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEET
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeC
Confidence 776641 1277999999999987665542 33334456667
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|.++++++.||.+++||.++|+.+..+..
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCcccchhhhhhcChhheEecC
Confidence 88999999999999999999999998874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-07 Score=92.44 Aligned_cols=202 Identities=12% Similarity=0.056 Sum_probs=141.6
Q ss_pred CeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 833 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999976555544 46899999999999988763222 22345554 4466666667899999999999998
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLA 987 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~ 987 (1128)
.++..-... ...+++||+.|+.+..++.|.++|..+.+....+..... +........+.|. +|+..+.. .++.|.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 888532122 244566888777666788999999999887776665432 1111345678888 77544444 378999
Q ss_pred EEecCCcccccccccCC----------CCCCCeEEEEEeeCCCEEEE-EecCCcEEEEecCCCc
Q 001190 988 IYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg~~l~t-~~~dg~i~vwd~~~~~ 1040 (1128)
+.|..+++.+..+.... ........++|+|+++.+++ +...+.|++-++....
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999999877765420 00235689999999886665 5578889888886643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-06 Score=103.50 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=86.5
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe-----------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 46777788888999999888888877544221 011222 244566655 3889999999999998
Q ss_pred eEeccccCC---cee-EEEEeCCCCEEEEEEC------CCcEEEEECCCCeeeEEEecCCCC------------------
Q 001190 578 RTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL------------------ 629 (1128)
Q Consensus 578 ~~~~~~~~~---~v~-~~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (1128)
..+...... .+. ...+ .+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 887653210 111 1111 1345666543 589999999999998887642110
Q ss_pred -----------CCcceEEEcCCCCEEEEEEcCCc
Q 001190 630 -----------PNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 630 -----------~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
.....+++.|+..++++++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124677777778887776653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-07 Score=90.97 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred ceEEEEeeCCCC--CeeEEEEcCCCCCEEEEEeC--CCcEEEEecccceeeecccccc-cCeeEEEEcCCCCEEEEEcCC
Q 001190 862 FKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD 936 (1128)
Q Consensus 862 ~~~~~~~~~~~~--~v~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~~~D 936 (1128)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 35566665 443 357999999 6766665543 6799999999999888764221 1223455552 3445556678
Q ss_pred CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCC--CCCCeEEE
Q 001190 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCA 1013 (1128)
Q Consensus 937 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~l 1013 (1128)
+.+.++|..+++.+..+... . . ....+++||+.++++. ++.|.++|..+.+.+..+..... .-..++.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g--~----~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ--M----K--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC--S----S--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC--C----C--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 99999999998877665433 1 1 1244667888777765 78899999999888877765321 01246788
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.|. ||+..+....++.|.+-|..+++.+..+......... .-.+....-+..++|+|+...+++++...+++.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 7765444546889999999999999998732100000 00011123568999999656678888899999998887
Q ss_pred CCC
Q 001190 1093 ESE 1095 (1128)
Q Consensus 1093 ~~~ 1095 (1128)
+.+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.74 E-value=0.0018 Score=79.76 Aligned_cols=572 Identities=12% Similarity=0.061 Sum_probs=298.3
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceee-cccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
...|.+|.-..+|..- .|+.+| +..||-.. .+..... ......|.++.-..+|. |..|+.+ -+..+| .+
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~-Gl~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDN-GILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETT-EEEEEETTT
T ss_pred cceEEEEEECCCCCEE-EEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCC-CeEEEeCCC
Confidence 5679999988888544 456777 55666322 1111000 11234688888877775 4455544 478899 55
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee----cCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
++...........|.++.. .++ .|..++.+ -+..+|..+....... ......|.++....+|...+..
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt--- 163 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT--- 163 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE---
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe---
Confidence 4322211112234666653 233 56666655 5777887654432210 1223468888888888766543
Q ss_pred cCCCceEEEEeCCCCceeeEe-ccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 560 KDGDSFLVEWNESEGTIKRTY-AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
.+-+..++..+++..... ... ....|.++....++..|..|+. +.+..+|..+++........ ...|.++
T Consensus 164 ---~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i 237 (758)
T 3ott_A 164 ---YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSL 237 (758)
T ss_dssp ---TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEE
T ss_pred ---CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEE
Confidence 234778887776543211 111 1123677777777776666664 56888998877643322111 1247788
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEcccCccccccccC---CccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN---PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
....+|.+.+ |+. +-+.+++..++. +..... .........|.++....+|...+.+..
T Consensus 238 ~~d~~g~lWi-gT~-~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~--------------- 298 (758)
T 3ott_A 238 ALDGNGDLLA-GTD-NGLYVYHNDTTP--LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDY--------------- 298 (758)
T ss_dssp EECTTCCEEE-EET-TEEEEECCTTSC--CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESS---------------
T ss_pred EEcCCCCEEE-EeC-CceeEEecCCCc--EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCC---------------
Confidence 8777776655 444 457777765542 111111 111122334666666665554432211
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec--CCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
| +.++.. .......... ........|.++....+|...+. +.+|. ..
T Consensus 299 -----------------------G-l~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~ 347 (758)
T 3ott_A 299 -----------------------G-ISLSRY-----NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGL-IR 347 (758)
T ss_dssp -----------------------S-EEEECC-----CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEE-EE
T ss_pred -----------------------c-cccccc-----CCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcc-ee
Confidence 1 100000 0001111100 00112346888888888875554 45553 33
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee-
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM- 869 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~- 869 (1128)
++-..... . ....+...... ..+ ....|.++.-..+|++.+.. ++.|..||..+++...-..
T Consensus 348 ~~~~~~~~----~-----~~~~~~~~~~~---~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~ 410 (758)
T 3ott_A 348 FTDPAGER----H-----DAIWYRMGDKT---YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIV 410 (758)
T ss_dssp ESCTTSSC----C-----CCEEECTTCSS---SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEE
T ss_pred eccccccc----c-----eeEEeccCCcC---CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecC
Confidence 43211000 0 00011100000 000 23568899888888876654 6679999998876543221
Q ss_pred C-----CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc------eee--ecc---cc-cccCeeEEEEcCCCCEEEE
Q 001190 870 S-----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD------EVK--SKL---KG-HQKRITGLAFSTSLNILVS 932 (1128)
Q Consensus 870 ~-----~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~------~~~--~~l---~~-h~~~V~~l~~s~d~~~l~s 932 (1128)
. ....|.++...+ ++. |-.|+..+-|.++|..+. ... ..+ .+ ....|.++...++|.+.+.
T Consensus 411 ~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 488 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVL 488 (758)
T ss_dssp CCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred CCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEE
Confidence 1 123578888776 555 445776667888886531 111 111 11 1235889999999988774
Q ss_pred EcCCCcEEEEECCCCcccceeEEeecCCCC-CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeE
Q 001190 933 SGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPIS 1011 (1128)
Q Consensus 933 ~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 1011 (1128)
++..+-|..+|..+++... .. ..... ...+.++....+|.+.+.+ .+.+..|+..++.... +....-....|.
T Consensus 489 ~~t~~Gl~~~d~~~~~~~~---~~-~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~ 562 (758)
T 3ott_A 489 LYNNKGIDKINPRTREVTK---LF-ADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEIL 562 (758)
T ss_dssp ETTCSSEEEEETTTTEEEE---EC-TTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEE
T ss_pred ccCCCCcEEEeCCCCceEE---ec-CCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEE-ecccCCCccceE
Confidence 4444558888987754321 11 11111 1356678888888877655 4678899877654322 211101145678
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
++... +|+ |..++..| |..||..+.+...--. +.. .+ ....+... ...|..|+.+|-+. +++
T Consensus 563 ~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~~~~-----~~~-------~~-~~~~~~~~-~G~l~fG~~~Gl~~-f~p 624 (758)
T 3ott_A 563 SMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQQNM-----TNK-------RF-TSLLFDPK-EDCVYLGGADGFGI-SHS 624 (758)
T ss_dssp EEEEE-TTE-EEEEESSC-EEEEETTTCCEEEC-------CCC-------CC-SEEEEETT-TTEEEEECBSEEEE-EEC
T ss_pred EEEEC-CCC-EEEECCCC-eEEEcCCCceeEEecC-----CCC-------ce-eeeEEECC-CCcEEEecCCceEE-ECh
Confidence 88763 665 45555555 8889998876543211 111 11 12334332 45677778888554 566
Q ss_pred CC
Q 001190 1092 SE 1093 (1128)
Q Consensus 1092 ~~ 1093 (1128)
..
T Consensus 625 ~~ 626 (758)
T 3ott_A 625 NL 626 (758)
T ss_dssp --
T ss_pred hh
Confidence 53
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-06 Score=98.32 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=98.6
Q ss_pred cEEEEecccceeeecccc--c--------ccCeeEEEEcCCCC---EEEEEcCCCcEEEEECCCCcccceeEEeecC---
Q 001190 896 TIHIYNVRVDEVKSKLKG--H--------QKRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPA--- 959 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~--h--------~~~V~~l~~s~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~--- 959 (1128)
.|..+|..+|+.+-.++. | ..++ -+....+|+ .++.++.+|.+.++|..+|+.+.........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 599999999988766542 2 1222 122334674 5778899999999999999876554322100
Q ss_pred ----CCCC--------------------------CCccEEEEcCCCCEEEEEe---------------------------
Q 001190 960 ----GKTP--------------------------TGDTRVQFNADQVRMLVVH--------------------------- 982 (1128)
Q Consensus 960 ----~~~~--------------------------~~v~~v~~s~d~~~l~~~~--------------------------- 982 (1128)
.... ..-..++++|+..++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 0000 0013468888877776642
Q ss_pred -----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 -----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 -----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
++.+..||..+++.+-.+... ..+....+...+..+++++.||.|+.||.++|+.+.++..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 367999999999887665542 2233333445677788899999999999999999998873
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-06 Score=96.77 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=106.4
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEecccceeeecccccc----------cCeeEEEEc-CCC--
Q 001190 877 FLAFHPQDNNIIAIGTED----------------STIHIYNVRVDEVKSKLKGHQ----------KRITGLAFS-TSL-- 927 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 927 (1128)
.+++.+ ...++..+..+ +.|.-+|.++|+.+-.++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456666 55566666654 379999999999886654321 1221 2222 567
Q ss_pred -CEEEEEcCCCcEEEEECCCCcccceeEEee----------cCCC-----------------------CCCCccEEEEcC
Q 001190 928 -NILVSSGADAQLCVWSIDTWEKRKSVTIHI----------PAGK-----------------------TPTGDTRVQFNA 973 (1128)
Q Consensus 928 -~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~v~~s~ 973 (1128)
+.++.++.+|.+.++|..+|+.+....... ..+. -...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 467778999999999999998765543211 0000 001113467777
Q ss_pred CCCEEEEE----------------------------------------ecCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 974 DQVRMLVV----------------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 974 d~~~l~~~----------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
+..++++. ..+.+..||+.+++.+-..... .+...-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 76666542 1257888888888876655432 122222
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+.-.+.+++.++.||.++.||.++|+.+.++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 2344677888899999999999999999998873
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-06 Score=100.12 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=56.0
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
+|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+|+.+..+.... . ....-+.+..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~--~---~~~~p~~~~~ 516 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS--G---GIGSPMTYSF 516 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--C---CCSCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC--C---cEeeeEEEEE
Confidence 578999999999888776532 333333333345677779999999999999999876655431 1 1122345667
Q ss_pred CCCEEEEEe
Q 001190 974 DQVRMLVVH 982 (1128)
Q Consensus 974 d~~~l~~~~ 982 (1128)
+|+.++...
T Consensus 517 ~G~~yv~~~ 525 (571)
T 2ad6_A 517 KGKQYIGSM 525 (571)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 888776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=87.77 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=128.5
Q ss_pred eeEEEeccCCCeEEEEe-CC--eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 834 VPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
...+.|+ ++.++.+.+ +| .|+++|+++++.+.++.... ......+.+.++++.+....++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 666655555 55 79999999999998887533 3333323332455666666789999999999999988
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~ 989 (1128)
+.... .-.. +++|++.|+....++.|.++|..+.+.+..+.... .+.....++.+.|. +|+..+.. .++.|.+.
T Consensus 123 i~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 123 FNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 87532 2233 44577777766667889999999988777766542 11111334557776 67655444 47899999
Q ss_pred ecCCcccccccccCC---------CCCCCeEEEEEeeCCCEEEEEe
Q 001190 990 DASKMERIRQWTPQD---------ALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~---------~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
|..+++.+..+.... .-..-.+.|+|+|+++.|++.+
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 999999877665421 0123568999999988888776
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-06 Score=85.51 Aligned_cols=195 Identities=9% Similarity=0.076 Sum_probs=130.5
Q ss_pred ccEEEEEEecCcceEEEeeccc--eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.-..++.|+ ++....+++.+| .|+.+|+ .+|+++.... .........+.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~----------------------~Tgkv~~~~~----l~~~~FgeGit~~ 95 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDI----------------------ESGKTLQQIE----LGKRYFGEGISDW 95 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECT----------------------TTCCEEEEEE----CCTTCCEEEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEEC----------------------CCCcEEEEEe----cCCccceeEEEEe
Confidence 345889998 676666666665 6776654 4444333221 1223333333345
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ----- 915 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~----- 915 (1128)
++.|.... ++.+.+||..+++.+.++...... ..++ + |++.|+....+++|.++|..+.+.+..+....
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 66665555 789999999999999998753322 2333 4 55656555567889999999988887765422
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEEEEEecCeEEEE
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLVVHETQLAIY 989 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~ 989 (1128)
..++.+.|. +|+..|..-.+..|.+.|..+|+.+..+...... .........++|+|+++.|++....--++|
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 234567776 7777777777889999999999988877764221 111246689999999999888776655555
Q ss_pred ec
Q 001190 990 DA 991 (1128)
Q Consensus 990 d~ 991 (1128)
.+
T Consensus 251 ev 252 (262)
T 3nol_A 251 EI 252 (262)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-06 Score=96.68 Aligned_cols=250 Identities=13% Similarity=0.087 Sum_probs=152.9
Q ss_pred EEeccCCCe----EEEEe-CCeEEEEECCCceEEEEeeCCCC----Cee-EEEEcCCCCCEEEEEe------CCCcEEEE
Q 001190 837 IALSKNDSY----VMSAT-GGKISLFNMMTFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGT------EDSTIHIY 900 (1128)
Q Consensus 837 ~~~s~dg~~----la~~~-dg~i~vwd~~~~~~~~~~~~~~~----~v~-~l~~s~~d~~~lasg~------~dg~v~iw 900 (1128)
++++|++.. |++++ ++.|..+|..+|+.+........ .+. ...+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877653321 222 22222 444 44444 38999999
Q ss_pred ecccceeeecccccccC-------------------------------------e-eEEEEcCCCCEEEEEcCC------
Q 001190 901 NVRVDEVKSKLKGHQKR-------------------------------------I-TGLAFSTSLNILVSSGAD------ 936 (1128)
Q Consensus 901 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~~~D------ 936 (1128)
|..+|+.+-++...... + ..+++.++..+++.+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999887655421110 0 134566677777766654
Q ss_pred ----------CcEEEEECCCCcccceeEEeecCCC---CCCCccEEEEc-CCC---CEEEEE-ecCeEEEEecCCccccc
Q 001190 937 ----------AQLCVWSIDTWEKRKSVTIHIPAGK---TPTGDTRVQFN-ADQ---VRMLVV-HETQLAIYDASKMERIR 998 (1128)
Q Consensus 937 ----------g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~v~~s-~d~---~~l~~~-~d~~i~v~d~~~~~~~~ 998 (1128)
+.|..+|.++|+.+........+.. ......-+... .+| ..++.+ .+|.++++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3799999999987655433211110 00111112222 567 345545 48999999999998865
Q ss_pred ccccCC----------CCCCC--------------------------eEEEEEeeCCCEEEEEe----------------
Q 001190 999 QWTPQD----------ALSAP--------------------------ISCAVYSCNSQLVFATF---------------- 1026 (1128)
Q Consensus 999 ~~~~~~----------~h~~~--------------------------v~~l~~s~dg~~l~t~~---------------- 1026 (1128)
...... ....+ -..++|+|+.+++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 543211 00111 13467777777665531
Q ss_pred -----------------------cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001190 1027 -----------------------CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1083 (1128)
Q Consensus 1027 -----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d 1083 (1128)
.+|.|.-||+.+|+.+.+..... .....++.. .+.+++.++.|
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~t-----agg~vf~gt~d 493 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMAT-----AGDLVFYGTLD 493 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEEE-----TTTEEEEECTT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---------CccCcceEe-----cCCEEEEECCC
Confidence 34789999999999888775210 001111211 46788889999
Q ss_pred CcEEEEcCCCCCCCcccCCC
Q 001190 1084 GSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1084 g~i~iWd~~~~~~~w~~~~p 1103 (1128)
|.|+.||..+|+..|....|
T Consensus 494 g~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 494 GYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp SEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEECCCCCEEEEeeCC
Confidence 99999999999999988544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-05 Score=90.53 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=97.6
Q ss_pred CcEEEEecccceeeecccc--cc--------cCeeEEEEc-CCCC---EEEEEcCCCcEEEEECCCCcccceeEEeec--
Q 001190 895 STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFS-TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP-- 958 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-- 958 (1128)
+.|.-+|..+|+.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999998876642 31 1221 1222 4674 788899999999999999987655443210
Q ss_pred ----------------CCCC---------C------------CCccEEEEcCCCCEEEEEe-------------------
Q 001190 959 ----------------AGKT---------P------------TGDTRVQFNADQVRMLVVH------------------- 982 (1128)
Q Consensus 959 ----------------~~~~---------~------------~~v~~v~~s~d~~~l~~~~------------------- 982 (1128)
.... . ..-..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0000 0 0012457777765555421
Q ss_pred ---------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 ---------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 ---------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+.|..||+.+++.+-..... .++..-.+.-.|.++++++.||.++.||.++|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 467999999999887655432 2222222334577888899999999999999999998884
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-06 Score=85.62 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=128.2
Q ss_pred CeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeE--EEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
....+.|+ ++.++.+.+ +|.|+++|+++++.+..+ - ...... +++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34678886 344444444 688999999999998887 2 233433 5554 45666677789999999999999998
Q ss_pred cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEE
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAI 988 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v 988 (1128)
++..- ..-.+++ +|++.|+.+..++.|.++|..+.+.+..+....... .-..+..+.|. +|+..+.. .++.|.+
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-PVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-ECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-ccccccccEEe-CCEEEEEECCCCeEEE
Confidence 88753 3334444 567877777778899999999998877776653211 11345667777 77654444 3789999
Q ss_pred EecCCcccccccccC----------CCCCCCeEEEEEeeCCCEEEEEe
Q 001190 989 YDASKMERIRQWTPQ----------DALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~----------~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
.|..+++.+..+... ..-..-.+.|+|+|+++.|++.+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999887665432 11134678999999877666655
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-05 Score=85.67 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=149.3
Q ss_pred CeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeC-C-------------------CCCeeEEEEcCCCCCEEEEE
Q 001190 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-P-------------------PPASTFLAFHPQDNNIIAIG 891 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~-------------------~~~v~~l~~s~~d~~~lasg 891 (1128)
...+++++++|+++.++. ++.|..|+..+++.. .+.. . ...+..+++.+.+++++ ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 356788999998666665 788999998765443 2211 0 12478899986345544 45
Q ss_pred eCCCcEEEEecccceeeeccc----c-cccCeeEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCCc
Q 001190 892 TEDSTIHIYNVRVDEVKSKLK----G-HQKRITGLAFST-SLNILVSSGA-----------------DAQLCVWSIDTWE 948 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~~~-----------------Dg~i~iwd~~~~~ 948 (1128)
...+.|..+|..+++.. .+. + .......+++.+ +|+++++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 44556888887766422 221 1 113467899999 9987776532 3678888887765
Q ss_pred ccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
...... .. .....++++++|+.|.+++ .+.|.+|++..... ...+... .. ...+++.++|++.++
T Consensus 177 ~~~~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 177 TTLLLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEEEEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEE
T ss_pred EEEecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEE
Confidence 322211 11 3456799999999777764 57899999875321 1111111 23 788999999996666
Q ss_pred Eec----------CCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1025 TFC----------DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1025 ~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
... .+.|.++|. .|+.+..+....... ...+..+++. ++.++++....+.|..+++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~--------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA--------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT--------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc--------cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 544 467888987 477777665322110 1223455553 4677777778889999987644
Q ss_pred C
Q 001190 1095 E 1095 (1128)
Q Consensus 1095 ~ 1095 (1128)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.9e-05 Score=89.48 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
+|.|.-||+.+++.+-+...+ .++..-.+...+.+++.++.|+.++.||.++|+.+..+.... + ....-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~--g---~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS--G---IVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--C---CCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC--C---cccCceEEEE
Confidence 688999999999887666533 222222222246678889999999999999999877665431 1 1222366778
Q ss_pred CCCEEEEE
Q 001190 974 DQVRMLVV 981 (1128)
Q Consensus 974 d~~~l~~~ 981 (1128)
+|+..++.
T Consensus 539 ~G~qYv~~ 546 (582)
T 1flg_A 539 DGEQYLGV 546 (582)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 88765553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0062 Score=74.94 Aligned_cols=527 Identities=11% Similarity=0.062 Sum_probs=271.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|.++....+|. + -.|+.+| +..||..+++.... .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-L-YMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-E-EEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-E-EEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35699999888886 3 3455554 78899876542210 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCCcceeceee-c-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC------C
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQI-D-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH------E 494 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h------~ 494 (1128)
|+.+ .+..+|..+++... +... . -....|.++....+|. +. .|+. +-+..+| .+++ ...+... .
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~ 190 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTY-NGLCRYIPSNGK-FEGIPLPVHSSQSN 190 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EE-EEET-TEEEEEETTTTE-EEEECCCCCTTCSS
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EE-EEeC-CCHhhCccCCCc-eEEecCCCcccccc
Confidence 6665 58888987754321 1000 0 1134688888887887 33 3443 3577888 4443 3222211 1
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
..|.++... .++..|..|+. +-+..++..+.............|.++....+|.+.+.. ++-+.+++..++
T Consensus 191 ~~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~ 261 (758)
T 3ott_A 191 LFVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTT 261 (758)
T ss_dssp CCEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTS
T ss_pred ceeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCC
Confidence 247777653 24455566664 457778766543322212223468888888888766543 234788887766
Q ss_pred ceeeEec------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-----cCCCCCCcceEEEcCCCCE
Q 001190 575 TIKRTYA------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 575 ~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~sp~~~~ 643 (1128)
+...... ......|.++....+|. |-.|+..| +.++... .. ..... .......|.++....+|.+
T Consensus 262 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 262 PLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp CCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred cEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 5432211 11223577777776665 44555556 5544332 21 11111 0111235677777777765
Q ss_pred EEEEEcCCcEEEEEcccCcc-ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
.+ |+.+| +..++..++.. .... +.....
T Consensus 338 Wi-Gt~~G-l~~~~~~~~~~~~~~~-----------------~~~~~~-------------------------------- 366 (758)
T 3ott_A 338 WF-GGANG-LIRFTDPAGERHDAIW-----------------YRMGDK-------------------------------- 366 (758)
T ss_dssp EE-EETTE-EEEESCTTSSCCCCEE-----------------ECTTCS--------------------------------
T ss_pred EE-eeCCc-ceeecccccccceeEE-----------------eccCCc--------------------------------
Confidence 54 44444 44444332100 0000 000000
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (1128)
.. ......|.++....+|...+. +. +-+..|+......
T Consensus 367 --------------------------~~----------~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~---- 404 (758)
T 3ott_A 367 --------------------------TY----------PLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQF---- 404 (758)
T ss_dssp --------------------------SS----------CCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEE----
T ss_pred --------------------------CC----------CCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcE----
Confidence 00 002245677777777774443 33 4566665432110
Q ss_pred ceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCc-----eEE---EEee---C-
Q 001190 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S- 870 (1128)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~~---~- 870 (1128)
+.+...... .......|.++...++|++.+...++.|.++|..+. ... ..+. +
T Consensus 405 --------~~~~~~~~~-------~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 405 --------IHYNIVDNT-------GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp --------EEEEEECCC---------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred --------EEeecCCCc-------CCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 001000000 000234588888888887666554667888886531 111 1211 1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-c--cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-G--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~--h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
....|.++...+ ++.+.+.++..+-|..+|..+++...... . ....+.++....+|.+.+.. .+| +..++..++
T Consensus 470 ~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~ 546 (758)
T 3ott_A 470 SGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDE 546 (758)
T ss_dssp SCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--C
T ss_pred ccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCC
Confidence 223588999888 77776644445568889988776443211 1 13467888888888877644 445 888887765
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEe-eCCCEEEEEe
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-CNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~t~~ 1026 (1128)
+.... . ..+-....+.++... +|. |-.+....+..++..+.+... +... ...+....+. +||+ |+.|+
T Consensus 547 ~~~~~-~---~~gl~~~~i~~i~~~-~g~-lWi~t~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~ 615 (758)
T 3ott_A 547 SQQSI-S---FGSFSNNEILSMTCV-KNS-IWVSTTNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGG 615 (758)
T ss_dssp CCCBC-C---CCC---CCEEEEEEE-TTE-EEEEESSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEEC
T ss_pred ceEEe-c---ccCCCccceEEEEEC-CCC-EEEECCCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEec
Confidence 43211 1 111112456777664 554 444556678899987665422 2111 2233344444 4565 56677
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
.+| +..++.+
T Consensus 616 ~~G-l~~f~p~ 625 (758)
T 3ott_A 616 ADG-FGISHSN 625 (758)
T ss_dssp BSE-EEEEEC-
T ss_pred CCc-eEEEChh
Confidence 777 4555554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.8e-06 Score=99.36 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=132.9
Q ss_pred cEEEEEEe-CCCCcEEEEeeccC----eEEEEEccCC-ceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 346 ~V~~v~fs-pdg~~lla~gs~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
.+...+|| |||++++.+-+.+| +|.++|+.+| +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 68899999 99996554443333 5999999988 63211 011 1245689999999
Q ss_pred EEEEEeCC-----CeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEec-CCCeEEEEe-cCC--Ce-EE
Q 001190 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSG--RK-LF 488 (1128)
Q Consensus 420 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s-~d~~i~vWd-~~g--~~-~~ 488 (1128)
.|+....+ ..|.++++.++...... .+. .+......+.|+|||+.+++.+.. ....|.++| .++ .. +.
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 25888888776432111 122 223446688999999964333332 234688888 443 23 13
Q ss_pred Ee-cCCCCCeEEEeccCCCCccEEEEEecc--C--cEEEEecCCCCceee-ecCCCC--eEEEEEEcCCCCeEEEeeecc
Q 001190 489 NF-EGHEAPVYSICPHHKENIQFIFSTAID--G--KIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 489 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~~wd~~~~~~~~~-~~~~~~--~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+ .+..+...++.|+. ++.+++....+ + .|..+++........ +..+.. .+..+.+ +++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 33 33445556655432 33344444443 3 455556554222222 223333 4445554 4566665543 2
Q ss_pred CCCceEEEEeC-------CCCceeeEeccccCCceeEEEE------eCCCCEE-EEEEC---CCcEEEEECCCCee
Q 001190 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF------DTTQNHF-LAVGE---DSQIKFWDMDNVNI 619 (1128)
Q Consensus 561 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l-~~~s~---dg~i~iwd~~~~~~ 619 (1128)
++...|.++++ .+++....+..... ...+.+ ++++..+ ++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456777775 34441333332211 222344 3455443 44332 25678888877764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.8e-06 Score=82.03 Aligned_cols=194 Identities=8% Similarity=-0.040 Sum_probs=130.1
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
....++.|+ ++...++.+.+|.|+.+|+ .+++.+...+. ....-..+++ +++
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~----------------------~Tgkv~~~~l~---~~~FgeGit~--~g~ 106 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSL----------------------ESAQPVWMERL---GNIFAEGLAS--DGE 106 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCS----------------------SCSSCSEEEEC---TTCCEEEEEE--CSS
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEEC----------------------CCCcEEeEECC---CCcceeEEEE--eCC
Confidence 445788887 4566667777788887754 44444433211 1111223444 455
Q ss_pred eEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----cC
Q 001190 845 YVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----KR 917 (1128)
Q Consensus 845 ~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 917 (1128)
.|.... ++.+.+||..+++.+.++..... -..++ + |++.|+.+..+++|.++|..+.+.+.++.... ..
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 555554 89999999999999999885332 23444 4 56666666678999999999998887765422 23
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeec-------CCCCCCCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP-------AGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
++.+.|. +|+.+|....+..|.+-|..+|+.+..+.+... ..........||++|+++.|++....--++|.
T Consensus 183 lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~e 261 (268)
T 3nok_A 183 INELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFE 261 (268)
T ss_dssp EEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEE
T ss_pred ccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEE
Confidence 4667777 777777776788999999999998888876521 11222567899999998887776655444444
Q ss_pred c
Q 001190 991 A 991 (1128)
Q Consensus 991 ~ 991 (1128)
+
T Consensus 262 v 262 (268)
T 3nok_A 262 V 262 (268)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=97.71 Aligned_cols=276 Identities=9% Similarity=0.040 Sum_probs=153.7
Q ss_pred EEEEeC-CCCcEEEEeeccC-----------eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 349 ~v~fsp-dg~~lla~gs~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
++++.| +|+ +++.|+.+. .+.+||..+++.... ..+...+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeC----------------cccCCCCCCccccccCCC
Confidence 667788 787 777776532 588899888764321 011122334445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEccCCCcceeceeecccccc-eeEEEEecCCCeEEEEEec-CC-----CeEEEEe-cCCCeE
Q 001190 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKL 487 (1128)
Q Consensus 417 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~-v~~l~fs~d~~~~~l~s~s-~d-----~~i~vWd-~~g~~~ 487 (1128)
+|+.++.|+. +..+.+||..+++-... ..+ +..+ -.+++..++|+ +++.|+ .+ ..+.+|| .++.-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45799999988653321 112 2222 23456667888 677777 44 5789999 555432
Q ss_pred EEecCCC-CCe----EEEeccCCCCccEEEEEeccC---------cEEEEecCCCCceeeecCC---------CCeEEEE
Q 001190 488 FNFEGHE-APV----YSICPHHKENIQFIFSTAIDG---------KIKAWLYDTMGSRVDYDAP---------GHWCTTM 544 (1128)
Q Consensus 488 ~~~~~h~-~~v----~~~~~~~~~~~~~l~s~~~dg---------~i~~wd~~~~~~~~~~~~~---------~~~i~~~ 544 (1128)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++
T Consensus 328 -~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 -SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp -EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred -eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 221000 000 00111 12344555565554 4567777665432211111 1112344
Q ss_pred EEcC-CCCeEEEeeeccCC----Cc---eEEEEeCCCCceeeEe--ccccCCceeEEEEeCCCCEEEEEECC--------
Q 001190 545 LYSA-DGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED-------- 606 (1128)
Q Consensus 545 ~~s~-~g~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d-------- 606 (1128)
.|.. +++.+++++..... .. .+.+||..+.+-.... ...........+..++++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 66677776632100 11 6788888776654433 22222223445667899999998854
Q ss_pred ---CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 607 ---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 607 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432221111111234556789999999885
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-05 Score=84.48 Aligned_cols=259 Identities=9% Similarity=0.031 Sum_probs=142.1
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccc-ccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGV 423 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 423 (1128)
...+++++++|+ ++.++..++.|..|+..+++...-. .-..+....+.-.... ........+..+++.+ +|+ |..
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccch-hccccCCCCceEEEcCCCCc-EEE
Confidence 467788999998 5677778899999988765432100 0000000000000000 0000123578999998 554 555
Q ss_pred EeCCCeEEEEEccCCCcceece-eecc-cccceeEEEEec-CCCeEEEEEecC-----------------CCeEEEEe-c
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKVWE-L 482 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~-~~~~-h~~~v~~l~fs~-d~~~~~l~s~s~-----------------d~~i~vWd-~ 482 (1128)
+...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++-.. ++.|..|| .
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 55555688888776532 2111 1111 123478899999 887 4444322 36788889 4
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEE-eccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+++.. .+.........+++++ ++++|+.+ ...+.|..|+++... ....+..... ...++++++|++.++....
T Consensus 174 ~~~~~-~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 174 TKETT-LLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp TTEEE-EEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred CCEEE-EeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence 45432 2221122345678865 66655555 566899999987521 1111111223 7889999999866665320
Q ss_pred c------CCCceEEEEeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 560 K------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 560 ~------~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
. ...+.|..+|. .++.+..+....+ ..+..+++. ++..+++...++.|.++++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 0 01356888886 4777766654432 235555553 444444444677888888753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=80.44 Aligned_cols=188 Identities=11% Similarity=0.110 Sum_probs=128.3
Q ss_pred CCCeeEEEeccCCCeEEEEe-C--CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 831 EEAVPCIALSKNDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
..-...+.|+. +.++.+.+ . +.|+++|+.+++.+..+.-..... -.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466889976 45555544 3 479999999999998886433221 234443 45666677789999999999999
Q ss_pred eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCe
Q 001190 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1128)
Q Consensus 907 ~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 985 (1128)
.+.++... ..-.+++ +|++.|+.+..++.|.++|..+.+.+..+.+... +..-..+..+.+. +|+..+.. ....
T Consensus 97 ~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCCe
Confidence 99888743 3334554 5666666666688999999999887777666531 1111344556655 66655444 4789
Q ss_pred EEEEecCCcccccccccCC----------CCCCCeEEEEEeeCCCEEEEEe
Q 001190 986 LAIYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
|.+.|..+++.+..+.... .-..-.+.|+++|+++.|++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999877655321 1134568999999888777766
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-05 Score=78.21 Aligned_cols=198 Identities=11% Similarity=0.123 Sum_probs=130.5
Q ss_pred CcccEEEEEEecCcceEEEeeccc--eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
......++.|++ +....+.+..| .|+.+|+ .+|+++.... .........+.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~----------------------~tgkv~~~~~----l~~~~fgeGi~ 71 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDL----------------------ETGRILQRAE----VPPPYFGAGIV 71 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEET----------------------TTCCEEEEEE----CCTTCCEEEEE
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEEC----------------------CCCCEEEEEe----CCCCcceeEEE
Confidence 345577999987 55555555543 6777654 4444333211 12222223333
Q ss_pred cCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc---
Q 001190 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ--- 915 (1128)
Q Consensus 841 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--- 915 (1128)
.+++.|.... ++.+.+||..+++.+.++...... ..++ + +++.|..+..++.|.++|..+.+.+.++.-..
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence 3455565554 899999999999999999854332 3444 4 45555555668899999999988887765432
Q ss_pred --cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC-------CCCCCccEEEEcCCCCEEEEEecCeE
Q 001190 916 --KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-------KTPTGDTRVQFNADQVRMLVVHETQL 986 (1128)
Q Consensus 916 --~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~s~d~~~l~~~~d~~i 986 (1128)
..++.+.+. +|+.++....+..|.+.|..+|+.+..+.+..... ........|+++|++..|++....--
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 245566766 67777766677899999999999888887663321 12246789999999988888776555
Q ss_pred EEEecC
Q 001190 987 AIYDAS 992 (1128)
Q Consensus 987 ~v~d~~ 992 (1128)
++|.++
T Consensus 227 ~~~~v~ 232 (243)
T 3mbr_X 227 MLYEIR 232 (243)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 555543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00013 Score=80.11 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=153.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
+..+|.+..+ ..+|+.+..+.|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+
T Consensus 34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3445666666 446666666778888887665544443 34458899999856666667667889999998866533333
Q ss_pred cccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEE
Q 001190 912 KGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLA 987 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~ 987 (1128)
........++++.+.+. ++++-...+.|.+.+++..... .+ . .. .......++++|.+..|..++ . +.|.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-~---~~-~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-L---WQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-E---CT-TCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-E---eC-CCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 32334567899987554 5555566788999998764321 11 1 11 114568999999777777665 3 6788
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
.+++.... ...+.... ......+++++++..|+.+. ..+.|..+|+........+. .....+.+
T Consensus 186 r~~~dG~~-~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~------------~~~~~P~g 250 (349)
T 3v64_C 186 ASSMDGSG-RRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFA 250 (349)
T ss_dssp EEETTSCS-CEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SSCSSEEE
T ss_pred EEeCCCCC-cEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe------------CCCCCceE
Confidence 88876432 22222111 45678999999877777655 46679999987543333232 11234567
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+++. .+.++++-...+.|...+..+++.
T Consensus 251 iav~--~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 251 ITVF--EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEE--CCEEEEecCCCCeEEEEEccCCCc
Confidence 7773 356777777788888888666653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-05 Score=81.31 Aligned_cols=227 Identities=16% Similarity=0.093 Sum_probs=137.1
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCC-eEEEEe-cC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK-LIKVWE-LS 483 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~-~i~vWd-~~ 483 (1128)
.....++|+|+|+++++-..++.|..||.+++ ... . + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45678999999997777667899999998763 222 1 1 2234688999999998 444443 333 577777 66
Q ss_pred CCeEEEecC-CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-e-------c--CCCCeEEEEEEcCCCCe
Q 001190 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-------D--APGHWCTTMLYSADGSR 552 (1128)
Q Consensus 484 g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~g~~ 552 (1128)
|+....... .......++... ++..+++...++.|.++|......... . . ........+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 122234444422 334444444578888887654322111 0 0 111234555 788887
Q ss_pred EEEeeeccCCCceEEEEeCCC-Cce--eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777654 477899999874 332 1122111 134558899999877776678899999975 5543321111222
Q ss_pred CCcceEEEc---CCCCEEEEEEcC
Q 001190 630 PNLPRLRFS---KEGNLLAVTTAD 650 (1128)
Q Consensus 630 ~~v~~v~~s---p~~~~l~~~~~d 650 (1128)
....+++|. |++..|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00011 Score=81.96 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=152.0
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 913 (1128)
..|.+..+ ..+|+.+..+.|+.+++.......... .......++|++.++.++++-...+.|+.+++..+.....+..
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CeECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 34555555 456666666779999987765544443 3456889999975666777767788999999886654333332
Q ss_pred cccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEEEE
Q 001190 914 HQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIY 989 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v~ 989 (1128)
.......+++.+.+. ++++-...+.|.+.+++...... + .. . .......++++|.+..|..++ . +.|..+
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~-l-~~---~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV-L-LW---Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE-E-EC---S-SCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE-e-ec---C-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 334456889987554 44555667788888887543211 1 11 1 114578999999887777765 3 668888
Q ss_pred ecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEE
Q 001190 990 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1068 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1128)
++............ ......|+|+++++.|+.+. ..+.|..+|+........+. .....+.+++
T Consensus 231 ~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~gia 295 (386)
T 3v65_B 231 SMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAIT 295 (386)
T ss_dssp ETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------SSCSSEEEEE
T ss_pred eCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------CCCCCceEEE
Confidence 77543222221111 44578999998877777655 56679999987543333322 1123456777
Q ss_pred EecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1069 AHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1069 ~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+. .+.++++-...+.|..++..+++.
T Consensus 296 v~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 296 VF--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 73 357778877888898888666654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00016 Score=77.93 Aligned_cols=237 Identities=9% Similarity=0.035 Sum_probs=140.2
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
.+.+....+........++|+|+|+ ++++-..++.|..||...+ ... . . .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeE
Confidence 4455666666557789999999998 6677667889999987643 221 0 1 112468899
Q ss_pred EEccCCCEEEEEeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEE
Q 001190 413 AWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1128)
Q Consensus 413 ~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~ 488 (1128)
+++|+|+++++..... .|..+|..+++... +..+. .......++..+++. .+++-..++.|.++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999766654432 46667777766422 21221 122234555555554 556666688999999 4432 121
Q ss_pred Eec---------CCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 489 NFE---------GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 489 ~~~---------~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
... +.-...+.+ ++ +++.| ++-...+.|..++++.... ...+. .......++++++|++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred EECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEE
Confidence 110 111123444 33 44444 4555678999999875211 11111 1123556889999986665
Q ss_pred eeeccCCCceEEEEeCCCCceee--EeccccCCceeEEEEe---CCCCEEEEEECC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~s~d 606 (1128)
.. +.+.|.++|.. ++... .+.... ....+++|. ++++.|++++..
T Consensus 229 ~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 TH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred eC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 44 36789999975 65532 232221 257789998 788888777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00082 Score=73.64 Aligned_cols=248 Identities=13% Similarity=0.015 Sum_probs=151.0
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
.+..+|.+..+++. ++++ ....|+..++....... +.. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~-------------------~~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEE-------------------EEC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEE-------------------eec-CCCceEEEEEeccccEEEE
Confidence 34556777777543 4443 44567777776543221 122 2345789999987666665
Q ss_pred Ee-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEe
Q 001190 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1128)
Q Consensus 424 ~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~ 501 (1128)
.. ..+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 57889999988765322 12222345678999986664 4556666789999996666544433 3334578888
Q ss_pred ccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+. ++.++++-... +.|...+++.................+++++++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8764 34455554445 77888887654443333334456889999998888777643 4678999998754333333
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.... .....+++. .+..+++-...+.|..++..+++....+.
T Consensus 242 ~~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 234556663 33333344466778888866666655554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0021 Score=69.75 Aligned_cols=281 Identities=9% Similarity=0.010 Sum_probs=149.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.....+.+|.|.+++. .+++| ..|.| +...+.|+.-.. .. .........+.+|+|+| +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~--------~~-------~~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEP--------RT-------LVLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEE--------CC-------CCCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeE--------CC-------CCCCCCCccEEEEEecC-CeEE
Confidence 4455799999998877 56655 56654 333333432110 00 00112345789999986 4444
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeE-EEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-~~~~~h~~~v~~~ 500 (1128)
+ ++.++.|.. ..+.|+.-........+.+.+..+.+.+++. .++.+. ++.|..-...|+.- ....++...+..+
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEE
Confidence 4 455664433 4444554433211112345678888888776 555554 55443222234332 2223455678888
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++.+ ++.+++.+...+..+-+|-. +..-.. -......+..+.+++++..++.+. ++.+++.+...++.-..
T Consensus 169 ~~~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 169 NRSP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp EECT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EEcC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 8865 45666655443333333320 111111 122345788899999988766552 56677664332332222
Q ss_pred eccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-CCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
+... ....+..+.+.+++..++ ++.+|.| .+..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 112467788887766555 4557776 4455556554444321 112357888887555 4566667887765
Q ss_pred EE
Q 001190 656 LA 657 (1128)
Q Consensus 656 w~ 657 (1128)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00066 Score=75.60 Aligned_cols=246 Identities=13% Similarity=0.018 Sum_probs=150.6
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 424 (1128)
.-.|.+..+.+. ++++ ....|+..++..+.... +......+..++|.+.+..|...
T Consensus 78 ~~~C~~~~~~~~-l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 345666666443 4333 44678888876544321 11223458899999866666555
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEecc
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPH 503 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~ 503 (1128)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457889999988764222 12222335678999986664 4556666788999886665544433 333557888887
Q ss_pred CCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 64 33444444444 67888887665444444444556889999998887777643 467899999865443333332
Q ss_pred ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.. .....+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22 234556663 33344444467788888877777666654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00043 Score=74.75 Aligned_cols=229 Identities=8% Similarity=0.016 Sum_probs=145.0
Q ss_pred eEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc----ceeeecccccccCeeE
Q 001190 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITG 920 (1128)
Q Consensus 845 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~ 920 (1128)
+|+.+..+.|+..|+.+.+....+. .......++|++.++.++.+-..++.|+.+++.. ......+........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 5666667789999998876655443 3456789999984566666767789999999876 2222222222245678
Q ss_pred EEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEEEEecCCccc
Q 001190 921 LAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYDASKMER 996 (1128)
Q Consensus 921 l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v~d~~~~~~ 996 (1128)
+++.+.+. +.++-...+.|.+.+++..... .+ .. . .......++++|++..|+.++ . +.|..+++. +..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~-~~-~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~ 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL-FR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVD 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEE-EE-EE-C---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceE-EE-EE-C---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCC
Confidence 99987544 5555567789999998764322 11 11 1 114578999999777666654 2 578888775 333
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
...+.... ......++++++++.|+.+. ..+.|.++|+............ .....+.++++. .+.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~----------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE----------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT----------TTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC----------CccCCcEEEEEE--CCE
Confidence 22222111 45678999999887777665 5568999998753332222210 112245677774 357
Q ss_pred EEEEEECCCcEEEEcCCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777788889999887665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00032 Score=79.33 Aligned_cols=250 Identities=11% Similarity=0.063 Sum_probs=146.1
Q ss_pred CeeEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC-CC----cEEEEecccc
Q 001190 833 AVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DS----TIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 905 (1128)
....++++| ++..|.++. .+.|+.+|..+++..... ........++|++ +++.|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 467889998 455666665 578999999877654433 3455688999999 7774444443 22 233344 333
Q ss_pred eee--ecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 906 EVK--SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 906 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
... ..+. ......+++++| +|.++++-..++.|..++..++..... ..... ......++|+|+|++|.+++
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~--~~~~~---~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL--FTIQD---SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE--EECSS---SSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--EEcCC---CCcceeEEEcCCCCEEEEEE
Confidence 222 2222 123456788999 777777776778999999987643211 11111 14567899999999777764
Q ss_pred --cCeEEEEecCC--ccc--ccccccC---C---------CCCCCeE-EEEEe--------eCCCEEEEEecCCcEEEEe
Q 001190 983 --ETQLAIYDASK--MER--IRQWTPQ---D---------ALSAPIS-CAVYS--------CNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 983 --d~~i~v~d~~~--~~~--~~~~~~~---~---------~h~~~v~-~l~~s--------~dg~~l~t~~~dg~i~vwd 1035 (1128)
.+.|..++... +.. +..+... . ..-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67888877653 211 1111110 0 0011223 45553 3355555555677899998
Q ss_pred cCCCceEEEeCCCC----CCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1036 ADTLRLRCYIAPST----YLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+|+......... ..... ......-..+..|+++|+++.++++-...+.|+..+++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 5675544433210 00000 00001123688999999557777777778888888764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.002 Score=69.85 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=114.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE-Eec--cccee
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI-YNV--RVDEV 907 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~i-wd~--~~~~~ 907 (1128)
..+..+.+.++++.++++.+|.|.. ..+.|+.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788878888777776665422 2222332222 224456789999999 788887665 444443 332 23333
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
+. ......+..+++.+++..++ ++.+|.+++++.+.++.-... ..........+..+++.+++..++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~--~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGEL--LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCC--BCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEec--cCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 23456788999999987665 455788877753333321111 1110001134778899999988888888777
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
.+....++.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 444554544333322111135678899986666 555667898777664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00088 Score=68.48 Aligned_cols=200 Identities=10% Similarity=0.063 Sum_probs=129.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.+..++|+|++..|+++...++.|...|.. |+.+...+ +.+ ....-.|++.++|.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 445799999999877677777778899999987 76654311 222 24677889999998777
Q ss_pred EEeCCCeEEEEEccCCCcceece--ee----cccccceeEEEEecCCCeEEEEEecCCC--eEEEEe--cCCCeEEEe--
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHS--QI----DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNF-- 490 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~--~~----~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd--~~g~~~~~~-- 490 (1128)
+.-.++.+.++++.....+.... .+ .........++|.|+++.+++ +.... .|..|+ ..+..+..+
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECcCCceEEEEcccccCCceeeecc
Confidence 76677889999887654322111 11 123456789999999985333 33333 455555 122222222
Q ss_pred -----cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------CeEEEEEEcCCCCeEEEe
Q 001190 491 -----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 491 -----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~ 556 (1128)
..+...+.++++++. .+++++.....+.+..+|.+. .....+.... ...-.++|.++|+..+++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 113345788899886 457777777888898998754 3444444332 256899999999866554
Q ss_pred eeccCCCceEEEEe
Q 001190 557 GTSKDGDSFLVEWN 570 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd 570 (1128)
+.+.++.+.
T Consensus 242 -----E~n~~y~f~ 250 (255)
T 3qqz_A 242 -----EPNRFYRFT 250 (255)
T ss_dssp -----TTTEEEEEE
T ss_pred -----CCceEEEEE
Confidence 245566554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.6e-05 Score=91.44 Aligned_cols=194 Identities=11% Similarity=0.071 Sum_probs=109.2
Q ss_pred CeeEEEec-cCCCeEEEEe--CC----eEEEEECCCc-eEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCC-----CcEE
Q 001190 833 AVPCIALS-KNDSYVMSAT--GG----KISLFNMMTF-KVMTT-FMSPPPASTFLAFHPQDNNIIAIGTED-----STIH 898 (1128)
Q Consensus 833 ~v~~~~~s-~dg~~la~~~--dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~d-----g~v~ 898 (1128)
.+...+|| |||++||.+. +| .|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999998775 23 3999999998 63211 11 1235789999 88777776654 3688
Q ss_pred EEecccceee--eccc-ccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 899 IYNVRVDEVK--SKLK-GHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 899 iwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
++++.+++.. ..+. .+..-...+.|||||++|+..+. ...|.++|+.++...... ....... ......+.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-~~l~~~~-~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTL-EIVRPRE-KGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCE-EESSCCC-TTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCcee-EEeecCC-CCceEEEeee
Confidence 8888776422 2222 12234568899999998886553 346888999875311100 1111111 1233334443
Q ss_pred CCCCEEEE-Ee-c----CeEEEEecCCcccccc-cccCCCCCCCeEEEEEeeCCCEE-EEEecCCc--EEEEec
Q 001190 973 ADQVRMLV-VH-E----TQLAIYDASKMERIRQ-WTPQDALSAPISCAVYSCNSQLV-FATFCDGN--IGVFDA 1036 (1128)
Q Consensus 973 ~d~~~l~~-~~-d----~~i~v~d~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l-~t~~~dg~--i~vwd~ 1036 (1128)
. |..|+. +. + ..|..+++.++..... +..+ ...+.--.++.++++| ++...++. |+++++
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 3 555544 43 2 2567777665322222 2222 2222222344445554 45667775 555565
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00016 Score=87.42 Aligned_cols=235 Identities=10% Similarity=-0.017 Sum_probs=130.1
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEe-CC-----CcEEEEecc
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGT-ED-----STIHIYNVR 903 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~-~d-----g~v~iwd~~ 903 (1128)
...++++..+|+++++|+ ++.+.+||..+.+-...-..+..+ -.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344678889999999987 457999999876543322222222 23556666 889999998 44 579999998
Q ss_pred cceeeec-----ccccccCeeEEEEcCCCCEEEEEcCCC---------cEEEEECCCCcccceeEEeecC---CCCCCCc
Q 001190 904 VDEVKSK-----LKGHQKRITGLAFSTSLNILVSSGADA---------QLCVWSIDTWEKRKSVTIHIPA---GKTPTGD 966 (1128)
Q Consensus 904 ~~~~~~~-----l~~h~~~V~~l~~s~d~~~l~s~~~Dg---------~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v 966 (1128)
+++-... ....... ....+..+++.++.++.|| .+..||..+............. .......
T Consensus 323 t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 7643221 0000000 0012234555555565544 4678888776533221111100 0000123
Q ss_pred cEEEEcC-CCCEEEEEe-cC-----------eEEEEecCCccccccc--ccCCCCCCCeEEEEEeeCCCEEEEEecC---
Q 001190 967 TRVQFNA-DQVRMLVVH-ET-----------QLAIYDASKMERIRQW--TPQDALSAPISCAVYSCNSQLVFATFCD--- 1028 (1128)
Q Consensus 967 ~~v~~s~-d~~~l~~~~-d~-----------~i~v~d~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~t~~~d--- 1028 (1128)
..+.|.. +++.+++|. ++ .+.+||..+....... .... ...-.+++..+||++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCc
Confidence 4455544 667766653 21 5778887766543322 1111 2222355667899999998854
Q ss_pred --------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1029 --------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1029 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
..+.+||..+++-.. +.. ++.... .| .+....| ++++++.||.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~~---~~~~R~--~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QNP---NSIVRV--YH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CCC---CSSCCC--TT----EEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cCC---CCCccc--cc----cHhhcCC-CcEEEecCCC
Confidence 468999998866433 221 111111 12 2233446 6899999985
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00081 Score=75.17 Aligned_cols=232 Identities=9% Similarity=0.002 Sum_probs=148.7
Q ss_pred CeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc----eeeecccccccCee
Q 001190 844 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----EVKSKLKGHQKRIT 919 (1128)
Q Consensus 844 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 919 (1128)
.+|+.+....|+..++.......... ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46667777889999998765544443 45678899999855666666667889999988752 22222332334677
Q ss_pred EEEEcCC-CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcc
Q 001190 920 GLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 995 (1128)
Q Consensus 920 ~l~~s~d-~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~ 995 (1128)
++++.+. +.+.++-...+.|.+.+++.......... .......++++|.+.+|+.++ .+.|...++....
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 45555666678899999886543222111 114578999999777777654 3678888876433
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
........ ......|+++++++.|+.+. ..+.|..+|+........+... ..-..+.+++.. .+
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE----------KRLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS----------STTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC----------CCCCCCEEEEEe--CC
Confidence 22222211 45678999999888777765 4678999998754433333210 112234566663 35
Q ss_pred CEEEEEECCCcEEEEcCCCCCCC
Q 001190 1075 NQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
.++.+-...+.|..++..+++..
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCC
T ss_pred EEEEecCCCCeEEEEEcCCCCce
Confidence 67777778888999987777543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00041 Score=78.35 Aligned_cols=252 Identities=8% Similarity=0.019 Sum_probs=149.2
Q ss_pred CeeEEEeccC--CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC---C-cEEEEecccc
Q 001190 833 AVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---S-TIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 905 (1128)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++...+ . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 44555554 578999999887765443 3455689999999 77755554322 1 2333333222
Q ss_pred eee-ecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 906 EVK-SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 906 ~~~-~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
... ..+. .-.....+++.| +|.++++-..++.|+.+|..++.....+. .. .. ......++|+|+|.+|.+++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~--~~-~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM--DT-KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC--SC-CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc--CC-CCCcccEEEeCCCCEEEEEeC
Confidence 110 1111 223456788999 67776666677889999988765422221 11 11 12334699999999777765
Q ss_pred -cCeEEEEecC--Cccc--ccccccC---C---------CCCCCeEEEEE---------eeCCCEEEEEecCCcEEEEec
Q 001190 983 -ETQLAIYDAS--KMER--IRQWTPQ---D---------ALSAPISCAVY---------SCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 983 -d~~i~v~d~~--~~~~--~~~~~~~---~---------~h~~~v~~l~~---------s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
.+.|+.++.. ++.. ...+... . ........+++ .++|.+.++-...+.|++++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 6788887765 2221 1111110 0 01234677999 667776666666788999985
Q ss_pred CCCceEEEeCCCC----CCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1037 DTLRLRCYIAPST----YLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+|.......... ..... .-....-..+..|+++|.++.++++=...+.|+..+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 675444332211 00000 00011224578999996578888887788889988765
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=68.94 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC--------HHHHHHHhhcc-CHHHHHHHHcCC
Q 001190 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFEEKVQAG-DWDEVEKYLSGF 60 (1128)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--------~~~~~~~i~~g-~w~~~~~~l~~~ 60 (1128)
|++..+||+.||..||.|.||..||.+|++||+|... ...|.+.+++| .|.+++..++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~ 69 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINED 69 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999987542 66888889999 888888887763
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00057 Score=69.85 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
....+..++++|++..|.+.. ++.|...|.. ++.++.+.- .....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 456799999999877666554 5779999997 888877742 234677889988 78777776677889999886543
Q ss_pred e---eeccc------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---CcccceeEEe-ecCCCCCCCccEEEEcC
Q 001190 907 V---KSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIH-IPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 907 ~---~~~l~------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~v~~v~~s~ 973 (1128)
. +.... ......-+|+|+|+++.|.++.......||.++. .......... ............++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 11111 1334568999999998777776665566666642 1111111000 00011114578999999
Q ss_pred CCCEEEEEe--cCeEEEEecCCcccccccccCCCC------CCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 974 DQVRMLVVH--ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
....+.+.+ ...+.++|.. ++.+..+....+. -.....|+|.++|+ |+..++-+.++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 766555543 5678888865 5554444433210 23668999999998 5556778877777644
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0032 Score=67.82 Aligned_cols=230 Identities=8% Similarity=-0.009 Sum_probs=139.5
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC----CeEEE-ecCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFN-FEGHEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g----~~~~~-~~~h~~ 495 (1128)
|+.+. ...|+..|+.+++... +.........++|.+++.. ++++-...+.|..++..+ ..... +...-.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEC-CCeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 44443 3458889998865433 2223456789999987664 555666678999999444 22222 322223
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ..+.|...+... .
T Consensus 78 ~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG-~ 153 (316)
T 1ijq_A 78 APDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-V 153 (316)
T ss_dssp CCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-C
T ss_pred CcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-C
Confidence 4567777543 33455666678899999987554444444344577899999977766655431 136788888754 3
Q ss_pred eeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
....+....-.....++++++++.|+.+. ..+.|..+|+....................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333222222567799999888887766 5678999998754332222222222234677774 344555555567888
Q ss_pred EEEcccC
Q 001190 655 ILANAIG 661 (1128)
Q Consensus 655 iw~~~~~ 661 (1128)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0006 Score=73.37 Aligned_cols=228 Identities=9% Similarity=-0.010 Sum_probs=142.7
Q ss_pred eEEEEeCCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCeeEE
Q 001190 845 YVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGL 921 (1128)
Q Consensus 845 ~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l 921 (1128)
+|+.+....|+.+++.... ....+. ......+++|++.++.++.+-...+.|+.+++..+.... .+........++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555666778899987653 111121 123467899998556677777778899999987663211 222222456789
Q ss_pred EEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcccc
Q 001190 922 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERI 997 (1128)
Q Consensus 922 ~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~~~ 997 (1128)
++.+.+ .++++-...+.|.+++++..... .+ .. ........++++|.+..|+.++ .+.|..+++.. ...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~ 157 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-FW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 157 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-EC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-Ee----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCe
Confidence 998744 45556566788999998764321 11 11 1114578999999777666654 46788877753 222
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1076 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1076 (1128)
..+.... -.....++++++++.|+.+. ..+.|..+|+.......... .....+.++++.. +.+
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~glav~~--~~l 221 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK------------GSLPHPFALTLFE--DIL 221 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SCCSCEEEEEEET--TEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec------------CCCCCceEEEEeC--CEE
Confidence 2221111 35668999999877777655 56789999987433322222 1223456777653 467
Q ss_pred EEEEECCCcEEEEcCCCCCC
Q 001190 1077 FAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1077 l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+.+-...+.|..++..+++.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCeEEEEECCCCCc
Confidence 77777788899999887764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00052 Score=72.66 Aligned_cols=196 Identities=9% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC----CC---EEEEEe-C--CCcEEEEecc--cceee
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD----NN---IIAIGT-E--DSTIHIYNVR--VDEVK 908 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d----~~---~lasg~-~--dg~v~iwd~~--~~~~~ 908 (1128)
...+++... .+.+.+||+ +|+.+..+.. +.+..+.+-| + ++ ++++.. . +++|.+|++. +++ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 334444444 678999999 8899888853 5677777766 2 21 223333 4 5789999773 443 3
Q ss_pred ecccc------cc-cCeeEEEE--cCC-CC-EEEEEcCCCcEEEEECC---CCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 909 SKLKG------HQ-KRITGLAF--STS-LN-ILVSSGADAQLCVWSID---TWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 909 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~~~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
..+.. .. ..+..+++ ++. ++ +++....+|.+..|++. .+............+ ..+..++..+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCC
Confidence 33311 11 55677887 774 44 67788889999999983 332222211121111 56788999998
Q ss_pred CCEEEEEe-cCeEEEEecC-----CcccccccccCCCCCCCeEEEEE--eeCCC-EEEEEe-cCCcEEEEecC-CCceEE
Q 001190 975 QVRMLVVH-ETQLAIYDAS-----KMERIRQWTPQDALSAPISCAVY--SCNSQ-LVFATF-CDGNIGVFDAD-TLRLRC 1043 (1128)
Q Consensus 975 ~~~l~~~~-d~~i~v~d~~-----~~~~~~~~~~~~~h~~~v~~l~~--s~dg~-~l~t~~-~dg~i~vwd~~-~~~~~~ 1043 (1128)
...|+++. +..|..|+.+ ++..+..+..... ...+..|++ .++|+ ||++++ .++++.|||.+ +.+.+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l-~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHL-TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSB-CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCcc-ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888886 5556666654 2334444322211 346888888 45666 777776 67799999997 777777
Q ss_pred EeC
Q 001190 1044 YIA 1046 (1128)
Q Consensus 1044 ~~~ 1046 (1128)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00053 Score=77.49 Aligned_cols=240 Identities=8% Similarity=0.120 Sum_probs=135.7
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC----eEEEEec
Q 001190 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVWEL 482 (1128)
Q Consensus 408 ~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~----~i~vWd~ 482 (1128)
....|+++| ++..|..+...+.|+.+|.+++.... +.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 46666666655789999998765322 3234556889999999994 233333222 3444444
Q ss_pred CCCeE--EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeEEEeeec
Q 001190 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 483 ~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22321 223456677553 455666666778899998875543222222 2345789999999996666543
Q ss_pred cCCCceEEEEeCCC--Cce--eeEeccc------cC--------Ccee-EEEEe--------CCCCEEEEEECCCcEEEE
Q 001190 560 KDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKFW 612 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~s~dg~i~iw 612 (1128)
..+.|..++... ++. ...+.+. .+ .... .++.. +++...++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 477888877653 222 2222221 00 0111 34443 234444444456788888
Q ss_pred ECCCCeeeEEEec---------CC------CCCCcceEEEcCC-CCEEEEEEcCCcEEEEEc
Q 001190 613 DMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 613 d~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~ 658 (1128)
+ .++........ .+ .......++++|+ +.++++-...+.|+.++.
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8 45654433321 00 0123568888885 444444444667777664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0056 Score=65.75 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=141.5
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~~ 443 (1128)
....|+..++..+..... .+......+..++|.+.+..|..+ ...+.|..++.+++.....
T Consensus 11 ~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~ 72 (318)
T 3sov_A 11 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 72 (318)
T ss_dssp CEEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE
T ss_pred ccCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE
Confidence 457899999876531110 011112356789999965555544 4577899999887642211
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEEe--ccCcE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1128)
.+...-.....+++.+.+.. +.++-...+.|.+++.+|.....+. ........+++.+. +..|+.+. ..+.|
T Consensus 73 --~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~--~g~ly~td~~~~~~I 147 (318)
T 3sov_A 73 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS--SGFMYWTDWGEVPKI 147 (318)
T ss_dssp --EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG--GTEEEEEECSSSCEE
T ss_pred --EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC--CCEEEEEecCCCCEE
Confidence 12222345778999976654 4556666789999996665544443 33455688888763 23444444 35778
Q ss_pred EEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.. +..+
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~ly 222 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILY 222 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEE
Confidence 88887654433333334456789999998888877643 578899999865433222322222 345566643 3333
Q ss_pred EEEECCCcEEEEECCCCeeeEEEe
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
++-...+.|..++..+++....+.
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCeEEEEECCCCCceEEEe
Confidence 444467788888887777665554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0075 Score=67.27 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=144.2
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC-----CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g-----~~~~~~~~h~ 494 (1128)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. +.++-...+.|..++..+ .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888988765332 2334567889999987664 455555678899998544 2223333234
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
.....+++.+. .+.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-. ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 45678887653 3456666667789999988765555555445556899999997777665532 12367888887654
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 4333333221 2567799999888888775 5678999998765444444332222334566663 33444555556778
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88886666
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0049 Score=69.42 Aligned_cols=256 Identities=8% Similarity=0.010 Sum_probs=148.8
Q ss_pred CeeEEEecc-CCCeEEEEe-C-CeEEEEECCCceEEEEeeCC---CCCeeEEEE-------cCCCCCEEEEEeCCC----
Q 001190 833 AVPCIALSK-NDSYVMSAT-G-GKISLFNMMTFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGTEDS---- 895 (1128)
Q Consensus 833 ~v~~~~~s~-dg~~la~~~-d-g~i~vwd~~~~~~~~~~~~~---~~~v~~l~~-------s~~d~~~lasg~~dg---- 895 (1128)
....|+|+| ++..|.++. . +.|++.|..++......... ......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 3 56999999887776554432 235789999 99 777555554443
Q ss_pred ---cEEEEeccc-ceee-----ecccccccCeeEEEEcCC-CCEEEEEcCCCcEEEEECC-------CCcc------c--
Q 001190 896 ---TIHIYNVRV-DEVK-----SKLKGHQKRITGLAFSTS-LNILVSSGADAQLCVWSID-------TWEK------R-- 950 (1128)
Q Consensus 896 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~~~Dg~i~iwd~~-------~~~~------~-- 950 (1128)
.|.+++... +... ..+.. -.....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12211 123457889994 5566667778889999998 5543 0
Q ss_pred --ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecC--Cccc--ccccccC---C---------CCCCCe
Q 001190 951 --KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTPQ---D---------ALSAPI 1010 (1128)
Q Consensus 951 --~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~~---~---------~h~~~v 1010 (1128)
......... ......++|+|+|.+|.+++ .+.|+.++.. .+.. ...+... . +.-...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 001111111 14567899999999777664 6788886543 2211 0111110 0 011233
Q ss_pred E-EEEEe-------eCCCEEEEEecCCcEEEEecCCCceEEEeCCCC-----------CCCCc-ccCCCCccceEEEEEe
Q 001190 1011 S-CAVYS-------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPST-----------YLSPS-VLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 1011 ~-~l~~s-------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~ 1070 (1128)
. .++.. ++|.+.++=.....|+.++ .+|.. .++.... ..... .-..+.-..+..|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 44454 4566655555778899999 56754 3443221 00111 0001222457899999
Q ss_pred cCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1071 PLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+.++.++++=...+.|+.+++....
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8447777777778899999887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0023 Score=72.14 Aligned_cols=239 Identities=9% Similarity=0.101 Sum_probs=135.0
Q ss_pred cceEEEEEccC--CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC---Ce-EEEE
Q 001190 407 ISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---KL-IKVW 480 (1128)
Q Consensus 407 ~~V~~l~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d---~~-i~vW 480 (1128)
.....++|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4555555544889999998775432 333445688999999999 45554321 22 3334
Q ss_pred ecCCCeE--EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-ec-CCCCeEEEEEEcCCCCeEEEe
Q 001190 481 ELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD-APGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~-~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
+..+... ..+. .......+++++. ++.+.++-..++.|+.++.+++..... .. ........++|+|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222211 1111 1223455666552 445555555678898888875544122 11 122234579999999976665
Q ss_pred eeccCCCceEEEEeCC--CCce--eeEeccc------c--------CCceeEEEE---------eCCCCEEEEEECCCcE
Q 001190 557 GTSKDGDSFLVEWNES--EGTI--KRTYAGF------R--------KKSNGVVQF---------DTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------~~~~~~l~~~s~dg~i 609 (1128)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 47789998765 3322 1222221 0 012345788 5666555555567889
Q ss_pred EEEECCCCeeeEEEecCCC----------------CCCcceEEEc-CCCCEEEEEEcCCcEEEEEc
Q 001190 610 KFWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~ 658 (1128)
+.++. ++...... ..+. ......++++ +++.++++-...+.|+.+++
T Consensus 368 ~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 56443332 2111 1224578888 45555444445667776654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.018 Score=69.60 Aligned_cols=213 Identities=10% Similarity=-0.021 Sum_probs=130.6
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~ 482 (1128)
....+..|+|.+.+..|... ...+.|+.+++....... ....+.........|++.+.++. +.++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999965555544 456789989887532100 01123334456778999988875 4566667789999997
Q ss_pred CCCeEEEec-CCCCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+|.....+. ........|++.+.. +.++++-... +.|...+++.................|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 777665554 334457889987642 3344443233 67888888765554444444567899999988888777643
Q ss_pred CCCceEEEEeCCCCceeeEeccccC-CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEe
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 624 (1128)
+...|...++........+..... .....+++ .+.+|+.+. ..+.|...|..+++.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 467899999865544443332211 12233444 344555554 55777777877776555553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0074 Score=73.02 Aligned_cols=222 Identities=9% Similarity=-0.020 Sum_probs=132.6
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.....+.....+.+++|++.+.+++.+-...+.|+.+++........ ...++...-.....|++.
T Consensus 415 ~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEE
T ss_pred cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeee
Confidence 33444455667889999996655666666678888888865321000 011133234567789999
Q ss_pred cCCCEEEEE-eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC-
Q 001190 416 PDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH- 493 (1128)
Q Consensus 416 pdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h- 493 (1128)
+.++.|..+ ...+.|.+.+++.... +. .+.........|++.|.+..+++.-.+..+.|.+.+.+|.....+...
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 888666655 4578899999886442 22 122344568899999986643333223336788888777766655432
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
-.....|++.+. ++.+.++-...+.|...+++........... -....+|++ ++.+|+..-. ..+.|...|.
T Consensus 557 l~~P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~dk 630 (791)
T 3m0c_C 557 IQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSANR 630 (791)
T ss_dssp CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEET
T ss_pred CCCceEEEEecC-CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEeC
Confidence 346788888654 3344444455678988988765554444332 223456665 3345554432 4677777777
Q ss_pred CCCceeeEec
Q 001190 572 SEGTIKRTYA 581 (1128)
Q Consensus 572 ~~~~~~~~~~ 581 (1128)
.+|+.+..+.
T Consensus 631 ~tG~~~~~l~ 640 (791)
T 3m0c_C 631 LTGSDVNLLA 640 (791)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEee
Confidence 7776555554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0041 Score=65.83 Aligned_cols=186 Identities=12% Similarity=0.171 Sum_probs=118.9
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCC--Ccc---EEEEEe-c--cCcEEEEecCCCCcee-eecC-
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMGSRV-DYDA- 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~~wd~~~~~~~~-~~~~- 536 (1128)
+++.....+-+.++|.+|+.++.+.. +.++.+.+.+.- .|+ ++++.. . +++|++|+++.....+ .+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666667899999999999999864 556666554310 111 233333 3 5789999885322222 2211
Q ss_pred -----CC-CeEEEEEE--cCC-CCeEEEeeeccCCCceEEEEeC-------CCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 537 -----PG-HWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 537 -----~~-~~i~~~~~--s~~-g~~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
.. ..+..+|+ ++. +++.+.... .++.+..|++ .+.+.+++|.... .+..|...+...+|
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~L 194 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGRL 194 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCeE
Confidence 11 45666777 774 443333332 4688888887 2346677777654 57788899989999
Q ss_pred EEEECCCcEEEEECC-----CCeeeEEEecCCCCCCcceEEE--cCCCC-EEEEEE-cCCcEEEEEcc
Q 001190 601 LAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~~~-~l~~~~-~dg~i~iw~~~ 659 (1128)
+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+|+..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998777777755 3455555433222235777887 45655 666666 57789999986
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0066 Score=68.33 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=136.2
Q ss_pred ceEEEEEcc-CCCEEEEEe-CCCeEEEEEccCCCcceeceee-cccccceeEEEE-------ecCCCeEEEEEecCCC--
Q 001190 408 SVSRVAWSP-DGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (1128)
Q Consensus 408 ~V~~l~~sp-dg~~las~~-~d~~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~f-------s~d~~~~~l~s~s~d~-- 475 (1128)
....|+|+| ++..|..+. ..+.|++.|.+++..... ... .........++| +++|.. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 455555554 446788888887654321 111 112335889999 999984 44443332
Q ss_pred -----eEEEEe-cC-CCeE-----EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-------CCCc------
Q 001190 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (1128)
Q Consensus 476 -----~i~vWd-~~-g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-------~~~~------ 530 (1128)
.|.+.+ .. |... ..+.... ....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366776 22 2321 1222111 2345666653 44566666778889999987 4432
Q ss_pred -----e-eeec-CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC--CCCce--eeEeccc------cC--------
Q 001190 531 -----R-VDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF------RK-------- 585 (1128)
Q Consensus 531 -----~-~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~------~~-------- 585 (1128)
. ..+. ......+.++|+|+|+.|+.+-. ..+.|+.++. .++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 0 1122 23345789999999996665532 4778888654 33332 1222221 00
Q ss_pred Ccee-EEEEe-------CCCCEEEEEECCCcEEEEECCCCeeeEEEecCC----------------------CCCCcceE
Q 001190 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRL 635 (1128)
Q Consensus 586 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 635 (1128)
.... .++.. .++..+++=..+..|+.++ .++. +.++...+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0122 34554 3455555555778899998 4554 33333221 01224578
Q ss_pred EEcCC-CCEEEEEEcCCcEEEEEcccC
Q 001190 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~-~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++ +.++++-...+.|+.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 555555555677888877654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00026 Score=85.39 Aligned_cols=207 Identities=10% Similarity=-0.008 Sum_probs=125.3
Q ss_pred CCeeEEEeccCCCeEEEEe--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466789999888777775 57899999875 22222222222345678888646677776667789999998765
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcC--CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
.....+.........+++.|++.+|+.+.. .+.|..++++..... .+ . .. .......|+|+|++..|+.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l-~---~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-V---TE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE-S---CS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE-E---eC-CCCCccEEEEeccCCEEEEEec
Confidence 433333322345678899987665554432 267877777643221 11 0 01 114567899999887777765
Q ss_pred -cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.+.|.++++..... ..+............|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 56899999864322 222211100223345555433 334444567889999999998887775
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.011 Score=64.66 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=121.0
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceE--EEEee---CCCCCeeEEEEcCCC----CCEEEEEeCC-----CcEE
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV--MTTFM---SPPPASTFLAFHPQD----NNIIAIGTED-----STIH 898 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~l~~s~~d----~~~lasg~~d-----g~v~ 898 (1128)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977765589999998 4432 22221 1234688999999 5 5555544433 6788
Q ss_pred EEecccce-----e-eeccc---ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCC---------
Q 001190 899 IYNVRVDE-----V-KSKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTW--------- 947 (1128)
Q Consensus 899 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~--------- 947 (1128)
.|+...+. . +..+. +.......++|.|||.++++.+.. +.|.-++.+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 88876431 1 11132 111123589999999877765422 34444444420
Q ss_pred ---cccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe-cCeE------EEEecCCccc------------------cc
Q 001190 948 ---EKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-ETQL------AIYDASKMER------------------IR 998 (1128)
Q Consensus 948 ---~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-d~~i------~v~d~~~~~~------------------~~ 998 (1128)
........ ++ .....++|+| +|.++++-. .+.+ .|.-+..+.. +.
T Consensus 189 ~~~~~~~i~a~----G~--rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVYSL----GH--RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEEEE----CC--SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEEEE----cC--CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011110 00 3356789999 566555532 2221 2333333321 11
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceE---EEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLR---CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.+. +......++| .+|+++++....+.|...+++..... .... . .+ .....+..+++.| |+.
T Consensus 263 ~~~----~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~--~-----~~--~~~~rp~~v~~~p-dG~ 327 (352)
T 2ism_A 263 FWP----QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE--T-----AL--SGFGRLREVQVGP-DGA 327 (352)
T ss_dssp ECT----TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE--E-----EE--ESSCCEEEEEECT-TSC
T ss_pred ecC----CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh--e-----ec--ccCCCeeEEEECC-CCc
Confidence 110 1234567888 57776666556677777777644311 0000 0 00 1123578899998 577
Q ss_pred EEEEEE
Q 001190 1076 QFAIGL 1081 (1128)
Q Consensus 1076 ~l~s~~ 1081 (1128)
++++..
T Consensus 328 lyv~~~ 333 (352)
T 2ism_A 328 LYVTTS 333 (352)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.052 Score=58.50 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=153.8
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++-.+|..+ ++|.=. ..++.|+|+++.+.+.... + ...|..=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~-----------------~---~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-----------------M---TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE-----------------C---SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee-----------------c---CCCceEEEecCCC-eEEEEc-CC
Confidence 455688877 666653 6799999999988775311 1 2356666665443 454443 45
Q ss_pred eEEEEEccCCCcceeceeeccc----ccceeEEEEecCCCeEEEEEec------CCCeEEEEecCCCeEEEecCCCCCeE
Q 001190 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
.|.-|+++....... .+..| ...|.....+++.++ ++++|- -.|.+.+|..+.+.-+.+.||.+...
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999975332221 34444 346777788899996 333332 24678899977888889999988776
Q ss_pred EEeccCCCCcc-EEEEEecc---CcEEEEecCCC-Cc-------eeeec----CCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 499 SICPHHKENIQ-FIFSTAID---GKIKAWLYDTM-GS-------RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 499 ~~~~~~~~~~~-~l~s~~~d---g~i~~wd~~~~-~~-------~~~~~----~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.+....... ++..+... +.+++-++... .. ...+. ....-..++.+|+.-..+.... .
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT----K 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----K 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE----T
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe----c
Confidence 66654332222 33333332 78888888543 11 11111 1133566788888888777776 4
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
-|.+++||+.++.++..-+-..+ .+...+......-++.....|.|.--.++....+.
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 89999999999999877665544 56655566666667777777777666666555443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00098 Score=80.32 Aligned_cols=211 Identities=11% Similarity=-0.044 Sum_probs=123.9
Q ss_pred cceEEEEEccCCCEEEEEe-CCCeEEEEEccCC---CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec
Q 001190 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~---~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~ 482 (1128)
..+..++|++++..|..+. ..+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 3567899999777776654 4578999998751 11111 12122234567888865554 4455556788999996
Q ss_pred CCCeEEEecC-CCCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.|..+..+.. .......+++.+.. +.++++-... +.|..++++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 6665555432 22345677876532 3333333222 67877776544333332233445678999998877776643
Q ss_pred CCCceEEEEeCCCCceeeEeccc-cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
..+.|..+++........+... .......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4778999998654333222211 1112334555443 3334444678999999988887776643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.021 Score=59.97 Aligned_cols=205 Identities=12% Similarity=0.069 Sum_probs=125.6
Q ss_pred CCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEE-eeC----CCC--CeeEEEE---cCCCCCEEEEEe-------
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGT------- 892 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----~~~--~v~~l~~---s~~d~~~lasg~------- 892 (1128)
....+++|.+....+..++ .++|..||...+..... +.+ ... .+..+.+ .| +++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3345788988666666665 89999999986644333 221 111 3578999 68 688887644
Q ss_pred ------CCCcEEEEecc---cceeeeccc--ccc-----------cCeeEEEEcCCCCEEEEEcCC-CcEEEEECCCCcc
Q 001190 893 ------EDSTIHIYNVR---VDEVKSKLK--GHQ-----------KRITGLAFSTSLNILVSSGAD-AQLCVWSIDTWEK 949 (1128)
Q Consensus 893 ------~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~~~D-g~i~iwd~~~~~~ 949 (1128)
.+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999999 777654332 111 247899999999999988877 77666665543 2
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccc--ccccc-cCCCCCCCeEEE-EEeeCCCEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER--IRQWT-PQDALSAPISCA-VYSCNSQLVFA 1024 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~--~~~~~-~~~~h~~~v~~l-~~s~dg~~l~t 1024 (1128)
.................+.|+++|||..|++.. .+.+..+|+.+... +..-. +..........+ ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 222222222222235578999999999888864 88999999884322 11100 100012234453 44458887554
Q ss_pred -EecCCcEEEEecCC
Q 001190 1025 -TFCDGNIGVFDADT 1038 (1128)
Q Consensus 1025 -~~~dg~i~vwd~~~ 1038 (1128)
....+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 44555555555443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.035 Score=60.54 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=125.4
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCce-EEEEee---CCCCCeeEEEEcCC---CCCEEEEEeC---C----CcE
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGTE---D----STI 897 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~l~~s~~---d~~~lasg~~---d----g~v 897 (1128)
.....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977766689999997 4554 222221 12346889999993 3555554432 3 567
Q ss_pred EEEecccc-------eee-eccc---ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCCc-----
Q 001190 898 HIYNVRVD-------EVK-SKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE----- 948 (1128)
Q Consensus 898 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~~----- 948 (1128)
..|+.... +.+ ..+. .| ....++|.|||.++++.+.. |.|.-++.+..-
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 111 1122 23 24579999999977775432 334444443210
Q ss_pred --ccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe--cC--eEEEEecCCccc------------------ccccccC
Q 001190 949 --KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ET--QLAIYDASKMER------------------IRQWTPQ 1003 (1128)
Q Consensus 949 --~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~--~i~v~d~~~~~~------------------~~~~~~~ 1003 (1128)
....... ++ .....++|+| +|.+.++-. +. .|.+. ..+.. +..+.
T Consensus 186 f~~~~i~a~----G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-- 255 (354)
T 3a9g_A 186 FPNSPIWSY----GH--RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-- 255 (354)
T ss_dssp STTCCEEEE----CC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--
T ss_pred CCCCcEEEE----cc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--
Confidence 0001100 11 3467899999 666555532 21 24333 22221 11110
Q ss_pred CCCCCCeEEEEEe-------eCCCEEEEEecCCcEEEEecCCC-ceEE--EeCCCCCCCCcccCCCCccceEEEEEecCC
Q 001190 1004 DALSAPISCAVYS-------CNSQLVFATFCDGNIGVFDADTL-RLRC--YIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1073 (1128)
Q Consensus 1004 ~~h~~~v~~l~~s-------~dg~~l~t~~~dg~i~vwd~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1073 (1128)
.. ......++|. .+|+++++....+.|...+++.. +... .+. ......+..+++.| |
T Consensus 256 ~~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----------~~~~~rp~~v~~~p-D 322 (354)
T 3a9g_A 256 SE-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----------KNVFGRLRDVVIDD-D 322 (354)
T ss_dssp TC-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----------TTTSCCEEEEEECT-T
T ss_pred CC-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----------cCCCCCeeEEEECC-C
Confidence 11 3467788883 56777766666778888888753 3321 121 01234578899999 6
Q ss_pred CCEEEEEE
Q 001190 1074 PNQFAIGL 1081 (1128)
Q Consensus 1074 ~~~l~s~~ 1081 (1128)
+.++++..
T Consensus 323 G~lyv~~~ 330 (354)
T 3a9g_A 323 GGILISTS 330 (354)
T ss_dssp SCEEEEEC
T ss_pred CcEEEEEe
Confidence 77777664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.021 Score=59.87 Aligned_cols=164 Identities=9% Similarity=0.031 Sum_probs=106.7
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE---ccCCCEEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW---SPDGNYVGV 423 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spdg~~las 423 (1128)
..+++|++....++++.-..++|..|+...+..... .+. ++... ......+..|.| .|+|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~~---------g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASSN---------GDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCCS---------SCCSEEEEEEEESSSSSCCEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Ccccc---------CCCcceeeEEEEeccCCCCcEEEE
Confidence 457889886554656555789999999876543221 000 00000 011224578999 688888876
Q ss_pred Ee-------------CCCeEEEEEcc---CCCcceeceeecccc-----------cceeEEEEecCCCeEEEEEecCC-C
Q 001190 424 AF-------------TKHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGDD-K 475 (1128)
Q Consensus 424 ~~-------------~d~~i~vwd~~---~~~~~~~~~~~~~h~-----------~~v~~l~fs~d~~~~~l~s~s~d-~ 475 (1128)
.. .+..|..||+. +++.+... .|.... ....+++..++|+ ..++++.- +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCCC
Confidence 44 25779999999 77765432 232221 2488999999999 67778777 8
Q ss_pred eEEEEecCCCeEEEecCC------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 476 LIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.|...+.+|+.+..+... ....+.++++| +|.+|++....|.+..+|+..
T Consensus 160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 888888777655433211 12356888876 667777776699999999874
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.28 Score=52.99 Aligned_cols=263 Identities=10% Similarity=0.112 Sum_probs=154.5
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
+...|.+.|+..+..+...+-. ..+.-.+|..+.++.-. ...+.|+|+++...+....... .|.--.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-
Confidence 3457889999887665433322 22455788887776654 6899999999999998887654 3555555444
Q ss_pred CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCC
Q 001190 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1128)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1128)
+.|+..+ +..|+-|++.....+.+.+..+..-
T Consensus 117 ~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------- 148 (494)
T 1bpo_A 117 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------- 148 (494)
T ss_dssp TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-----------------------------------------------
T ss_pred CeEEEEc-CCeeEEecccCCCCchhheecchhc-----------------------------------------------
Confidence 3455444 5689999986543333333332111
Q ss_pred CCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-------cceeEeeecc
Q 001190 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWH 794 (1128)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~ 794 (1128)
...+|.....+++.++++..|- .|.+.+|.++
T Consensus 149 -----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 149 -----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp -----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred -----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 1123444444455554443321 3667777655
Q ss_pred ccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC---CCeEEEEe----CCeEEEEECCCc-----
Q 001190 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF----- 862 (1128)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~~----dg~i~vwd~~~~----- 862 (1128)
.... ..+.+ |......+.+..+ .++++.+. .++++|.++...
T Consensus 188 r~~s------------------------Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 188 RKVS------------------------QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp TCCE------------------------EEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred cccc------------------------chhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 3211 11111 2222222221111 12333333 377999988532
Q ss_pred ---eEEEEee----CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC
Q 001190 863 ---KVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 863 ---~~~~~~~----~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
+....+. ...+-..++.+|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+......=++....
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr 320 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR 320 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred CccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEcc
Confidence 1111111 1123356888888 7778888999999999999999998776666677776666666555666667
Q ss_pred CCcEEEEECCCCcc
Q 001190 936 DAQLCVWSIDTWEK 949 (1128)
Q Consensus 936 Dg~i~iwd~~~~~~ 949 (1128)
.|.|.--.++....
T Consensus 321 ~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 321 KGQVLSVCVEEENI 334 (494)
T ss_dssp TCEEEEEEECTTTH
T ss_pred CceEEEEEEccccc
Confidence 88777777666543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.025 Score=60.92 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=122.3
Q ss_pred CeeEEEeccCCCeEEEE-------------eCCeEEEEECCC--ceE-EEEeeC-----CCCCeeEEEEcCC-CC--CEE
Q 001190 833 AVPCIALSKNDSYVMSA-------------TGGKISLFNMMT--FKV-MTTFMS-----PPPASTFLAFHPQ-DN--NII 888 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~-~~~~~~-----~~~~v~~l~~s~~-d~--~~l 888 (1128)
....+++.|+|..++++ .+|.|.++|..+ ++. ...+.+ .......+.+.++ ++ +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45677788988777765 378899999873 232 112222 1234566776542 23 244
Q ss_pred EEEeC--CCcEEEEecccc----eeeeccccc-ccCeeEEEEcCCCCEEEEEcC---C------------CcEEEEECCC
Q 001190 889 AIGTE--DSTIHIYNVRVD----EVKSKLKGH-QKRITGLAFSTSLNILVSSGA---D------------AQLCVWSIDT 946 (1128)
Q Consensus 889 asg~~--dg~v~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~d~~~l~s~~~---D------------g~i~iwd~~~ 946 (1128)
++-.. +.+|.+|++..+ ..+..+.+. -...+.+.+.++|.++++... | ..=.+|.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 567888887653 223334332 235788999999998887641 1 2234555544
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccc---cccccCCCCCCCeEEEEEee-CCC
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERI---RQWTPQDALSAPISCAVYSC-NSQ 1020 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~---~~~~~~~~h~~~v~~l~~s~-dg~ 1020 (1128)
++. ....... ...+.++|+||++.+.+++ .+.|..|++.....+ +.+.. ......+++.+ +|+
T Consensus 211 ~~~-~~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 NDV-RVVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGD 279 (355)
T ss_dssp TCC-EEEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCC
T ss_pred CeE-EEeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCCCc
Confidence 432 1111111 4578899999999988875 788999998642222 22211 46678899999 599
Q ss_pred EEEEEecC-CcEEEEecC--CCceEEEeC
Q 001190 1021 LVFATFCD-GNIGVFDAD--TLRLRCYIA 1046 (1128)
Q Consensus 1021 ~l~t~~~d-g~i~vwd~~--~~~~~~~~~ 1046 (1128)
+.+++..+ +.|..|+.. .+..+.++.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 77766544 355555544 366666666
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.22 Score=54.12 Aligned_cols=230 Identities=16% Similarity=0.120 Sum_probs=118.6
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-eecccccccccccccCccccceeccCCCcceEEEEEccC---CC
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 419 (1128)
-...+.++|.|||+ ++++ ..+|.|.+++ .+|+ .+.. + . +..........|+|+|+ +.
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCC
Confidence 45689999999998 5555 4569999887 3443 1110 0 0 11222456889999998 55
Q ss_pred EEEEEeC----C----CeEEEEEccCCC-cc---eec-eeec-ccccceeEEEEecCCCeEEEEEecC------------
Q 001190 420 YVGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------ 473 (1128)
Q Consensus 420 ~las~~~----d----~~i~vwd~~~~~-~~---~~~-~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~------------ 473 (1128)
.|..+.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCC
Confidence 5544432 3 567778776541 11 111 0121 1112346799999997 4444332
Q ss_pred -CCeEEEEecCCC----------eEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCC----------
Q 001190 474 -DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG---------- 529 (1128)
Q Consensus 474 -d~~i~vWd~~g~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~---------- 529 (1128)
.+.|.-.+.+|+ .+. -.++.. ...++|++. ++.++++-...+ .|.+- ..+.
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 245655665554 122 223433 456778653 334443322211 12222 2111
Q ss_pred --------ceeeecCCCCeEEEEEEc-------CCCCeEEEeeeccCCCceEEEEeCCCC-cee--eEeccccCCceeEE
Q 001190 530 --------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVV 591 (1128)
Q Consensus 530 --------~~~~~~~~~~~i~~~~~s-------~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~ 591 (1128)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 111221223457788884 4565555443 3567877777653 222 22221112356778
Q ss_pred EEeCCCCEEEEE
Q 001190 592 QFDTTQNHFLAV 603 (1128)
Q Consensus 592 ~~~~~~~~l~~~ 603 (1128)
++.|||...++.
T Consensus 318 ~~~pDG~lyv~~ 329 (354)
T 3a9g_A 318 VIDDDGGILIST 329 (354)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 888888655554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.057 Score=58.90 Aligned_cols=229 Identities=13% Similarity=0.039 Sum_probs=114.1
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceecee---ecccccceeEEEEecC---CCeEEEEEecCC-----C
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~fs~d---~~~~~l~s~s~d-----~ 475 (1128)
.....++|.|||++++ +..+|.|.+++ .++. ..+.. +.........++|+|| +.. +.++.... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 3567999999998555 45679999988 4431 11111 1122456889999998 553 23333322 5
Q ss_pred eEEEEe-cCCC-----eE-EEec---CCCCCeEEEeccCCCCccEEEEEec-------------cCcEEEEecCCC----
Q 001190 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (1128)
Q Consensus 476 ~i~vWd-~~g~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~~wd~~~~---- 528 (1128)
.|..++ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 677788 4331 11 1132 1111235677765 6655555432 145555554320
Q ss_pred --------CceeeecCCCCeEEEEEEcC-CCCeEEEeeeccCC-----CceEEEEeCCC--------C--------ceee
Q 001190 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE--------G--------TIKR 578 (1128)
Q Consensus 529 --------~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~-----~~~i~~wd~~~--------~--------~~~~ 578 (1128)
.....+.........++|+| +|++.++-. ..+. ...|.+..... + .++.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 01111111223467889999 555444432 1111 01233322111 0 1122
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee------eEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+..+. ....++| .++..+++.-..+.|...+++.... ...+. .....+..+++.|||.++++..
T Consensus 263 ~~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 221111 2345666 3555555544666777777654321 11221 1123678999999997766654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.06 Score=58.67 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=126.7
Q ss_pred CeeEEEeccCCC-eEEEEeCCeEEEEECCCceEEEEee-------CCCCCeeEEEEcCC---CCCEEEEEeC-------C
Q 001190 833 AVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGTE-------D 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~l~~s~~---d~~~lasg~~-------d 894 (1128)
....++|.|||+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 6665558999999854 33221111 12345688999993 3555554332 2
Q ss_pred CcEEEEecccc-------ee-eeccc-----ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCCc
Q 001190 895 STIHIYNVRVD-------EV-KSKLK-----GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE 948 (1128)
Q Consensus 895 g~v~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~~ 948 (1128)
..|..|++..+ +. +..+. .|. ...++|.|||.++++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11221 132 3579999999777765432 345555554320
Q ss_pred ------------ccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe--cCeEEEEecCCccccc---------------
Q 001190 949 ------------KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKMERIR--------------- 998 (1128)
Q Consensus 949 ------------~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~~i~v~d~~~~~~~~--------------- 998 (1128)
....... ++ .....++|+| +|.+.++-. ++.=.|.-+..+....
T Consensus 176 p~~npf~~~~~~~~~i~a~----G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSY----GI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEE----CC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEEE----cC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 0111111 11 3467899999 565555422 2222333333222100
Q ss_pred ---------ccccCC---CCCCCeEEEEEee-------CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCC
Q 001190 999 ---------QWTPQD---ALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1059 (1128)
Q Consensus 999 ---------~~~~~~---~h~~~v~~l~~s~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1128)
.+.... .+......++|.. +|+++++....+.|...+++.++....... . ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~------~~ 320 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---L------TD 320 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---S------GG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---c------cC
Confidence 000000 1123567778864 466777666778888888876644332210 0 01
Q ss_pred CccceEEEEEecCCCCEEEEEE-CCCcEEEEcC
Q 001190 1060 QTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEP 1091 (1128)
Q Consensus 1060 ~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~ 1091 (1128)
....+..+++.| |+.++++.. .+| +||.+
T Consensus 321 ~~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 321 RGQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp GCCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 123678999999 687766543 344 45544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.038 Score=59.67 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=82.0
Q ss_pred EEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee----
Q 001190 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK---- 908 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~---- 908 (1128)
.....+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+...
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567899999999999999998755455555543 23688999999 999999876 668999888743211
Q ss_pred --------ecccc------cccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCCc
Q 001190 909 --------SKLKG------HQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWE 948 (1128)
Q Consensus 909 --------~~l~~------h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~~ 948 (1128)
+.+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 11111 2467999999996 4589999999999999998743
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.024 Score=60.66 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=122.1
Q ss_pred CeEEEEe---CCeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCC----CcEEEEeccccee--eecccc
Q 001190 844 SYVMSAT---GGKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED----STIHIYNVRVDEV--KSKLKG 913 (1128)
Q Consensus 844 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~~ 913 (1128)
.+++.|+ ...+.+||..+.+-...-....... .+++. - ++++++.|+.+ ..+.+||..+++- +..+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3445554 2569999998865432211111111 12222 2 67788888765 6788999887642 222222
Q ss_pred cccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-----
Q 001190 914 HQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----- 982 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----- 982 (1128)
....-..+.+ ++++++.|+.+ ..+.+||..+.+-.. ..... ....-..++. -+++.++.+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSML--TQRCSHGMVE-ANGLIYVCGGSLGNN 162 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCS--SCCBSCEEEE-ETTEEEEECCEESCT
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCc--CCcceeEEEE-ECCEEEEECCCCCCC
Confidence 1112222222 67777888765 458899988754221 11111 1111122222 3556666542
Q ss_pred -----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCCCC
Q 001190 983 -----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 983 -----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
-..+.+||..+..-...-... .......+..-++++++.|+.+ ..+.+||+.+.+-... .. ++
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p 235 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMI---EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SP---MP 235 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CC---CS
T ss_pred CcccccceEEEeCCCCCeEEECCCcc---chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CC---CC
Confidence 245889998876533221111 1111112222377777777654 4689999988764332 21 11
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCCC
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
.... .+ .++.+ ++.+++.|+.+ ..+.+||+.+.+ |...++.
T Consensus 236 ~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~ 281 (306)
T 3ii7_A 236 WKGV--TV----KCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKV 281 (306)
T ss_dssp CCBS--CC----EEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEE
T ss_pred CCcc--ce----eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCc
Confidence 1110 11 12222 46788888855 457888888755 9886443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.037 Score=59.01 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=122.3
Q ss_pred CCCeEEEEe-C------CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEecccce---
Q 001190 842 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE--- 906 (1128)
Q Consensus 842 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~--- 906 (1128)
++.+++.|+ . ..+.+||..+.+-...-..........+... ++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445555554 1 3588999887654322111111111122223 67788888865 468999988754
Q ss_pred --eeecccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEE
Q 001190 907 --VKSKLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1128)
Q Consensus 907 --~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 979 (1128)
.+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-... ...... .....++. -+++.++
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~--r~~~~~~~-~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTA--REGAGLVV-ASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---EECSSC--CBSCEEEE-ETTEEEE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEEC---CCCCCC--cccceEEE-ECCEEEE
Confidence 23222222122222222 67777777754 3588899887543222 111111 11122222 2566666
Q ss_pred EEe------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCC
Q 001190 980 VVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 980 ~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~ 1048 (1128)
.|. -..+.+||..+..-...-... .......+...++++++.|+.+ ..+.+||+++.+-...-.
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC--
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCC---cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC--
Confidence 643 246889998876543321111 1111112223377777777764 469999999876543321
Q ss_pred CCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCC
Q 001190 1049 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p 1103 (1128)
++.... .| ..+.. ++.+++.|+.+ ..+.+||+.+.+ |...++
T Consensus 240 --~p~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~ 286 (301)
T 2vpj_A 240 --MTTPRC--YV----GATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTS 286 (301)
T ss_dssp --CSSCCB--SC----EEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEE
T ss_pred --CCCccc--ce----eEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCC
Confidence 111111 11 12222 46788888766 357788888754 877543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.063 Score=57.21 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=120.4
Q ss_pred CCCeEEEEe-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCCC-----cEEEEeccccee--e
Q 001190 842 NDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEV--K 908 (1128)
Q Consensus 842 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~ 908 (1128)
++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++++++.|+.++ .+.+||..+.+- +
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 358899988765433211111111 12222 2 677888887553 588899876642 2
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
..+......-..+.+ ++++++.|+.++ .+.+||+.+.+-.. +..... ......++. -+++.++.|.
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~--~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNT--RRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSS--CCBSCEEEE-ETTEEEEECCE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCC--cccCceEEE-ECCEEEEEeCC
Confidence 222221112222222 667777787653 47788887754221 111111 111122222 2556555542
Q ss_pred -------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCC
Q 001190 983 -------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTY 1050 (1128)
Q Consensus 983 -------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 1050 (1128)
-..+.+||..+..-...-..... .... ++ ..-++++++.|+.+ ..+.+||+++++-... ...
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~-- 238 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-ADM-- 238 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-CCC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-cccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-CCC--
Confidence 23588999887654322111111 1111 22 23377877777764 3699999988764432 211
Q ss_pred CCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----cEEEEcCCCCCCCcccCC
Q 001190 1051 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg-----~i~iWd~~~~~~~w~~~~ 1102 (1128)
+.... .+ ..+.. ++.+++.|+.++ .+.+||+.+.+ |...+
T Consensus 239 -~~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 239 -NMCRR--NA----GVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp -SSCCB--SC----EEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred -CCccc--cC----eEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 11110 11 11222 467888888664 48899998865 98765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.51 Score=50.48 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=122.7
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEE--EEe----eCCCCCeeEEEEcCC---CCCEEEEEe--CCCcEEE
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--TTF----MSPPPASTFLAFHPQ---DNNIIAIGT--EDSTIHI 899 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~--~~~----~~~~~~v~~l~~s~~---d~~~lasg~--~dg~v~i 899 (1128)
.....++|.|||+++++-. .|.|++++..+++.. ..+ .........++++|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4577999999999888887 799999987665542 222 123456789999983 354444322 3455666
Q ss_pred Eecccc----------eee-eccc---ccccCeeEEEEcCCCCEEEEEcC-------------CCcEEEEECCCCcccc-
Q 001190 900 YNVRVD----------EVK-SKLK---GHQKRITGLAFSTSLNILVSSGA-------------DAQLCVWSIDTWEKRK- 951 (1128)
Q Consensus 900 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~~~-------------Dg~i~iwd~~~~~~~~- 951 (1128)
|.+..+ +.+ ..+. .| ....|+|.|||.++++.+. .|.|.-.+.+. +...
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCC
Confidence 665542 111 1121 23 2457999999998887653 23333333332 1000
Q ss_pred ----eeEEeecCCCCCCCccEEEEcCCCCEEEEE--ecCeEEEEecCCcccc------------------cccccCCCCC
Q 001190 952 ----SVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERI------------------RQWTPQDALS 1007 (1128)
Q Consensus 952 ----~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~v~d~~~~~~~------------------~~~~~~~~h~ 1007 (1128)
...+. ..++ .....++|+|+|.+.++- .++.-.|.-+..+... ..+.. +.
T Consensus 189 nPf~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~---~~ 262 (347)
T 3das_A 189 NPFPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST---DE 262 (347)
T ss_dssp CSSTTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT---TT
T ss_pred CCCCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC---CC
Confidence 00000 0111 346789999998877663 2333334444433321 00100 01
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
.....++|. +|.++...-..+.|....++.+.... . ....+ ......+..|+..| |+.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~--~-----~e~~l-~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA--D-----PQAFL-EGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS--C-----CEEES-TTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceec--c-----eEEee-cCCCCCccEEEECC-CCcEEEEEc
Confidence 345677775 46555555555666666665443210 0 00000 12234678888888 576666544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.7 Score=49.64 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=113.4
Q ss_pred cceEEEEEccCCCEEEEEe------------CCCeEEEEEccCCC-cceeceeecc-----cccceeEEEEec--CCCeE
Q 001190 407 ISVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLL 466 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~------------~d~~i~vwd~~~~~-~~~~~~~~~~-----h~~~v~~l~fs~--d~~~~ 466 (1128)
...-.++..|+|..+++++ .+|.|.++|.++.. ..+.+ .+.+ .......+.+.+ +|...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455677889887666652 68999999998432 12222 2323 234677788766 45432
Q ss_pred EEEEecC--CCeEEEEe--cCCCeE---EEecCC-CCCeEEEeccCCCCccEEEEEec---c------------CcEEEE
Q 001190 467 CVVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI---D------------GKIKAW 523 (1128)
Q Consensus 467 ~l~s~s~--d~~i~vWd--~~g~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d------------g~i~~w 523 (1128)
++++-.. +.+|.+|+ ..+... ..+.+. -...+.+++.+ +|.+.++... | ..=++|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3343333 56888888 333332 333332 23467787754 5666665431 1 122334
Q ss_pred ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-Cce--eeEeccccCCceeEEEEeC-CCCE
Q 001190 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNH 599 (1128)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~ 599 (1128)
.++..+.. .+...-...+.++||||++.++.+.. ..+.|+.|++.. ++. .+.+. .......+++.+ +|+.
T Consensus 207 r~d~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 207 YYSPNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EECTTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCE
T ss_pred EEECCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcE
Confidence 33333222 22222345789999999998887764 467899999863 332 22332 123566788998 5887
Q ss_pred EEEEECC-CcEEEEECC
Q 001190 600 FLAVGED-SQIKFWDMD 615 (1128)
Q Consensus 600 l~~~s~d-g~i~iwd~~ 615 (1128)
.+++..+ +.|..|+..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 7766543 344445443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.13 Score=54.66 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=94.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCC---cceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-c
Q 001190 417 DGNYVGVAFTK-----HLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-L 482 (1128)
Q Consensus 417 dg~~las~~~d-----~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~ 482 (1128)
+++.++.|+.+ ..+.+||..+++ -.. ...+......- +++. .+++ +++.|+.+ ..+.++| .
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLA-GATT-LGDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSC-EEEE-ETTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccce-eEEE-ECCE--EEEEcccCCCcccceEEEEcCC
Confidence 67777777754 358999988865 221 11121111111 1222 2555 56666543 3688888 4
Q ss_pred CCCeE--EEecCCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeE
Q 001190 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l 553 (1128)
+++-. ..+......-.++.+ ++.+++.|+.+ ..+.+||+.+..=...-..... ....+. -+++.+
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~ 210 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIY 210 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEE
T ss_pred CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEE
Confidence 44322 222111111122222 45677777655 4577788765432221111111 112222 256666
Q ss_pred EEeeeccCC-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeee
Q 001190 554 FSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNIL 620 (1128)
Q Consensus 554 ~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 620 (1128)
+.++.+... ...+.+||..+.+-...-..... .....+..-++..++.|+.+ ..+.+||.++.+..
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666643221 35689999987764332221111 11112222255666666654 45778888776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.18 Score=53.93 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=116.8
Q ss_pred eCCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeC----C-------CcEEEEeccccee--eecccccc
Q 001190 850 TGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----D-------STIHIYNVRVDEV--KSKLKGHQ 915 (1128)
Q Consensus 850 ~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~----d-------g~v~iwd~~~~~~--~~~l~~h~ 915 (1128)
++..+.+||..+.+-.. .+..........+... ++++++.|+. + ..+.+||..+++- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 33679999998877433 2222223333334444 7788888873 1 1277888877642 22222111
Q ss_pred cCeeEEEEcCCCCEEEEEcCC--------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEec----
Q 001190 916 KRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE---- 983 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d---- 983 (1128)
..-..+.+ ++++++.|+.+ ..+.+||..+.+-.. .... .....-..++. -+++.++.|..
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~--p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPL--PYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCC--SSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCC--CCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 11122222 56777777742 458899988754211 1111 11111122222 45555555431
Q ss_pred ---CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEecCCCceEEEeCCCCCCCCcc
Q 001190 984 ---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSV 1055 (1128)
Q Consensus 984 ---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1055 (1128)
..+.+||..+.+-...-... .......+..-++++++.|+.++ .+.+||+.+.+-... .. ++...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r 234 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQ---TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EA---FPQER 234 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CC---CSSCC
T ss_pred cccceEEEEeCCCCeEEECCCCC---CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CC---CCCcc
Confidence 46899998876432221111 11111122233778778887654 588999988754433 21 11111
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCC--------------cEEEEcCCCCCCCcccC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDG--------------SVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg--------------~i~iWd~~~~~~~w~~~ 1101 (1128)
. .| ..+.+ ++.+++.|+.++ .+.++|+.+.+ |...
T Consensus 235 ~--~~----~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 S--SL----SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp B--SC----EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred c--ce----eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 1 11 12222 467888888643 36677777754 9876
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.5 Score=53.18 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=62.4
Q ss_pred CeeEEEeccCCCeEEEEeC-CeEEEEECCCceEE--EEeeC------CCCCeeEEEEcCC---CCCEEEEEeC-------
Q 001190 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTFKVM--TTFMS------PPPASTFLAFHPQ---DNNIIAIGTE------- 893 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------~~~~v~~l~~s~~---d~~~lasg~~------- 893 (1128)
....++|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 47988887655432 22221 2345779999994 4544444432
Q ss_pred -----CCcEEEEecccc-------eeee-cccc-cccCeeEEEEcCCCCEEEEEcC
Q 001190 894 -----DSTIHIYNVRVD-------EVKS-KLKG-HQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 894 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1111 1221 1123678999999998887653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.6 Score=50.64 Aligned_cols=235 Identities=9% Similarity=0.085 Sum_probs=115.5
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC---CCEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 421 (1128)
...+.++|.|||+++++ +...|.|.+++.. ++... .+. + . . .+..........++|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~-----~--~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--G-----V--P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--S-----C--C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--C-----C--c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 35789999999984444 3467899988853 32210 000 0 0 0 012223456789999996 4544
Q ss_pred EEEe-C-------CCeEEEEEccCCC-cc---eece-eec---ccccceeEEEEecCCCeEEEEEecC------------
Q 001190 422 GVAF-T-------KHLIQLYSYAGSN-DL---RQHS-QID---AHVGAVNDLAFAYPNKLLCVVTCGD------------ 473 (1128)
Q Consensus 422 as~~-~-------d~~i~vwd~~~~~-~~---~~~~-~~~---~h~~~v~~l~fs~d~~~~~l~s~s~------------ 473 (1128)
..+. . ...|..|++..+. .+ +.+. .+. .....-..++|.|||. +++..|..
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~ 162 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKL 162 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCC
Confidence 4442 2 2356667665431 11 1110 111 1111236799999996 24444332
Q ss_pred CCeEEEEecCCCe-------------EEEe-cCCCCCeEEEeccCCCCccEEEEEecc--CcEEEEecCCCCc-------
Q 001190 474 DKLIKVWELSGRK-------------LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGS------- 530 (1128)
Q Consensus 474 d~~i~vWd~~g~~-------------~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~------- 530 (1128)
.+.|.-.+.+|.. ...+ .+|. ....++|.+. ++ .|+++... +.=.+.-+..+..
T Consensus 163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (353)
T 2g8s_A 163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SN-ALWLNEHGPRGGDEINIPQKGKNYGWPLAT 239 (353)
T ss_dssp TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TT-EEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CC-CEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence 2456666655531 1111 2333 3567788663 33 44444322 1112222211110
Q ss_pred ------------------------eeeecCCCCeEEEEEEcC-------CCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 531 ------------------------RVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 531 ------------------------~~~~~~~~~~i~~~~~s~-------~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
...+. +...+..++|.. +|.++++.. ..+.|...++..++....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~----~~~~v~~~~~~~~~~~~~ 314 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL----KDKDVIVMSVNGDKVTED 314 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET----TTTEEEEEEEETTEEEEE
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc----cCCEEEEEEeCCCeEeee
Confidence 00111 123466777764 355555443 366777777765543322
Q ss_pred --eccccCCceeEEEEeCCCCEEEE
Q 001190 580 --YAGFRKKSNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 580 --~~~~~~~~v~~~~~~~~~~~l~~ 602 (1128)
+.......+..+++.|+|...++
T Consensus 315 ~~~~~~~~~rp~~v~~~pdG~lyv~ 339 (353)
T 2g8s_A 315 GRILTDRGQRIRDVRTGPDGYLYVL 339 (353)
T ss_dssp EEESGGGCCCEEEEEECTTSCEEEE
T ss_pred EEcccCCCCceeEEEECCCCcEEEE
Confidence 21111225677888898875554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.088 Score=56.22 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=122.7
Q ss_pred eccCCCeEEEEe-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeC----C-----CcEEEEecc
Q 001190 839 LSKNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTE----D-----STIHIYNVR 903 (1128)
Q Consensus 839 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 903 (1128)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++. . ++++++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334666777665 2 458999998776433211111111 12222 2 6778888776 2 468889987
Q ss_pred ccee--eecccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 904 VDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 904 ~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-..... .. ....-..++.. +++
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p--~~r~~~~~~~~-~~~ 170 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---ML--TRRIGVGVAVL-NRL 170 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CS--SCCBSCEEEEE-TTE
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CC--ccccceEEEEE-CCE
Confidence 7642 2222211112222222 67777777644 358889988754221111 11 11111222222 566
Q ss_pred EEEEEe------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEe
Q 001190 977 RMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 977 ~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~ 1045 (1128)
.++.|. -..+.+||..+..-...-..... ...-..+. -++++++.|+.+ ..+.+||+.+.+-.. +
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~ 246 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF-V 246 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-C
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE-C
Confidence 666543 24688999887654322111110 11112222 377777777754 569999998875433 2
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCCC
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
.. ++.... .+ ..+.. ++.+++.|+.+ ..+.+||+.+.+ |...++.
T Consensus 247 ~~---~p~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~ 296 (308)
T 1zgk_A 247 AP---MKHRRS--AL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRM 296 (308)
T ss_dssp CC---CSSCCB--SC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEEC
T ss_pred CC---CCCCcc--ce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCC
Confidence 21 111111 11 11222 46788888754 357788888754 9876443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=63.31 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=127.7
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeeeccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLK 912 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~ 912 (1128)
..+.-++|..+.+|.-.+..+.|||+++...+..+.- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 3456678888888887788899999998877766653 33566666654 34555554 67899999974 35555565
Q ss_pred cc----ccCeeEEEEcCCCCEEEEEcC-------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc--C-CCCEE
Q 001190 913 GH----QKRITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN--A-DQVRM 978 (1128)
Q Consensus 913 ~h----~~~V~~l~~s~d~~~l~s~~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~-d~~~l 978 (1128)
-| ...|..-..+++.++++..|- .|.+.+|.++.+.. +...+|. .....+... + ....+
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha-~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHA-ASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhH-hhhheeccCCCCCCceEE
Confidence 55 456778888999998886543 47788998876542 1122222 111111111 1 12223
Q ss_pred EEEe----cCeEEEEecCCc---cc------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 979 LVVH----ETQLAIYDASKM---ER------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~~----d~~i~v~d~~~~---~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
+.+. .+.+.|-++... .. +..+.+++.-..-..++..|+.-..++.-+.-|.|++||++||..+..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3222 368888888543 11 1112222222333457778888788888889999999999999987765
Q ss_pred C
Q 001190 1046 A 1046 (1128)
Q Consensus 1046 ~ 1046 (1128)
+
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 5
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.23 Score=52.77 Aligned_cols=229 Identities=6% Similarity=-0.033 Sum_probs=112.0
Q ss_pred CEEEEEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEe-cCCCeEE--E
Q 001190 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLF--N 489 (1128)
Q Consensus 419 ~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd-~~g~~~~--~ 489 (1128)
..++.|+. ...+.+||..+++-.. ...+......- .+..-++. +++.|+.+ ..+.++| .++.-.. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~--~~~~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDA--ACVFWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSC--EEEEETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCccccee--EEEEECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568899988765322 11121111111 12223555 56666654 5788889 5543222 1
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccC
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
+.........+.+ ++.+++.|+.+ ..+.+||..+..=...-..... ...++. -+++.++.++....
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2111111122222 45677777765 4577888765432221111111 112222 36666666665332
Q ss_pred C-----CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEecCCCCCC
Q 001190 562 G-----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 562 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
. ...+.+||..+.+-...-.......-..++.. ++..++.|+.+ ..+.+||..+.+....-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 45688999988754332211111111222222 55666666543 4689999988765443222211111
Q ss_pred cceEEEcCCCCEEEEEEcC-----CcEEEEEcccC
Q 001190 632 LPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1128)
..++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 122222 66777777754 45777777654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.15 Score=55.79 Aligned_cols=238 Identities=14% Similarity=0.090 Sum_probs=114.6
Q ss_pred CCCeEEEEe--CCeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeC-C---------CcEEEEecccc
Q 001190 842 NDSYVMSAT--GGKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRVD 905 (1128)
Q Consensus 842 dg~~la~~~--dg~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~~~ 905 (1128)
++++++.|+ ...+.+||..+ .+ .+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777775 45699999864 22 222222111111222222 6778888876 2 46889998876
Q ss_pred ee--eecccccccCeeEEEEcCCCCEEEEEcCC---------------------------------------CcEEEEEC
Q 001190 906 EV--KSKLKGHQKRITGLAFSTSLNILVSSGAD---------------------------------------AQLCVWSI 944 (1128)
Q Consensus 906 ~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D---------------------------------------g~i~iwd~ 944 (1128)
+- +..+. ........+...++++++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 42 22222 01111122222577888888865 46889998
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-------cCeEEEEec--CCccc--ccccccCCCCCCCeEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------ETQLAIYDA--SKMER--IRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d~~i~v~d~--~~~~~--~~~~~~~~~h~~~v~~l 1013 (1128)
.+.+-.... ...... .....++.. +++.++.+. ...+.+||+ .+..- +..+... .......
T Consensus 176 ~~~~W~~~~--~~p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~~ 247 (357)
T 2uvk_A 176 STQQWSYAG--ESPWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGGF 247 (357)
T ss_dssp TTTEEEEEE--ECSSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSCE
T ss_pred CCCcEEECC--CCCCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccce
Confidence 875432221 111111 111233333 455555532 235777876 33322 1111111 1111222
Q ss_pred EEeeCCCEEEEEecC----------------------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 1014 VYSCNSQLVFATFCD----------------------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
+...++++++.|+.+ ..+.+||+.+.+-...-. ++.... .| .++.+
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~--~~----~~~~~-- 315 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRA--YG----VSLPW-- 315 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCB--SS----EEEEE--
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcc--cc----eeEEe--
Confidence 334577777777632 257899998765433221 111111 11 12222
Q ss_pred CCCCEEEEEECCC------cEEEEcCCCCCCCcccCCCCC
Q 001190 1072 LEPNQFAIGLTDG------SVKVMEPSESEGKWGVSPPVD 1105 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg------~i~iWd~~~~~~~w~~~~p~~ 1105 (1128)
++.+++.|+.++ .|.+.++.+ .||.+..|..
T Consensus 316 -~~~i~v~GG~~~~~~~~~~v~~l~~~~--~~~~~~~~~~ 352 (357)
T 2uvk_A 316 -NNSLLIIGGETAGGKAVTDSVLITVKD--NKVTVQNLEH 352 (357)
T ss_dssp -TTEEEEEEEECGGGCEEEEEEEEEC-C--CSCEEEC---
T ss_pred -CCEEEEEeeeCCCCCEeeeEEEEEEcC--cEeEeeeccc
Confidence 578889999664 234446665 5599988764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.26 Score=52.34 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=109.3
Q ss_pred CCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-cCCCeE
Q 001190 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (1128)
Q Consensus 418 g~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~~g~~~ 487 (1128)
+..++.|+.+ ..+..||..+.+-.. ...+...... .+++ .-++. +++.|+.+ ..+.+|| .+++-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 357888887764222 1111111111 1122 22555 56666644 3578888 444322
Q ss_pred E--EecCCCCCeEEEeccCCCCccEEEEEeccC-----cEEEEecCCCCceeeecCCC--CeEEEEEEcCCCCeEEEeee
Q 001190 488 F--NFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 488 ~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~ 558 (1128)
. .+.........+.+ ++.+++.|+.++ .+.+||+.+..-...-.... ....++. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 1 11111111122222 456777777653 46677765543222111111 1112222 35666666665
Q ss_pred ccCC---CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEecCCCCC
Q 001190 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 559 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+... ...+.+||..+.+-...-.......-.+++. -++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3468899988765433211111111112222 255666667653 4689999988765543322211
Q ss_pred CcceEEEcCCCCEEEEEEcCC-----cEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1128)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111112223667777777543 4777777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.24 Score=61.90 Aligned_cols=241 Identities=13% Similarity=0.157 Sum_probs=143.9
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++-.+|..+ ++|.=. ..++.|+|+++...+.... + ...|.-=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~-----------------~---~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-----------------M---TDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc-----------------c---CCCceEEEecCCC-eeEEEc-CC
Confidence 344577776 666643 6799999999887764311 1 2356666665443 344333 34
Q ss_pred eEEEEEccCCCcceeceeeccc----ccceeEEEEecCCCeEEEEEec------CCCeEEEEecCCCeEEEecCCCCCeE
Q 001190 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
.|.-|++.+..... ..+..| ...|..-.-+++.++ ++++|- -.|.+.++..+.+.-+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 69999997532211 124444 456777888899996 333332 34788999977777778888877665
Q ss_pred EEeccCCCCccEEEEEec----cCcEEEEecCCC---Ccee-----e-ecC---CCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 499 SICPHHKENIQFIFSTAI----DGKIKAWLYDTM---GSRV-----D-YDA---PGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~---~~~~-----~-~~~---~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.+...+....+++-.. .+.+++-++... .... . +.. ...-..++..|+.-..+...+ .
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it----k 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----K 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe----c
Confidence 555432222223333222 268888887543 1111 0 111 123445677788777776666 4
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
-|.++++|+.+|.++..-+-... .|...+......-+++....|.|.--.++....+.
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 88999999999998766554333 45444444444456666677776666665554443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.027 Score=59.99 Aligned_cols=203 Identities=9% Similarity=0.078 Sum_probs=108.7
Q ss_pred CEEEEEeCCCcEEEEecccceeeeccccc-ccCeeEEEE---cCCCCEEEEE-cCCCcEEEEECCCCcccceeEEeecCC
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAF---STSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAG 960 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~ 960 (1128)
.+++.++.||.|+-.|..+|+.+-+++.. ..++....- ..++..++.. +.||.|..++..+|.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999999988877654 122222110 0123333333 589999999998885443222221110
Q ss_pred CCCCCccE---EEE------cCCCCEEEEEecCeEEEEecCCcccccccccCCCCC----CCeEEEEEe-----eCCCEE
Q 001190 961 KTPTGDTR---VQF------NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS----APISCAVYS-----CNSQLV 1022 (1128)
Q Consensus 961 ~~~~~v~~---v~~------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~----~~v~~l~~s-----~dg~~l 1022 (1128)
..+... ... +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+..|
T Consensus 91 --~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 91 --TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp --TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred --ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 011110 001 244544445669999999999999988876532100 001111111 124567
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCc
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1098 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w 1098 (1128)
+.+..+..+.+.+ .+|+ +.......+..... .... ......+. |+.+ +.++.||.|.-.|..+|+.+|
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~---~~~~-~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL---DVPL-ALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTT---THHH-HTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEeccccccccc---cccc-cccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 7788888888777 5564 32221000000000 0000 00000011 3444 558999999999999999999
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.94 E-value=1 Score=50.26 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceE-------------EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~-------------~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
......+.++|||+++++++ +.++.|+|++.... ..+.. -.-.....+|.+ +|....+..-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456789999999999987 78899999874211 22222 234567899999 787667777999
Q ss_pred cEEEEecccc----------eeeecccccccCeeEE-----EEcCCCCEEEEE---cCCCcE----------EEEECCCC
Q 001190 896 TIHIYNVRVD----------EVKSKLKGHQKRITGL-----AFSTSLNILVSS---GADAQL----------CVWSIDTW 947 (1128)
Q Consensus 896 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l-----~~s~d~~~l~s~---~~Dg~i----------~iwd~~~~ 947 (1128)
.|.-|++... ..+.++..|-.+.... .-.+||++|++. +.|+.+ .+.|+...
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 9999999764 3445555553332221 125799999987 456543 67787654
Q ss_pred c
Q 001190 948 E 948 (1128)
Q Consensus 948 ~ 948 (1128)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.57 Score=49.97 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred EeccCCCeEEEEe-----CC-------eEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCC--------Cc
Q 001190 838 ALSKNDSYVMSAT-----GG-------KISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED--------ST 896 (1128)
Q Consensus 838 ~~s~dg~~la~~~-----dg-------~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~d--------g~ 896 (1128)
+...++++++.|+ ++ .+.+||..+.+-...-....... .+++.. ++++++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345777777665 11 27788988765422111111111 122222 66777887743 45
Q ss_pred EEEEecccce--eeecccccccCeeEEEEcCCCCEEEEEcC-C-----CcEEEEECCCCcccceeEEeecCCCCCCCccE
Q 001190 897 IHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGA-D-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 968 (1128)
Q Consensus 897 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 968 (1128)
+.+||..+.+ .+..+......-..+ ..++++++.|+. + ..+.+||..+.+-.. +.. .........
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~--~p~~r~~~~ 191 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAP--MQTARSLFG 191 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCC--CSSCCBSCE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCC--CCCchhceE
Confidence 8899988763 222222211111122 246677777776 2 468899988754221 111 111111122
Q ss_pred EEEcCCCCEEEEEe-c-----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC--------------
Q 001190 969 VQFNADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-------------- 1028 (1128)
Q Consensus 969 v~~s~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-------------- 1028 (1128)
++.. +++.++.|. + ..+.+||..+.+-...-... .......+..-++++++.|+.+
T Consensus 192 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 267 (315)
T 4asc_A 192 ATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---QERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267 (315)
T ss_dssp EEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---CcccceeEEEECCEEEEECCccccCcCCcccccccc
Confidence 2222 556666653 2 25889998876443322111 1111112223377777777754
Q ss_pred CcEEEEecCCCceEEE
Q 001190 1029 GNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~ 1044 (1128)
..+.+||+++.+-...
T Consensus 268 ~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 268 NDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred CcEEEecCCCChhhhh
Confidence 2478899988765443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.95 Score=48.27 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=112.9
Q ss_pred CeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeC----CC-------cEEEEecccceee--ecccccccC
Q 001190 852 GKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----DS-------TIHIYNVRVDEVK--SKLKGHQKR 917 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 917 (1128)
..+.+||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 348899998876543 2222122333333444 7788888883 12 1778888765432 222211111
Q ss_pred eeEEEEcCCCCEEEEEcCC-------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-------c
Q 001190 918 ITGLAFSTSLNILVSSGAD-------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------E 983 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d 983 (1128)
-..+.+ ++++++.|+.+ ..+.+||..+.+-.. ...... ...-..++. .+++.++.|. -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPI--KVYGHNVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE---ECCCSS--CEESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE---CCCCCC--cccccEEEE-ECCEEEEEcCCCCCCCcc
Confidence 122222 66777777754 247788887754211 111110 011112222 4566666542 1
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCCCCCcccCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1128)
..+.+||..+.+-...-.... ...-.++ ..-++++++.|+.+ ..+.+||+++.+-... .. ++....
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r~-- 245 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKT--PRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQERS-- 245 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSS--CCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCCB--
T ss_pred ceEEEEcCCCCEEEECCCCCC--CcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCccc--
Confidence 358999988765332211111 1111122 22377777777643 3578899988764332 21 111111
Q ss_pred CCccceEEEEEecCCCCEEEEEECC--------------CcEEEEcCCCCCCCcccC
Q 001190 1059 SQTVYPLVVAAHPLEPNQFAIGLTD--------------GSVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1059 ~~~~~~~~~~~~p~~~~~l~s~~~d--------------g~i~iWd~~~~~~~w~~~ 1101 (1128)
.| ..+.+ ++.+++.|+.+ ..+.++|+.+.+ |...
T Consensus 246 ~~----~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 246 SI----SLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp SC----EEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEE
T ss_pred ce----EEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhh
Confidence 11 11222 46788888764 357778887754 9876
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.085 Score=51.30 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=82.8
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceE------EEEee-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~-~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+- .--..-.++.|.+ ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5779999999998888 888877666644211 11111 0011147899999 8888877 5699988876432
Q ss_pred eeeecc-------cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccccee--EEeecCCCCCCCccEEEEcCCCC
Q 001190 906 EVKSKL-------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV--TIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 906 ~~~~~l-------~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
....-+ .+-=..+..|.|.|+|.+.+.. |+.+.-+..-++...... ......... ...+.+.|.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-DTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-GGEEEEEECTTSC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-ceEEEEEECCCCc
Confidence 111111 1111467899999999887766 776433322211100000 000000000 2334567899998
Q ss_pred EEEEEecCeE
Q 001190 977 RMLVVHETQL 986 (1128)
Q Consensus 977 ~l~~~~d~~i 986 (1128)
..++. ++.+
T Consensus 195 l~~v~-~g~~ 203 (236)
T 1tl2_A 195 LFGVQ-GGKF 203 (236)
T ss_dssp EEEEE-TTEE
T ss_pred EEEEe-CCeE
Confidence 88877 5543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.62 Score=49.45 Aligned_cols=231 Identities=6% Similarity=-0.047 Sum_probs=109.7
Q ss_pred cCCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC----C-----CeEEEEe-
Q 001190 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE- 481 (1128)
Q Consensus 416 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~----d-----~~i~vWd- 481 (1128)
-++..++.|+.+ ..+.+||..+++-... ..+...... .+++ .-++. +++.|+. + ..+.++|
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSG-LAGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEE-EETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCccccc-ceEE-EECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356677777632 3588999887643221 111111111 1222 22555 5666665 2 4578888
Q ss_pred cCCCeEEEec---CCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCC
Q 001190 482 LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGS 551 (1128)
Q Consensus 482 ~~g~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~ 551 (1128)
.+++- ..+. ........+.+ ++.+++.|+.+ ..+.+||..+..-...-... .....++.+ +++
T Consensus 98 ~~~~W-~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 98 MTNQW-SPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp TTTEE-EECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCeE-eECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 44432 2221 11111122222 45677777654 35777777654322211111 111122222 566
Q ss_pred eEEEeeeccCC-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEec
Q 001190 552 RLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 552 ~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 625 (1128)
.++.++.+... ...+.+||..+.+-...-.......-..++.. ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 66666643221 35688899887653322111111111122222 55666666654 5699999988765543222
Q ss_pred CCCCCCcceEEEcCCCCEEEEEEcC-----CcEEEEEcccC
Q 001190 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1128)
.... .-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1112222 256777777643 34666776554
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=47.22 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC--HHHHHHHhhccCHHHHHHHHc
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLS 58 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1128)
++|+.+-|++||..+||.+++.+|.+|.+++.+ ...-..-+++-.|..++.+-.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 579999999999999999999999999998875 122345566667765554433
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.62 E-value=2.7 Score=44.09 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=98.8
Q ss_pred EEEEeCCCCcEEEEeecc-------------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 349 SMDFHPSHQTLLLVGSSN-------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+--|+++|.++..+...+ ..|+..+++.++... +... .+.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999777666543 356666666554221 1111 123788
Q ss_pred cCCCEEEEEe--CC--CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec
Q 001190 416 PDGNYVGVAF--TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1128)
Q Consensus 416 pdg~~las~~--~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~ 491 (1128)
++|++|+-.. .+ ..|..-+++... .+ .+..+.. .+|+++++. +..+......|.+-+.+|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 33 345555655433 22 2333432 457888985 3334444678888886666555553
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
. +... ..++| ++.+|+-...++ .|..-+++.... ..+.. ..+ ..++|++++|..+... +...|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 23444 445665554433 444445544332 22222 223 3478899998765321 23567777
Q ss_pred eCCCCc
Q 001190 570 NESEGT 575 (1128)
Q Consensus 570 d~~~~~ 575 (1128)
++....
T Consensus 252 ~~DG~~ 257 (302)
T 3s25_A 252 KNDGTG 257 (302)
T ss_dssp ETTSCC
T ss_pred ECCCCc
Confidence 765443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.57 E-value=3.1 Score=44.42 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC---CC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 419 (1128)
.-...+.++|.|||+ ++++-...|.|++++..+++......+ ..+.....+....|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345689999999998 666654489999988665543210000 0112334677899999996 34
Q ss_pred EEEEE-e--CCCeEEEEEccCCC----c---ceece-eec-ccccceeEEEEecCCCeEEEEEe
Q 001190 420 YVGVA-F--TKHLIQLYSYAGSN----D---LRQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (1128)
Q Consensus 420 ~las~-~--~d~~i~vwd~~~~~----~---~~~~~-~~~-~h~~~v~~l~fs~d~~~~~l~s~ 471 (1128)
+|... + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44432 2 34556667665521 1 11111 121 1122356799999997 44543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.82 Score=48.11 Aligned_cols=201 Identities=9% Similarity=0.043 Sum_probs=112.5
Q ss_pred EecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc--------------CcEEEEe
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWL 524 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~~wd 524 (1128)
|+.+|..+++.....++.|...+.+|.....+.... +..+ ++ ++.+|+-+... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~~i--~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AMYI--NA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EEEE--EE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--eeeE--EE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 445677544444444667777777776665554321 2323 22 44566655442 3566666
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
++.......... . +..+++++++|+......++...|+..++..... ..+..+.. ..++++++.|+..+
T Consensus 95 ~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc-----eEeeEECCEEEEEe
Confidence 665543332221 1 2367789999987652223577788888875443 33333221 34577888888776
Q ss_pred C-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC--cEEEEEcccCccccccccCCccccccCcce
Q 001190 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1128)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (1128)
. ...|++-++..+....... +. . ...++|++.+|+-....+ .|..-++.... .+.+.. ..+
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~~---~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~-------~~~- 227 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--CN---C-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE-------ANI- 227 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--SC---E-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC-------SCE-
T ss_pred CCCceEEEEECCCCCEEEEeC--CC---c-cceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC-------CCc-
Confidence 5 6788888988776544332 21 1 234668888888776543 45444444432 122211 111
Q ss_pred eeeeeccccccc
Q 001190 682 SVALKVSASSAV 693 (1128)
Q Consensus 682 ~~~~s~~g~~l~ 693 (1128)
..++|++..|.
T Consensus 228 -~~~~~~g~~Iy 238 (302)
T 3s25_A 228 -EHYNVYGSLIF 238 (302)
T ss_dssp -EEEEEETTEEE
T ss_pred -ceEEECCCEEE
Confidence 24778887774
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.26 Score=47.95 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=82.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--------eeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR--------ITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
..++.++|+| ++.+.++ .+|.++-.+..++... .+.+-... -.++.|.++|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3678999999 8988777 6787776665442221 11111222 378999999998887 5688877765
Q ss_pred CCCcccceeE--EeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccc-----cccCCCCCCCeEEEEEee
Q 001190 945 DTWEKRKSVT--IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQ-----WTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 945 ~~~~~~~~~~--~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~-----~~~~~~h~~~v~~l~~s~ 1017 (1128)
-+......+- ..+....- ..+..|.|.|+|.+.++. ++.++-....+.....- ..... .-..-.-+.|++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~ 191 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSS 191 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECT
T ss_pred CcCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECC
Confidence 3321111100 00000000 356889999999999998 88865444332221111 00100 022334466888
Q ss_pred CCCEEEEEecCC
Q 001190 1018 NSQLVFATFCDG 1029 (1128)
Q Consensus 1018 dg~~l~t~~~dg 1029 (1128)
+|.+.++. +|
T Consensus 192 ~G~l~~v~--~g 201 (236)
T 1tl2_A 192 VGTLFGVQ--GG 201 (236)
T ss_dssp TSCEEEEE--TT
T ss_pred CCcEEEEe--CC
Confidence 88766655 55
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.56 Score=50.13 Aligned_cols=194 Identities=9% Similarity=0.016 Sum_probs=97.9
Q ss_pred EeccCCCeEEEEeC-----C-------eEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEeCC-------CcE
Q 001190 838 ALSKNDSYVMSATG-----G-------KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTED-------STI 897 (1128)
Q Consensus 838 ~~s~dg~~la~~~d-----g-------~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~~d-------g~v 897 (1128)
+...++++++.|+. + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457777777751 1 1778888776543221111111 1222222 66788888754 257
Q ss_pred EEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEE
Q 001190 898 HIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1128)
Q Consensus 898 ~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 969 (1128)
.+||..+.+- +..+......-..+. .++++++.|+.+ ..+.+||+.+.+-.. ..... .......+
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p--~~r~~~~~ 202 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMK--TPRSMFGV 202 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE---ECCCS--SCCBSCEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE---CCCCC--CCcccceE
Confidence 8888876532 222221111111222 467777777642 358899998754221 11111 11111223
Q ss_pred EEcCCCCEEEEEe-c-----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC--------------C
Q 001190 970 QFNADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--------------G 1029 (1128)
Q Consensus 970 ~~s~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--------------g 1029 (1128)
+. -+++.++.|. + ..+.+||..+.+-...-... .......+...++++++.|+.+ .
T Consensus 203 ~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 203 AI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP---QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS---SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC---CcccceEEEEECCEEEEECCeeccCCCCceeccceee
Confidence 33 2556666543 1 35778998876533221111 1111112223467777777654 4
Q ss_pred cEEEEecCCCceEEE
Q 001190 1030 NIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1030 ~i~vwd~~~~~~~~~ 1044 (1128)
.+.+||+++.+-...
T Consensus 279 ~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM 293 (318)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEehhh
Confidence 588999988765444
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.56 Score=50.71 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=86.2
Q ss_pred cCcEEEEecCCCCceeeecCC----CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc------------eeeEe
Q 001190 517 DGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IKRTY 580 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 580 (1128)
++.||..++.....-..+... -..|..+..||+|++|+..+ +..|.|..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 466666666533322223332 22577799999999999986 7788888877332 11223
Q ss_pred ccc-----cCCceeEEEEeCCC---CEEEEEECCCcEEEEECCCCe--ee------EEEecCCCCCCcceEEEcCCCCEE
Q 001190 581 AGF-----RKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVN--IL------TSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 581 ~~~-----~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~--~~------~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
.-. ....|..+.|+|-+ ..|++-..|+.|++||+.... +. ..+........|.+++|.+++-.|
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence 221 12358889999854 689999999999999997522 22 112222223467888998887777
Q ss_pred EEEE--cCCcEEEE
Q 001190 645 AVTT--ADNGFKIL 656 (1128)
Q Consensus 645 ~~~~--~dg~i~iw 656 (1128)
.+.+ .+|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 7755 66776543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.051 Score=57.91 Aligned_cols=196 Identities=10% Similarity=0.003 Sum_probs=101.1
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCC-CCCeeEEEE--cCCCCCEEEEE-eCCCcEEEEecccceeeecccc----cc
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAF--HPQDNNIIAIG-TEDSTIHIYNVRVDEVKSKLKG----HQ 915 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~--s~~d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~----h~ 915 (1128)
.+++++ ||.|.-+|..+|+.+.++... ..++....- .+.++..++.. +.||.|+.++..+|.....+.. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 444454 999999999999999888754 112211110 01133444443 6899999999888854433221 11
Q ss_pred cCeeE---EEE-----cCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC----CCCCccEEEEc--CCCCEEEEE
Q 001190 916 KRITG---LAF-----STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK----TPTGDTRVQFN--ADQVRMLVV 981 (1128)
Q Consensus 916 ~~V~~---l~~-----s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~s--~d~~~l~~~ 981 (1128)
.++.. ..+ +..+..+++++.+|.+...|+.+|+.+..+......+. .........+. ..+..++.+
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig 171 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIG 171 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEe
Confidence 22211 000 01345778899999999999999998766543322110 00000000010 112345554
Q ss_pred -ecCeEEEEecCCcccccccccCCCCCCCeE-----EEEEeeCCCEEEEEecCCcEEEEecCCCceEE
Q 001190 982 -HETQLAIYDASKMERIRQWTPQDALSAPIS-----CAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 982 -~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~-----~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
.+..+.+.+ .+|+ +..+.........+. ...++.|+++ ++++.||.|.-+|..+|+.+.
T Consensus 172 ~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 172 KTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 355666655 4443 211110000000000 0011245776 447889999999999999876
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.74 E-value=1.7 Score=48.64 Aligned_cols=196 Identities=9% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEc--CCCCCEEEEEeC-------CCcE---------EEE
Q 001190 842 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGTE-------DSTI---------HIY 900 (1128)
Q Consensus 842 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s--~~d~~~lasg~~-------dg~v---------~iw 900 (1128)
||+||..-. +..|...+++..++-..+.-. ...+..++|- | +..+++.+++ ||.. .+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 788998887 577999999999887666543 3467788876 5 6667776652 3321 111
Q ss_pred ---ecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC---------------cEEEEECCC-------Cc--ccc--
Q 001190 901 ---NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA---------------QLCVWSIDT-------WE--KRK-- 951 (1128)
Q Consensus 901 ---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg---------------~i~iwd~~~-------~~--~~~-- 951 (1128)
|..+-+....+.- .+....+...++|++.++.+.+. .+.++++.. |+ .+.
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1111111111100 11222344566777777665431 244555421 11 011
Q ss_pred eeE-EeecC----C-------CCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccc---------cccccCCCCCC
Q 001190 952 SVT-IHIPA----G-------KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERI---------RQWTPQDALSA 1008 (1128)
Q Consensus 952 ~~~-~~~~~----~-------~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~---------~~~~~~~~h~~ 1008 (1128)
..+ +.... . ..+.....+.++|||++++++. +.++.|+|+.+.... ..........-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 000 00000 0 0014566789999999999986 788999999853220 00111111156
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
.....+|.++|....+-.-|..|..|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 6788999999954445668999999999764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.70 E-value=1.8 Score=46.87 Aligned_cols=198 Identities=4% Similarity=-0.083 Sum_probs=93.8
Q ss_pred CCCeEEEEeC-----------CeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCC---------------
Q 001190 842 NDSYVMSATG-----------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTED--------------- 894 (1128)
Q Consensus 842 dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~d--------------- 894 (1128)
++++++.|+. +.+.+||..+.+-...-... .......+... ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcC
Confidence 6666666542 34889999876533221111 22222212223 77888888865
Q ss_pred ------------------------CcEEEEecccce--eeecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEE
Q 001190 895 ------------------------STIHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVW 942 (1128)
Q Consensus 895 ------------------------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iw 942 (1128)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEE
Confidence 478899987653 232222111110122222 56677777642 357778
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c----------------------CeEEEEecCCcccccc
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E----------------------TQLAIYDASKMERIRQ 999 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d----------------------~~i~v~d~~~~~~~~~ 999 (1128)
|++..... ...+....... ......+...+++.++.|. + ..+.+||..+.+-...
T Consensus 223 d~d~~~~~-W~~~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 223 DFTGNNLK-WNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp ECC---CE-EEECCCSSTTT-CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EecCCCCc-EEecCCCCCCc-ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 77322111 11111111110 1112223334556666543 1 2577899886643222
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecCC------cEEEEecCCCceEEEeC
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCDG------NIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg------~i~vwd~~~~~~~~~~~ 1046 (1128)
-... .......+...++++++.|+.++ .|.++++++++.+....
T Consensus 301 ~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 301 GELS---QGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EECS---SCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCC---CCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 1111 11111223445788888888543 36667888877765544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.43 E-value=2.2 Score=47.90 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee--eecccc------cccCeeEEEEcCC---CC-EEEEEcC-----
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKG------HQKRITGLAFSTS---LN-ILVSSGA----- 935 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---~~-~l~s~~~----- 935 (1128)
.....++|.| +|+++++-...+.|++++..+++. +..+.. ..+....|+|+|| +. +.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777655445788887655533 222221 2356779999995 44 4444332
Q ss_pred -------CCcEEEEECCCCc--c--cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 936 -------DAQLCVWSIDTWE--K--RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 936 -------Dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
...|.-|++..+. . ...+....... .......|+|.|||.+.++..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 1345555554321 1 11111112211 124578999999998777743
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.18 E-value=3.4 Score=42.89 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=113.3
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
.|..++....- .++.. ||.|..|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654332 23333 78888886543211111111123577777753 334444 5 9999999865422111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
.-...|..++...+. .+... ||.|..|-.....++... . .....+..++.-.+...+ .. ++.+..|-..
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~-~-----~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n 167 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVP-A-----EAQSGVTALDGGVYTALA-VK-NGGVIAWGDN 167 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCC-G-----GGGSSEEEEEECSSEEEE-EE-TTEEEEEECC
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCC-c-----cCCCCeEEEEcccCEEEE-EE-CCEEEEecCC
Confidence 112467777776543 33334 899999987654332210 0 011345555544443332 23 7899988776
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
....+...... ...|..++-..+ +.+.- .||.|+.|-....-.+. .+... ...+..++...
T Consensus 168 ~~gqlg~p~~~---~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg-------~p~~~-----~~~v~~i~~G~- 228 (282)
T 3qhy_B 168 YFGQTTVPAEA---QSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT-------VPTEA-----LSGVSAIASGE- 228 (282)
T ss_dssp TTSTTSCCGGG---GSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC-------CCGGG-----GSSCCEEEECS-
T ss_pred CCCCCCCceec---CCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC-------CCccc-----CCCceEEEcCC-
Confidence 54443321111 456777765433 33333 69999999765432211 11111 11244555433
Q ss_pred CCCEEEEEECCCcEEEEcCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
...++.. ||+|..|-..+
T Consensus 229 -~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 229 -WYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp -SCEEEEE--TTEEEEESTTC
T ss_pred -CEEEEEE--CCEEEEecCCC
Confidence 2444444 99999996544
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.32 Score=44.99 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=55.9
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1128)
+++|.|+-+.||||+..|...+|..|+++--.-+.....+.+++|..+....+..+++....+.. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 39999999999999999999999999987554444556788888887776655554444433333 23344466
Q ss_pred HHHHHh
Q 001190 144 LIELKK 149 (1128)
Q Consensus 144 ~~~l~~ 149 (1128)
+..|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666665
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.73 E-value=15 Score=41.03 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=35.0
Q ss_pred ceEEEEEccCCC-EEEEEeCCCeEEEEEccCCC---cceece-ee-c----ccccceeEEEEecC
Q 001190 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSN---DLRQHS-QI-D----AHVGAVNDLAFAYP 462 (1128)
Q Consensus 408 ~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~---~~~~~~-~~-~----~h~~~v~~l~fs~d 462 (1128)
.-..|+|.|||. .|+++...|.|++++.+... .+..+. .+ . +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999996 56666788999999754321 111110 01 1 12456889999997
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=92.66 E-value=18 Score=43.01 Aligned_cols=246 Identities=9% Similarity=0.054 Sum_probs=121.5
Q ss_pred EEE-EeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccC---CCcceEEEEEccCCCE
Q 001190 349 SMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD---VPISVSRVAWSPDGNY 420 (1128)
Q Consensus 349 ~v~-fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~spdg~~ 420 (1128)
.+. ++|||++++++=|..| .|+++|+.+++.+.. .|. .+ -++ -......++|-.++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~------------~k~~~~~~~~~~~~~W~d~~~~ 198 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI------------TNSGKLLEGKFTYPTWINKDTI 198 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB------------CTTCCBCCEETCCEEEEETTEE
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc------------cccccccccccceeeEECCCEE
Confidence 444 8999996666544433 899999999987642 110 00 000 0001233467633333
Q ss_pred EEEE----------eCCCeEEEEEccCCCcceeceeecccccce-eEEEEecCCCe---EEEEEecCC---CeEEEEecC
Q 001190 421 VGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKL---LCVVTCGDD---KLIKVWELS 483 (1128)
Q Consensus 421 las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v-~~l~fs~d~~~---~~l~s~s~d---~~i~vWd~~ 483 (1128)
+++. +....|+.|.+-+...-.. ..+.+....+ .....+++++. ..+++.+.+ ..+.+.|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 199 IFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp EECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred EEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 3321 1124588887766432111 1243433333 23445667763 135544322 345555633
Q ss_pred ---CCeEEEecCCCCCeEEEeccCCCCccEEEEE----------eccCcEEEEecCCCC-------ceee-ec-CCCCeE
Q 001190 484 ---GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YD-APGHWC 541 (1128)
Q Consensus 484 ---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~~wd~~~~~-------~~~~-~~-~~~~~i 541 (1128)
++ +..+....... +..+. ++.+++.. ...+.|...++.... .... +. .....+
T Consensus 278 ~~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (711)
T 4hvt_A 278 YKNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVF 352 (711)
T ss_dssp SSSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEE
T ss_pred CCCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeE
Confidence 43 23332222211 11111 33444422 245778888887631 1222 22 234467
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeE-eccccCCceeEEEEeCCCCEEE-EEE---CCCcEEEEECC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHFL-AVG---EDSQIKFWDMD 615 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~s---~dg~i~iwd~~ 615 (1128)
..+.+..+ ..+++.. .++...+.+++..+++ .... +.......+......+++..++ +.+ .-+.++.+|+.
T Consensus 353 ~~~~~~~~-~l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 353 NFISTTKD-RVFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECSS-CEEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECC-EEEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 78888876 3444433 2345678888877664 2333 3222223455566666665444 333 34678888876
Q ss_pred CCe
Q 001190 616 NVN 618 (1128)
Q Consensus 616 ~~~ 618 (1128)
++
T Consensus 430 -~~ 431 (711)
T 4hvt_A 430 -HE 431 (711)
T ss_dssp -SC
T ss_pred -Cc
Confidence 44
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.13 Score=46.29 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=43.9
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhh
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQ 129 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 129 (1128)
+++|.|+-+.||||+..|..++|..|+.+.-.-+... .+.+++|..+....+..+++.
T Consensus 32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~ 89 (138)
T 2j4b_A 32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNF 89 (138)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHH
Confidence 3999999999999999999999999998755545445 777888877766555544433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.17 E-value=22 Score=39.66 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=60.0
Q ss_pred CeeEEEeccCCC--eEEEEeCCeEEEEECCCce---EEEEee---------CCCCCeeEEEEcCC---CCCEEEEEeCC-
Q 001190 833 AVPCIALSKNDS--YVMSATGGKISLFNMMTFK---VMTTFM---------SPPPASTFLAFHPQ---DNNIIAIGTED- 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~---~~~~~~---------~~~~~v~~l~~s~~---d~~~lasg~~d- 894 (1128)
....|+|.|||. ++++-..|.|++++..... .+..+. ........|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999995 6665558999999754321 222221 11356788999992 24444443321
Q ss_pred -----------CcEEEEecccc----------eeeeccc----ccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 895 -----------STIHIYNVRVD----------EVKSKLK----GHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 895 -----------g~v~iwd~~~~----------~~~~~l~----~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
..|.-|.+..+ +.+..+. .|. ...|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 13444555321 2222221 243 56899999999888776543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=5.7 Score=47.48 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=104.8
Q ss_pred cCCCeEEEEe-C----CeEEEEECCCceEEEEe-e-----CCCC--CeeEEEEcCCCCCEEEEEeCCC------cEEEEe
Q 001190 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTF-M-----SPPP--ASTFLAFHPQDNNIIAIGTEDS------TIHIYN 901 (1128)
Q Consensus 841 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~~~~--~v~~l~~s~~d~~~lasg~~dg------~v~iwd 901 (1128)
.++.+++.|+ + +.+.+||..+.+-...- . .... .-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777775 2 34889998876543322 1 1111 223344433 567888887543 588899
Q ss_pred cccce--eeecccccccCeeEEEEcCCCCEEEEEcCCC--cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CC
Q 001190 902 VRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV 976 (1128)
Q Consensus 902 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~ 976 (1128)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+.+-........... .......+.+..+ ++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ-NSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG-SCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC-cccceeEEEEeCCCCE
Confidence 88753 332222111111 223324788888888765 68999998754211110000000 0022334555655 56
Q ss_pred EEEEEe---c-----CeEEEEecCCccc-----ccccccCCCCCCCeEEEEEeeCCCEEEEEec--------CCcEEEEe
Q 001190 977 RMLVVH---E-----TQLAIYDASKMER-----IRQWTPQDALSAPISCAVYSCNSQLVFATFC--------DGNIGVFD 1035 (1128)
Q Consensus 977 ~l~~~~---d-----~~i~v~d~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~--------dg~i~vwd 1035 (1128)
.++.|. + ..+.+||+.+... ...+.........-.+++...++++++.|+. ...|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 666653 2 3588999987761 1111100000111123333444787777774 34699999
Q ss_pred cCCCceE
Q 001190 1036 ADTLRLR 1042 (1128)
Q Consensus 1036 ~~~~~~~ 1042 (1128)
+.+++-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9988765
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.04 E-value=16 Score=37.73 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=96.3
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
.|..++...+-..++ .||.|..|-....-.+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 466666543333333 378888886543211111001123577777653 3444445 9999999765432221111
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
.....|..++...+...+ -. ||.|..|-.....++.. +.. ....+..++.-.+...+ . .++.++.|=..
T Consensus 138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~a-l-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLA-L-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEE-E-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEE-E-ECCeEEEEECC
Confidence 233567777665443222 33 79999998765433321 110 01345666655544443 4 79999999766
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
....+..-... ...|..++-..+ +.+.-. ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 54433221111 345666665433 333333 99999997654
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=0.2 Score=45.56 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=38.5
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccc
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRE 126 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1128)
+++|.|+-|.||||+..+ .++|..|+.+.-.-+.....+.+++|..+....+..+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~ 88 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKE 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhh
Confidence 399999999999999999 9999999976544332333455555555544443333
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=2.6 Score=45.44 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred cEEEEECCCC--cccceeEEeecCCCCCCCccEEEEc---CC----CCEEEEEe--cCeEEEEecCCcccccccc----c
Q 001190 938 QLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFN---AD----QVRMLVVH--ETQLAIYDASKMERIRQWT----P 1002 (1128)
Q Consensus 938 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s---~d----~~~l~~~~--d~~i~v~d~~~~~~~~~~~----~ 1002 (1128)
.|.+||+.++ +.++...+........+....+++. |+ +.++.+++ ...|.|||+.+++.-+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777777 6666555542222223556777777 22 44555554 6789999999987755442 1
Q ss_pred CC-------C----CCCCeEEEEEeeC----CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC-ccceEE
Q 001190 1003 QD-------A----LSAPISCAVYSCN----SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ-TVYPLV 1066 (1128)
Q Consensus 1003 ~~-------~----h~~~v~~l~~s~d----g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1066 (1128)
.. + -...+..+++||+ ++.|+-....+ -++|.+.+.-+... ........+|... ..-...
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~---~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQK---GGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSST---TCCCCCEEEEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCc---chhhceEEeeecCCCCCcce
Confidence 10 0 0247889999998 77777665444 24444433111000 0000011111111 122245
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++.+.++.++++--..+.|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 666654688888888889999998865
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=28 Score=37.38 Aligned_cols=155 Identities=9% Similarity=0.138 Sum_probs=87.9
Q ss_pred eEEEEECCCc--eEEEEeeCC------CCCeeEEEEc---CC--C-CCE-EEEEeCCCcEEEEecccceeeecccccccC
Q 001190 853 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ--D-NNI-IAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 853 ~i~vwd~~~~--~~~~~~~~~------~~~v~~l~~s---~~--d-~~~-lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
+|.+||+.+. +.++++.-. ...+..+++. +. . +.+ .++-...+.|.|+|+.+++.-+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 4667888887 777766532 2346777877 21 1 223 333345678999999998876655 211
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC----CCEEEEEecCeEEEEecCC
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~i~v~d~~~ 993 (1128)
|.|+.....+. +|.-.-| . ..+..++.+|+ +++|....-..-++|.+.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~-------------~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEF-------------K-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEE-------------C-------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceEE--CCEEeEe-------------c-------cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 34542111111 2322212 1 45778899998 7888776544455555542
Q ss_pred c-----c---cccccccCCCCCCCeEEEEEe-eCCCEEEEEecCCcEEEEecCC
Q 001190 994 M-----E---RIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 994 ~-----~---~~~~~~~~~~h~~~v~~l~~s-~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
. . .+..+-. .+-...-..+++. .+|.++++--..+.|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1 1 1111111 1001334456665 5677777777889999999875
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.36 E-value=32 Score=37.44 Aligned_cols=262 Identities=11% Similarity=-0.013 Sum_probs=120.0
Q ss_pred CCCeeEEEecc--CCCeEEEEeCC----eEEEEECCCceEEEEeeC--------------CCCCeeEEEEcCCC-CCEEE
Q 001190 831 EEAVPCIALSK--NDSYVMSATGG----KISLFNMMTFKVMTTFMS--------------PPPASTFLAFHPQD-NNIIA 889 (1128)
Q Consensus 831 ~~~v~~~~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~~--------------~~~~v~~l~~s~~d-~~~la 889 (1128)
...|.++++.| ++.+++.+..| .|... .+.++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666666554 34333 222322222111 11247789998743 44555
Q ss_pred EEeCCCcEEEEecc--cceeeecccc----------------cccCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCCccc
Q 001190 890 IGTEDSTIHIYNVR--VDEVKSKLKG----------------HQKRITGLAFSTS-LNILVSSGADAQLCVWSIDTWEKR 950 (1128)
Q Consensus 890 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~~~Dg~i~iwd~~~~~~~ 950 (1128)
.+...+.|...+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.|+.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 55556655544311 1122221111 1235788999873 33344343344333322 222211
Q ss_pred ceeEEeecCCC-------CCCCccEEEEcCC-CCEEEEEecCeEEEEecCCcccccccccCCCC--CCCeEEEEEee-CC
Q 001190 951 KSVTIHIPAGK-------TPTGDTRVQFNAD-QVRMLVVHETQLAIYDASKMERIRQWTPQDAL--SAPISCAVYSC-NS 1019 (1128)
Q Consensus 951 ~~~~~~~~~~~-------~~~~v~~v~~s~d-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h--~~~v~~l~~s~-dg 1019 (1128)
........... ....+..++++|+ ...+.++..+.|...+- .++....+...... ...+.+++++| +.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 11100000000 0123678899886 35666666666555442 23222222110000 13456788876 33
Q ss_pred CEEEEEec-----------CCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEE
Q 001190 1020 QLVFATFC-----------DGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1020 ~~l~t~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
..|+++.. ++...||.... |+....+.. .++... .-.......++++|.++..|..++.++.|
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~--~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQ--AWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSS--CCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcc--ccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 34444432 33345665544 444444331 111100 00001123577888666667777666654
Q ss_pred EEcCCCCCCCcccC
Q 001190 1088 VMEPSESEGKWGVS 1101 (1128)
Q Consensus 1088 iWd~~~~~~~w~~~ 1101 (1128)
|.-.++...|...
T Consensus 366 -~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 -WASADEGEHWQCI 378 (394)
T ss_dssp -EEESSTTSBCEEE
T ss_pred -EEECCCCCCceEc
Confidence 4445555568764
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=85.61 E-value=34 Score=40.58 Aligned_cols=241 Identities=7% Similarity=0.005 Sum_probs=116.4
Q ss_pred EEE-EccCCCEEEEE-eCC----CeEEEEEccCCCcceeceeec-cccc------ceeEEEEecCCCeEEEEEec-----
Q 001190 411 RVA-WSPDGNYVGVA-FTK----HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTCG----- 472 (1128)
Q Consensus 411 ~l~-~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~-~h~~------~v~~l~fs~d~~~~~l~s~s----- 472 (1128)
.+. ++||+++++.+ +.. ..++++|+.+++.+.-. +. .-+. ....++|..++. ++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 88999988865 222 35999999998765421 22 0000 124458874444 444321
Q ss_pred -----CCCeEEEEe-cCC--CeEEEecCCCCCe-EEEeccCCCCcc---EEEEEecc---CcEEEEecCCCCce-eeecC
Q 001190 473 -----DDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMGSR-VDYDA 536 (1128)
Q Consensus 473 -----~d~~i~vWd-~~g--~~~~~~~~h~~~v-~~~~~~~~~~~~---~l~s~~~d---g~i~~wd~~~~~~~-~~~~~ 536 (1128)
....|+.|. -+. +-...+.+....+ .+...+.++... .+++.+.+ ..+.+.+.+..... ..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 124677887 221 1223344433333 223333333222 34443322 34445554432222 33333
Q ss_pred CCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCCCCc-------eeeE-eccccCCceeEEEEeCCCCEEEE
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKRT-YAGFRKKSNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 602 (1128)
..... +..+.++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 33211 2334556555533211 0136678888887642 1222 43334435666777764 55666
Q ss_pred EECCC--cEEEEECCCCe-eeEE-EecCCCCCCcceEEEcCCCCEE-EEEEc---CCcEEEEEcc
Q 001190 603 VGEDS--QIKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGNLL-AVTTA---DNGFKILANA 659 (1128)
Q Consensus 603 ~s~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~~~~l-~~~~~---dg~i~iw~~~ 659 (1128)
...++ .|+++++.++. .... +.... ...+.....++++..+ ++.+. -+.+..+++.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66665 46777776665 2233 33322 1235555566665443 33332 2456556554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1128 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.003 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 7e-17
Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 82/405 (20%)
Query: 275 VPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLP 334
VP NQ + P P + D + + L+ + + Y+ + LP
Sbjct: 4 VPYNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPA---------LP 48
Query: 335 RTVAVSLHQ----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
R + V LH+ S V + F + L N ++ ++ LV++
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA 105
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
S + + V +SPDG ++ LI+++ + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 451 VGAVNDLA-------------------------------------FAYPNKLLCVVTCGD 473
+ +++ P +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 474 DKLIKVWELSGRKLFN--------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
D+ ++VW+ L GH+ VYS+ Q + S ++D +K W
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 283
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--------DSFLVEWNESEGTIK 577
++ D P + Y + S T+++ D ++ W++ G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 578 RTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNV 617
G R V N F D + + W +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 9e-11
Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPAS------------TF 877
+++V + +++ V+S + + L+N+ + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL------NILV 931
+A ++ I G++D + ++ + L+GH+ + +A + N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 932 SSGADAQLCVWSI 944
+ D + +W
Sbjct: 373 TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 1e-08
Identities = 46/403 (11%), Positives = 120/403 (29%), Gaps = 35/403 (8%)
Query: 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
P N + S P+ P + +D D + + + + + V
Sbjct: 4 VPYNQRANHSKPIPPFLL---------DLDSQSVPDALKKQTNDYYILYNPALPREIDVE 54
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+ +S D +S V + ++N LA G N ++++ + +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVAR-------LSDDSAAN 106
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
N + + + + + S + ++ + ++ + + + +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
+ + + + G+ D T+ I+++R + L T + + D
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226
Query: 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGD-TRVQFNADQVRMLVV-HETQLAIYDASKM 994
+ VW +T + + +G V F D ++ + + +++
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286
Query: 995 ERIRQWTPQDAL---------SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045
++ + + N + + + D + +D + +
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346
Query: 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088
SV + P E N FA G D ++
Sbjct: 347 QGHRNSVISV------AVANGSSLGP-EYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 33/260 (12%), Positives = 68/260 (26%), Gaps = 9/260 (3%)
Query: 872 PPASTFL-AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQKRITGLAFSTS 926
P FL Q + +YN + K H + + FS
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73
Query: 927 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 986
L + G + V+ + ++ A K P + + + V +
Sbjct: 74 GEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132
Query: 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046
+ A+ E + F G+ V + +R +
Sbjct: 133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 192
Query: 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDN 1106
+ S ++ V P + A G D +V+V + + ++
Sbjct: 193 RTGQCSLTLSIEDGVTTVAV---SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 1107 GILNSRTTSSSTSNHTPDQL 1126
G + + S +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSV 269
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 2e-16
Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 40/342 (11%)
Query: 301 DHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSL-----HQGSTVISMDFHPS 355
+ EQL ++R A + ++ T ++D + R + H + +M +
Sbjct: 10 EAEQLKNQIRDA--RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGTD 66
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
+ LL+ S +G++ +W+ +++ + P + + C+ + + ++
Sbjct: 67 SR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV------- 468
V ++ L Y +QI G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 469 --------------VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
V+ D K+W++ G F GHE+ + +IC N +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFAT 243
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571
+ D + + + Y C T++ +S G L + D W+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDA 299
Query: 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ AG + + + DS +K W+
Sbjct: 300 LKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.7 bits (187), Expect = 2e-15
Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGG---KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
E + I N + + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
+ G +D ++++ + L GH R++ L + + + D+ L +W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.1 bits (157), Expect = 1e-11
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 8/157 (5%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939
D + G D++ +++VR + GH+ I + F + N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIR 998
++ + ++ + + G T V F+ +L ++ ++DA K +R
Sbjct: 251 RLFDLRADQELMTYSHDNI----ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035
+SC + + V D + +++
Sbjct: 307 VLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939
D + I + +R + L+GH +I + + T +LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 940 CVWSIDTWEKRKSVTIH 956
+W T K ++ +
Sbjct: 80 IIWDSYTTNKVHAIPLR 96
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.9 bits (190), Expect = 7e-16
Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 54/314 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS------------------- 382
H+ V + FHP +++ S + I +W+ D +
Sbjct: 16 HRSP-VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 383 ----KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438
+ +VS V+ P+G+++ A I+++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 130
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPV 497
H V + L+ +C +D+ ++VW ++ ++ H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 498 YSICPHHKENI------------------QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
I + + F+ S + D IK W T + +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
W +L+ + G + SC D L W+ +T + F T +
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 600 FLAVGEDSQIKFWD 613
+ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 3e-13
Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 2/133 (1%)
Query: 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFM 869
+H + + + ++ K +++S + I ++++ T + T +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929
+ FH I +D T+ +++ + L H+ +T L F +
Sbjct: 245 GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 930 LVSSGADAQLCVW 942
+V+ D + VW
Sbjct: 304 VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 7e-11
Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 68/274 (24%)
Query: 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
+ + H V + F ++ V+ +D IKVW+ +G +GH V I
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 501 CPHHKE----------------------------------------NIQFIFSTAIDGKI 520
H N I S + D I
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
K W T + W + + DG+ + SC D + W + K
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAEL 181
Query: 581 AGFRKKSNGV-------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621
R + + L+ D IK WD+ L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F G + D ++
Sbjct: 242 TLVGHDNWVR--GVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 5e-10
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ---------- 883
+ +++ + + S + + ++ + T + +++ P+
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 884 ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
+ G+ D TI +++V L GH + G+ F + ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 935 ADAQLCVWSIDTWEKRKSVTIH 956
D L VW K++ H
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAH 288
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 7e-08
Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 27/271 (9%)
Query: 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
++V I+ + + S + M + + + I
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
+ D TI ++ V+ GH++ + + + ++ S D + VW + T E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 951 KSVTIHIPAGKT----PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQD-- 1004
+ H + P A + + S+ + I+ W
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 1005 ------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058
+ ++ + + + D + V+D R LN
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK-----------TLNA 287
Query: 1059 -SQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088
V + H G D +VKV
Sbjct: 288 HEHFVT--SLDFHKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 1e-06
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
K L GH+ +T + F +++VS+ DA + VW +T + +++ H
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
K W + + GH +PV + H + + S + D IK W Y+T
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
+ + G L SC + + E T+
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+H ++ D IK W++ + + + R +++G L+A + D ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 24/231 (10%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
T + FHP +++ +ED+TI +++ + + LKGH + ++F S +L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 936 DAQLCVWSIDTWEKRKSV----TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991
D + +W +E +++ P GD V + D+ + +T
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------ 133
Query: 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
+ + + L+ + D + V+ T + + ++
Sbjct: 134 ------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1052 SPSVLNGSQTVYPLV-------VAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095
+ ++ Y + G D ++K+ + S
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.0 bits (172), Expect = 2e-13
Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKRITGLAFSTSLNILVSS 933
+ A++ D IAI + +HIY ++ +LK H ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 934 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993
G D VW++ + ++ I V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 994 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050
+ + + + NS L+ A CD +F A + AP+ +
Sbjct: 130 WWVCKHIKKPI--RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.6 bits (150), Expect = 1e-10
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 23/262 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+S AW+ D + + H + +Y +G N Q ++ H G V + +A + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 468 VVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW L GR + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGS---------------RLFSCGTSKDGDSFLVEWNE 571
+ + S D R+FS + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629
S+ V V F + V DS + D D + + +E
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 630 PNLPRLRFSKEGNLLAVTTADN 651
F E +L+A
Sbjct: 246 LLAV--TFITESSLVAAGHDCF 265
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 4e-08
Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 30/282 (10%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+ ++ T + + +N E+ ++E + + K +
Sbjct: 10 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--------------- 53
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
V+ V W+PD N + T +++ G + + A K
Sbjct: 54 --VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ + + + + N + + + D K + +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT----SKDGDSFLVEWNESEGTI------ 576
SCG + V W + T+
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
+ + T++ +A G D + D+
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 28/363 (7%), Positives = 82/363 (22%), Gaps = 16/363 (4%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++ + + ++ ++ + + + + + ++ + N + T
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGT 71
Query: 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710
+ + G + + + + S + C E+ +
Sbjct: 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 131
Query: 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770
I ++ + I + + P T SK+
Sbjct: 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191
Query: 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830
+ +GV R A + + L
Sbjct: 192 ELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL------ 244
Query: 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+ + S V + LF + +F +
Sbjct: 245 --PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERF 301
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS----TSLNILVSSGADAQLCVWSIDT 946
D H+ ++ ++ + ++G D + +W + +
Sbjct: 302 QNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Query: 947 WEK 949
E
Sbjct: 361 LES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 41/337 (12%), Positives = 79/337 (23%), Gaps = 58/337 (17%)
Query: 328 WSLDDLPRTVAVSL--HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
+ L H G V +D+ P ++ ++ +W L R +
Sbjct: 34 YEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI 91
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVA--WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ 443
+ AA + + + K S SRV + + S S D
Sbjct: 92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
+S + A + + V G +F V+ +C
Sbjct: 152 NSVLLAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ S D + D + + + + + S + + D
Sbjct: 211 ANGSRVAWVSH--DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-----D 263
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF------------------------------ 593
F V + K ++ G Q
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
Query: 594 --------------DTTQNHFLAVGEDSQIKFWDMDN 616
+ F G D + WD+ +
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 8e-13
Identities = 57/346 (16%), Positives = 110/346 (31%), Gaps = 33/346 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W +L + H + + F ++ GS + + +W L +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCL--RTLVG 55
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
S + +I + W+ + H +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 448 DAHVGAVNDLAFAYPNKLL--------------CVVTCGDDKLIKVWELSGRK-LFNFEG 492
DA + + + L+ VV+ D ++KVW+ L +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
H VYS+ + S ++D I+ W +T + GH T +
Sbjct: 176 HTNRVYSLQFDGI----HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMELKDNI 229
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
L S + DS + W+ G +T G K + V +N + +D +K W
Sbjct: 230 LVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 613 DMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
D+ + L + ++ G + R+R S + AV + + +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ D+ ++S + ++++ T + + T P + + + N + ++
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 894 DSTIHIYNVRVDEVKSKLK-----GHQKRITGLAFSTSLNILVSSGAD----AQLCVWSI 944
D T+ +++++ E L G + + S + + + +L V
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Query: 945 D 945
D
Sbjct: 339 D 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 42/236 (17%)
Query: 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938
N I G++D+T+ +++ + L GH + ++ I S+ +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 939 LCVWSIDTWEKRKS----------------------VTIHIPAGKTPTGDTRVQFNADQV 976
+ T+ + +T + + V
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 977 RMLVVHETQLAIYDASKMERIRQWTPQDALSA----PISCAVYSCNSQLVFATFCDGNIG 1032
R + ++ M ++ + L + V + D +I
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 1033 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088
V+D +T + T + + + L+ N G D +VK+
Sbjct: 201 VWDVETGNCIH---------------TLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
DG +V I+++ N + + + + +L V+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNIL--VSGNA 235
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGS 530
D +K+W++ + S + N F+ +++ DG +K W T + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
Query: 531 RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
V ++ G + S + ++ L+ +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 36/335 (10%), Positives = 86/335 (25%), Gaps = 38/335 (11%)
Query: 339 VSLHQG--STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396
V + Q + + PS LLL+ S +G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSL----------------TVYKFDIQAKN 46
Query: 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND 456
+ + + + T L + Q + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--FEGHEAPVYSICPHHKENIQFIFST 514
+ +KL+ G ++I + + V + N +
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTM----LYSADGSRLFSCGTSK-----DGDSF 565
+ +++ + + L + D
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
++N S+ R + K +N ++F G D I W++ +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ ++ + N+L + T+D+ FK
Sbjct: 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 20/224 (8%), Positives = 50/224 (22%), Gaps = 13/224 (5%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG 934
+ P +++ I + D ++ +Y + L ++ + F + ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 935 ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994
+ + A + + + +
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
Query: 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1054
+ + NS + + + F
Sbjct: 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE------- 188
Query: 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1098
VA P E +A DG V V + +
Sbjct: 189 --ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
+ + I+ + S ++L+ + D L V+ D K + +
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC---CN 63
Query: 971 FNADQVRMLV 980
F + +
Sbjct: 64 FIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV------------- 902
L +A P++ A + D + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 903 --RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
R + K + + FS L ++G+D + W++ T +K K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 43/295 (14%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELA-------------------MRDRLVSKPF 385
V + + ++ G + I +W+ +R++
Sbjct: 16 KGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+ + + + + + + + I ++ A D+
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHH 504
+ H AVN + F +V+ D+ IKVW + + GH+ + +
Sbjct: 133 VLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + S + D I+ W D GH D R+ S D
Sbjct: 189 ----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG----AYDG 238
Query: 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ W+ R AG + S V + + ++ D I WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 9e-07
Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 41/222 (18%)
Query: 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEA 495
G + L++ V L + ++ + V+ D IK+W+ + GH
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTG 56
Query: 496 PVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
V + + I ++ V + +
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 551 SRLFSCG----------------------------TSKDGDSFLVEWNESEGTIKRTYAG 582
++ S GD + WN S RT G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624
G+ ++ D+ I+ WD++ L +
Sbjct: 177 H---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 26/205 (12%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D+ I G D+TI I++ E K L GH + L + + I
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII---------TGSSD 74
Query: 944 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQ 1003
+ + + + + + +A++D + I
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 1004 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063
A ++ + + + D I V++ T + +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVR---------------TLNGH 177
Query: 1064 PLVVAAHPLEPNQFAIGLTDGSVKV 1088
+A G +D ++++
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911
I ++N T + + T L + ++ G+ D+TI ++++ L
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL 214
Query: 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971
+GH++ + +VS D ++ VW + ++ + +T +
Sbjct: 215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-RTLVEHS---- 267
Query: 972 NADQVRMLVVHETQLAIYDASKMERIRQW 1000
+V L E Q+ +S + I W
Sbjct: 268 --GRVFRLQFDEFQIVS--SSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 320 YSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
S+S +T + + V G + L++ GSS+ I LW++
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC 210
Query: 380 LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439
L + + R+ + V + + AG+
Sbjct: 211 LRVLEGHEELVRCIRFDNK------------RIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481
LR + H G V L F ++ V+ D I +W+
Sbjct: 259 CLRT---LVEHSGRVFRLQFD-EFQI---VSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 4e-09
Identities = 7/111 (6%), Positives = 24/111 (21%), Gaps = 2/111 (1%)
Query: 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ + ++ + L F +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGK 285
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
D+ ++ + + + S +V+ D + V+ +
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 30/325 (9%), Positives = 86/325 (26%), Gaps = 32/325 (9%)
Query: 333 LPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
+PR +L+ G V ++ + + G + +W+++
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPG------------ 83
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
P + + PDG + V + ++ A + +
Sbjct: 84 --NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQF 510
+ G+ + + + + + C +
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+++ +D +++W +D ++ Y G L S + + V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630
+ ++F F++ G+D+ + W + + +
Sbjct: 257 DKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 631 NLPRLRFSKEGNLLAVTTADNGFKI 655
+ S + + + D +
Sbjct: 311 S---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + D + + + P G ++ V +++ + Q+
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKPDKYQL 261
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
H V L FAY K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD- 318
Query: 508 IQFIFSTAIDGKIKAW 523
++I + + D K +
Sbjct: 319 -KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+ ++ G + +L+ + + Q +V + +K + VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 472 GDDKLIKVWEL 482
DK V+E+
Sbjct: 325 SGDKKATVYEV 335
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 8e-09
Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 27/314 (8%)
Query: 313 PSAEEVTYSSSRHQT-WSLDD----LPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSN 366
P+ + Y + LDD +P V + H S V ++ F P + L G +
Sbjct: 27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86
Query: 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426
G++ +W + S F+ + +S ++W +G + V
Sbjct: 87 GKVIVWGWTF-----------DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV--WELSG 484
+ + V +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 485 RKLFNFEGHEAPVYSICPHHKEN--IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542
+ V + + + S + + D P
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ--FDTTQNHF 600
L D + + G D+ + W+ + + + +++ T
Sbjct: 256 FALSWLDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 601 LAVGEDSQIKFWDM 614
+++ D + F+++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 6e-08
Identities = 36/318 (11%), Positives = 87/318 (27%), Gaps = 27/318 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ + + P+ + + + + D +P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFV----------------RCLDDGDSKVPPVVQFTGH 61
Query: 405 VPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSNDLRQ-----HSQIDAHVGAVNDL 457
V+ V +SP Y+ + ++ + + S+ G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517
++ + + LCVV G D + + C + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 518 GKIK---AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634
+ + + + F VG D+ I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 635 LRFSKEGNLLAVTTADNG 652
+ GN ++ + +G
Sbjct: 301 VGVVATGNGRIISLSLDG 318
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 5e-05
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916
F P A D+ A D+TI +++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 917 RITGLAFSTSL---NILVSSGADAQLCVWSI 944
++ ++S D L + +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 7/160 (4%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKR-ITGLAFSTSLN--I 929
+T L++ P N I + + + + +V + GH +T + FS
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD--TRVQFNADQVRMLVVHETQLA 987
L S ++ VW ++ SV +++ + + + ++ + R+ VV E +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027
+ S I+ + + T
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 20/304 (6%)
Query: 313 PSAEEVTYSSSRH-QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITL 371
P+ +++ Y + T + L T + H PS G +G + +
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-TTVAKTSPSGY-YCASGDVHGNVRI 84
Query: 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431
W+ ++ ++ + + + + + G L
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFD 134
Query: 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491
+ G+ + + + V F
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
P S+ + + +DG D V + T DG+
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGT 251
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
++ S D + WN + +++T + + + T+ +++ + I F
Sbjct: 252 KIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 612 WDMD 615
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 41/332 (12%), Positives = 91/332 (27%), Gaps = 31/332 (9%)
Query: 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
QT LPRT T + + P+ + + + +
Sbjct: 5 QTALFPSLPRT------ARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLT------- 49
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
I+ + + SP G Y ++++ + +
Sbjct: 50 ------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKT 96
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505
I G V D+++ +K + V G ++ V+ +A +
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
I S + D + + + + + ++ Y+ DGS S G +
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTST 623
G + S V + + + D IK W++ + + +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + +L L +A+
Sbjct: 277 PVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK- 916
F+ + S F D IA + D TI I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 917 RITGLAFSTSLNILVSSGADAQLCVWSID 945
L + LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
+ L P + I ++++ V H + T S S S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 935 ADAQLCVWSIDTW 947
+ +W
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915
+S PA + +++A G+ D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 916 KRITGLAFSTSLNILVSSGADAQLCVWSI 944
+ L + T + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
DEV + GH K IT L + L+S D ++ WS + +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506
I H + L +++ D I W S + H + S+ +
Sbjct: 9 ISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ 58
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541
I ++ A
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
++ + + P + + V I +YS + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK- 252
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
++AH VN+L + P+ L V+ G D IK W
Sbjct: 253 -ALNAHKDGVNNLLWETPSTL---VSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.002
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 28/287 (9%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL---------AMRDRLVSKPFKIWDMAA 392
H + ++ +P L+ GS +G I W + SK + ++
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG 452
I K S +VA + + + V + + + ++
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512
N + + G+ + A I E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 513 STAIDGKIKA-----WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ R W + + + D+ +
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 568 EWN-ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
++ + I + + N ++ + ++ G D+ IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 5e-08
Identities = 38/373 (10%), Positives = 92/373 (24%), Gaps = 41/373 (10%)
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656
+++ LA ++ D + + + P + G + T +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE---- 56
Query: 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716
SL ++ E L + +V+ SP
Sbjct: 57 -------SLVKIDLVTGETLGRI---------------DLSTPEERVKSLFGAALSPDGK 94
Query: 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776
+ + T +V AE + + + ++ LY
Sbjct: 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154
Query: 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836
+ G K ++ + + L + N +
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAE-----------TYAQPDVLAVWNQHESSGVMATPFY 203
Query: 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896
A D +A + ++ T ++ + F +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNV 261
Query: 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
+ +++ + ++ + ST + + GA L + +T EK+ V +
Sbjct: 262 LESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
Query: 957 IPAGKTPTGDTRV 969
R+
Sbjct: 321 GN-ASMSLASVRL 332
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 34/345 (9%), Positives = 84/345 (24%), Gaps = 45/345 (13%)
Query: 316 EEVTYSSSRHQTWSLDDLP-----RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEIT 370
+ + +R + D + + ++ G T + P + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 371 LWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430
+L + L + S+ A SPDG +A + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVK--------------SLFGAALSPDGKT--LAIYESPV 103
Query: 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490
+L + + DA + AF P ++ + D + +
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Query: 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
G + P + D +++ G
Sbjct: 163 AGT---LVEDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPT-- 215
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
+ L+ + G + R A G + ++
Sbjct: 216 ----------AYRTGLLTMDLETGEMAMR--EVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+D++ + + S +G+ + + A
Sbjct: 264 SFDLEKNASIKRVPL-PHSYY--SVNVSTDGSTVWLGGALGDLAA 305
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 9e-08
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQ 915
F + + +NI+ G ++ +IYN+R + V + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 916 KRITGLAFSTSLNILVSSGADAQLCVWSID 945
+I + F ++ + D Q + +D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
Q + + H+ +V + + + +T DDK+I+V++ + + L GH+ V+++
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
H + S + D ++ W ++ + + + S+D
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GDSFLVEWNESEGTIKRTY 580
+ W + + +
Sbjct: 118 NTLHV--WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSI 500
+ H ++ + Y + + + G + ++ L KL N ++S+
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
K + + DG+ + D
Sbjct: 331 NFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
++N + G +D I +Y+ + +L GH + L ++ ILVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 944 IDTW 947
I
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967
++ L+GH + N +++ D + V+ + ++ H G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVW 57
Query: 968 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027
+++ ++ + K + V N + +
Sbjct: 58 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1028 DGNIGVFDADT 1038
D + V+
Sbjct: 117 DNTLHVWKLPK 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.003
Identities = 35/328 (10%), Positives = 90/328 (27%), Gaps = 16/328 (4%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
+ + + +S H G V ++ + +L+ GS++ + +W++
Sbjct: 38 YDSINKKFLLQLSGHDGG-VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + +I V S Y +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
G + + + + V D+ LI + L+ GH +Y +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHE 212
Query: 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ S ++D I+ W + + S +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVSAAADGS 264
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
R ++ + + F + ++ L G ++Q +++ + ++ +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LK 322
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F L+A D +
Sbjct: 323 DADQIWSVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.8 bits (122), Expect = 3e-07
Identities = 27/358 (7%), Positives = 74/358 (20%), Gaps = 22/358 (6%)
Query: 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660
+A Q D+ +L + + +R + + + G +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKVPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720
E + K + + V +
Sbjct: 74 RTGKAEKFEENLGN-VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132
Query: 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG-L 779
+ S + K + + T+ A
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192
Query: 780 LALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
L S + + + +P + +
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE--------- 243
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
+ + ++++ S + E +
Sbjct: 244 -AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
Y+V+ K+ + +T L S ++ D ++ + ++ E ++V
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.6 bits (93), Expect = 9e-04
Identities = 21/252 (8%), Positives = 60/252 (23%), Gaps = 6/252 (2%)
Query: 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850
N + + + + + IA + +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155
Query: 851 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910
++ + + + D+ + + S + V +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
+ I + S + LV ++ D + K + ++
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSE--AGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273
Query: 971 FNADQVRMLVVHETQLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF 1026
+ + V E A + + ++ + + ++ S + + V
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 1027 CDGNIGVFDADT 1038
DG I F +
Sbjct: 334 DDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 23/305 (7%), Positives = 63/305 (20%), Gaps = 65/305 (21%)
Query: 408 SVSRVAWSPDGNYVGVA--------------------FTKHLIQLYSYAGSNDLRQHSQI 447
+ V D + F ++L +++ + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103
Query: 448 DAHV--------------------GAVNDLAFAYPNKLLC--------VVTCGDDKLIKV 479
+ + D + ++ + + I V
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDY 534
+++ GRK+F + Y+ + ++ + + + +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 535 DAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592
P + + + R
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 593 FDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
+ E + +D+ + + NL LR S + + V D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDD 335
Query: 651 NGFKI 655
Sbjct: 336 GKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.004
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI---- 401
V++ F + ++ + + + + DM S P
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 402 ----FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457
+ + S Y A K ++ Y ++ + DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRK 486
+ K + + DD I + L +
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.9 bits (120), Expect = 4e-07
Identities = 38/381 (9%), Positives = 85/381 (22%), Gaps = 41/381 (10%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTA 649
+ + + + D+ + + S P + + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 650 DNG-FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
G + + A + + + S A+ ++ P +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY-- 117
Query: 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768
+V + + R V + ++
Sbjct: 118 -----------------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----RAADDG 156
Query: 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828
L + + + + +A V W S
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLR---NWNRKGYSAPDVLYFWPHQSP-------RHE 206
Query: 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888
+ ++ T K T + F +
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266
Query: 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948
+ + Y+++ ++ +AF + L G L V++ DT E
Sbjct: 267 IY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324
Query: 949 KRKSVTIHIPAGKTPTGDTRV 969
K K I +P G T +V
Sbjct: 325 KVK--NIKLPGGDMSTTTPQV 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 56/337 (16%)
Query: 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411
H+ ++V + + + ++A V K +
Sbjct: 4 LKAGHE-YMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGT 44
Query: 412 VAWSPDGNYVGVA----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+PD V + I L + + S ++ A + K +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKI------ 520
+L + + +L F + + ++ A DG +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 521 -KAWLYDT--------MGSRVDYDAPGHWCTTMLYSADGSRLFSC-------------GT 558
T + + FS
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
+ D + + G + + G +++ +D+
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQRK 283
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ + + + F K+G+ L + N +
Sbjct: 284 LIKAANL-DHTYY--CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 14/158 (8%), Positives = 36/158 (22%), Gaps = 11/158 (6%)
Query: 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979
G A ++ + L V + + K + +P P D
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGT---AMMAPDNRTAY 55
Query: 980 VVHET--QLAIYDASKMERIRQW----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033
V++ + D + P + + S A+ ++ +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 1034 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071
+ + L + + +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/237 (8%), Positives = 56/237 (23%), Gaps = 25/237 (10%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
G ++ S P + + + ++ + +++ A
Sbjct: 86 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRT 140
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-------------- 447
F +P V + + DG+ + + + + + L +
Sbjct: 141 F-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 448 ---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
H ++ + + T +L K E +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
++ + + H + + G +L+ GT D
Sbjct: 260 SPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.0 bits (113), Expect = 4e-06
Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377
+ + +G TV + +HP + ++ S + + ++
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK 182
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+ K+ + + ++ W Y A +
Sbjct: 183 E-----TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLC---------VVTCGDDKLIKVWELSGRKLF 488
L + F +P ++ + + +K+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 489 NFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWL--YDT-----------MGSRVDY 534
+G I H K ++ + D +I + +D + D
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357
Query: 535 DAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
Y+ G + FS K+ S LV ++ +K R
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 24/246 (9%), Positives = 55/246 (22%), Gaps = 24/246 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSNGEITLWELAMRDRLVSKPFK 386
W + ++ + V + L V G+I L + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-- 59
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS- 445
+V S G Y+ V I + +
Sbjct: 60 ------------------TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
+ Y ++ + + + V + H
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + I ++ + + +T G + + T+ L G
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 565 FLVEWN 570
F+ N
Sbjct: 221 FMTAAN 226
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.1 bits (113), Expect = 4e-06
Identities = 29/359 (8%), Positives = 75/359 (20%), Gaps = 35/359 (9%)
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNP 300
AAA+ A A G + + + + +T + + V T G
Sbjct: 9 AAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLGAFL 67
Query: 301 DHEQL---MKRLRPAPSAEEVTYSSSRHQT---WSLDDLPRTVAVSLHQGSTVI------ 348
A ++ + R + + L
Sbjct: 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
+ S LL + + ++ A+C + +
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSASCFHIHPGA-------A 175
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
+ S + Q+ A + +
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQ 235
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAP--VYSICPHHKENIQFIFS-----TAIDGKIK 521
+ G + + + + I + + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295
Query: 522 AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579
G + GH ++ + DG+ ++ L ++ + + +
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV--LDIYDAASDQDQSS 352
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 8e-06
Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 8/228 (3%)
Query: 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384
+L TV + S+D L+ G +NG + + EL+ L +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 222
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
+ + + + + G ++ +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPH 503
AH V L+F + + + G D ++ W++ + ++ H +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
+ +L S + D C D S
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 45/385 (11%), Positives = 103/385 (26%), Gaps = 31/385 (8%)
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646
+ + ++ D +K WD ++ D + L A+
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAI 72
Query: 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706
++A L E + L + S A +
Sbjct: 73 ERDAFELCLVATTSFSGDLL-FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766
+ ++ + + + S L ES T S+
Sbjct: 132 DRLLSHRLVAT------DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 767 VVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQH----WLPSSGLLM 821
+ S GL+A G NG ++ + + ++ S + + S
Sbjct: 186 FATSV-DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881
+A + + ++ + S + S + ++++ L+F+
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFN 298
Query: 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI----TGLAFSTSLNILVSSGADA 937
+ D + ++V+ E + L H I LA + L G
Sbjct: 299 DS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--- 354
Query: 938 QLCVWSIDTWEKRKSVTIHIPAGKT 962
V+ + +K + ++
Sbjct: 355 ---VFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 21/173 (12%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN------------FE 491
+ AH + ++ + V+C D +KVW+ N
Sbjct: 7 ANAGKAHDADIFSVSAC-NSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
H V + + +T+ G + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFY--RITREDETKKVIFEKLDLLDSDMKKH 120
Query: 552 RLFSCGTSKDGDSFLVEW---NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601
++ D L + +GT + + + + L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 36/349 (10%), Positives = 90/349 (25%), Gaps = 55/349 (15%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H + S+ S + S +G + +W+ + D K S S
Sbjct: 13 HDAD-IFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSY------SHFVHKSG 62
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAV 454
V + + + + V + Y ++ + D +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 455 NDLAFAYPNKLLC---VVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHHKENI- 508
L + N L +V +W+ + + + +P + + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 509 -------------QFIFSTAIDGKIK---------------AWLYDTMGSRVDYDAPGHW 540
I + +G ++ + +
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQN 598
+ + + D + + + + G S+ V+ +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLA 645
+ G D +++FWD+ +T+ + L + G+ LA
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.5 bits (108), Expect = 9e-06
Identities = 23/159 (14%), Positives = 41/159 (25%), Gaps = 15/159 (9%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965
+ GH K IT L+ S L S+ A+ + W I T +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--------- 53
Query: 966 DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 1025
+A + + + + + + A + L A
Sbjct: 54 ------HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 1026 FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1064
DG+I V T + S + +
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 146
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 24/291 (8%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL---------------VSKPFK 386
H + + ++ + L + G I W+++ +
Sbjct: 11 HNKA-ITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
++ ++ S VA +G+A + + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 447 IDAHV---GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
V + +A + + + V + + H A + S+
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ + + + + + + + + + G S D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNS 247
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWD 613
+ WN ++ + + V + ++ G+DS IKFW+
Sbjct: 248 VIV--WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-- 911
T + A DN +A G+ D+++ ++N+ +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
H + +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 34/315 (10%), Positives = 83/315 (26%), Gaps = 39/315 (12%)
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
QT+ + + +I +W L L + DVP V + SP
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGAL-----------------TLTQVVDVPGQVQPMVVSP 46
Query: 417 DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--CGD 473
D Y+ V + + Y A + + A G++ ++ + + + V + G+
Sbjct: 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533
+ ++ + + + +S ++ + + + L+
Sbjct: 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHL 163
Query: 534 YDAPGHWCTTMLYSADGSRLFSC------GTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
TT+ + +F ++ S V +
Sbjct: 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---------PR-LRF 637
+ + ++ + S +G + + PR
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 638 SKEGNLLAVTTADNG 652
G L +
Sbjct: 284 DHSGKYLIAAGQKSH 298
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 47/378 (12%), Positives = 95/378 (25%), Gaps = 57/378 (15%)
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
++A E QI W++++ LT T + + S + L V ++LA
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF-RVLAYR 65
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
I + S + S D
Sbjct: 66 I----------------------------------APDDGALTFAAESALPGSLTHISTD 91
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
+ + + + + S + S L
Sbjct: 92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL---- 147
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
L+ + + + P + E+ C+
Sbjct: 148 ----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP-------RHMVFHPNEQYAYCVNE 196
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
+ V ++ + T +M S + + P ++ A S I +
Sbjct: 197 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256
Query: 900 YNVRVDEVKSKLKGHQ---KRITGLAFSTSLNILVSSGADA-QLCVWSIDTWEKRKSVTI 955
++V D +G Q + G S L+++G + + V+ I +
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 316
Query: 956 HIPAGKTPTGDTRVQFNA 973
G+ P V NA
Sbjct: 317 RYAVGQGPMW---VVVNA 331
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 3e-04
Identities = 16/153 (10%), Positives = 43/153 (28%), Gaps = 8/153 (5%)
Query: 891 GTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTW 947
E IH++N+ + + + ++ + S L V + ++ + I
Sbjct: 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69
Query: 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTPQDA 1005
+ + + T + + + V + +++ + +
Sbjct: 70 DGALTFAAESALPGSLTH---ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126
Query: 1006 LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038
L S + N L I +F
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 6e-05
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 9/216 (4%)
Query: 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFA 460
D +V S G Y+ V + + + ++I
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519
+ +K + + + + H + + I ++ +
Sbjct: 118 WEDKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
Query: 520 IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
+ +T VDY + TT + + L G F+ N +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVI 234
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ + T A
Sbjct: 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 15/168 (8%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
+N + I + + E+K+ L + S S L G D ++ +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID 89
Query: 944 IDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVHE--TQLAIYDASKMERIRQW 1000
+ K + I G +T + + Q I D +E +
Sbjct: 90 LWM--KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147
Query: 1001 T-------PQDALSAPISCAVYSC--NSQLVFATFCDGNIGVFDADTL 1039
+ Q+ P A+ + + + G I + D L
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 0.002
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Query: 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900
+N V G+I+L + T+++ T + A + + D +++
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 901 NVRVDEVK-----SKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVT 954
++ + E + T + + Q + +T E +K +
Sbjct: 89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148
Query: 955 IHIPAGKT 962
Sbjct: 149 TRGMTYDE 156
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 0.002
Identities = 63/403 (15%), Positives = 113/403 (28%), Gaps = 54/403 (13%)
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
+ + + QI D I T D G + R S G L V D ++
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDT-GYAVH--ISRLSASGRYLFVIGRDGKVNMIDLW 91
Query: 660 IGLRSLRA---VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716
+ + A + + + +E K + + A E P +
Sbjct: 92 MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151
Query: 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT--- 773
+PR + +P + + ++G+ LV TD ++ +
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY---TDLNNLKTTEISAERF 208
Query: 774 ------NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
+ + +N KL E A Q P G + G
Sbjct: 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFG 266
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
P A S ++ G +K++ +F + S F+ HP +
Sbjct: 267 -------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 319
Query: 888 IAIGTE--------------------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFS--- 924
T D + + + + Q R+ F+
Sbjct: 320 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 379
Query: 925 TSLNILVSSGADAQ--LCVWSIDTWEKRKSVTIHIPAGKTPTG 965
T + V +G D + L V T E + + TPTG
Sbjct: 380 TEVWFSVWNGKDQESALVVVDDKTLELKHVIK--DERLVTPTG 420
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.003
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 821 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF 880
M ND V + A K ++ + + P L
Sbjct: 207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNT 265
Query: 881 HPQDNNIIAIGTEDSTIHIYNV-RVDEVKSKLKGHQKRITG----------LAFSTSLNI 929
P IA G T+ + + ++D++ + I F N
Sbjct: 266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325
Query: 930 LVSSGADAQLCVWSIDTWEK 949
+ D+Q+C W+I K
Sbjct: 326 YTTLFIDSQVCKWNIADAIK 345
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.004
Identities = 28/267 (10%), Positives = 72/267 (26%), Gaps = 29/267 (10%)
Query: 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394
V ++ GS + P + + + + ++++ + A + + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 395 LPFQASIFKDVPIS----------------------VSRVAWSPDGNYVGVAFTKHLIQL 432
P ++ S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492
+ + + + P+ V D I V + + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
EA I + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRT 579
++ + + + + + TI T
Sbjct: 258 VYVALS---FCNTVSVIDTATNTITAT 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1128 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.63 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.17 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.09 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.07 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.07 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.84 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.68 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.37 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.22 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.8 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.73 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.68 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.68 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.67 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.62 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.61 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.58 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.51 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.5 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.47 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.43 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.39 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.33 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.29 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.26 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.25 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.25 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.07 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.71 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.89 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.36 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.73 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.77 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 93.01 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.97 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.78 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 88.52 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.57 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.83 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 85.35 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=336.94 Aligned_cols=293 Identities=13% Similarity=0.187 Sum_probs=252.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+.+.+++|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++|
T Consensus 42 ~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred ceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 45677789999999999999999 789987 89999999987654321 122235689999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++|| .+++......+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 999999999999999999999865432 2235778999999999999999 899999999999999 888888999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
...|.+++|++ ++..+++++.|+.|++||+++++....+. +...|.+++|+|+++++++++ .++.+++||+.+
T Consensus 183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~----~d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM----ESSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTS
T ss_pred ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec----cccccccccccc
Confidence 99999999976 66899999999999999998876655544 667899999999999999987 489999999998
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
++... ...|.. .+.+++|+|++++|++++.||.|++||..+++.+..... ...|.+++|+|++++|++|+.||.|
T Consensus 256 ~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 256 PDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 87654 445555 799999999999999999999999999999998887753 3479999999999999999999999
Q ss_pred EEEEc
Q 001190 654 KILAN 658 (1128)
Q Consensus 654 ~iw~~ 658 (1128)
+|||+
T Consensus 331 ~vWdl 335 (337)
T d1gxra_ 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.2e-35 Score=321.78 Aligned_cols=284 Identities=21% Similarity=0.371 Sum_probs=259.4
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
.-+|.+.|++++|+|+|+ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++|+|++.
T Consensus 13 L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~~ 72 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGK 72 (317)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred EcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecccc
Confidence 346999999999999998 789999999999999999887643 788999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (317)
T d1vyhc1 73 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147 (317)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence 99999999999999998876554 4678999999999999999 799999999999999 88999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC--------------------eEEEeee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--------------------RLFSCGT 558 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~--------------------~l~~~~~ 558 (1128)
+++|++ ++.+|++++.|+.|++|++........+..+...+.++.++|++. .+++++
T Consensus 148 ~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (317)
T d1vyhc1 148 MVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS- 224 (317)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred eeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-
Confidence 999976 668999999999999999999999889999999999999987654 466665
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|++||..+++.+..+.+|.. .+.+++++|++++|++|+.||.|++||+.+++++..+..|. ..|++++|+
T Consensus 225 ---~d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~~~~~s 298 (317)
T d1vyhc1 225 ---RDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSLDFH 298 (317)
T ss_dssp ---TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEEEEC
T ss_pred ---CCCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEc
Confidence 489999999999999999999887 89999999999999999999999999999999999988654 489999999
Q ss_pred CCCCEEEEEEcCCcEEEEE
Q 001190 639 KEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~ 657 (1128)
|++++|++|+.||+|++||
T Consensus 299 ~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 299 KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-35 Score=323.42 Aligned_cols=282 Identities=12% Similarity=0.183 Sum_probs=242.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|...|.+++|+|+|++|++++ ||.|++||+....... ........ .|...|.+++|+||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~~~~~--~h~~~I~~v~~s~d 108 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDCL--NRDNYIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEECS--CTTSBEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEEeeec--CCCCcEEEEEEcCC
Confidence 899999999999999999986 8999999986432100 00111112 38889999999999
Q ss_pred CCeEEEEe-CCeEEEEECCC--ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMT--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
|++|++++ ||.|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.+++......+|...|.
T Consensus 109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 187 (337)
T d1gxra_ 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999998 89999999874 456677888999999999999 899999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
+++|++++.++++++.|+.|++||+.+++.+..... ...+.+++|+|++.+++++. ++.+++||+.+++...
T Consensus 188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 260 (337)
T d1gxra_ 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred cccccccccccccccccccccccccccceeeccccc-------ccceEEEEEcccccccceecccccccccccccccccc
Confidence 999999999999999999999999999876544332 26789999999999999875 8999999999887654
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.. .|...|.+++|+|||++|++++.||.|++||+.+++.+..+. |...+.+++|+| ++++|+
T Consensus 261 ~~----~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~s~-d~~~l~ 322 (337)
T d1gxra_ 261 LH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISV-DDKYIV 322 (337)
T ss_dssp EC----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------CSSCEEEEEECT-TSCEEE
T ss_pred cc----ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-------------CCCCEEEEEEeC-CCCEEE
Confidence 32 348899999999999999999999999999999999887765 335678999999 689999
Q ss_pred EEECCCcEEEEcC
Q 001190 1079 IGLTDGSVKVMEP 1091 (1128)
Q Consensus 1079 s~~~dg~i~iWd~ 1091 (1128)
+|+.||+|+|||+
T Consensus 323 t~s~D~~I~vWdl 335 (337)
T d1gxra_ 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEeCCCeEEEEEE
Confidence 9999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.4e-35 Score=317.51 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=243.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+++.+.+++++|+|+ .||.+ .++.|.+||+.+++... .+.+|.+.|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~-~l~~~-~~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGD-KIQYC-NGTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSS-EEEEE-ETTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCC-EEEEE-eCCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 455677899999999 45665 46789999998876553 3788999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--CCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..+++|+ .+++....+.+|...|++
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998876532 25778999999999999999 6777764 56799999 888999999999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++|+++.+ ..+++|+.||.|++||+++.+....+..|...|.++.++|+++++++++ .++.|++||..++..+..
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~----~d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCcccccccccc----cccccccccccccccccc
Confidence 99987432 3588999999999999999888888889999999999999999999987 489999999999888777
Q ss_pred ecc-------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 580 YAG-------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 580 ~~~-------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
+.. |.. .|.+++|+|++++|++|+.||.|+|||+++++++..+..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 443 7899999999999999999999999999999999988765432 2334455556678999999999
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999963
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.5e-35 Score=319.75 Aligned_cols=315 Identities=17% Similarity=0.286 Sum_probs=265.1
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
.|.........|.||.++|++++|+| ++.+|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++..
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 35534455678999999999999987 5689999999999999999999999999999999999999999999998874
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
++.+.+|+....+....+.++.. .+.++.++++++.+++++.|+.+++||+.+++.+..+..+. ..+.+++|+
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 152 (317)
T d1vyhc1 80 ----DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPN 152 (317)
T ss_dssp ----TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEEC
T ss_pred ----ccccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceeeecc
Confidence 78899999999988888888876 78889999999999999999999999999999988887554 478999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCC
Q 001190 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1128)
|++.+|++++.|+.|++|+..++. ....+.
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~------------------------------------------------- 182 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATKE-CKAELR------------------------------------------------- 182 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------------
T ss_pred cCCCEEEEEeCCCeEEEEeeccce-eeEEEe-------------------------------------------------
Confidence 999999999999999999987652 111111
Q ss_pred CCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCC
Q 001190 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1128)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~ 798 (1128)
+|...+..+.++|++......
T Consensus 183 -------------------------------------------~~~~~i~~~~~~~~~~~~~~~---------------- 203 (317)
T d1vyhc1 183 -------------------------------------------EHRHVVECISWAPESSYSSIS---------------- 203 (317)
T ss_dssp -------------------------------------------CCSSCEEEEEECCSCGGGGGG----------------
T ss_pred -------------------------------------------cCCCCceEEEEeeccccceee----------------
Confidence 145566667776665422111
Q ss_pred CCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeE
Q 001190 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (1128)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 877 (1128)
.........+..++.++++++ |+.|++||+.+++++.++.+|...|.+
T Consensus 204 -------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 252 (317)
T d1vyhc1 204 -------------------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252 (317)
T ss_dssp -------------------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred -------------------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence 111122233445677888887 899999999999999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 878 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
++|+| ++++|++|+.||.|++||+.+++++.++.+|.++|++++|+|++++|++|+.||+|+|||
T Consensus 253 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 253 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999 899999999999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-34 Score=325.69 Aligned_cols=307 Identities=17% Similarity=0.260 Sum_probs=240.9
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.+...++|++.|+|++|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|++++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEEC
Confidence 4456678999999999999999 789986 899999999998876532110000 0000111222356789999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|+|++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| .+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999987665 4778999999999999999 799999999999999 6666666666555
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
. ..++.+.+ .++.+|++++.||.|++|+..+......+. .|...|.+++|+|++++|++++. ++.|+
T Consensus 206 ~-~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 G-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp C-EEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred c-cccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4 45555544 367899999999999999998877665443 45678999999999999999884 89999
Q ss_pred EEeCCCCcee------------eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 568 EWNESEGTIK------------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 568 ~wd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
+||+.++... .....|.. .+.+++|+|++++|++|+.||.|++||+.+++++..+..|. ..|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~--~~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC--CCEEEE
Confidence 9999865432 33444544 78999999999999999999999999999999999988654 478777
Q ss_pred E------EcCCCCEEEEEEcCCcEEEEEcc
Q 001190 636 R------FSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 636 ~------~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+ |+|++.+|++|+.||+|+||+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6 56799999999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-33 Score=318.42 Aligned_cols=292 Identities=15% Similarity=0.108 Sum_probs=233.5
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+.++|+|++|||||+ +||+|+.||.|+|||+.+++... ...+.+|.++|.+++|+|++++|+
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~-----------------~~~l~gH~~~V~~l~fsp~~~~l~ 67 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQ-----------------VHELKEHNGQVTGVDWAPDSNRIV 67 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEEETTTTEEE
T ss_pred CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEE-----------------EEEecCCCCCEEEEEECCCCCEEE
Confidence 346899999999999 78999999999999998776432 134789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe----EEEecCCCCCe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEAPV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~----~~~~~~h~~~v 497 (1128)
+|+.|++|+|||+.++..... ..+.+|...|++++|+|+++ .|++|+.|++|++|+ ..+.. .....+|...|
T Consensus 68 s~s~D~~i~vWd~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 68 TCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEECCCeEEEEeecccccccc-cccccccccccccccccccc--cceeecccCcceeeeeeccccccccccccccccccc
Confidence 999999999999998754332 34678999999999999999 899999999999999 44432 34456799999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCC------------------ceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------------------~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
.+++|+| ++.+|++|+.|+.|++|+..... .......+...|.+++|+|+|++|++++
T Consensus 145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-- 220 (371)
T d1k8kc_ 145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-- 220 (371)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE--
T ss_pred ccccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc--
Confidence 9999977 67899999999999999975432 2234456677899999999999999988
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC--CeeeEEE--------------
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTST-------------- 623 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~-------------- 623 (1128)
.|+.|++||+.+++.+..+..|.. .+.+++|+|++.+|++ +.|+.+++|.... +......
T Consensus 221 --~d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
T d1k8kc_ 221 --HDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296 (371)
T ss_dssp --TTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred --cCCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence 489999999999999999998876 7999999999876655 5577776665432 2211100
Q ss_pred -----------------------ecCCCCCCcceEEEcCCC----CEEEEEEcCCcEEEEEcccCcc
Q 001190 624 -----------------------DAEGGLPNLPRLRFSKEG----NLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 624 -----------------------~~~~~~~~v~~v~~sp~~----~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
....|...|.++++.+.+ ..+++++.||.|++||+++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~ 363 (371)
T d1k8kc_ 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363 (371)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcChh
Confidence 000144568888887743 4689999999999999976533
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-33 Score=305.58 Aligned_cols=285 Identities=13% Similarity=0.133 Sum_probs=233.2
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+.+....++++|+|+.++.+. ++.+.+|++... .... .+.+ |...|++++|+||
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~----------------------~~~~-~~~~--H~~~v~~~~~sp~ 69 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL----------------------TDTE-IYTE--HSHQTTVAKTSPS 69 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS----------------------SCCE-EECC--CSSCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC----------------------ceeE-EEcC--CCCCEEEEEEeCC
Confidence 445667889999999988775 557888876532 1111 1233 8999999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEecccceeeecccccccC
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
|++||+|+ ||+|++||+.+++. ...+..|...|.+++|+| ++++|++++. +..++||++++++....+.+|.+.
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~ 148 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999998 99999999988764 356788999999999999 8999988875 456999999999999999999999
Q ss_pred eeEEEEcCCCCE-EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcc
Q 001190 918 ITGLAFSTSLNI-LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKME 995 (1128)
Q Consensus 918 V~~l~~s~d~~~-l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~ 995 (1128)
|++++|+|++++ |++|+.|+.|++||+.+++..... ..+. ..+.++.|+|+++++++++ |+.+++||..++.
T Consensus 149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-----~~~~-~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-----GEHT-KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222 (311)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-----CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cccccccccceeeeccccccccccccccccccccccc-----cccc-ccccccccCcccccccccccccccccccccccc
Confidence 999999999885 888999999999999987654332 2333 7899999999999999876 8999999999888
Q ss_pred cccccccC----CCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 996 RIRQWTPQ----DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 996 ~~~~~~~~----~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
.+..+... .+|...|.+++|+|||++|++|+.||.|+|||+.+++++..+.... .....+.++.|+
T Consensus 223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~---------~~~~~~~~~~~~- 292 (311)
T d1nr0a1 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT---------RIEDQQLGIIWT- 292 (311)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS---------SGGGCEEEEEEC-
T ss_pred ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC---------CccceEEEEEec-
Confidence 76655432 2468899999999999999999999999999999999988877321 222344556554
Q ss_pred CCCCEEEEEECCCcEEEEcCC
Q 001190 1072 LEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++.|++++.||.|++||++
T Consensus 293 --~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 --KQALVSISANGFINFVNPE 311 (311)
T ss_dssp --SSCEEEEETTCCEEEEETT
T ss_pred --CCEEEEEECCCEEEEEeCC
Confidence 4679999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.8e-33 Score=308.37 Aligned_cols=343 Identities=18% Similarity=0.279 Sum_probs=243.7
Q ss_pred ceeccCCCcce-EEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 399 ASIFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 399 ~~~~~~h~~~V-~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
+..|+||...| +|++ ++|++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCE
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccc
Confidence 34589998886 5554 568899999999999999999988766 588999999999999865 68999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
++|+ ..+........+............+++.++++++.|+.|++||+................ .....+..
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 149 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEE------ 149 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTT------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecccc------
Confidence 9999 777776666655555544444345577899999999999999987654433222111100 01111111
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
..........|. .....+.++++.+++++.|+.|++||+.+++.+....... ..+.++.
T Consensus 150 ----------------~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~ 208 (355)
T d1nexb2 150 ----------------NPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTI 208 (355)
T ss_dssp ----------------CTTEEEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEE
T ss_pred ----------------ccceeeeeeecc---ccccccccccceeeeecccceeeeeecccccceeeeeccc--ccccccc
Confidence 111112222222 2234556678999999999999999999999888776543 3688999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1128)
++|++.++++++.|+.|++|+..++.. ...+
T Consensus 209 ~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~------------------------------------------------ 239 (355)
T d1nexb2 209 YDHERKRCISASMDTTIRIWDLENGEL-MYTL------------------------------------------------ 239 (355)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTCCE-EEEE------------------------------------------------
T ss_pred ccccceeeecccccceEEeeecccccc-cccc------------------------------------------------
Confidence 999999999999999999999765411 0000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeecccc
Q 001190 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1128)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~ 796 (1128)
T Consensus 240 -------------------------------------------------------------------------------- 239 (355)
T d1nexb2 240 -------------------------------------------------------------------------------- 239 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCe
Q 001190 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (1128)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v 875 (1128)
. .|...|.+++++ +++|++++ ||.|++||+.++..... .|...+
T Consensus 240 -----------------------------~--~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~ 284 (355)
T d1nexb2 240 -----------------------------Q--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNL 284 (355)
T ss_dssp -----------------------------C--CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTC
T ss_pred -----------------------------c--cccccccccccc--cceeeeeecccccccccccccceecc--cccCCc
Confidence 0 145556666664 35677776 77788888776655433 355555
Q ss_pred eEE-EEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 876 TFL-AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 876 ~~l-~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
.++ .+++ +++++++|+ ||.|+|||+++++++. .+.+|.++|.+++|+|+ .++++++.||+++||.+
T Consensus 285 ~~~~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 285 SAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCCCEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred eEEEEEcC-CCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 555 4555 777777665 8999999999999885 57889999999999987 57888999999777654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-33 Score=320.09 Aligned_cols=308 Identities=13% Similarity=0.153 Sum_probs=236.0
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+|.+.|++++|+|||++|++|+ |+.|++|++..... ................. .......|...|++++|+|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~s~ 131 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL------VARLSDDSAANKDPENL-NTSSSPSSDLYIRSVCFSP 131 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE------EEEECC------------------CCCCBEEEEEECT
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce------Eeeeccccccccccccc-ccccccCCCCCEEEEEECC
Confidence 4999999999999999988875 89999999865331 11100000000000000 0011123788899999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
||++|++|+ ||.|++||...++.+..+.+|...|.++++++ ++..+++++.++.+++||..+.........+...+..
T Consensus 132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 210 (388)
T d1erja_ 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210 (388)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred CCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccc
Confidence 999999998 89999999999999999999999999999999 8999999999999999999999888777766665555
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee--cCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI--PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI 997 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~ 997 (1128)
..+.+++.+|++++.|+.|++||+.++.......... ..+| ...+.+++|+|++.+|++++ |+.|++||+.++...
T Consensus 211 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 289 (388)
T d1erja_ 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289 (388)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred cccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC-CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence 5555688999999999999999999987655443221 1222 26899999999999999875 899999999876554
Q ss_pred ccccc---------CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEE
Q 001190 998 RQWTP---------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1068 (1128)
Q Consensus 998 ~~~~~---------~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1128)
..... ...|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. +|...|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~------------~H~~~V~~~~ 357 (388)
T d1erja_ 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ------------GHRNSVISVA 357 (388)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE------------CCSSCEEEEE
T ss_pred cccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe------------CCCCCEEEEE
Confidence 32221 12357899999999999999999999999999999999999888 5566677776
Q ss_pred E------ecCCCCEEEEEECCCcEEEEcCC
Q 001190 1069 A------HPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1069 ~------~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+ +| ++.+|++|+.||+|+||++.
T Consensus 358 ~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 358 VANGSSLGP-EYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred EecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence 5 56 68899999999999999975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.8e-32 Score=302.91 Aligned_cols=292 Identities=18% Similarity=0.269 Sum_probs=252.0
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
....++|. |.+.|+|++|+|+|+ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 34556664 999999999999999 789999999999999999887653 778999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcc-eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
|+|++.++++|+.|+.+++|+....... .....+.+|...........+. .++.+..|.....|+ ..........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 9999999999999999999998765432 2233567888877777776665 477788899999999 6777777777
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.+...+....+.+ .+.++++++.|+.|++||+++......+..|...|.+++|+|+++++++++ .++.|++||+
T Consensus 182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s----~d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS----DDATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEET
T ss_pred ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe----CCCeEEEEee
Confidence 7888888888765 557999999999999999999998889999999999999999999999988 4899999999
Q ss_pred CCCceeeEeccc-cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 572 SEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 572 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
........+... ....+..++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+|++++|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETT
T ss_pred cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEccC
Confidence 999887776433 23368899999999999999999999999999999999887654 489999999999999999999
Q ss_pred CcEEEEE
Q 001190 651 NGFKILA 657 (1128)
Q Consensus 651 g~i~iw~ 657 (1128)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6e-32 Score=300.15 Aligned_cols=287 Identities=15% Similarity=0.211 Sum_probs=251.0
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
++|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeec
Confidence 3589999999999999999999999999999999999988765 5778999999999999999 8999999999999
Q ss_pred Ee-cCC----CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 480 Wd-~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
|+ ... .....+.+|........... +..+.....|.....|.................+....+.+.+.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence 99 332 34567788888777665432 35788888999999999888777777778888899999999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
++. .++.|++||+++++.+..+.+|.. .|.+++|+|++++|++|+.||.|++|++........+....+...|.+
T Consensus 201 ~~~----~d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 201 SGA----CDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEE----TTTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred Eee----cCceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 887 489999999999999999999887 899999999999999999999999999999998888877777778999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
++|+|++++|++|+.||.|++||+.++. ....
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~----------------------------------------------- 307 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGV----------------------------------------------- 307 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCC-EEEE-----------------------------------------------
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCc-EEEE-----------------------------------------------
Confidence 9999999999999999999999987652 1111
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
+ .+|.+.|.+++|+|++.+|++++.||.|++||
T Consensus 308 ------------------------------------------~---~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 308 ------------------------------------------L---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------------------------------------E---CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------------------------------------------E---cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 1 22788999999999999999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-32 Score=297.05 Aligned_cols=285 Identities=9% Similarity=0.099 Sum_probs=224.5
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
-+|.+.|+|++|+|||+ +|++|+.||+|+|||+.+++.+.. ...+|...|++++|+|+|++
T Consensus 9 ~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~~~g~~ 69 (299)
T d1nr0a2 9 YGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTTSKGDL 69 (299)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEECTTSCE
T ss_pred CCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEeecccee
Confidence 35999999999999999 789999999999999999887642 23579999999999999975
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~ 500 (1128)
+ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+. ++..... ....+.++
T Consensus 70 ~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~-~~~~~~~--~~~~~~~~ 142 (299)
T d1nr0a2 70 F-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSH-GKLTEVP--ISYNSSCV 142 (299)
T ss_dssp E-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEET-TEEEEEE--CSSCEEEE
T ss_pred e-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-ccccccccc-ccccccc--cccccccc
Confidence 5 566799999999876543322223456788899999999998 455554 679999992 2223333 33457888
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee-
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 578 (1128)
+|++ +++++++++.||.|++||++...... ....|...|.+++|+|+++++++++ .++.|++||+.++....
T Consensus 143 ~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 143 ALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD----QSRKVIPYSVANNFELAH 216 (299)
T ss_dssp EECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE----TTSCEEEEEGGGTTEESC
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccc
Confidence 8876 66899999999999999998765443 4456778999999999999999987 48899999998876544
Q ss_pred --EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-CCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 579 --TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 579 --~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
.+.+|.. .+.+++|+|++++|++|+.||.|++||++++..........+ ...+.++. ++++++|++++.|+.|++
T Consensus 217 ~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 217 TNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKF 294 (299)
T ss_dssp CCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEE
T ss_pred ccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEE
Confidence 4455655 899999999999999999999999999988765444433333 33455554 566789999999999999
Q ss_pred EEcc
Q 001190 656 LANA 659 (1128)
Q Consensus 656 w~~~ 659 (1128)
||+.
T Consensus 295 Wdl~ 298 (299)
T d1nr0a2 295 WNVP 298 (299)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9973
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-31 Score=298.56 Aligned_cols=347 Identities=15% Similarity=0.200 Sum_probs=257.3
Q ss_pred eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
..+++||....+.|+++ ++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+ .+|++++.|+.|++|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCC--CCEEEEEEcCC-CEEEEEecccccccc
Confidence 45688998855666555 57899999999999999999999999998654 48999999986 589999999999999
Q ss_pred EcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCC
Q 001190 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1128)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1128)
+............
T Consensus 80 ~~~~~~~~~~~~~------------------------------------------------------------------- 92 (355)
T d1nexb2 80 DIKKGCCTHVFEG------------------------------------------------------------------- 92 (355)
T ss_dssp ETTTTEEEEEECC-------------------------------------------------------------------
T ss_pred ccccccccccccc-------------------------------------------------------------------
Confidence 9876521111000
Q ss_pred CCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccC
Q 001190 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1128)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1128)
..+........+.+++..+++++.|+.+++|++.......................
T Consensus 93 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d1nexb2 93 ------------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148 (355)
T ss_dssp ------------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred ------------------------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence 01223445667788999999999999999999876432211111100000000110
Q ss_pred CCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.......... .|...+ ..+.+++++++++. |+.|++||+.+++.+....++...+.++.+++ ++.++++++.|+
T Consensus 149 ~~~~~~~~~~--~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 223 (355)
T d1nexb2 149 ENPYFVGVLR--GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDT 223 (355)
T ss_dssp TCTTEEEEEE--CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTS
T ss_pred cccceeeeee--eccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccc
Confidence 0000000011 133333 45567889999887 89999999999999999999999999999999 899999999999
Q ss_pred cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCC
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 975 (1128)
.|++||+.++..+..+.+|...|.+++++ +++|++++.||.|++||+.++... ...+ .........+++++
T Consensus 224 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-----~~~~~~~~~~~~~~ 294 (355)
T d1nexb2 224 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYH-----HTNLSAITTFYVSD 294 (355)
T ss_dssp CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEE-----CTTCCCCCEEEECS
T ss_pred eEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee--cccc-----cCCceEEEEEcCCC
Confidence 99999999999999999999999999997 469999999999999999987542 2222 11223345678899
Q ss_pred CEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 976 VRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 976 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
.++++++|+.|++||+++++.+..... .|..+|.+++|+|+ .++++++.||.++||.+
T Consensus 295 ~~l~~g~d~~i~vwd~~tg~~~~~~~~--~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 295 NILVSGSENQFNIYNLRSGKLVHANIL--KDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp SEEEEEETTEEEEEETTTCCBCCSCTT--TTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEec--CCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999999999999999999998764333 24789999999986 57778899999777654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-31 Score=300.87 Aligned_cols=243 Identities=15% Similarity=0.127 Sum_probs=204.0
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
-.+|+|++|||||++||+|+.||.|+|||.++++.. ....+.+|.++|++++|+|+++ +|++|+.|++|++|| .++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 468999999999999999999999999999987633 3346889999999999999999 899999999999999 555
Q ss_pred C--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 485 R--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 485 ~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
. ....+.+|...|.+++|+| +++.|++++.|+.|++|+++...... ....+...|.+++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccc--ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 4 3455678999999999977 66899999999999999988766543 33456778999999999999999884
Q ss_pred ccCCCceEEEEeCCCC------------------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 559 SKDGDSFLVEWNESEG------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|+.+++|+.... +......+|.. .+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 162 ----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 162 ----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp ----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred ----CcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccce
Confidence 899999997643 23444555555 7899999999999999999999999999999998
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+..+. .+|.+++|+|++++|++|+ |+.+++|.....
T Consensus 237 ~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 237 ATLASET--LPLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp EEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred eeeeccc--ccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 8887654 4799999999998887655 777777776554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-30 Score=283.98 Aligned_cols=275 Identities=18% Similarity=0.274 Sum_probs=220.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+ +|
T Consensus 14 GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~~--~l 70 (342)
T d2ovrb2 14 GHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRDN--II 70 (342)
T ss_dssp CSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEETT--EE
T ss_pred CcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEeCCC--cc
Confidence 69999875 4777888 789999999999999999987753 7889999999999975 99
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+ .+++....+..+.......
T Consensus 71 ~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 71 ISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred ccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccccceee
Confidence 999999999999998865443 2344555565555543 3 577888999999999 8888877777666555444
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
.. ....+++++.|+.|++||.........+..+...+..+ ++++.++++++ .|+.|++||+..++.+..+
T Consensus 144 ~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~----~dg~i~~~d~~~~~~~~~~ 213 (342)
T d2ovrb2 144 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS----LDTSIRVWDVETGNCIHTL 213 (342)
T ss_dssp EE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE----TTSCEEEEETTTCCEEEEE
T ss_pred cc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe----CCCeEEEeecccceeeeEe
Confidence 32 33578999999999999999888888887777666554 45788999988 4899999999999999999
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC-CCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
.+|.. .+.+++++ +++|++++.||.|++||....+....+..+. +...+.++.+ +++++++|+.||.|++||++
T Consensus 214 ~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 214 TGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp CCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred ccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence 98876 67666665 5799999999999999999988877775432 3334444544 56799999999999999998
Q ss_pred cC
Q 001190 660 IG 661 (1128)
Q Consensus 660 ~~ 661 (1128)
++
T Consensus 289 tg 290 (342)
T d2ovrb2 289 TG 290 (342)
T ss_dssp TC
T ss_pred CC
Confidence 77
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6e-31 Score=286.32 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=222.2
Q ss_pred CCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
.||.+.|++++|+|+|++|++++.||.|++||+.. +........+ |...|.+++|+
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~----------------------~~~~~~~~~~--h~~~v~~v~~~ 64 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFPDV--HATMITGIKTT 64 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSSCS--CSSCEEEEEEC
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------CcEEEEEcCC--CCCcEEEEEee
Confidence 46999999999999999999999999999998643 2222222222 88899999999
Q ss_pred cCCCeEEEEeCCeEEEEECCCceE---EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC
Q 001190 841 KNDSYVMSATGGKISLFNMMTFKV---MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
|+|++++++.|+.+++|+...... ......+...+.+++|++ +++++++++ ++.+++|+.... .... ....
T Consensus 65 ~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~~--~~~~--~~~~ 138 (299)
T d1nr0a2 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGKL--TEVP--ISYN 138 (299)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTEE--EEEE--CSSC
T ss_pred ccceeecccceeeEEEeccCCcccccccccccccccccccccccc-ccccccccc-cccccccccccc--cccc--cccc
Confidence 999988888899999999865432 122334677899999999 888777665 678999985432 2222 3346
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccc
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 996 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 996 (1128)
+.+++|+|++++|++++.|+.|++||+.+++........ | ...+.+++|+|++.++++++ ++.|++||+.++..
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 213 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV----H-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 213 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE----C-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred ccccccccccccccccccccccccccccccccccccccc----c-ccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999887643322221 2 26799999999999999876 89999999998887
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCE
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1076 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1076 (1128)
+........|...|.+++|+|++++|++|+.||.|+|||++++......... ..+...+.++.|.+ +.+
T Consensus 214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~~--~~~ 282 (299)
T d1nr0a2 214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG---------AHAMSSVNSVIWLN--ETT 282 (299)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT---------SSTTSCEEEEEEEE--TTE
T ss_pred ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec---------CCCCCcEEEEEECC--CCE
Confidence 7766666667899999999999999999999999999999987654333211 12223344555543 679
Q ss_pred EEEEECCCcEEEEcCC
Q 001190 1077 FAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1077 l~s~~~dg~i~iWd~~ 1092 (1128)
|++|+.||+|++||++
T Consensus 283 l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 283 IVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEeCCCEEEEEecc
Confidence 9999999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-30 Score=285.55 Aligned_cols=317 Identities=18% Similarity=0.286 Sum_probs=246.4
Q ss_pred eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEE
Q 001190 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1128)
Q Consensus 445 ~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 523 (1128)
.+++||.+.|.+ +++++|+ +|+||+.||+|+||| .+++++..+.+|.+.|.+++|++ .+|++++.|+.+++|
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 82 (342)
T ss_dssp EEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccccc
Confidence 368899999876 4777888 899999999999999 89999999999999999999964 389999999999999
Q ss_pred ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE
Q 001190 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1128)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1128)
+................+......+ ..+..+. .++.+.+|+..+++....+..... ...........++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHLHE--KRVVSGS----RDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSG 153 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEET--TEEEEEE----TTSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEE
T ss_pred ccccccceecccccceeEeeeeccc--ccccccc----cceeEEEeecccccceeeeecccc---cceeeccccceeeee
Confidence 9988777766666666666555443 3455554 488999999999988877766543 223445566789999
Q ss_pred ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 604 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
+.|+.|++||......+..+..+. .....+++++.++++++.||.|++||+..+.. ....
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~-~~~~--------------- 213 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-IHTL--------------- 213 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCE-EEEE---------------
T ss_pred cCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeeccccee-eeEe---------------
Confidence 999999999999998888876543 34556667889999999999999999765410 0000
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
.
T Consensus 214 -----------------------------------------------------------------------------~-- 214 (342)
T d2ovrb2 214 -----------------------------------------------------------------------------T-- 214 (342)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
.|...+.++++ ++
T Consensus 215 -----------------------------------------------------------------~~~~~v~~~~~--~~ 227 (342)
T d2ovrb2 215 -----------------------------------------------------------------GHQSLTSGMEL--KD 227 (342)
T ss_dssp -----------------------------------------------------------------CCCSCEEEEEE--ET
T ss_pred -----------------------------------------------------------------ccccceeEEec--CC
Confidence 03344444444 34
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeC---CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc-----ccc
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-----KGH 914 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~---~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-----~~h 914 (1128)
++|++++ |+.|++||+...+....+.. |...+.++.++ +.++++|+.||+|++||+.+++.+.++ .+|
T Consensus 228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~ 304 (342)
T d2ovrb2 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304 (342)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence 5777776 77788888877777766654 44556666664 469999999999999999999888766 368
Q ss_pred ccCeeEEEEcCCCCEEEEEcCCCc----EEEEECCC
Q 001190 915 QKRITGLAFSTSLNILVSSGADAQ----LCVWSIDT 946 (1128)
Q Consensus 915 ~~~V~~l~~s~d~~~l~s~~~Dg~----i~iwd~~~ 946 (1128)
.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 889999999999999999999986 99999874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.2e-30 Score=284.82 Aligned_cols=290 Identities=13% Similarity=0.217 Sum_probs=224.4
Q ss_pred CcEEEEEEeCCCCcEEEEeecc-CeEEEEEccCCceecccccccccccccCccccceeccCC-CcceEEEEEcc--CCCE
Q 001190 345 STVISMDFHPSHQTLLLVGSSN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSP--DGNY 420 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~~ 420 (1128)
..+++++|+|+|+ .+|.++.+ ..|+.|+....+.. ....+.+| ...|++++|+| +|++
T Consensus 18 ~~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVP-----------------PVVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTT-EEEEEETTEEEEEECCSSCCSSC-----------------SEEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCCCcc-----------------ceEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 3578999999999 45655433 23445554332211 11235666 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEccCCCcceec-----eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
||+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+.+++++.++.+++|+ .+++.+..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 999999999999999876654322 1345688999999999999953334445678899999 8899999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CCCCeEEEEEEcCC-CCeEEEeeeccCCCceEEEEe
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd 570 (1128)
..|.+++|++..+ .++++++.|+.+++||+...+...... .+...|.+++|+|+ +.++++++ .|+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~----~d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG----SDRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE----TTCCEEEEE
T ss_pred ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc----cccceeeee
Confidence 9999999987532 467889999999999987766555443 44568999999997 56777777 489999999
Q ss_pred CCCCceeeEeccccCCceeEEEEe---CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC-CCEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFD---TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNLLAV 646 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~ 646 (1128)
+++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|+|||+++++++..+..+.+...+..+++.+. +.+|++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 999999999998876 55444444 6889999999999999999999999999887776544555555543 358899
Q ss_pred EEcCCcEEEEEc
Q 001190 647 TTADNGFKILAN 658 (1128)
Q Consensus 647 ~~~dg~i~iw~~ 658 (1128)
++.||.|++||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.9e-29 Score=274.78 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=217.6
Q ss_pred cccEEEEEEecCcceEEEeeccc-eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCC-CCCeeEEEecc
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL-EEAVPCIALSK 841 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~ 841 (1128)
...+.+++|+|+|..++.++.+. .++.|+...... .....+.+ | ...|++++|+|
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~g--h~~~~v~~v~fsP 73 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTG--HGSSVVTTVKFSP 73 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECT--TTTSCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeC--CCCCCEEEEEEee
Confidence 34567899999999998876553 355564221110 00011222 4 56799999998
Q ss_pred --CCCeEEEEe-CCeEEEEECCCceE--------EEEeeCCCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEecccceee
Q 001190 842 --NDSYVMSAT-GGKISLFNMMTFKV--------MTTFMSPPPASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 842 --dg~~la~~~-dg~i~vwd~~~~~~--------~~~~~~~~~~v~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~ 908 (1128)
+|++|++|+ ||+|++||+..++. ...+..|.++|.+++|++ +++++++++ .++.+++|+.++++.+
T Consensus 74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (325)
T d1pgua1 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSL 152 (325)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccc
Confidence 678999998 89999999875432 234557889999999999 888887765 4678999999999999
Q ss_pred ecccccccCeeEEEEcCCCCE-EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CCEEEEEe-cCe
Q 001190 909 SKLKGHQKRITGLAFSTSLNI-LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQ 985 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~-l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~-d~~ 985 (1128)
..+.+|...|++++|+|++.+ +++++.|+.|++||+..++..... .....+ ...+.+++|+|| +.+++++. |+.
T Consensus 153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~--~~~~~~-~~~v~~v~~~pd~~~~l~s~~~d~~ 229 (325)
T d1pgua1 153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD--RTHHKQ-GSFVRDVEFSPDSGEFVITVGSDRK 229 (325)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE--CSSSCT-TCCEEEEEECSTTCCEEEEEETTCC
T ss_pred eeeeecccccccccccccccceEEEeecccccccccccccccceec--ccccCC-CCccEEeeeccccceeccccccccc
Confidence 999999999999999999875 778999999999999886543322 222222 267899999997 57777764 999
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEe---eCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCcc
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYS---CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
|++||+.+++.+..+..+ ..++..+.|+ +||++|++++.|+.|+|||+++++.+..+.. +.+..
T Consensus 230 i~iwd~~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~----------~~~~~ 296 (325)
T d1pgua1 230 ISCFDGKSGEFLKYIEDD---QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL----------DKQQL 296 (325)
T ss_dssp EEEEETTTCCEEEECCBT---TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CTTCG
T ss_pred eeeeeecccccccccccc---ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe----------cCCcc
Confidence 999999999998888765 4555555554 6899999999999999999999999887763 23333
Q ss_pred c--eEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1063 Y--PLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1063 ~--~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
. ..++.|.+ ..+|++++.||+|++||+
T Consensus 297 ~~~~~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 297 GNQQVGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GGCEEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred cCeEEEEEECC--CCEEEEEECCCEEEEEEC
Confidence 3 34455544 468999999999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=7.7e-27 Score=265.70 Aligned_cols=366 Identities=10% Similarity=0.019 Sum_probs=263.4
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~ 438 (1128)
++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|+.|++||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 468889999999999999998764 4444 36999999999999999999999999999987
Q ss_pred Ccc--eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe
Q 001190 439 NDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1128)
Q Consensus 439 ~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1128)
+.. ..+....+|.+.+.+.+|+|||++ ++++++.+++|++|| .+++++..+..|...+..+.+.+.
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------- 162 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------- 162 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC----------
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC----------
Confidence 643 233334567888888899999995 457899999999999 899999888877654443333221
Q ss_pred ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.....+.++++|..++.... .++.|.+||..+++.........+.....++|+|
T Consensus 163 -----------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 163 -----------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp -----------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred -----------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 12345678899988776553 4788999999888766555444444678899999
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCeeeEEEecCC---CCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccC
Q 001190 596 TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG---GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 596 ~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.|.+|......
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-------- 288 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-------- 288 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc--------
Confidence 999988877 45689999999998887765432 111222233333333333332 25666666543210
Q ss_pred CccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCC
Q 001190 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1128)
Q Consensus 671 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (1128)
T Consensus 289 -------------------------------------------------------------------------------- 288 (432)
T d1qksa2 289 -------------------------------------------------------------------------------- 288 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCC
Q 001190 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1128)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1128)
. ..|...+...++++++..+++++.+...++|...... .+
T Consensus 289 ------~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-------------------------------~~ 328 (432)
T d1qksa2 289 ------H---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------------------------------PE 328 (432)
T ss_dssp ------C---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-------------------------------SS
T ss_pred ------c---cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-------------------------------CC
Confidence 0 1145567778888888888888888888888632110 02
Q ss_pred CCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe-----CCCcEEEEeccc
Q 001190 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-----EDSTIHIYNVRV 904 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~ 904 (1128)
......+++ ||++.+++++ |+.+++|++.++..+ ..|...+.+++||| ||++++.+. .+|.|.|||..+
T Consensus 329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCC
Confidence 222334555 8999999998 889999998665332 35777899999999 888775543 468899999999
Q ss_pred ceeeeccccc
Q 001190 905 DEVKSKLKGH 914 (1128)
Q Consensus 905 ~~~~~~l~~h 914 (1128)
+++...+++.
T Consensus 404 ~k~~~~i~~~ 413 (432)
T d1qksa2 404 LELKHVIKDE 413 (432)
T ss_dssp TEEEEEECCT
T ss_pred ceEEeEecCC
Confidence 9988877653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.6e-26 Score=245.80 Aligned_cols=268 Identities=18% Similarity=0.252 Sum_probs=215.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|...|+|++ +||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|++++| ++++|
T Consensus 13 ~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--cccee
Confidence 4888999875 4787 789999999999999999887653 8899999999887 67899
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecCCCCCe
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPV 497 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~h~~~v 497 (1128)
++|+.|+.|++|++..+..... ...+. .....+.+... .++++..++.+++|| .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLNT---LIHHC--EAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEEE---ECCCC--SCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred eccccccccccccccccccccc---ccccc--ccccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 9999999999999999875542 22222 23334555555 688999999999999 4443 345667888889
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+.+.. ..+++++.|+.|++||+++.+....+..+...+..+.++ +..+++++ .|+.|++||+.+.+.+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~----~dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS----SDNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE----TTSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec----CCCEEEEEecccceee
Confidence 8887643 478899999999999999998888888888888887765 56788877 4899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC---------CeeeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
..+.++.. .+. .+++++.+|++++.||.|++||+.+ ...+..+.. |...|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEEC--SSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC--CCCCEEEEEEc--CCEEEEEe
Confidence 99988765 443 4667889999999999999999743 234555554 45589999984 56899999
Q ss_pred cCCcEEEEE
Q 001190 649 ADNGFKILA 657 (1128)
Q Consensus 649 ~dg~i~iw~ 657 (1128)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=262.34 Aligned_cols=351 Identities=13% Similarity=0.154 Sum_probs=224.9
Q ss_pred CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecc
Q 001190 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1128)
.+|...|.++++++ +++++++.|++|++||..+...............+...+..+.......
T Consensus 11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 73 (393)
T d1sq9a_ 11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE--------------- 73 (393)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE---------------
T ss_pred CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeec---------------
Confidence 46677899999865 6999999999999999765421110000000000111111111100000
Q ss_pred cCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEe--cCCCCCcccEEEEEEecC-----cce
Q 001190 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM--PESTDTSSKVVRLLYTNS-----AVG 778 (1128)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~s~~-----g~~ 778 (1128)
....++..+++++.|+.+++|++.............. .....+...+..+++.++ +.+
T Consensus 74 ---------------~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (393)
T d1sq9a_ 74 ---------------RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138 (393)
T ss_dssp ---------------TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred ---------------cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccE
Confidence 0011233566888899999999876544443333222 222335566778888765 467
Q ss_pred EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEE
Q 001190 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1128)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw 857 (1128)
+++++.||.+++|++.......... .. .................+...+.+++|+||+ +||+|+ ||+|++|
T Consensus 139 ~~~~~~dg~i~vw~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iw 210 (393)
T d1sq9a_ 139 LVATDVKGTTYIWKFHPFADESNSL-----TL--NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 210 (393)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHT-----TT--CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred EEEEcCCCcEEEEEeecCCccccee-----ee--eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 8999999999999986432100000 00 0000000000001111256678999999998 888887 8999999
Q ss_pred ECCCceEEEEe------eCCCCCeeEEEEcCCCCCEEEEEeCCCc---EEEEecccceeeecc-------------cccc
Q 001190 858 NMMTFKVMTTF------MSPPPASTFLAFHPQDNNIIAIGTEDST---IHIYNVRVDEVKSKL-------------KGHQ 915 (1128)
Q Consensus 858 d~~~~~~~~~~------~~~~~~v~~l~~s~~d~~~lasg~~dg~---v~iwd~~~~~~~~~l-------------~~h~ 915 (1128)
|+.+++.+..+ .+|...|.+++|+| ++++|++|+.|++ |++||+.+++.+..+ .+|.
T Consensus 211 d~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~ 289 (393)
T d1sq9a_ 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289 (393)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred eecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc
Confidence 99999887654 46889999999999 9999999999875 899999998877665 4899
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
+.|++++|+||+++|+|++.|++|+|||+.+++++..+..+..... .....++|++++..++.+.. ..++.+..+.
T Consensus 290 ~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 365 (393)
T d1sq9a_ 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGV--FDVKFLKKGW 365 (393)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCE--EEEEEECTTT
T ss_pred CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc--CCccEEEECCCCCEEEEccc--ceEEECccCc
Confidence 9999999999999999999999999999999987666543321111 23346889999987764432 2222222221
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
..... ....+.+++++.|+.|++|.-
T Consensus 366 ~~~~~---------------~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 366 RSGMG---------------ADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp SBSTT---------------CTTSCEEEEEETTTEEEEEEE
T ss_pred eeccc---------------cCCCCEEEEEEcCCeEEEEeC
Confidence 11110 012446888899999999973
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=7.6e-27 Score=266.99 Aligned_cols=365 Identities=8% Similarity=-0.011 Sum_probs=242.4
Q ss_pred EEEeCCCCcE-EEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 350 MDFHPSHQTL-LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 350 v~fspdg~~l-la~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
..+++|.+.+ +++++.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.|+
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~ 83 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDA 83 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCC
Confidence 3456665544 57788899999999999998754 4445 4589999999999999999999
Q ss_pred eEEEEEccCCCcce--eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCC
Q 001190 429 LIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~ 505 (1128)
+|++||+.+++... .+....+|.+.+.+++|+|||++ +++++..++++++|| .++.++..+.+|...+..+.+.+.
T Consensus 84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (426)
T d1hzua2 84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162 (426)
T ss_dssp EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence 99999999987543 22234578888889999999995 456677899999999 889999888888777666665443
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1128)
+. ...++.+.|+...+| ... +.+.+.+++...+...........
T Consensus 163 ~~-~~~i~~s~d~~~~~~--------------------------------~~~---~~~~i~~~~~~~~~~~~~~~~~~~ 206 (426)
T d1hzua2 163 PR-VAAIIASHEHPEFIV--------------------------------NVK---ETGKVLLVNYKDIDNLTVTSIGAA 206 (426)
T ss_dssp CC-EEEEEECSSSSEEEE--------------------------------EET---TTTEEEEEECSSSSSCEEEEEECC
T ss_pred Cc-eeEEEECCCCCEEEE--------------------------------ecC---CCCeEEEEEeccccceeeEEeccC
Confidence 22 233344444443333 221 234455555544433222111222
Q ss_pred CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE-EE--EEEcCCcEEEEEcccC
Q 001190 586 KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LA--VTTADNGFKILANAIG 661 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~--~~~~dg~i~iw~~~~~ 661 (1128)
..+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.++.+.+|+....
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 3677899999999988876 567799999999999888765544333334443332221 11 1122444444432221
Q ss_pred ccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcc
Q 001190 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1128)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (1128)
.+.+|
T Consensus 287 ---------------------------------------------------------------------------~~~~~ 291 (426)
T d1hzua2 287 ---------------------------------------------------------------------------NHPQY 291 (426)
T ss_dssp ---------------------------------------------------------------------------TCTTT
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00000
Q ss_pred eeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccc
Q 001190 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1128)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1128)
+ ++..
T Consensus 292 ~---------------------------------------------------------------------------~~~~ 296 (426)
T d1hzua2 292 A---------------------------------------------------------------------------WKKV 296 (426)
T ss_dssp B---------------------------------------------------------------------------TSEE
T ss_pred c---------------------------------------------------------------------------ceEe
Confidence 0 0000
Q ss_pred cccccCCCCCCCeeEEEeccCCCeEEE-------Ee-CCeEEEEECCCceEEEEe---------eCCCCCeeEEEEcCCC
Q 001190 822 ANDVAGVNLEEAVPCIALSKNDSYVMS-------AT-GGKISLFNMMTFKVMTTF---------MSPPPASTFLAFHPQD 884 (1128)
Q Consensus 822 ~~~~~~~~~~~~v~~~~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~---------~~~~~~v~~l~~s~~d 884 (1128)
..+.+ |...+..++|+|||++|++ +. +++|+|||+.+++...++ ..|...|.+++||| |
T Consensus 297 -~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-D 372 (426)
T d1hzua2 297 -AELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-R 372 (426)
T ss_dssp -EEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-S
T ss_pred -EEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-C
Confidence 01112 6677888888888888885 23 678999999998876554 24566799999999 8
Q ss_pred CCEE-EEE----eCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEE
Q 001190 885 NNII-AIG----TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILV 931 (1128)
Q Consensus 885 ~~~l-asg----~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 931 (1128)
|+++ +++ +.+|.|+|||..+++....+.++. .++|+|++-+
T Consensus 373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred CCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 8766 333 368889999999999988888764 3467777643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.9e-26 Score=247.18 Aligned_cols=267 Identities=10% Similarity=0.125 Sum_probs=208.2
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
++++++. |..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 3455565 999999999987 699999999999998654 3459999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
++++ .+++++.|++|++|++...+ ....+..+++.+++. .+++++ ++.+.+|+ .+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeecccc
Confidence 9765 57899999999999986532 233577889999987 555555 66788888 888888777644
Q ss_pred CCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeec-CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
..+.+++. ++..+++++.+ +.+++|++........+. .+...+++++|+|++.+|++++. ++.|++||+
T Consensus 121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 44555443 33566666665 579999987655555443 35568999999999999999884 889999999
Q ss_pred CCCceeeE-eccccCCceeEEEEeCC----------CCEEEEEECCCcEEEEECCC-CeeeEEEecCCCCCCcceEEEcC
Q 001190 572 SEGTIKRT-YAGFRKKSNGVVQFDTT----------QNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 572 ~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.+++.... +.+|.. .+.+++|+|. +.++++|+.|+.|++||+++ ++.+..+. +|...|.+++|+|
T Consensus 192 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~--~h~~~V~~v~~~~ 268 (287)
T d1pgua2 192 QSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWET 268 (287)
T ss_dssp TTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEE
T ss_pred ccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC--CCCCCeEEEEECC
Confidence 99887654 455555 7999999864 46899999999999999977 44555444 4455899999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001190 640 EGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~ 658 (1128)
++ .+++++.|+.|++|++
T Consensus 269 ~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 269 PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TT-EEEEEETTSCEEEEEE
T ss_pred CC-EEEEEECCCeEEEEEE
Confidence 86 6889999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.7e-26 Score=255.40 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=207.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~ 420 (1128)
+|++.|++++|||+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+|+ +.+
T Consensus 9 ~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEeCCCCCE
Confidence 4999999999999998 789999999999999987654321 1124469999999999996 458
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE----EEecCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~----~~~~~h~~ 495 (1128)
|++|+.||.|++|++..+...... ...+........+.+++. .+++++.|+++++|| ..+... .....+..
T Consensus 72 l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeecccccccc
Confidence 999999999999999987765532 223334445555666677 799999999999999 433322 22222322
Q ss_pred --CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEc-CCCCeEEEeeeccCCCceEEEE
Q 001190 496 --PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 496 --~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
......+.+ ++..+++++.|+.|++|++........ .......+.+..+. .++..+++++ .++.+.+|
T Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS----IDGRVAVE 221 (342)
T ss_dssp SSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE----TTSEEEEE
T ss_pred cceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec----CCCeEEEE
Confidence 223333333 557899999999999999977655432 23333445555554 4566777776 48899999
Q ss_pred eCCCCceee------Ee---------ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 570 NESEGTIKR------TY---------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 570 d~~~~~~~~------~~---------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+........ .+ .+|. ..+.+++|+|++++|++|+.||.|++||+++++.+..+.... .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~ 297 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSV 297 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEE
T ss_pred EecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEE
Confidence 876543211 11 1222 257889999999999999999999999999999888775332 4567
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++|+|+++++++++.|+.+++|..
T Consensus 298 ~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 298 VKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCSS
T ss_pred EEEEeCCCEEEEEEcCCcEEEeee
Confidence 889999999999999988877743
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-25 Score=253.92 Aligned_cols=283 Identities=9% Similarity=0.057 Sum_probs=203.4
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcce---eceeecccccceeEEEEe---c-CC-CeEEEEEe
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFA---Y-PN-KLLCVVTC 471 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~fs---~-d~-~~~~l~s~ 471 (1128)
...++|.+.|.++++++ ++|++|+.|++|+|||..+.+... .......|...+..+.+. + ++ ...+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 34788999999999875 699999999999999987765321 111222444444333321 1 11 11268899
Q ss_pred cCCCeEEEEe-cCCCeEEE-----e-----cCCCCCeEEEeccCCC---CccEEEEEeccCcEEEEecCCCCce------
Q 001190 472 GDDKLIKVWE-LSGRKLFN-----F-----EGHEAPVYSICPHHKE---NIQFIFSTAIDGKIKAWLYDTMGSR------ 531 (1128)
Q Consensus 472 s~d~~i~vWd-~~g~~~~~-----~-----~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~------ 531 (1128)
+.||.|++|+ ..+..... . ..+...+..+++.+.. .+.++++++.||.+++|++......
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999999 43322111 1 1244557777776543 2578999999999999998532211
Q ss_pred ------------eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec------cccCCceeEEEE
Q 001190 532 ------------VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQF 593 (1128)
Q Consensus 532 ------------~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~ 593 (1128)
.....+...+.+++|+|++ ++++++ .|+.|++||+.+++.+..+. +|.. .|.+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs----~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~ 239 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----NNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKF 239 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----TTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEE
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEe----CCCcEEEEeecccccccccccccccccccc-eEEEccc
Confidence 0112234468899999998 777776 49999999999998876654 4554 8999999
Q ss_pred eCCCCEEEEEECCC---cEEEEECCCCeeeEEEec-----------CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 594 DTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDA-----------EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 594 ~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|++++|++|+.|+ .|++||+++++.+..+.. .+|...|++++|+|++++|++++.|++|++||+.
T Consensus 240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 99999999999887 499999999988887643 2456689999999999999999999999999999
Q ss_pred cCccccccccCCccccccCcceeeeeecccccc
Q 001190 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1128)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 692 (1128)
++ +.+..+.+|...+. .....++|++++..+
T Consensus 320 ~g-~~~~~l~gH~~~v~-~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 320 TK-ERITTLNMHCDDIE-IEEDILAVDEHGDSL 350 (393)
T ss_dssp TT-EEEEEEECCGGGCS-SGGGCCCBCTTSCBC
T ss_pred CC-CEEEEECCcCCccc-CCccEEEECCCCCEE
Confidence 98 66777777765432 122345666666554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.2e-26 Score=243.58 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=180.3
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+.+.||..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|++++. +++++.|++|++
T Consensus 7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~ 71 (287)
T d1pgua2 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKV 71 (287)
T ss_dssp EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEE
T ss_pred EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeecccccc
Confidence 35899999999999998 999999999999998763 348999999999998764 799999999999
Q ss_pred EecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 480 Wd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
|+.... .....+..+++++ ++..+ ..+.++.+.+|+.........+..... ..++++++..+++++.
T Consensus 72 w~~~~~------~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~- 138 (287)
T d1pgua2 72 NGITKH------EFGSQPKVASANN--DGFTA-VLTNDDDLLILQSFTGDIIKSVRLNSP---GSAVSLSQNYVAVGLE- 138 (287)
T ss_dssp TTEEEE------ECSSCEEEEEECS--SSEEE-EEETTSEEEEEETTTCCEEEEEECSSC---EEEEEECSSEEEEEET-
T ss_pred cccccc------ccccceeeeeecc--CCceE-EEeecccceeeeccceeeeeeccccce---eeeeeccCcceeeecc-
Confidence 992211 1234466677654 44444 455667788898887777666654432 3456778888888774
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.++.+++|++...+....+.......+.+++|+|++.+|++|+.||.|++||+.+++..... ...|...|.+++|+|
T Consensus 139 --~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 139 --EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKP 215 (287)
T ss_dssp --TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECC
T ss_pred --ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccccccccceeeecc
Confidence 34579999998887777776655558999999999999999999999999999998865542 224455899999987
Q ss_pred C----------CCEEEEEEcCCcEEEEEcccC
Q 001190 640 E----------GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 640 ~----------~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+ +.++++|+.|+.|++|++.++
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred cccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence 4 468999999999999998654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.3e-25 Score=238.09 Aligned_cols=234 Identities=16% Similarity=0.253 Sum_probs=188.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+|...|+|++ +||++||+|+.||+|+|||++++++++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 567889999865 589999999999999999999998776 58899999999987 567 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee---eecCCCCeEEEEEEcCCCCeEEEee
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
..+........+......... ....++++..++.+++|+........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 777777777666655554432 33579999999999999988765433 4455666777777654 4566665
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
.++.+++||..+++.+..+.++.. .+..+.+ ++.++++++.||.|++||+.+...+.....+.. .+ ..+
T Consensus 156 ----~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 ----GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp ----TTSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred ----CCCceeeecCCCCcEEEEEccccc-ccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 489999999999999999988876 5655555 467999999999999999999998888765433 34 346
Q ss_pred cCCCCEEEEEEcCCcEEEEEcccC
Q 001190 638 SKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++++.+|++++.||.|++||+...
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 678899999999999999998764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=7.9e-26 Score=249.96 Aligned_cols=254 Identities=11% Similarity=-0.015 Sum_probs=188.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
++.+|+..|++|+|||+|++||+|+.||+|+|||++++..........+|.++|.+++|+|++.. +|++|+.|++|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 47889999999999999999999999999999999987665544445579999999999998654 79999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec----C--CCCeEEEEEEcCCCCeE
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----A--PGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----~--~~~~i~~~~~s~~g~~l 553 (1128)
+ ..+........+...+....+.. .+...+++++.++.+++||++......... . .......+.+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9 66666666655554443333222 245789999999999999986544433221 1 12244566777888888
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEec---cccCCceeEE-EEeCCCCEEEEEECCCcEEEEECCCCeeeE------EE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILT------ST 623 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~-~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~------~~ 623 (1128)
++++. ++.|++||+...+...... .... ...+. .+..++..+++++.||.+.+|+........ ..
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 88874 8999999998766443322 2222 33333 445567889999999999999986543211 11
Q ss_pred -------ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 -------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 -------~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
....+...|++++|+|++++|++|+.||.|++||+.++
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 11234446789999999999999999999999999876
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.2e-27 Score=260.75 Aligned_cols=191 Identities=16% Similarity=0.153 Sum_probs=157.7
Q ss_pred EEEEeC-CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 349 SMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 349 ~v~fsp-dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
+-.||| ||+ ++|+++ +|.|.|||+.++..+. .+|...|.+++|||||++|++++.+
T Consensus 7 ~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 7 AEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred cccccCCCCC-EEEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence 467999 999 567664 6899999998876542 2589999999999999999987755
Q ss_pred C--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 428 H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 428 ~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
. .|++||.++++..+ +..|...|.+++|+|||+ +|++++.++.+++|+ .+++....+..|...+.+++|++
T Consensus 64 ~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 64 EGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137 (360)
T ss_dssp TEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred CCCEEEEEECCCCcEEE----eeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc
Confidence 3 79999999986543 678999999999999999 899999999999999 88888888999999999999977
Q ss_pred CCCccEEEEEe----------ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 505 KENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 505 ~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+|++|+.+. .++.+++|++..+.. ..+..+...+..++|+|||++|++++. ++.+.+|+....
T Consensus 138 --dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~~ 210 (360)
T d1k32a3 138 --NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVVL 210 (360)
T ss_dssp --TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSSS
T ss_pred --ceeeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeC----CCceEccccccc
Confidence 667887544 445799999976544 444556677899999999999999874 778899987654
Q ss_pred c
Q 001190 575 T 575 (1128)
Q Consensus 575 ~ 575 (1128)
.
T Consensus 211 ~ 211 (360)
T d1k32a3 211 N 211 (360)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.1e-26 Score=257.37 Aligned_cols=196 Identities=13% Similarity=0.052 Sum_probs=162.0
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC--CeEEEEecCCCeE
Q 001190 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWELSGRKL 487 (1128)
Q Consensus 411 ~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d--~~i~vWd~~g~~~ 487 (1128)
.-.||| ||+++|+++ +|.|++||++++...+ + +|...|++++|+|||+ +|++++.+ ..|++||..+..+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE
Confidence 356999 999999987 4789999999876543 2 6999999999999999 55554433 3799999556666
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec------cC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KD 561 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~------~~ 561 (1128)
..+..|...|.+++|+| ++++|++++.++.+++|++........+..+...+.+++|+|||++|+.+... ..
T Consensus 79 ~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EEeeCCCceEEeeeecc--cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 78889999999999977 77899999999999999999998888888888899999999999999876532 12
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
.++.+++||..+++........ . .+..++|+|+|++|++++.++.+.+|+.....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CEEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred cccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 4567999999988765554433 2 57788999999999999999999999976543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=2.9e-24 Score=244.26 Aligned_cols=355 Identities=12% Similarity=0.003 Sum_probs=249.6
Q ss_pred CCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee--c---
Q 001190 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--D--- 535 (1128)
Q Consensus 462 d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~--- 535 (1128)
+...+++++.+.||+|.||| .+++++..+..+. .+..++|+| ||+++++++.||.|++||+.+.+..... .
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 33444789999999999999 9999999998774 589999977 7899999999999999999887654332 2
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC----------CceeEEEEeCCCCEEEE-EE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----------KSNGVVQFDTTQNHFLA-VG 604 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~-~s 604 (1128)
.+.+.+.+..|+|||++|++.+. .++.+++||..+++.+..+..+.. .....+.+++++..++. ..
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCeEEecccCCCCCEEEEEcC---CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence 22334556677889998765443 488999999999999888765432 23456788999987655 55
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
.++.|.+|+..+++.......... ..+..++|+|+|+++++++. ++.+.+++..+... ......
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~------------- 247 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDT------------- 247 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEEC-------------
T ss_pred cCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccceE-EEEecc-------------
Confidence 789999999988775544332222 25689999999998888876 45788888766522 111110
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
+.. ..|
T Consensus 248 -----g~~---------------------------------------------------------------------~~~ 253 (432)
T d1qksa2 248 -----GGQ---------------------------------------------------------------------TPH 253 (432)
T ss_dssp -----SSS---------------------------------------------------------------------SBC
T ss_pred -----Ccc---------------------------------------------------------------------ccc
Confidence 000 001
Q ss_pred cccEEEEEEecCcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
........+...+....+.. .++.+.+|..... . .. .+...+....++++
T Consensus 254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~----------------------~-----~~--~~~~~v~~~~~~~~ 304 (432)
T d1qksa2 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----------------------G-----HP--DNAWKILDSFPALG 304 (432)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT----------------------T-----CT--TTBTSEEEEEECSC
T ss_pred cCcccceecCCCCceecccccCCceEEecccccc----------------------c-----cc--ccccEEEEEEEcCC
Confidence 11222233333333333332 2667777753211 0 11 15667889999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
+..+++++ ++..++|+..+.. .|.....++++ | |++.+++++.|+.+++|++.++. .+..|..+|.++
T Consensus 305 g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~ 373 (432)
T d1qksa2 305 GGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQG 373 (432)
T ss_dssp SCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEE
T ss_pred CCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEeccccccc---ccCCCCCcEEEe
Confidence 99888887 8889999876543 23333445665 7 89999999999999999987764 334677889999
Q ss_pred EEcCCCCEEEEEc-----CCCcEEEEECCCCcccc
Q 001190 922 AFSTSLNILVSSG-----ADAQLCVWSIDTWEKRK 951 (1128)
Q Consensus 922 ~~s~d~~~l~s~~-----~Dg~i~iwd~~~~~~~~ 951 (1128)
+|||||++++... .++.|+|||..+++...
T Consensus 374 ~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 374 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408 (432)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence 9999999875543 46889999999987643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.2e-23 Score=235.61 Aligned_cols=348 Identities=11% Similarity=0.043 Sum_probs=236.5
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
+..+...-++++.+.||+|++||+.+++....+..+. .+..++|||||+++++++ .++.+++||+.+++......
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~----~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEe----CCCCEEEEEccCCceeEEEE
Confidence 3333344466888899999999999999888888764 589999999999999887 38899999999987544332
Q ss_pred -----cccCCceeEEEEeCCCCEEEEE-ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE-EEEEcCCcEE
Q 001190 582 -----GFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFK 654 (1128)
Q Consensus 582 -----~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~ 654 (1128)
+|.. .+..++|+|||++++++ ..++.+.+||..++........+.. .+..+.+.+++... ++++.|+...
T Consensus 101 i~~~~~~~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~ 177 (426)
T d1hzua2 101 IKIGIEARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEF 177 (426)
T ss_dssp EECCSEEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EeCCCCCcc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEE
Confidence 3332 45556778999987665 4899999999999999888876543 56667777776643 4445565555
Q ss_pred EEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCC
Q 001190 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1128)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1128)
++........
T Consensus 178 ~~~~~~~~~i---------------------------------------------------------------------- 187 (426)
T d1hzua2 178 IVNVKETGKV---------------------------------------------------------------------- 187 (426)
T ss_dssp EEEETTTTEE----------------------------------------------------------------------
T ss_pred EEecCCCCeE----------------------------------------------------------------------
Confidence 5433211000
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
.+++ ..++. .+.+.
T Consensus 188 ----~~~~------------------------------~~~~~---------~~~~~----------------------- 201 (426)
T d1hzua2 188 ----LLVN------------------------------YKDID---------NLTVT----------------------- 201 (426)
T ss_dssp ----EEEE------------------------------CSSSS---------SCEEE-----------------------
T ss_pred ----EEEE------------------------------ecccc---------ceeeE-----------------------
Confidence 0000 00000 00000
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCC--CCCeeEEEEcCCCCCEE--
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNII-- 888 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~l-- 888 (1128)
. ..+...+..++|+|++++++++. ++.+.+++..+++.+...... ........+.......+
T Consensus 202 ----------~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 202 ----------S--IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp ----------E--EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ----------E--eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence 0 01455677889999999888876 566889999998887766532 22233343333122222
Q ss_pred EEEeCCCcEEEEeccc-------ceeeecccccccCeeEEEEcCCCCEEEE-------EcCCCcEEEEECCCCcccceeE
Q 001190 889 AIGTEDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVS-------SGADAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 889 asg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~~~Dg~i~iwd~~~~~~~~~~~ 954 (1128)
+..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|||+.+++....+.
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~ 349 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 349 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence 2334577787777654 4677889999999999999999999994 5567889999998876533221
Q ss_pred EeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEE-----ecCC
Q 001190 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-----FCDG 1029 (1128)
Q Consensus 955 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~-----~~dg 1029 (1128)
. +..+.....|...|..++|||||++++++ +.+|
T Consensus 350 ~-----------------------------------------~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~ 388 (426)
T d1hzua2 350 P-----------------------------------------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388 (426)
T ss_dssp C-----------------------------------------HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC
T ss_pred c-----------------------------------------cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCC
Confidence 0 11111222236789999999999987643 3688
Q ss_pred cEEEEecCCCceEEEeC
Q 001190 1030 NIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1030 ~i~vwd~~~~~~~~~~~ 1046 (1128)
.|+|||.+|++++..+.
T Consensus 389 ~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 389 ALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp EEEEEETTTTEEEEEEC
T ss_pred eEEEEECCCCeEEEEEC
Confidence 89999999999998887
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=1.8e-20 Score=202.54 Aligned_cols=268 Identities=10% Similarity=0.055 Sum_probs=210.8
Q ss_pred cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE-EEeCCCeEEEEEcc
Q 001190 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA 436 (1128)
Q Consensus 358 ~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~d~~i~vwd~~ 436 (1128)
++.++++.|++|.|||+.+++.+.. +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4556788999999999999987653 11 234578999999999885 56678999999999
Q ss_pred CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEE-EEE
Q 001190 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 514 (1128)
+++.++ .+..|. .+..++|++++.. +++++..++.+.+|+ .+++....+..+ ....++++++ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 988766 355554 4689999999986 567788889999999 777777777654 4567788876 44554 566
Q ss_pred eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEe
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1128)
..++.+.+|+..+......+..+ ..+..+.++|++..++++.. +...+.+|+....+.......+. ....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeecc
Confidence 67889999999887776666544 35788999999999888764 46778899988888777766553 46678999
Q ss_pred CCCCEEEEEE---CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE-EEEcCCcEEEEEcccCc
Q 001190 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGL 662 (1128)
Q Consensus 595 ~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~~ 662 (1128)
+++..+++++ .++.|++||..+++.+..+.... .+.+++|+|||++|+ +++.++.|++||+.+++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 9999887765 34689999999999988877543 478999999999874 66678999999998873
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=5.2e-21 Score=211.60 Aligned_cols=329 Identities=9% Similarity=-0.016 Sum_probs=220.2
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE-EcCCcEEEEEcccCcccccccc
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVE 669 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~ 669 (1128)
++|+++++++++++.++.|.+||+.+++.+..+..+.. ..+.+++|+|||++++++ ..++.|.+||+.+++.......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999999999998875433 246899999999987555 5689999999988733221111
Q ss_pred CCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeC
Q 001190 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (1128)
Q Consensus 670 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 749 (1128)
......
T Consensus 81 ~~~~~~-------------------------------------------------------------------------- 86 (346)
T d1jmxb_ 81 SSVPGE-------------------------------------------------------------------------- 86 (346)
T ss_dssp CCSTTE--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 100000
Q ss_pred CceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCC
Q 001190 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1128)
Q Consensus 750 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1128)
+...+..++|+|||+++++++.+.....|.... ....+.+|+..++....... ...
T Consensus 87 -------------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~ 142 (346)
T d1jmxb_ 87 -------------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVR-TFP 142 (346)
T ss_dssp -------------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSE-EEE
T ss_pred -------------cCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEE-eee
Confidence 111223466677777666665443332221110 01122334444443322111 111
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecccceee
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~ 908 (1128)
....+..+.+++++++++. ++.+.+|++.+++.+..+..+. ....+.++| ++..+ +.+..++.+.+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----- 213 (346)
T d1jmxb_ 143 MPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI----- 213 (346)
T ss_dssp CCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----
T ss_pred ccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeeee-----
Confidence 3445666778888877664 4568999999999988887543 456677888 55444 444555556555422
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 988 (1128)
..+.+....++++..++.+.+||+.++......... + ...+..+.+++++.+++...++.+.+
T Consensus 214 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~v~v 276 (346)
T d1jmxb_ 214 ------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----L-TELYFTGLRSPKDPNQIYGVLNRLAK 276 (346)
T ss_dssp ------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----C-SSCEEEEEECSSCTTEEEEEESEEEE
T ss_pred ------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----c-cceeEEEEEeCCCCEEEEecCCeEEE
Confidence 122334455666777788999999987754433222 1 15677889999999998888889999
Q ss_pred EecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCC
Q 001190 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
||..+++.+..+.. ...+.+++|||||++|++++.|+.|+|||+++++.+.++..+
T Consensus 277 ~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 277 YDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 99999998887754 457899999999999999999999999999999999998843
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=7.3e-21 Score=209.50 Aligned_cols=316 Identities=10% Similarity=0.023 Sum_probs=217.4
Q ss_pred CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE-EEEcCCcEEEEEcccCccccccccCCccccc
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1128)
+++++++.|++|++||+++++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++ ....+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~~~~~- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEE- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCBTTE-
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecCCCcc-
Confidence 589999999999999999999999998766555678999999999875 55678999999998873 222222111100
Q ss_pred cCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEE
Q 001190 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1128)
Q Consensus 677 ~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (1128)
T Consensus 80 -------------------------------------------------------------------------------- 79 (337)
T d1pbyb_ 80 -------------------------------------------------------------------------------- 79 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
+...+..++|+|++++++++..+.....|..... ...+.+|+..++....... ....+..
T Consensus 80 ------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~----~~~~~~~ 139 (337)
T d1pbyb_ 80 ------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE----APRQITM 139 (337)
T ss_dssp ------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE----CCSSCCC
T ss_pred ------cccceeeEEEcCCCcEEEEeecCCcceeeecccc----------ccceeeccccCCeEEEecc----ccCCceE
Confidence 1122335777788887777776655555543211 1133456666665443222 4556888
Q ss_pred EEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEE-EEeCCCcEEEEecccceeeecccccc
Q 001190 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
++|+|||+++++++ +.+.+||..+++....+..+.. .....+++ ++..+. .+...+...+++
T Consensus 140 ~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------- 202 (337)
T d1pbyb_ 140 LAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------- 202 (337)
T ss_dssp EEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE--------------
T ss_pred EEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee--------------
Confidence 99999999998875 4478899999999888765433 23334455 333222 122222222221
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
.....+......+..++.+.+|++.++......... .......+.+++++.+++.. ++.+++||+.+++
T Consensus 203 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~ 271 (337)
T d1pbyb_ 203 -----YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-----MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNA 271 (337)
T ss_dssp -----EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-----CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTE
T ss_pred -----eeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-----CCcceEEEEecccceEEEEc-cccEEEEECCCCc
Confidence 122223333344555677999999988754332222 11566778999999988765 5899999999999
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+..+.. ...+.+++|+|||++|++++.|+.|+|||+++++.+..+..
T Consensus 272 ~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 272 SIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 9887754 56789999999999999999999999999999999998873
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2.5e-19 Score=193.53 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=204.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
+|+... .++..++.....+..++|||||++++++++.++.|++||+.+++.+.. +..|.
T Consensus 16 v~D~~t--~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~ 74 (301)
T d1l0qa2 16 VIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS 74 (301)
T ss_dssp EEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS
T ss_pred EEECCC--CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc
Confidence 555544 466777777778999999999997777888899999999999887653 33343
Q ss_pred cceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
.+..++|++++.+++++ ..++.+.+|+..+++.... + .+.....+++|+|||.. +++++..++.+.+|+ .++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT---V-KTGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---E-ECSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred -cccccccccccccccccccccceeeecccccceeeee---c-cccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 56899999999977654 5677899999999876652 3 34556889999999996 567788899999999 788
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
..+..+..+. .+..+++++ ++..+++++.+ +.+.+|+........... ....+..+++++++..++.+..+ ..+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 149 AVINTVSVGR-SPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEEECCS-SEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceeeecccCC-CceEEEeec--cccceeeecccccccccccccceeeeeccc-ccCCcceeecccccccccccccc-cee
Confidence 7777776554 477788866 55666666655 566677665544444433 44567889999999998876542 246
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE-EEECCCcEEEEECCCCeeeEEEec
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
+.|.+||..+++.+..+..+. .+..++|+|||++|+ +++.++.|++||+++++.+..+..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999988887654 478899999999875 566899999999999999988864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.7e-20 Score=202.90 Aligned_cols=301 Identities=9% Similarity=0.049 Sum_probs=209.0
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC-
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK- 585 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~- 585 (1128)
.++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 48999999999999999998887777653 456789999999999865543 478999999999999988876543
Q ss_pred ---CceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 586 ---KSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 586 ---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
..+..++|+|+++++++++ .++.+.+||..+++....+.... .+..++|+|||+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 1345689999999998876 46789999999999988887543 4788999999999999864
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
.+.+||..++.. ...+..... .....+.+++..+.
T Consensus 155 -~~~~~d~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~------------------------------------- 189 (337)
T d1pbyb_ 155 -DLHVMDPEAGTL-VEDKPIQSW------EAETYAQPDVLAVW------------------------------------- 189 (337)
T ss_dssp -SEEEEETTTTEE-EEEECSTTT------TTTTBCCCBCCCCC-------------------------------------
T ss_pred -CcceeeeecCcE-EEEeecCCc------cccceecCCcceee-------------------------------------
Confidence 577899877632 222221111 01112222222110
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
.... . .+...........+.........++.+.+|+.
T Consensus 190 ~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 226 (337)
T d1pbyb_ 190 NQHE-S-------------------------SGVMATPFYTARKDIDPADPTAYRTGLLTMDL----------------- 226 (337)
T ss_dssp CCCT-T-------------------------TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET-----------------
T ss_pred cccc-c-------------------------cceeeeeeeeeeeccceeeecccCccEEEEEc-----------------
Confidence 0000 0 00001111112222222233333444555543
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
.++......... +...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++
T Consensus 227 -----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v 296 (337)
T d1pbyb_ 227 -----ETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWL 296 (337)
T ss_dssp -----TTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEE
T ss_pred -----CCCcEEEEEecC--CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEE
Confidence 333332222222 66778889999999988765 5889999999999998886 566789999999 9999999
Q ss_pred EeCCCcEEEEecccceeeeccccc
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGH 914 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h 914 (1128)
++.|++|++||..+++.+.+++..
T Consensus 297 ~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 297 GGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEECG
T ss_pred EeCCCcEEEEECCCCcEEEEEECC
Confidence 999999999999999988877643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=1.1e-19 Score=200.77 Aligned_cols=313 Identities=8% Similarity=-0.054 Sum_probs=214.1
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
+++++++++++.+++|.+||+.+.+...++.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+...
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeeccc
Confidence 34779999999999999999999888777764 3556789999999999876653 4789999999999998877644
Q ss_pred cCC-----ceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 584 RKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 584 ~~~-----~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
... .+..++|+|||+++++++ .++.+.+|+..+++....+........+..+.+++++..++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 321 245689999999998765 477899999988776554433222234667778888876654
Q ss_pred EEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCC
Q 001190 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1128)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1128)
++.+.+|+..++. ....+..+ .....+.++|++..+...
T Consensus 162 ---~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~------------------------------- 200 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGK-YTVALPLR------NWNRKGYSAPDVLYFWPH------------------------------- 200 (346)
T ss_dssp ---SSSEEEECTTTCC-EEEEECST------TCCCTTBCCCBCCCCCCC-------------------------------
T ss_pred ---CCcceEEEccCCC-EEEEEecC------CCccceEEeccccEEEEE-------------------------------
Confidence 3568889887763 22222221 112334455555443211
Q ss_pred CCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceee
Q 001190 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1128)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~ 806 (1128)
...++.+.+++. ...+.+....+.+...++.+.+|++.
T Consensus 201 -----~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 238 (346)
T d1jmxb_ 201 -----QSPRHEFSMLYT-------------------------IARFKDDKQDPATADLLYGYLSVDLK------------ 238 (346)
T ss_dssp -----CCTTCEEEEEEE-------------------------EEEC-------CCCEEEEEEEEEETT------------
T ss_pred -----ecCCCceEeeee-------------------------eeeeccCceeEeeccCCceEEEEECC------------
Confidence 111111111111 11122233334444455666666543
Q ss_pred eeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCC
Q 001190 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1128)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~ 886 (1128)
++......... +...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||+
T Consensus 239 ----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~ 304 (346)
T d1jmxb_ 239 ----------TGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGD 304 (346)
T ss_dssp ----------TCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSS
T ss_pred ----------CCceEEEEeec--ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCC
Confidence 33322222222 6677889999999999998888899999999999988886 455799999999 999
Q ss_pred EEEEEeCCCcEEEEecccceeeecccccccC
Q 001190 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
+|++++.|+.|++||..+++.+.+++.+.+.
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 9999999999999999999999888755443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=3e-17 Score=183.18 Aligned_cols=333 Identities=8% Similarity=-0.021 Sum_probs=218.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEe-----CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEe-----
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----- 471 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~----- 471 (1128)
...+.+++.+++++|||+.++... ..+.|.+||..+++.+.. +..+..+ .++|+|||+ +|+++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~---~~~~~~~--~~a~SpDG~--~l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---VNGGFLP--NPVAAHSGS--EFALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE---EeCCCCc--cEEEcCCCC--EEEEEeecCC
Confidence 445888999999999999987652 345799999999987763 4455443 799999999 45544
Q ss_pred -----cCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 472 -----GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 472 -----s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
..++.|.+|| .+++.+..+..+......+...+ ..+.
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~ 131 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNA 131 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEE
Confidence 3457788888 77777766665554443332211 2346
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE-EEEECCCcEEEEECCCCeeeEEEe
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
|+++++.++....+ .+..+.+|+....+...... ...++.++++++.+ ++.+.|+.+.+|+..++.......
T Consensus 132 ~s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 132 NTPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred EEeCCCcEEEEEEc--CCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 67777776655432 35678889888877655544 34568899998765 567899999999999888776554
Q ss_pred cCC----CCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 625 AEG----GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 625 ~~~----~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
... .......+.+++++.+ +..+.++.+.+|+...........
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~-------------------------------- 251 (373)
T d2madh_ 205 GAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAP-------------------------------- 251 (373)
T ss_pred eeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEe--------------------------------
Confidence 321 1112234455666544 455568888888876542110000
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
|+ .+........+.|.+...+
T Consensus 252 ----------------------------------------~~-------------------~~~~~~~~~~~~~~~~~~~ 272 (373)
T d2madh_ 252 ----------------------------------------ID-------------------ALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred ----------------------------------------ec-------------------cccCcEEeeeeccCcceee
Confidence 00 0111112222233332222
Q ss_pred EeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEEC
Q 001190 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNM 859 (1128)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~ 859 (1128)
+.+.++... ..+.+++..++... ++.+.+||.
T Consensus 273 ~~~~d~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~ 305 (373)
T d2madh_ 273 AYLKSSDGI-----------------------------------------------YLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEecCCCeE-----------------------------------------------EEecCCCceEEeecCCCeEEEEEC
Confidence 222222111 12223444444444 788999999
Q ss_pred CCceEEEEeeCCCCCeeEEEEcCCCCC--EEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCC
Q 001190 860 MTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1128)
Q Consensus 860 ~~~~~~~~~~~~~~~v~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (1128)
.+++.+..+. +...+.+++|+| ||+ ++++++.|++|++||+.+++.++++.+|....+.|++.++
T Consensus 306 ~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 306 LVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 9999988876 566789999999 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=7.4e-17 Score=179.95 Aligned_cols=291 Identities=6% Similarity=-0.052 Sum_probs=200.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEe----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~g----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
.+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++||||
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD 76 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS 76 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence 4778899999999999765542 2346799999999987753 333333 37999999
Q ss_pred CCEEEEEe----------CCCeEEEEEccCCCcceeceeecccccc-------eeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 418 GNYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDAHVGA-------VNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 418 g~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~h~~~-------v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
|++|++++ .++.|.+||..+++.+.. +..+... ...+.|++|++.++++....++.+.+|
T Consensus 77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 99999875 357899999999987653 3333332 256889999997666666777899999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------CCeEEEEEEcCCCCeE
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRL 553 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~i~~~~~s~~g~~l 553 (1128)
+ ..++...... ...++.+++.+. ..+++.+.|+.+.+|+............. ......+.+++++..+
T Consensus 154 ~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T d2madh_ 154 VQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred eccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence 9 6555443333 345677766432 45678899999999998877665543322 1234556666776665
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeE--eccccC---------CceeEEEEeCCCCEEE----------EEECCCcEEEE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRT--YAGFRK---------KSNGVVQFDTTQNHFL----------AVGEDSQIKFW 612 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~--~~~~~~---------~~v~~~~~~~~~~~l~----------~~s~dg~i~iw 612 (1128)
+... ++.+.+|+..+...... ...... .....+++++++..++ ....++.+.+|
T Consensus 229 ~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 229 WPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred EecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 5542 77888888877653322 111111 1223355666655444 44567789999
Q ss_pred ECCCCeeeEEEecCCCCCCcceEEEcCCCCE--EEEEEcCCcEEEEEcccCccccccccC
Q 001190 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNL--LAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
|..+++.+..+.... .+..++|+|||+. +++++.|+.|++||+.+++ ..+.+..
T Consensus 304 d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~~~~ 359 (373)
T d2madh_ 304 TGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQSTVE 359 (373)
T ss_pred ECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEECC
Confidence 999999988876432 5789999999984 4678889999999999984 4455443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.6e-16 Score=172.27 Aligned_cols=278 Identities=13% Similarity=0.157 Sum_probs=186.6
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~ 437 (1128)
++++++.|++|+||+++....+.. .....|.+.|..|+|||||++|++++ .|+.|++|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~-----------------~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTL-----------------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE-----------------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCcEEEEEEcCCCCeEE-----------------EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 567888999999999976543321 01335788999999999999996655 589999999987
Q ss_pred CCcceeceeecccccceeEEEEecCCCeEEEEEec-CCCeEEEEe-cCCCeE--EEecCCCCCeEEEeccCCCCccEEEE
Q 001190 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFS 513 (1128)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~~i~vWd-~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s 513 (1128)
............+...+..++|+|||+. |++++ .++.|.+|+ ...... .....+...+.++.+++ +++++++
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~--l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEEE
T ss_pred CCCcEEEeeecccCCCceEEEEcCCCCE--EeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeeec
Confidence 6544332222344566888999999994 55554 578999998 444333 33445666788888876 5566666
Q ss_pred Ee-ccCcEEEEecCCCCceee------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce----eeEecc
Q 001190 514 TA-IDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI----KRTYAG 582 (1128)
Q Consensus 514 ~~-~dg~i~~wd~~~~~~~~~------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~ 582 (1128)
++ .+..|.+|+......... ....+.....++|++++..++.... ..+...+|+...... ......
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeeee
Confidence 65 456799998876554332 2234456789999999998877653 355677777654321 111111
Q ss_pred c-----cCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEE-ecCCCCCCcceEEEcCCCCEEEEEEc-CCcEE
Q 001190 583 F-----RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFK 654 (1128)
Q Consensus 583 ~-----~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~ 654 (1128)
. .......+++++++++++... .++.+.+|++......... ........+..++|+|||++|++++. ++.|.
T Consensus 222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~ 301 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS 301 (333)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence 1 112345678999999877765 6788999988765332222 11111224678999999999887754 68899
Q ss_pred EEEccc
Q 001190 655 ILANAI 660 (1128)
Q Consensus 655 iw~~~~ 660 (1128)
+|+++.
T Consensus 302 v~~id~ 307 (333)
T d1ri6a_ 302 VYEIVG 307 (333)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 996643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=6.7e-17 Score=178.86 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=192.2
Q ss_pred cEEEEEEeCCCCcEEEEe----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 346 TVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~g----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
++.-.+.+|||++++++. ..++.|.+||..+++.+.. +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 344456799999765553 3456799999999987653 2223 34479999999999
Q ss_pred EEEe----------CCCeEEEEEccCCCcceeceeeccc----ccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe
Q 001190 422 GVAF----------TKHLIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 422 as~~----------~d~~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
++.+ .|+.|++||..+++.+........+ ......++|++||+.++++..+.+..+.+|| .+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8653 4788999999999877643322222 2234678999999975555667788999999 88888
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec------CCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD------APGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+..+..+...... . . .....++.+.|+...++............ .+...+....+++++..++.+.
T Consensus 142 ~~~~~~~~~~~~~-~---~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (355)
T d2bbkh_ 142 KRMLDVPDCYHIF-P---T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT--- 213 (355)
T ss_dssp EEEEECCSEEEEE-E---E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB---
T ss_pred eeEEecCCcceEe-e---c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEec---
Confidence 8777655432211 1 1 11234444555555555443333222211 1222344566778888888776
Q ss_pred CCCceEEEEeCCCCceee--Eecccc---------CCceeEEEEeCCCCEEEEEECC----------CcEEEEECCCCee
Q 001190 561 DGDSFLVEWNESEGTIKR--TYAGFR---------KKSNGVVQFDTTQNHFLAVGED----------SQIKFWDMDNVNI 619 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~--~~~~~~---------~~~v~~~~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~ 619 (1128)
.++.+++|+...++... ....+. ......+++++++..++....+ ..|.+||..+++.
T Consensus 214 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 214 -YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp -TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred -CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 48899999998875422 222111 0123458899999988876543 4699999999998
Q ss_pred eEEEecCCCCCCcceEEEcCCCC--EEEEEEcCCcEEEEEcccCccccccccC
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
+..+.... .+.+++|+|||+ +++++..|+.|++||..++ +.++.+..
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~ 341 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 341 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeC
Confidence 88876533 478999999997 3456667999999999998 44444443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.7e-16 Score=170.12 Aligned_cols=292 Identities=10% Similarity=0.088 Sum_probs=191.7
Q ss_pred EEEEEeccCcEEEEecCCCCcee--eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc--cC
Q 001190 510 FIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF--RK 585 (1128)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~ 585 (1128)
.+++++.|++|++|+++..+... ....+...+..++|+|||++|++++. .++.|++|++.......++..+ ..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45778899999999998665433 23356678999999999999977664 5889999999876544333222 22
Q ss_pred CceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcccCcc
Q 001190 586 KSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~ 663 (1128)
..+..++|+|||++|++++. ++.|.+|+..............+...+.++.++|+++++++++. +..|.+|+......
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 24667999999999999884 77899999888776655554444456889999999999888875 45688888755421
Q ss_pred ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001190 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (1128)
.......
T Consensus 163 ~~~~~~~------------------------------------------------------------------------- 169 (333)
T d1ri6a_ 163 LVAQDPA------------------------------------------------------------------------- 169 (333)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred ceeeece-------------------------------------------------------------------------
Confidence 1100000
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
... .........++|++++..++.... .+...+|++...... ...... +...
T Consensus 170 ----------~~~----~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~--~~~~------- 222 (333)
T d1ri6a_ 170 ----------EVT----TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN----IECVQT--LDMM------- 222 (333)
T ss_dssp ----------EEE----CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC----CEEEEE--EECS-------
T ss_pred ----------eee----eecCCCccEEEEeccceeEEeeccccCceEEEeecccccc----eeeeee--eeee-------
Confidence 000 012334567888888887766554 566777765432110 000000 0000
Q ss_pred ccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEE---eeCCCCCeeEEEEcCCCCCEEEEEe-CCCc
Q 001190 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNIIAIGT-EDST 896 (1128)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~lasg~-~dg~ 896 (1128)
............+++++|+++++... ++.+.+|++........ .......+..++|+| ||++|++++ .++.
T Consensus 223 --~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~ 299 (333)
T d1ri6a_ 223 --PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHH 299 (333)
T ss_dssp --CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCE
T ss_pred --ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCe
Confidence 00111345567889999999887775 67899998875533322 223445678999999 888776654 5689
Q ss_pred EEEEec--cccee
Q 001190 897 IHIYNV--RVDEV 907 (1128)
Q Consensus 897 v~iwd~--~~~~~ 907 (1128)
|.+|++ .+|++
T Consensus 300 v~v~~id~~tG~l 312 (333)
T d1ri6a_ 300 ISVYEIVGEQGLL 312 (333)
T ss_dssp EEEEEEETTTTEE
T ss_pred EEEEEEECCCCcE
Confidence 999955 56654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.1e-16 Score=171.67 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=129.4
Q ss_pred ceeEEEEecCCCeEEEEEe----cCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEE----------ecc
Q 001190 453 AVNDLAFAYPNKLLCVVTC----GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AID 517 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~----s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~d 517 (1128)
++.-.+.+|||+++ +++. ..+..|.+|| .+|+.+.++..+..+ .++|+| ||++|++. +.|
T Consensus 3 p~~~~a~spdg~~~-~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVAD--DGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT--TSSCEEEEEEEEEETTEEEEE
T ss_pred CcEeEeeCCCCCEE-EEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcC--CCCEEEEEeCCCccccccCCC
Confidence 34445678999963 2332 3466899999 899999888766554 688876 66777764 347
Q ss_pred CcEEEEecCCCCceeeecCCCC-------eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeE
Q 001190 518 GKIKAWLYDTMGSRVDYDAPGH-------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~-------~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
+.|++||+.+.+....+..+.. ....++|+++|++++.... ..+..+.+|+..+++.+..+..+....
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF--SPAPAVGVVDLEGKAFKRMLDVPDCYH--- 152 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC--SSSCEEEEEETTTTEEEEEEECCSEEE---
T ss_pred CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC--CCCceeeeeecCCCcEeeEEecCCcce---
Confidence 8999999998887765543322 2356789999999887653 246789999999999888876543211
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec----CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+.......+..+.||...++............. ..+...+....+.+++..++.++.++.+++|++..+
T Consensus 153 -~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 153 -IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp -EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred -EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 1111122333444444444444333222222111 122224566788888899999999999999998765
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=8.1e-14 Score=160.13 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=146.3
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC--
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-- 426 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 426 (1128)
.+.|.+|+. ++.. .|+.|.+||+.+++.... +....+..|...|.++.|||||++||.++.
T Consensus 21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 467889998 5554 578999999999986431 011236678889999999999999998854
Q ss_pred -------CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC----
Q 001190 427 -------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE---- 494 (1128)
Q Consensus 427 -------d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~---- 494 (1128)
++.+.|||+++++.. .+..|...+..+.|||||+ .+|.. .++.+.+|+ ..|...+....+.
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 467899999998643 3778999999999999999 56654 478999999 6676654443221
Q ss_pred --------------CCeEEEeccCCCCccEEEEEeccCc-EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 495 --------------APVYSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 495 --------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+....+.|+| ||+.|+....|.+ +..|.+...... .........+.+...|...
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~------ 225 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAVN------ 225 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSCC------
T ss_pred cccccceeeeeeecCCccccEECC--CCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeeccccccccC------
Confidence 2234456765 7788988876644 555543211100 0011122223332222211
Q ss_pred cCCCceEEEEeCCCCceeeEeccc----------cCCceeEEEEeCCCCEEEEEE-CCC-----cEEEEECCCCeee
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFLAVG-EDS-----QIKFWDMDNVNIL 620 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s-~dg-----~i~iwd~~~~~~~ 620 (1128)
.+..+.+|++..+........+ .+..+..+.|.+++..++... ..+ .+..+|..++...
T Consensus 226 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~ 300 (470)
T d2bgra1 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (470)
T ss_dssp --CEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred --CcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEE
Confidence 2446788888776644332211 112345677888876555432 222 2344455666543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=7.9e-14 Score=154.42 Aligned_cols=283 Identities=6% Similarity=-0.087 Sum_probs=185.4
Q ss_pred CCCcEEEEEEeCCCCcEEEE--eeccCe--EEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLV--GSSNGE--ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~--gs~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
+.+....++..+||+...++ .+.++. |.+||..+++.+.. ..++..+ .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 44556667778898853333 444554 66668888877642 3334333 58999999
Q ss_pred CEEEEEe----------CCCeEEEEEccCCCcceeceeecc-----cccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 419 NYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 419 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~-----h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
++|++.+ .|+.|.+||..+++.+.... +.. .......++|+|||++ ++++...++.+.+|| .
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence 9999865 36789999999988766431 111 1123457999999995 334445689999999 8
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec------CCCCeEEEEEEcCCCCeEEEe
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD------APGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
+++.+..+..+...... +. ....++..+.||.+.+|++.......... .+...+....+.+++..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~----~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 155 GASDDQLTKSASCFHIH----PG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp TTEEEEEEECSSCCCCE----EE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCcEeEEeeccCcceEc----cC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 88888887765543221 12 22467777888998888876655443322 223344567777887766654
Q ss_pred eeccCCCceEEEEeCCCCceeeEec--ccc---------CCceeEEEEeCCCCEEEEEECC---------CcEEEEECCC
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYA--GFR---------KKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDN 616 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~--~~~---------~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~ 616 (1128)
.+.+++++...+....... ... ......+++++++..++....+ ..|.+||..+
T Consensus 230 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 230 ------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp ------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred ------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 3445666665544332211 110 0123457889999887765422 3599999999
Q ss_pred CeeeEEEecCCCCCCcceEEEcCCCC-E-EEEEEcCCcEEEEEcccCc
Q 001190 617 VNILTSTDAEGGLPNLPRLRFSKEGN-L-LAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~~~-~-l~~~~~dg~i~iw~~~~~~ 662 (1128)
++.+..+.... .+..++|+|||+ + ++++..++.|++||..+++
T Consensus 304 ~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 304 GQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp CCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 99888776432 578999999997 3 4556678999999999984
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=5.4e-14 Score=155.79 Aligned_cols=288 Identities=9% Similarity=-0.004 Sum_probs=181.7
Q ss_pred ccEEEEEEecCcceEE--E-eeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 765 SKVVRLLYTNSAVGLL--A-LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~--~-~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+....++..++++... . ...+|...+| ++|..+++.+..... +. ...++|+|
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~--------------------~~d~~~~~~~~~~~~---~~--~~~~a~sp 74 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENW--------------------VSCAGCGVTLGHSLG---AF--LSLAVAGH 74 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEE--------------------EEETTTTEEEEEEEE---CT--TCEEEECT
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEE--------------------EEeCCCCcEEEEEeC---CC--CCcceECC
Confidence 3344445667776532 2 3345666666 335555554442221 22 23589999
Q ss_pred CCCeEEEEe-----------CCeEEEEECCCceEEEEeeCCCC-------CeeEEEEcCCCCCEEEEEe-CCCcEEEEec
Q 001190 842 NDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT-EDSTIHIYNV 902 (1128)
Q Consensus 842 dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~lasg~-~dg~v~iwd~ 902 (1128)
||+.|++++ ++.|.+||..+++.+..+..+.. ....++|+| ||++|+++. .++.+.+||+
T Consensus 75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEE
T ss_pred CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEEC
Confidence 999998764 35699999999999888765432 234699999 888887665 6799999999
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
.+++.+..+..+..... +......++..+.||.+.+|++........................+.+.+++..+.. .
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~ 229 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-V 229 (368)
T ss_dssp TTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-B
T ss_pred CCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-c
Confidence 99998888766544321 1122345666777888888887765443322222111111234456777777765543 3
Q ss_pred cCeEEEEecCCcccccccc--cCC-------CCCCCeEEEEEeeCCCEEEEEecCC---------cEEEEecCCCceEEE
Q 001190 983 ETQLAIYDASKMERIRQWT--PQD-------ALSAPISCAVYSCNSQLVFATFCDG---------NIGVFDADTLRLRCY 1044 (1128)
Q Consensus 983 d~~i~v~d~~~~~~~~~~~--~~~-------~h~~~v~~l~~s~dg~~l~t~~~dg---------~i~vwd~~~~~~~~~ 1044 (1128)
++.+.+++...+....... ... ........+++++++..+++...++ .|.+||..+++.+..
T Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 309 (368)
T d1mdah_ 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence 4556666655443321111 000 0022334688999999877654332 599999999998776
Q ss_pred eCCCCCCCCcccCCCCccceEEEEEecCCCC--EEEEEECCCcEEEEcCCCCCC
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN--QFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+. ....+.+++|+| |++ +++++..|++|++||..+++.
T Consensus 310 ~~-------------~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 310 IS-------------NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CE-------------EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ec-------------CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 65 223567899999 565 457778899999999999874
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=1.7e-12 Score=148.95 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=89.9
Q ss_pred eEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec-----CCCCCeEEEeccCCCCccEEEEEec---------cCc
Q 001190 455 NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAI---------DGK 519 (1128)
Q Consensus 455 ~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~---------dg~ 519 (1128)
..+.|.+|++ +++. .|+.+.+|| .+|+....+. .|...|.++.|+| ||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCce
Confidence 3578999998 5553 478899999 8887765443 4557899999977 7788888753 567
Q ss_pred EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
+.+||+.++. ...+..+...+..+.|||||+.++... +..+++|+..+++..+...
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITW 149 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCS
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeee
Confidence 8899998765 455677777899999999999999975 7789999999887665443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.50 E-value=3.9e-14 Score=153.99 Aligned_cols=331 Identities=11% Similarity=0.019 Sum_probs=199.2
Q ss_pred eEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEE
Q 001190 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (1128)
Q Consensus 465 ~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 543 (1128)
++.++|++.+|.|++|| .+++.++++.- |++.+ .. ..|..+.+.+++. .......-..|......
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~--~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~ 76 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDS--AT-GWGITNESKEILG--GDQQYLNGDCHHPHISM 76 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCT--TT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCC--CE-EEEECCccceEEe--cccccccCcccCCCcce
Confidence 34789999999999999 88998887742 44432 11 1122222222211 11111112233344555
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC--EEEEEECCC--------------
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDS-------------- 607 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~dg-------------- 607 (1128)
..++|||++|++... .+.+|.++|+.+++....+.-........++|+|+++ +++..+++.
T Consensus 77 t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~ 153 (441)
T d1qnia2 77 TDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN 153 (441)
T ss_dssp ETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred ecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence 667899999988764 5889999999999988877654444688899999998 444444332
Q ss_pred ---cEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc-EEEEEcccCccccccccCCccccccCcceee
Q 001190 608 ---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 608 ---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
.+..+|..+.+....+...+ ....+.++|+|+++++++.+.. +..++..+... ..
T Consensus 154 ~~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~-~d----------------- 212 (441)
T d1qnia2 154 SYTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRND-RD----------------- 212 (441)
T ss_dssp EEEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS-BC-----------------
T ss_pred ccceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcce-EE-----------------
Confidence 23557888887777776544 3578899999998888775432 21111111100 00
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
.+.+.+
T Consensus 213 -----------------------------------------------------~i~v~n--------------------- 218 (441)
T d1qnia2 213 -----------------------------------------------------WVVVFN--------------------- 218 (441)
T ss_dssp -----------------------------------------------------EEEEEE---------------------
T ss_pred -----------------------------------------------------EEEeCC---------------------
Confidence 000000
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
.-..++++++|+++.. +.++.+.++... ....+.. ++ -......+.++|||
T Consensus 219 --~p~~~~~~~dGk~~~v-~~~~v~vvd~~~----------------------~~~v~~~-IP---vgksPhGv~vSPDG 269 (441)
T d1qnia2 219 --VERIAAAVKAGNFKTI-GDSKVPVVDGRG----------------------ESEFTRY-IP---VPKNPHGLNTSPDG 269 (441)
T ss_dssp --HHHHHHHHHTTCCBCC-TTCCCCEEECSS----------------------SCSSEEE-EC---CBSSCCCEEECTTS
T ss_pred --ccceEEEecCCCEEEe-CCCCcEEEEccc----------------------CCceEEE-Ee---CCCCccCceECCCC
Confidence 0011233455554433 234444444211 1111111 11 12335678999999
Q ss_pred CeEEEEe--CCeEEEEECCCceEE--------EEeeCC---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-----
Q 001190 844 SYVMSAT--GGKISLFNMMTFKVM--------TTFMSP---PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----- 905 (1128)
Q Consensus 844 ~~la~~~--dg~i~vwd~~~~~~~--------~~~~~~---~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----- 905 (1128)
+++++++ +++|.|||+++.+.. ..+.++ .-.....+|++ +|..+.+...|..|..|++...
T Consensus 270 kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~ 348 (441)
T d1qnia2 270 KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYN 348 (441)
T ss_dssp CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhc
Confidence 9988775 799999998754321 111111 11234568999 8889999999999999998522
Q ss_pred -----eeeecc-----cccccCeeEEEEcCCCCEEEEE---cCCC
Q 001190 906 -----EVKSKL-----KGHQKRITGLAFSTSLNILVSS---GADA 937 (1128)
Q Consensus 906 -----~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~---~~Dg 937 (1128)
..+..+ .||...+.+.+++|||+||+++ +.|+
T Consensus 349 ~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 349 GDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR 393 (441)
T ss_dssp TCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred cCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence 122222 5888888899999999999999 5554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=6.5e-14 Score=152.27 Aligned_cols=327 Identities=11% Similarity=-0.011 Sum_probs=205.0
Q ss_pred CCCcEEEEeeccCeEEEEEccCCceecccccccccccc--------cCccc-----cceeccCCCcceEEEEEccCCCEE
Q 001190 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA--------CSLPF-----QASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 355 dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
|+-+.+++|+.+|.|.||++.+++.+..-++ +.... ..... ...-...|.-...+..++|||++|
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV--fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l 86 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPV--FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL 86 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEECS--SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEe--EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence 3445678899999999999999987764222 21110 00000 000122355566777789999999
Q ss_pred EEEe-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC-----------------eEEEEe-c
Q 001190 422 GVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----------------LIKVWE-L 482 (1128)
Q Consensus 422 as~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~-----------------~i~vWd-~ 482 (1128)
++.. .++.|.++|+++++..+... ..+...+..++|+|||+..+++..+.+. .+..+| .
T Consensus 87 fV~d~~~~rVavIDl~t~k~~~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~ 164 (441)
T d1qnia2 87 FINDKANTRVARIRLDIMKTDKITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164 (441)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred EEEcCCCCEEEEEECCCCcEeeEEe--cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence 7665 67899999999987655321 2466789999999999976666555442 234577 6
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC-cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
+.+....+... +....+.+++ +|+++++.+.+. .+..++..+......+.. ......+.++|+|+++..++
T Consensus 165 t~~v~~qI~v~-~~p~~v~~sp--dGk~a~vt~~nse~~~~id~~t~~~~d~i~v-~n~p~~~~~~~dGk~~~v~~---- 236 (441)
T d1qnia2 165 TMDVAWQVIVD-GNLDNTDADY--TGKYATSTCYNSERAVDLAGTMRNDRDWVVV-FNVERIAAAVKAGNFKTIGD---- 236 (441)
T ss_dssp TCSEEEEEEES-SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCSSBCEEEE-EEHHHHHHHHHTTCCBCCTT----
T ss_pred cceeeEEEecC-CCccceEECC--CCCEEEEEecCCCceEEEeccCcceEEEEEe-CCccceEEEecCCCEEEeCC----
Confidence 66666555433 3456677766 678888877653 222222222222111110 00112234678999877653
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE-ECCCcEEEEECCCCeee--------EEEe--cCCCCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNIL--------TSTD--AEGGLP 630 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~--------~~~~--~~~~~~ 630 (1128)
++.+.+++....+.+..++.... ...+.++|||++++++ ..+++|.+||+++.... ..+. .....
T Consensus 237 -~~v~vvd~~~~~~v~~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl- 312 (441)
T d1qnia2 237 -SKVPVVDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL- 312 (441)
T ss_dssp -CCCCEEECSSSCSSEEEECCBSS--CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS-
T ss_pred -CCcEEEEcccCCceEEEEeCCCC--ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc-
Confidence 66777887777777777776543 5679999999998765 58999999998653211 0111 11111
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCc---------cccccccCCccccccCcceeeeeecccccccccCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGL---------RSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1128)
.....+|.++|..+.+...|..|..|++.... .....+.-|-...|...+.+.+++|||++|++...
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 12445899999888888899999999985321 12233333333456666777788899999886644
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=1.2e-09 Score=119.05 Aligned_cols=258 Identities=9% Similarity=0.035 Sum_probs=152.7
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCC-ceEEEEe-eCCCCCeeEEEEcCCCCCE--EEEEe-CCCcEEEEeccc
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKVMTTF-MSPPPASTFLAFHPQDNNI--IAIGT-EDSTIHIYNVRV 904 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~-~~~~~~~-~~~~~~v~~l~~s~~d~~~--lasg~-~dg~v~iwd~~~ 904 (1128)
....+.-++|++|+++|.++..+.+..|.+.. +...... .........+++++ +++. +++.. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34556789999999999988888888877653 2222221 12234566788888 7763 33322 345565554321
Q ss_pred -ceee------------e----cccccccCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCCcccceeEEeecCCCCCCCc
Q 001190 905 -DEVK------------S----KLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 905 -~~~~------------~----~l~~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1128)
+... . .-......+.++.|+|||+++++++. ...|.+|++.....+.... ...........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-~~~~~~~g~gP 195 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc-ceeecCCCCce
Confidence 1000 0 00112234679999999998887753 3578888766433222211 11112223678
Q ss_pred cEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccc-----c-----------CCCCCCCeEEEEEeeCCCEEEEEec-
Q 001190 967 TRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWT-----P-----------QDALSAPISCAVYSCNSQLVFATFC- 1027 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~-----~-----------~~~h~~~v~~l~~s~dg~~l~t~~~- 1027 (1128)
+.++|+||++++.+.. ++.|.+|+........... . ...+......+.++|||++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 8999999999988764 7889999987654321100 0 0011234568899999999998653
Q ss_pred C-----CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE-EEEECCCcEEEEcCCCCC
Q 001190 1028 D-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF-AIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1028 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~s~~~dg~i~iWd~~~~~ 1095 (1128)
+ +.|..|++.....+....... . .......+.+++++|.++++| ++...++.|.+|++....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~----~--~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLS----P--TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEE----E--CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCccceEEEEEEecCCCceeeEeEee----E--EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 2 237788876532222111000 0 001223456789998667755 555688999999886554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.17 E-value=2.5e-08 Score=108.32 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=105.3
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCC-ceEE--EEee--CCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEeccc
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVM--TTFM--SPPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRV 904 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~--~~~~--~~~~~v~~l~~s~~d~~~l-asg~~dg~v~iwd~~~ 904 (1128)
.+.+++|+|||+++++++ .+.|.+|+... +... .... ........++|+| +++++ ++...+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 467899999999998887 46788887653 3222 2222 2345789999999 77766 4555788999999876
Q ss_pred ceeeecc-------------------cccccCeeEEEEcCCCCEEEEEcC------CCcEEEEECCCCcccceeEEeecC
Q 001190 905 DEVKSKL-------------------KGHQKRITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPA 959 (1128)
Q Consensus 905 ~~~~~~l-------------------~~h~~~V~~l~~s~d~~~l~s~~~------Dg~i~iwd~~~~~~~~~~~~~~~~ 959 (1128)
++..... ..+......+.++|||++|+++.. ...|..|++.....+.........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 5322111 112233567899999999887642 223777877654333222221111
Q ss_pred CCCCCCccEEEEcC-CCCEEEEEe--cCeEEEEecCCc
Q 001190 960 GKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKM 994 (1128)
Q Consensus 960 ~~~~~~v~~v~~s~-d~~~l~~~~--d~~i~v~d~~~~ 994 (1128)
.........++++| +|++|+++. ++.|.+|++...
T Consensus 305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 22225567899998 899998874 789999987643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.1e-08 Score=104.15 Aligned_cols=224 Identities=10% Similarity=0.104 Sum_probs=137.2
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCC---eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+..+...+..-+|||||++||...... .+.+.+..++.... +..+.+......|+|||+.+.+ ....++...
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i~~-~~~~~~~~~ 108 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAF-ALSKTGSLN 108 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEE-EECTTSSCE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCeeeE-eeecCCccc
Confidence 444567788999999999999875433 46666766655332 4567788899999999996333 333343333
Q ss_pred EEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEE--ecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 479 vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w--d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
++. ....................++... ...+++...+|...+| ++..... ..............++|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEEETTTCCEEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred eeecccccccceeeeecccccccccccccc-ccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeE
Confidence 333 3333333333333333444444433 2355555556655555 4443322 23344455777889999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
..... .+...+.+.+...+.... .. ... ......|+|||++|+..+. ...|+++++..+........ ...
T Consensus 187 ~~~~~-~~~~~i~~~~~~~~~~~~-~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~---~g~ 259 (269)
T d2hqsa1 187 MVSSN-GGQQHIAKQDLATGGVQV-LS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT---DGQ 259 (269)
T ss_dssp EEEEC-SSCEEEEEEETTTCCEEE-CC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS---SSE
T ss_pred EEeec-CCceeeeEeecccccceE-ee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC---CCc
Confidence 87642 244566666766655422 22 222 4566789999999987653 45789999987765443332 225
Q ss_pred cceEEEcC
Q 001190 632 LPRLRFSK 639 (1128)
Q Consensus 632 v~~v~~sp 639 (1128)
+...+|||
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 67788988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.09 E-value=3.1e-08 Score=104.58 Aligned_cols=242 Identities=10% Similarity=0.046 Sum_probs=157.5
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
.+.+....+.-...+..++++|||+ ++++...+++|..|+....... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence 3455566666666799999999998 7888888998888875533221 33456789999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
+|+|||+++++...++.+.+|+....................+.+++.++|. ++++.+.++.+..+| ..+.....+.
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999988888888888876443222111123455688999999998 788888888898888 4443221111
Q ss_pred ----------CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 492 ----------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 492 ----------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
........+.+. ++.++++.+..+.|..++......... ..........++++++|++.++..
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-- 226 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-- 226 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB--
T ss_pred CCccceeeccCccccccccccc---CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc--
Confidence 111234455542 234666777888888888765443221 111233456799999998766654
Q ss_pred cCCCceEEEEeCCCCceeeEecccc-CCceeEEEE---eCCCCEEEEEECC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQF---DTTQNHFLAVGED 606 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~---~~~~~~l~~~s~d 606 (1128)
.++.|..++.. ++......... -.....++| ++|++.|+.++..
T Consensus 227 --~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 --IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 36778888765 33332222211 124678999 5677877776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.1e-08 Score=109.92 Aligned_cols=372 Identities=9% Similarity=0.025 Sum_probs=205.2
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc--CCceeEEEEeCCCCEEEEEE---------CCCcEEEEE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVG---------EDSQIKFWD 613 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s---------~dg~i~iwd 613 (1128)
.|.+++.++... .++.|.+||+.+++....+.... ...+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 467777765432 36779999998887644444332 22456678999999988764 357889999
Q ss_pred CCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
+.++..............+....|||||+.||... ++.|.+.+..++.. .+.. .+|..-
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~-~~lt------------------~~g~~~- 156 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA-IRVV------------------STGKEG- 156 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC-EEEE------------------CCCBTT-
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce-EEEe------------------cccCcc-
Confidence 99887655444333334566789999999999876 56777776655421 1111 010000
Q ss_pred ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
.+.-| +.-|-.. ....+.-.++-||
T Consensus 157 ----------------------------------~i~nG-----~~d~vye----------------ee~~~~~~a~~WS 181 (465)
T d1xfda1 157 ----------------------------------VIYNG-----LSDWLYE----------------EEILKTHIAHWWS 181 (465)
T ss_dssp ----------------------------------TEEEE-----ECCHHHH----------------HTTSSSSEEEEEC
T ss_pred ----------------------------------eeecc-----ccchhhh----------------hhhccccceEEEC
Confidence 00000 0000000 0011112466788
Q ss_pred cCcceEEEeec-cceeEeeeccccC--C---------CCCCceeeeeccceeccCCCccccccccC---CCCCCCeeEEE
Q 001190 774 NSAVGLLALGS-NGVQKLWKWHRNE--Q---------NPSGKATASAVPQHWLPSSGLLMANDVAG---VNLEEAVPCIA 838 (1128)
Q Consensus 774 ~~g~~l~~~~~-dg~i~lw~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~ 838 (1128)
|||++|+.... +..+..+.+.... . ...|.......+.++++.++......... .....-+..+.
T Consensus 182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~ 261 (465)
T d1xfda1 182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (465)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence 99988887764 4556666554311 1 11222222334556777665532211111 01223467899
Q ss_pred eccCCCeEEEEe--C---CeEEEEECCCceEEEEeeCCCC-----CeeEEEEcCCCCCEEE---EEeCCC--cEEEEecc
Q 001190 839 LSKNDSYVMSAT--G---GKISLFNMMTFKVMTTFMSPPP-----ASTFLAFHPQDNNIIA---IGTEDS--TIHIYNVR 903 (1128)
Q Consensus 839 ~s~dg~~la~~~--d---g~i~vwd~~~~~~~~~~~~~~~-----~v~~l~~s~~d~~~la---sg~~dg--~v~iwd~~ 903 (1128)
|++|+++++... + ..|.++|..++++...+..... .-....|++ ||+.++ ....+| .++...+.
T Consensus 262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEec
Confidence 999998777664 2 2388899999987665543222 123568899 665332 222333 34433322
Q ss_pred ------cceeeecccccccCeeEE-EEcCCCCEEE-EEcCCC--cEEEEECC--CCcccceeEEeecCCCCCCCccEEEE
Q 001190 904 ------VDEVKSKLKGHQKRITGL-AFSTSLNILV-SSGADA--QLCVWSID--TWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1128)
Q Consensus 904 ------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~~~Dg--~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~~ 971 (1128)
.++.+..+....-.|..+ +|..+++.+. ++..++ .-.||.+. .+.....+... . ........+.|
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~--~-~~~~~~~~~~~ 417 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD--L-VENCTYFSASF 417 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT--S-SSSCCCCEEEE
T ss_pred cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccc--c-CCCCCEEEEEE
Confidence 233344555444456664 6888877654 444332 33455543 32221111111 1 11145678999
Q ss_pred cCCCCEEEEEe----cCeEEEEecCCcccccccc
Q 001190 972 NADQVRMLVVH----ETQLAIYDASKMERIRQWT 1001 (1128)
Q Consensus 972 s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~ 1001 (1128)
||++++++... --.+.+++..+++.+..+.
T Consensus 418 S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 418 SHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 99999998642 2357777777777666554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.9e-08 Score=103.04 Aligned_cols=241 Identities=13% Similarity=0.071 Sum_probs=152.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccC--eEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+..-........+...+..-+|||||++++.+....+ .+.+.+..++... .+..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------QVAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------EEEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--------------------EEee
Confidence 55544444555556667888999999999997665554444 3445555544432 2555
Q ss_pred CCcceEEEEEccCCCEEEEEeC-CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--
Q 001190 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-- 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-- 481 (1128)
+.+.+....|||||+.++.... ++...++.......... ....+........+++++.. .+++...++...+|.
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccce--eeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7788899999999999987664 33333333332221111 12344555566778888886 455555566545544
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
..+.....+..+........+++ +++.++..+ ..+...+|..+...................|||||+.|+..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~- 234 (269)
T d2hqsa1 158 INGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ- 234 (269)
T ss_dssp TTSSCCEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-
T ss_pred cccccceeeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-
Confidence 55555556666666677777866 556665554 44566666655555555555566667788999999999876642
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+...|+++++..+...+ +..... .+...+|+|
T Consensus 235 ~~~~~l~~~~~dg~~~~~-lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKAR-LPATDG-QVKFPAWSP 267 (269)
T ss_dssp TTEEEEEEEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence 346789999998776544 443333 566778887
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.00 E-value=5.7e-08 Score=99.88 Aligned_cols=238 Identities=8% Similarity=0.020 Sum_probs=155.5
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 907 (1128)
+......++++++|.+.++.. .+.+..++...................+++++ ++.++++...++.+++++-.+...
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 455678999999999776654 46677776554332222222233467899999 888888887777777776665555
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeE
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQL 986 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i 986 (1128)
+....+ .....++++.++++++++-..+..+..++........ ... ........++++++|..+++. .++.|
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~----~~~--~~~~~p~~i~~~~~g~~~v~~~~~~~i 163 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPF--TGLNDPDGVAVDNSGNVYVTDTDNNRV 163 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE----CCC--CSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred eeeeee-eeecccccccccceeEeeccccccccccccccceeee----eee--cccCCcceeeecCCCCEeeeccccccc
Confidence 544433 2456899999999988877777777777766543211 111 111456789999999876664 36789
Q ss_pred EEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
..++............. ......+++.++|+++++....+.|..++...... ..+. ...-..+..
T Consensus 164 ~~~d~~~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-----------~~~~~~P~~ 228 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-----------FTGLNTPLA 228 (260)
T ss_dssp EEECTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-----------CCSCCCEEE
T ss_pred cccccccceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-----------cCCCCCeEE
Confidence 99987654433222121 45678999999999877777788888888655432 2221 122235688
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
|++++ +++++++-..+++|+..+.
T Consensus 229 i~~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 229 VAVDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EEEeC-CCCEEEEECCCCEEEEEeC
Confidence 99998 5888888777776665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.94 E-value=1.2e-07 Score=97.38 Aligned_cols=240 Identities=7% Similarity=-0.037 Sum_probs=150.5
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+......++++++|+.+++..+..+.|..++......... ..+-......++++++|+.++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 4456789999999995555555667777776654432210 111123457889999999887
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~ 501 (1128)
+...++.+++++-.++..+. .. .......++++.++++ ++++-.....+..++..+.....+. .......+++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77777677766655544332 12 2234578999999998 6666666777888884444333322 2223456788
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
+.+ ++.++++...++.|..++.+.................++++++|+++++.. ..+.|..++..... ...+.
T Consensus 147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSC-CEECC
T ss_pred ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCe-EEEEc
Confidence 865 567888888888999998776554443334445678999999998777664 36778888765443 22222
Q ss_pred cccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
...-.....++++++|+.+++-..++.|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 221124567888888876666555666665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.93 E-value=6.6e-08 Score=102.00 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=152.2
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee-e
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-S 909 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~ 909 (1128)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+....... .
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 4578999999999988876 78898888653 3 233444667899999999 8999999988999988887643211 1
Q ss_pred cc--cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee--cCCCC--CCCccEEEEcCCCCEEEEE--
Q 001190 910 KL--KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI--PAGKT--PTGDTRVQFNADQVRMLVV-- 981 (1128)
Q Consensus 910 ~l--~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~--~~~v~~v~~s~d~~~l~~~-- 981 (1128)
.+ .........+++.++++++++.+.++.+..++...+.......... ..... ......+.++ +..+..+
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 11 1234567899999999999998889989888888764322111100 00001 1233455554 4455554
Q ss_pred ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCc
Q 001190 982 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT 1061 (1128)
Q Consensus 982 ~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1128)
..+.|..++.............. .......++|++||+++++...++.|..++.. |+........ ...
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~----------~~~ 250 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----------QGV 250 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----------GTC
T ss_pred CCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecC----------CCC
Confidence 47888888877654433322111 13456789999999988887789999999875 4433322210 122
Q ss_pred cceEEEEEecC--CCCEEEEEECC
Q 001190 1062 VYPLVVAAHPL--EPNQFAIGLTD 1083 (1128)
Q Consensus 1062 ~~~~~~~~~p~--~~~~l~s~~~d 1083 (1128)
..+++++|.+. |++.|..++..
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEcCCCCCCCEEEEECCC
Confidence 34689999432 56766655544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.90 E-value=4e-07 Score=96.00 Aligned_cols=247 Identities=14% Similarity=0.083 Sum_probs=154.6
Q ss_pred CcEEEEEEeCCCCcEEEEeec-------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 345 STVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
......+|.|+|+ ++++... ++.|..||..++....... .....-.+.-..++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCC
Confidence 3467789999999 4444221 4678888888776432100 001111234578999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEecC---------------CCeEEEEe
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---------------DKLIKVWE 481 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~---------------d~~i~vWd 481 (1128)
|..|+++...+.|...+.+++..........+.. ...++++|.++|. +.++-.. +|.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888877788888987654221111111111 1367899999998 5555321 23455555
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCc---cEEEEEeccCcEEEEecCCCCceee------ecC-CCCeEEEEEEcCCCC
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENI---QFIFSTAIDGKIKAWLYDTMGSRVD------YDA-PGHWCTTMLYSADGS 551 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~------~~~-~~~~i~~~~~s~~g~ 551 (1128)
.+|+...... .-..-+.++|++..++ .+.++-+..+.|..|++........ +.. .......+++..+|+
T Consensus 160 ~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 160 TDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp TTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 5665443332 2233467888765443 2444556778898888765443321 111 122457899999999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEE-EECCCcEEEEECC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMD 615 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~ 615 (1128)
..++.. +.+.|.+||...++.+..+..... ...+++|.++++.|+. .+.+|.|+..++.
T Consensus 239 lyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 777654 478899999988887777765543 6788999999876544 4567888887764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.7e-07 Score=101.10 Aligned_cols=138 Identities=5% Similarity=-0.021 Sum_probs=91.8
Q ss_pred EEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC---CCCeEEEeccCCCCccEEEEEe---------ccCcEEEE
Q 001190 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTA---------IDGKIKAW 523 (1128)
Q Consensus 457 l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~~w 523 (1128)
..|.+++. ++. -..+|.|.+|| .+++....+..+ .-.+....|++ |+++++... ..+.+.++
T Consensus 22 ~~W~~~~~--~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTE--FIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSC--BCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCc--EEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEE
Confidence 45888887 444 45578999999 666654333332 22455556655 677777653 35678899
Q ss_pred ecCCCCceeeec--CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc--------------
Q 001190 524 LYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS-------------- 587 (1128)
Q Consensus 524 d~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-------------- 587 (1128)
|+.++....... .....+....|||||+.++... ++.|++.+..++..++.........
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~ 171 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence 998776544322 2233566788999999999886 6779999888776655443222111
Q ss_pred ---eeEEEEeCCCCEEEEEE
Q 001190 588 ---NGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 588 ---v~~~~~~~~~~~l~~~s 604 (1128)
-..+.|||||++|+...
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEE
T ss_pred ccccceEEECCCCCeEEEEE
Confidence 24577999999999865
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=8.6e-07 Score=91.86 Aligned_cols=242 Identities=10% Similarity=0.090 Sum_probs=164.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeec---ccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID---AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~---~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
....|+++|+|+.+++-..++.|++||.+ |+.++.+.+.. +....-..+++..+....+++..+.++.|.+++..|
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46799999999988887788899999976 45444322111 112234556777665543444555667888888888
Q ss_pred CeEEEecC-CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee--cCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 485 ~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
.....+.. .......+++.+ ++.++++....+.+.+++.+. +....+ ..+......+++.++|+.+++..
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~---- 175 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN---- 175 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEG----
T ss_pred cceeecCCCcccccceecccc--CCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeec----
Confidence 88777743 344567788754 667777777777788886543 333333 23445778899999998776655
Q ss_pred CCceEEEEeCCCCceeeEeccc-cCCceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
..+.|++||. +++.+.++... .......+++.++|+.+++-+. ++.|.+|+. +|+.+..+...........+++.|
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 3778999996 45666666321 1124667899999987766543 457999984 677777765544444568999999
Q ss_pred CCCEEEEEEcCCcEEEEEccc
Q 001190 640 EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+|.+ ++++.++.|++|....
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQ 273 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSC
T ss_pred CCcE-EEEeCCCeEEEEEeee
Confidence 9965 5566789999998754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.88 E-value=4.2e-07 Score=95.77 Aligned_cols=239 Identities=14% Similarity=0.135 Sum_probs=154.0
Q ss_pred eeEEEeccCCCeEEEEe--------CCeEEEEECCCceEEEEeeCC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 834 VPCIALSKNDSYVMSAT--------GGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~--------dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
...++|.+||+++++.. +|+|..||..+++........ .+.-..++|++ ++..++++...+.|..++
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEEe
Confidence 56789999999887643 367889998887654433211 22356899999 777777777777788888
Q ss_pred cccceeeecccccc----cCeeEEEEcCCCCEEEEEcC---------------CCcEEEEECCCCcccceeEEeecCCCC
Q 001190 902 VRVDEVKSKLKGHQ----KRITGLAFSTSLNILVSSGA---------------DAQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1128)
Q Consensus 902 ~~~~~~~~~l~~h~----~~V~~l~~s~d~~~l~s~~~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1128)
.+.+.......... ...+.+++.++|.+.++-.. +|.|..++.+ ++... .....
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~~----- 171 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAF----- 171 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEE-----
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCCc-----
Confidence 77654322111111 13578999999998887432 2234334332 22211 11111
Q ss_pred CCCccEEEEcCCCC----EEEEEe--cCeEEEEecCCcccccc---cc-cCCCCCCCeEEEEEeeCCCEEEEEecCCcEE
Q 001190 963 PTGDTRVQFNADQV----RMLVVH--ETQLAIYDASKMERIRQ---WT-PQDALSAPISCAVYSCNSQLVFATFCDGNIG 1032 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~----~l~~~~--d~~i~v~d~~~~~~~~~---~~-~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~ 1032 (1128)
.....++|+|++. .|.+++ .+.|..|++.....+.. +. ....+......+++..+|++.++....+.|.
T Consensus 172 -~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 172 -QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp -SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred -ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence 3456799998764 555553 67888888764433221 11 1111133467899999999877777889999
Q ss_pred EEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCcEEEEcCCCC
Q 001190 1033 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1033 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~~dg~i~iWd~~~~ 1094 (1128)
+||.+.++.+..+.. ....+.+++|.| |++ ++++.+.+|.|...++...
T Consensus 251 ~~dp~~g~~~~~i~~------------p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRC------------PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EECTTCBSCSEEEEC------------SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred EEeCCCCEEEEEEEC------------CCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCC
Confidence 999998887776651 123568899999 565 6788888888887776544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=1.5e-06 Score=89.95 Aligned_cols=245 Identities=11% Similarity=0.096 Sum_probs=161.6
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC-
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND- 843 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg- 843 (1128)
.....++++++|+.+++-..+..|++|+.+ |+..... . ..+.. . ........+++..+.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~-----~-~~~~~-----~--~~~~~p~~~~~~~~~~ 82 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQF-----G-ECGKR-----D--SQLLYPNRVAVVRNSG 82 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEE-----C-CBSSS-----T--TCBSSEEEEEEETTTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEe-----c-ccCCC-----c--cccccccccccccccc
Confidence 456899999999977776678889988743 2221110 0 00000 0 012234455655554
Q ss_pred CeEEEEe--CCeEEEEECCCceEEEEee-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc--cccccCe
Q 001190 844 SYVMSAT--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL--KGHQKRI 918 (1128)
Q Consensus 844 ~~la~~~--dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V 918 (1128)
.++++.. ++.|.+++. .++....+. ........+++.+ ++.++++....+.+.+++.. ++.+..+ ..+....
T Consensus 83 ~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 83 DIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 159 (279)
T ss_dssp EEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred ccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence 4444443 456888876 466666654 2345678899998 88888888888889888854 5555544 3455678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER 996 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~ 996 (1128)
..+++.+++..+++....+.|.+||... +.+..+ ...........|+++++|..+++-. ++.|.+|+. +|+.
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~----g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~ 233 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI----GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL 233 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE----SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred ceeeeccceeEEeeeccccceeeeecCC-ceeeee----cccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCE
Confidence 8999999999999888899999999765 322211 1111225578899999999777643 456999984 5776
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCc
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
+..+..... ......+++.+||++ ++++.++.|++|......
T Consensus 234 ~~~~~~~~~-~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 234 ISALESKVK-HAQCFDVALMDDGSV-VLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEEESSC-CSCEEEEEEETTTEE-EEEETTTEEEEEECSCCC
T ss_pred EEEEeCCCC-CCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeeec
Confidence 666544321 446789999999975 455678999999987653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.80 E-value=2.2e-06 Score=90.58 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=150.8
Q ss_pred CCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC----CcEEEEecccc
Q 001190 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVD 905 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~ 905 (1128)
...+..++|.++|+++++-. +++|..|+..+.+....+.........+++++ +|+++++...+ +.+...+...+
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 34457899999999666654 78899999988776666665666789999999 88888765432 34555555544
Q ss_pred eeeecccc--cccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 906 EVKSKLKG--HQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 906 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
........ -......+++.++|++.++.... +.+..++.+.+.. ....... .....++|+||++.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~------~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNI------SVANGIALSTDEKV 190 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEE------SSEEEEEECTTSSE
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeecc------ceeeeeeeccccce
Confidence 43322221 12346789999999987764321 2344444443322 2111111 34578999999998
Q ss_pred EEEEe--cCeEEEEecCCccc-cccc----ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCC
Q 001190 978 MLVVH--ETQLAIYDASKMER-IRQW----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050 (1128)
Q Consensus 978 l~~~~--d~~i~v~d~~~~~~-~~~~----~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 1050 (1128)
|.+++ .+.|..|++..... .... ............+++..+|++.++....+.|.+||. .|+.+..+..+..
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence 87764 78899998764321 1110 000011234678999999998888888999999995 7999888874321
Q ss_pred CCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1051 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
. ..+...+++++|.|. ...+++..
T Consensus 270 ~------~~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 270 D------EGHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp G------GTCSCBCCEEEECTT-SCEEEEEE
T ss_pred C------CCcCceeeeEEEeCC-CCEEEEEc
Confidence 0 123345678999984 45554444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.68 E-value=8.9e-06 Score=85.70 Aligned_cols=232 Identities=12% Similarity=0.048 Sum_probs=149.2
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
.-.+..++|.++|+ |.++-...+.|.-|+.++++.... ..........++|+|||+++++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEE
Confidence 34567999999998 777777788998898877654321 2334556889999999998877
Q ss_pred EeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC------CCeEEEEecCCCeEEEecCC
Q 001190 424 AFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGH 493 (1128)
Q Consensus 424 ~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~------d~~i~vWd~~g~~~~~~~~h 493 (1128)
...+ +.+...+..++...... .-..-....+.+++.++|. +.++... .+.+..++.+++.+..+...
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~ 175 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN 175 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred ecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEeec
Confidence 5432 33445555554432211 1111133578899999998 5555332 13455566566555544433
Q ss_pred CCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCceee--------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 494 EAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~--------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
-...+.++|++ +++.| ++-+..+.|..|+++....... ..........+++.++|++.++.. +.+
T Consensus 176 ~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~----~~g 249 (319)
T d2dg1a1 176 ISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY----GQG 249 (319)
T ss_dssp ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE----TTT
T ss_pred cceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc----CCC
Confidence 34467889876 55555 5556788999998865432211 111223467899999999777665 488
Q ss_pred eEEEEeCCCCceeeEecccc-----CCceeEEEEeCCCCEEEEEEC
Q 001190 565 FLVEWNESEGTIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE 605 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~ 605 (1128)
.|.++|. .|+.+..+.... ...+.+++|.++...+++...
T Consensus 250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 9999995 688887775332 124678999988877777654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.53 E-value=3.9e-06 Score=86.99 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=129.5
Q ss_pred EEeCC--CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC-C
Q 001190 351 DFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-K 427 (1128)
Q Consensus 351 ~fspd--g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d 427 (1128)
..||| |++++.+ .++.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEE--eCCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 9976665 35678888998877532 5667788999999999999997642 2
Q ss_pred -----CeEEEEEccCCCcceecee---ecccccceeEEEEecCCCeEEEEEecC------CCeEEEEecCCCeEEEecCC
Q 001190 428 -----HLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGH 493 (1128)
Q Consensus 428 -----~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~fs~d~~~~~l~s~s~------d~~i~vWd~~g~~~~~~~~h 493 (1128)
..|.+++..+++..+.... ............|+|||+. |+.... ...+...+..+.........
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--IISTDAMQPFSSMTCLYRVENDGINFVPLNLG 140 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE--EEEECTTSSSTTCCEEEEEEGGGTEEEECCSC
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE--EEEEEccCCCccceeeeeecCCCceeEEecCC
Confidence 2477778777765432100 0122335677899999994 444322 12344555444443333222
Q ss_pred CCCeEEEeccCCCCccEEEEEeccC-----------cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDG-----------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
......+ ..++..++....+. ....+.... .................++++ .++... ...+
T Consensus 141 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 212 (281)
T d1k32a2 141 --PATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DIDG 212 (281)
T ss_dssp --SCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTTS
T ss_pred --ccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-cccc
Confidence 1222222 11223333322211 111111111 111122222233344445554 333332 2345
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 622 (1128)
...|+++|+.+++..+ +..+.. .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus 213 ~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 6778999988776544 322222 2335689999988764 468899999988876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.39 E-value=0.00015 Score=74.78 Aligned_cols=223 Identities=8% Similarity=0.040 Sum_probs=147.3
Q ss_pred eEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc-
Q 001190 835 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL- 911 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l- 911 (1128)
....|++....|...+ .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3567887665555554 688999999988654 332 345788999988 7777764 444 5899999988654322
Q ss_pred -cc--cccCeeEEEEcCCCCEEEEEcC----CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--
Q 001190 912 -KG--HQKRITGLAFSTSLNILVSSGA----DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-- 982 (1128)
Q Consensus 912 -~~--h~~~V~~l~~s~d~~~l~s~~~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-- 982 (1128)
.. ....++.+.+.++|++.++... .+.-.+|.+..++......-. .....++|+++++.+..++
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-------~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-------SIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-------SSEEEEEECTTSCEEEEEETT
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-------CCcceeeecCCCceEEEeecc
Confidence 11 1235788999999998776542 234567777666543322211 4567899999999887765
Q ss_pred cCeEEEEecCCcccc-----cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccC
Q 001190 983 ETQLAIYDASKMERI-----RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 983 d~~i~v~d~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1057 (1128)
.+.|..|++...... ..+............+++..+|.+.++.-..+.|.+|| ..|+.+..+..+
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP--------- 238 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVP--------- 238 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECS---------
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCC---------
Confidence 678888887532111 11111111145678999999999777777788999999 578888888732
Q ss_pred CCCccceEEEEEecCCCC-EEEEEEC
Q 001190 1058 GSQTVYPLVVAAHPLEPN-QFAIGLT 1082 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~-~l~s~~~ 1082 (1128)
.-.+++++|-..|.+ +++|...
T Consensus 239 ---~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 239 ---GKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---CCceEEEEEeCCCCCEEEEEECC
Confidence 124689999754544 4555444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.37 E-value=1.6e-05 Score=82.17 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=125.6
Q ss_pred cccccCCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccC-----eEEEEEccCCceeccccccccccc
Q 001190 317 EVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG-----EITLWELAMRDRLVSKPFKIWDMA 391 (1128)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~-----~i~iwd~~~~~~~~~~~~~~~~~~ 391 (1128)
.+.|...++ +|.++-..........+...+...+|||||++++.+...++ .|.+++..+++...-.
T Consensus 14 ~v~f~~~~d-l~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt-------- 84 (281)
T d1k32a2 14 RIIFVCCDD-LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT-------- 84 (281)
T ss_dssp EEEEEETTE-EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC--------
T ss_pred EEEEEeCCc-EEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee--------
Confidence 467776655 88776656666666668888999999999997766654332 4677777777653210
Q ss_pred ccCccccceeccCCCcceEEEEEccCCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCe
Q 001190 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1128)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~ 465 (1128)
................+|+|||+.|+..... ..+...+...+.... .+...... .+.+++..
T Consensus 85 -----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~ 152 (281)
T d1k32a2 85 -----YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP------LNLGPATH-ILFADGRR 152 (281)
T ss_dssp -----CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE------CCSCSCSE-EEEETTEE
T ss_pred -----ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE------ecCCccce-eeecCCCe
Confidence 0000112233456788999999999876432 235555665543221 22333333 44455553
Q ss_pred EEEEEecCCC-----------eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC--cEEEEecCCCCcee
Q 001190 466 LCVVTCGDDK-----------LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRV 532 (1128)
Q Consensus 466 ~~l~s~s~d~-----------~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~ 532 (1128)
.++....+. ...++............+........+.. + ..+.....++ .|.++|++......
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 153 -VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp -EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred -EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec--c-ccceecccccccceEEEeCCCCceEE
Confidence 333332221 11222222222222222333333333322 2 2344444443 45566766655443
Q ss_pred eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 533 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
........ ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 229 lt~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 229 HTSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CCCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred eecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 32222223 345899999998754 56799999988876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.22 E-value=0.00038 Score=71.63 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=143.8
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
.+..|++....|..+--..+.|.-||..+++... ......+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---------------------~~~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV---------------------HALPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------------------EECSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE---------------------EECCCCcEEEEEecCCCEEEEE-eC
Confidence 4567887544466665567899999998876432 1124478899999999877754 44
Q ss_pred CeEEEEEccCCCcceeceeecc--cccceeEEEEecCCCeEEEEEecC----CCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~--h~~~v~~l~fs~d~~~~~l~s~s~----d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
.|.++|..+++... +..... ....++++.+.++|. +.++... .+.-.+|. ..|+....... -..-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 58899999886432 111111 123688999999998 4443321 23445666 55654443332 3345778
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCc------ee--eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGS------RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~------~~--~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
+|+++.+ .++++.+..+.|..++++.... .. ...........+++..+|++.++.. +.+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~----~~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee----CCCceEEecC-
Confidence 8876432 3555666778898888754321 11 1223445688999999998776654 3678999995
Q ss_pred CCceeeEeccccCCceeEEEEe-CCCCEEEEEE
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 604 (1128)
.|+.+..+..... .+++++|. ++.+.|+..+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888876554 68888996 6666666554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.80 E-value=0.0002 Score=74.12 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=100.7
Q ss_pred eEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc-------------cEEEEEeccCcEEEEecCCCCc
Q 001190 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-------------QFIFSTAIDGKIKAWLYDTMGS 530 (1128)
Q Consensus 465 ~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~-------------~~l~s~~~dg~i~~wd~~~~~~ 530 (1128)
++.+.||+..|.|+|+- -+++.+..+.-....-. --|-.+... .+|.. ..+.+..|
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~------- 82 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN------- 82 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC-------
T ss_pred EEEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC-------
Confidence 45788999999999999 89998877742211000 000000000 01110 00111112
Q ss_pred eeeecCCCCeEEEEEEc---CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEe--CCCCEEEEEEC
Q 001190 531 RVDYDAPGHWCTTMLYS---ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGE 605 (1128)
Q Consensus 531 ~~~~~~~~~~i~~~~~s---~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~s~ 605 (1128)
+..+-. .+++. +||+++++... .+.+|.+.|+.+.+..+.........+..++.. |+..++++++.
T Consensus 83 -----GD~HHP-~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 83 -----GDLHHV-HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp -----CCBCCE-EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEEC
T ss_pred -----CCcCCC-cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCc
Confidence 111111 44443 48999998764 688999999999998775554433345656654 45578887775
Q ss_pred C------------------CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 606 D------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 606 d------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
+ +.+.++|.++.+....+...+ ....+.++++|+++++.+.+
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 3 236788999999888877654 35789999999999888753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.79 E-value=0.016 Score=56.36 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=147.3
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeeccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLK 912 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~ 912 (1128)
..+.-.+|..+.||.-....+.+||+++.+.++.+.- ...|.--.|-. .+.|+..+ +..|+-|+++.. .+.+.+.
T Consensus 65 AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fd 140 (327)
T d1utca2 65 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 140 (327)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred hhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhh
Confidence 4466778999999888888899999999999888774 34666677764 45666665 668999999532 4555555
Q ss_pred ccc----cCeeEEEEcCCCCEEEEEc---C----CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc--CCC-CEE
Q 001190 913 GHQ----KRITGLAFSTSLNILVSSG---A----DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN--ADQ-VRM 978 (1128)
Q Consensus 913 ~h~----~~V~~l~~s~d~~~l~s~~---~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~d~-~~l 978 (1128)
.|. ..|..-..++++++++..| . .|.+.+|..+.+.. +..++|. .....+.+. ++. ..+
T Consensus 141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s------Q~ieGha-a~F~~~~~~g~~~~~~lf 213 (327)
T d1utca2 141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHA-ASFAQFKMEGNAEESTLF 213 (327)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE------EEECCSE-EEEEEECCTTCSSCEEEE
T ss_pred hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC------cccccee-eeeEEEEcCCCCCCceEE
Confidence 554 4577788899999887654 2 36788999887532 2223332 111111111 111 222
Q ss_pred EEEe----cCeEEEEecCCccc---------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 979 LVVH----ETQLAIYDASKMER---------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~~----d~~i~v~d~~~~~~---------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
+.+. .+++.|.++..... +..+.++++-..-..++..|+.-..++.-..-|.|++||++||.++..-
T Consensus 214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n 293 (327)
T d1utca2 214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 293 (327)
T ss_dssp EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence 2222 46888988875321 1122223333455678889998888999999999999999999998877
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEE
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
+-. .+.+++ -+-+. +..=+++-..+|.|.
T Consensus 294 RIs----------~~~iF~--~a~~~-~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 294 RIS----------GETIFV--TAPHE-ATAGIIGVNRKGQVL 322 (327)
T ss_dssp ECC----------SSCEEE--EEEET-TTTEEEEEETTSEEE
T ss_pred ecC----------CCceEE--eccCC-CCceEEEECCCCeEE
Confidence 721 344443 23333 234455555777764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=0.013 Score=58.18 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=131.8
Q ss_pred CCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
..+..++|....+.|..++ ++.|+..++........+......+.++++....+++..+-...+.|.+.++.......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 4477889998888887775 57799999876655555544446788999987455555666677899999987654333
Q ss_pred cccccccCeeEEEEcCCCCEEEEEcC-CCcEEEE--ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVW--SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
.+.........+++.|...+|.-... .+..+|| +++..... .+ .. . .-.....+++++.+..|..++ .+
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i-~~--~--~~~~P~glaiD~~~~~lYw~d~~~~ 189 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-IL-AQ--D--NLGLPNGLTFDAFSSQLCWVDAGTH 189 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EE-EC--T--TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-ee-ee--e--cccccceEEEeecCcEEEEEeCCCC
Confidence 33333456889999998776664432 2333454 45443221 11 11 1 114567899999888887765 57
Q ss_pred eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeC
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|...++........... .....++++. +.+|+... ..+.|...|..+|+....+.
T Consensus 190 ~I~~~~~~g~~~~~v~~~----~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp EEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCeEEEECC----CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 788888865443322222 2234567764 55566554 66889999999998877766
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.028 Score=55.75 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=142.6
Q ss_pred ccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+..+...+..++|.+.++.|.-.. .++.|...+++++.... .+......+.++++..-+.. +.++-...+.|.+.
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~ 106 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVA 106 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEE
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEE
Confidence 444555688899998888777664 56778888887665432 12233356889999876664 34455667899999
Q ss_pred ecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEEeccCc--EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 481 ELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 481 d~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+.+|.....+. ........+++.|. .|.++.+-...+. |..-+++...........-.....+++.+.++.|..+-
T Consensus 107 ~~dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 107 KMDGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred ecCCceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEe
Confidence 96665544443 33356788998765 3334444333233 43345554444443433445678999999888887764
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
. +.+.|...++........+.+... ...+++. +.+|+... ..+.|...|..+++.+..+..... .....++
T Consensus 186 ~---~~~~I~~~~~~g~~~~~v~~~~~~--P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~ 257 (263)
T d1npea_ 186 A---GTHRAECLNPAQPGRRKVLEGLQY--PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGIT 257 (263)
T ss_dssp T---TTTEEEEEETTEEEEEEEEECCCS--EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEE
T ss_pred C---CCCEEEEEECCCCCeEEEECCCCC--cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEE
Confidence 3 578899999876655444544332 3356664 45666665 678899999999988776643332 2445666
Q ss_pred EcCC
Q 001190 637 FSKE 640 (1128)
Q Consensus 637 ~sp~ 640 (1128)
+.++
T Consensus 258 v~~~ 261 (263)
T d1npea_ 258 IALS 261 (263)
T ss_dssp EECS
T ss_pred EeCC
Confidence 5543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.68 E-value=0.0062 Score=65.24 Aligned_cols=278 Identities=8% Similarity=-0.028 Sum_probs=140.8
Q ss_pred EEEEEEeCCCCcEEEEeecc-----C------eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 347 VISMDFHPSHQTLLLVGSSN-----G------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d-----~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+...+...+|+ +++.|+.+ + .+.+||..+++-... ......|.......++.
T Consensus 22 ~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~~ 84 (387)
T d1k3ia3 22 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISMD 84 (387)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEEC
T ss_pred cEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeec----------------CCCCCCcccceeEEEEe
Confidence 34445556787 66666642 1 477899988764321 01122344444567889
Q ss_pred cCCCEEEEEeCC-CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC------CeEEEEe-cCCCeE
Q 001190 416 PDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKL 487 (1128)
Q Consensus 416 pdg~~las~~~d-~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d------~~i~vWd-~~g~~~ 487 (1128)
+||++++.|+.+ ..+.+||..+..-.. ...+. ....-..++..+||+ +++.|+.+ ..+.+|| .++.-
T Consensus 85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~-~~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W- 159 (387)
T d1k3ia3 85 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQ-VARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW- 159 (387)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCS-SCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-
T ss_pred cCCcEEEeecCCCcceeEecCccCcccc-ccccc-ccccccceeeecCCc--eeeeccccccccccceeeeecCCCCce-
Confidence 999999998765 579999998865432 11121 122234677788998 67777643 3688999 44432
Q ss_pred EEecC----------CC------CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--C----C---CeEE
Q 001190 488 FNFEG----------HE------APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P----G---HWCT 542 (1128)
Q Consensus 488 ~~~~~----------h~------~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~----~---~~i~ 542 (1128)
..+.. +. .....+. ..+++.++.+..++.+.+++..+..-...... . . ..-.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG---WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE---CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE---eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence 22211 00 0000011 12455666666666666665544322211100 0 0 0111
Q ss_pred EEEEcCCCCeEEEeeeccCC----CceEEEEeCCC---CceeeEecc--ccCCceeEEEEeCCCCEEEEEECC-------
Q 001190 543 TMLYSADGSRLFSCGTSKDG----DSFLVEWNESE---GTIKRTYAG--FRKKSNGVVQFDTTQNHFLAVGED------- 606 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~----~~~i~~wd~~~---~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~d------- 606 (1128)
.+....+++.++.++..... .....+.+... ......... .....-......++++.++.|+.+
T Consensus 237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~ 316 (387)
T d1k3ia3 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 316 (387)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence 22223466677776642211 11223333222 111111111 111122345566888988888743
Q ss_pred ----CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 607 ----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 607 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
..+.+||.++.+....-........-....+.+||+.++.|+.
T Consensus 317 ~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 317 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899888765433221111001123446789999999874
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.68 E-value=0.028 Score=63.28 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=45.1
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
+.+.-||..+++.+-.... ..++..-.++-.|.++++|+.||.++.+|.++|+.+..+..
T Consensus 453 G~l~A~D~~TG~~~W~~~~----~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME----RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCceecccCC----CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 5688888888887655433 22222333455788899999999999999999999998884
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.67 E-value=0.0049 Score=66.08 Aligned_cols=261 Identities=13% Similarity=0.076 Sum_probs=133.2
Q ss_pred cceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCC
Q 001190 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNN 886 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~ 886 (1128)
..+||+.++.-.........+.......++.+||++++.|. ...+.+||..+..-...-... ...-...+..+ |++
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR 132 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence 34566666653322111111333445678889999999986 357999999877654322111 11234566677 889
Q ss_pred EEEEEeCC------CcEEEEecccceeee--ccc-------ccc-----cCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 887 IIAIGTED------STIHIYNVRVDEVKS--KLK-------GHQ-----KRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 887 ~lasg~~d------g~v~iwd~~~~~~~~--~l~-------~h~-----~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
+++.|+.+ ..+.+||..+.+-.. ... .+. +.-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 99988753 368999988764211 110 011 0111233345777778777777777877777
Q ss_pred CcccceeEEeecCCCCC--CCccEEEE-cCCCCEEEEEe--c-------CeEEEEecCCccc---ccccccCCCCCCCeE
Q 001190 947 WEKRKSVTIHIPAGKTP--TGDTRVQF-NADQVRMLVVH--E-------TQLAIYDASKMER---IRQWTPQDALSAPIS 1011 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~--~~v~~v~~-s~d~~~l~~~~--d-------~~i~v~d~~~~~~---~~~~~~~~~h~~~v~ 1011 (1128)
................. .....+.+ ..+++.++.+. + ....+.+...... .........+...-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 292 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH 292 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence 54332221111111111 11122333 34566666642 1 1233333332111 010000000122233
Q ss_pred EEEEeeCCCEEEEEecCC-----------cEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001190 1012 CAVYSCNSQLVFATFCDG-----------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~ 1080 (1128)
+....+||+++++|+.+. .+.+||.++.+-. .+.. ++.... .|.. ....+ |+++++.|
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~---~~~~R~--~Hs~----a~l~~-dG~v~v~G 361 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNP---NSIVRV--YHSI----SLLLP-DGRVFNGG 361 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCC---CSSCCC--TTEE----EEECT-TSCEEEEE
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE-ECCC---CCCccc--ceEE----EEECC-CCEEEEEe
Confidence 556668999988887431 4789999887532 2221 111111 2221 22235 68899888
Q ss_pred EC
Q 001190 1081 LT 1082 (1128)
Q Consensus 1081 ~~ 1082 (1128)
+.
T Consensus 362 G~ 363 (387)
T d1k3ia3 362 GG 363 (387)
T ss_dssp CC
T ss_pred CC
Confidence 84
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=0.036 Score=53.93 Aligned_cols=231 Identities=13% Similarity=0.167 Sum_probs=147.9
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++-.+|..+ +||.-+ ..++.|+|+++.+.+.... ....|.--.|-.+. .|+-.+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSSS-EEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCCC-EEEEEc-CC
Confidence 344578877 666654 5689999999988875411 13367777776443 555554 34
Q ss_pred eEEEEEccCCCcceeceeecccc----cceeEEEEecCCCeEEEEEe--cC----CCeEEEEecCCCeEEEecCCCCCeE
Q 001190 429 LIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTC--GD----DKLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~fs~d~~~~~l~s~--s~----d~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
.|.-|+++.... +...+..|. ..|..-..+++++++ +++| .. .|.+.+|..+.+.-+.+.||.+...
T Consensus 123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccCcCccccceeeeeE
Confidence 699999965432 222344453 367777888889963 3332 11 3678899988888899999988777
Q ss_pred EEeccCCCCccEEEE-Ee---ccCcEEEEecCCCCc-ee-------eec----CCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 499 SICPHHKENIQFIFS-TA---IDGKIKAWLYDTMGS-RV-------DYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s-~~---~dg~i~~wd~~~~~~-~~-------~~~----~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.+........|++ +. ..+.+++-++..... .. .+. ..+.-..++.+|+.-..+...+ .
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT----K 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----K 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE----T
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe----c
Confidence 776543332223333 22 236788888765321 11 111 1134566788888887777776 4
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
-|.+++||+.++.++..-+-..+ .+...+-..+..-+++...+|.|.-
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEEE
Confidence 89999999999998877665544 5665555666666777777776653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.61 E-value=0.014 Score=65.63 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=44.2
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|.|.-+|+.+++.+-+.... .+..+-.++-.|.++++|+.||.++-+|.++|+.+..+..
T Consensus 444 G~l~AiD~~TG~~~W~~~~~----~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccEEEeccCCCceeeEcCCC----CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence 57888899988887655442 1111112334577888999999999999999999998883
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.58 E-value=0.016 Score=65.08 Aligned_cols=148 Identities=10% Similarity=0.031 Sum_probs=93.7
Q ss_pred cEEEEecccceeeecccccccCee---------EEEEcCCCC---EEEEEcCCCcEEEEECCCCcccceeEEeec-----
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRIT---------GLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP----- 958 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~----- 958 (1128)
.|.-.|+++++.+-.++.....+. -+.+..+++ .++.++.+|.+.++|-.+|+.+........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 466668888887655543222221 122233443 677788999999999999987643321100
Q ss_pred ------------------------CCCC-CCCccEEEEcCCCCEEEEEe-------------------------------
Q 001190 959 ------------------------AGKT-PTGDTRVQFNADQVRMLVVH------------------------------- 982 (1128)
Q Consensus 959 ------------------------~~~~-~~~v~~v~~s~d~~~l~~~~------------------------------- 982 (1128)
.... ...-...+++|+..++++..
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 0000 01123567788877776532
Q ss_pred ------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 ------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 ------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+.+.-+|+.+++.+-..... .+...-.++-.|.++++|+.||.++-+|.++|+.+..+..
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~----~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcccccceEEEeCCCCeEeeeccCC----CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 145778888888887665542 2222223455678899999999999999999999999884
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.058 Score=53.48 Aligned_cols=237 Identities=11% Similarity=0.006 Sum_probs=141.6
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~ 437 (1128)
||++ ....|+-.++++..... +......+..++|.+.++.|.-.. .++.|.--+++.
T Consensus 4 Ll~s--~~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~ 61 (266)
T d1ijqa1 4 LFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61 (266)
T ss_dssp EEEE--CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred EEEE--CCCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence 4444 34468888887654321 222445678999999888777665 456677666654
Q ss_pred CCcceece-eecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCCCCeEEEeccCCCCccEEEEE-
Q 001190 438 SNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIFST- 514 (1128)
Q Consensus 438 ~~~~~~~~-~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~- 514 (1128)
........ .+......+..+++.+.+.. +.++-...+.|.+.+.+|..... +.........+++++. .|.++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~ 139 (266)
T d1ijqa1 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW 139 (266)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence 22111111 12233456778999887775 34455667899999966655433 4444556788888764 33344443
Q ss_pred eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC-CceeEEEE
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQF 593 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~ 593 (1128)
+..+.|...+++.................+++.+.++.|..+-. ..+.|...++.............. .....+++
T Consensus 140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216 (266)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred CCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEEE
Confidence 23456766676655444444444456789999998888887643 467898889876544333333221 12334555
Q ss_pred eCCCCEEEEEE-CCCcEEEEECCCCeeeEEEe
Q 001190 594 DTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 594 ~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 624 (1128)
. +.+|+... .++.|+..+..++.....+.
T Consensus 217 ~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 217 F--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred E--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 4 45666654 66788888888877665554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.50 E-value=0.043 Score=59.16 Aligned_cols=248 Identities=10% Similarity=0.050 Sum_probs=133.4
Q ss_pred cEEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.+..+++||||++++.+-+.+| .|++.|+.+|+.+.. .+. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------~i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------ccc--cccccceEEcCCCCEE
Confidence 3456788999996655544444 899999999986531 011 1122568999999988
Q ss_pred EEEeCC----------------CeEEEEEccCCCcceeceeecccc--cceeEEEEecCCCeEEEEEec-CCCeEEEE--
Q 001190 422 GVAFTK----------------HLIQLYSYAGSNDLRQHSQIDAHV--GAVNDLAFAYPNKLLCVVTCG-DDKLIKVW-- 480 (1128)
Q Consensus 422 as~~~d----------------~~i~vwd~~~~~~~~~~~~~~~h~--~~v~~l~fs~d~~~~~l~s~s-~d~~i~vW-- 480 (1128)
+....+ ..|..|.+.+...-... .+.... ..+..+..+.|++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~-v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccccc-ccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 25777777765432111 233332 346677789999964333332 23344444
Q ss_pred e-cCCC--------eEEEecCCCCCeEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCce--ee-ecCCCCeEEEEE
Q 001190 481 E-LSGR--------KLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR--VD-YDAPGHWCTTML 545 (1128)
Q Consensus 481 d-~~g~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~--~~-~~~~~~~i~~~~ 545 (1128)
| .... ...........+..+.. . ++.+++... .++.|...++...... .. +..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4 2111 11222222222332221 1 222333322 2356666666654331 22 223333454444
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCee
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 619 (1128)
++..+.+|+.... .++...|++++..++.....+.... ..+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4455556665543 2356789999998887765544333 2455444445555444332 236788899988754
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.056 Score=53.62 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=129.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
+.....+.+++|.+.++++..+=...+.|.--+++....... ...+....-..+..+|+.+.++.
T Consensus 26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~---------------~~~~~~~~~~~p~glAvD~~~~~ 90 (266)
T d1ijqa1 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHSN 90 (266)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTTE
T ss_pred eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc---------------eEEEEeCCCCCcceEEEeeccce
Confidence 445567889999998875655544566666666543221110 11112333456778999887776
Q ss_pred EEEEe-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC-CCCCeE
Q 001190 421 VGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1128)
Q Consensus 421 las~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~-h~~~v~ 498 (1128)
|..+. ..+.|.+.+++...... .+.........+++.|....++..-.+..+.|...+.+|.....+.. .-....
T Consensus 91 lY~~d~~~~~I~v~~~~g~~~~~---~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~ 167 (266)
T d1ijqa1 91 IYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (266)
T ss_dssp EEEEETTTTEEEEEETTSSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred EEEEecCCCEEEeEecCCceEEE---EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence 66654 56789999998765332 23344566889999987664333333444556666677766655543 334568
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC--CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
++++.+.. +.+.++-...+.|...+++............ ....++++. +..|..... +.+.|...+..+++.
T Consensus 168 gl~iD~~~-~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~---~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 168 GITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI---INEAIFSANRLTGSD 241 (266)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCC
T ss_pred EEEeeccc-cEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEEC---CCCeEEEEECCCCcc
Confidence 88886543 3344454667889888887655544443332 245566665 345554432 467787778777766
Q ss_pred eeEeccc
Q 001190 577 KRTYAGF 583 (1128)
Q Consensus 577 ~~~~~~~ 583 (1128)
...+...
T Consensus 242 ~~~~~~~ 248 (266)
T d1ijqa1 242 VNLLAEN 248 (266)
T ss_dssp CEEEECS
T ss_pred eEEEEcC
Confidence 6555543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.47 E-value=0.0096 Score=67.14 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=95.0
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-eeecccc-cc-cCeeE
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKG-HQ-KRITG 920 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~-~~V~~ 920 (1128)
.++.++ +|.+.++|..+|+.+......... ..-.+.. .+..+..-. ...+. ....+.+ +. ..-..
T Consensus 329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~-~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~pg~~Gg~~w~~ 397 (573)
T d1kb0a2 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVN-WASGYDK-HGKPIGIAA---------ARDGSKPQDAVPGPYGAHNWHP 397 (573)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEECT-TSCEEECGG---------GGCTTSCEECSSCTTCSSCSSC
T ss_pred eeeeccccceeEEeccccccccccccccccc-ccccccc-ccceeeeee---------ccccccceEEeecccCCccccc
Confidence 344444 789999999999998776533221 1111222 222221110 00010 0011111 00 01124
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 1000 (1128)
++++|+..+++....+....++.....+...........+ .......+ .++.-.....-+.+.-||+.+++.+-..
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~ 473 (573)
T d1kb0a2 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG---TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (573)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG---GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred cccCCCcceEEeeccccceeeecccccccccCCCCccccc---cccccccc-cccCCCCCCCcccEEEeCCCCCceEeee
Confidence 6889998888887777777776655433211110000000 00000000 0000000001256788888888877665
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
... .+...=..+-.|.++++|+.||.++.+|.++|+.+..+..
T Consensus 474 ~~~----~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 474 EHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (573)
T ss_dssp EES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCC----CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence 543 2222223445788999999999999999999999998884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.43 E-value=0.023 Score=63.59 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-eeEEEEcCCCC-E
Q 001190 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN-I 929 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-~ 929 (1128)
|.|.-||+.+++.+........ ...-.++- .+.+++.|+.||.++-+|..+|+.+-+++-.... -.-+.+..||+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4688899999999877653221 11112222 4567888999999999999999999777643221 11255666886 5
Q ss_pred EEEE
Q 001190 930 LVSS 933 (1128)
Q Consensus 930 l~s~ 933 (1128)
|+..
T Consensus 516 v~v~ 519 (560)
T d1kv9a2 516 VAIM 519 (560)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.39 E-value=0.014 Score=60.31 Aligned_cols=190 Identities=9% Similarity=0.070 Sum_probs=123.0
Q ss_pred cCCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCC-CCCEEEEEeCCC------------------cEE
Q 001190 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQ-DNNIIAIGTEDS------------------TIH 898 (1128)
Q Consensus 841 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~-d~~~lasg~~dg------------------~v~ 898 (1128)
+||+++.+.. +++|.+-|+.+.++.+.+... ...+..+...+. ...+++.++.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 3899999987 688999999999987755432 334566665431 445666665422 366
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC--------------------------------------cEE
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--------------------------------------QLC 940 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg--------------------------------------~i~ 940 (1128)
++|..+.+....+..- +....+++++||+++++.+.+. -+.
T Consensus 177 ~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 7888888776665432 3466899999999999876431 123
Q ss_pred EEECCCC---cccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccccc--------ccccCCCCC
Q 001190 941 VWSIDTW---EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIR--------QWTPQDALS 1007 (1128)
Q Consensus 941 iwd~~~~---~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~--------~~~~~~~h~ 1007 (1128)
+-|.... ..+..++.. .....+.++|||++++++. +..+.|+|+++..... .........
T Consensus 256 VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred eecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 3343321 111112222 4456799999999999986 8999999997533211 111111114
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
-.-..-+|..+|.-..+-.-|..|.-|++..
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecch
Confidence 4556778888775444566899999999854
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.33 E-value=0.019 Score=64.53 Aligned_cols=194 Identities=11% Similarity=0.071 Sum_probs=109.4
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCC----------CCe-EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE----------APV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~----------~~v-~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 534 (1128)
.|+.++.++.|.-+| .+|+.+-++.... ..+ ..+.+. ...++.++.|+.+.-.|.++++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceecc
Confidence 356677788888999 8898887664211 011 111211 135777788888888888888877655
Q ss_pred cCCCCeE--EEEEEcC--CCCeEEEeeec--cCCCceEEEEeCCCCceeeEeccccC-----------------------
Q 001190 535 DAPGHWC--TTMLYSA--DGSRLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK----------------------- 585 (1128)
Q Consensus 535 ~~~~~~i--~~~~~s~--~g~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------- 585 (1128)
....... ..+.-.| -+..++++... ....+.|+-+|..+|+.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 4322110 0000011 12334443321 12356899999999999887643210
Q ss_pred -------Cce-eEEEEeCCCCEEEEEEC-------------------CCcEEEEECCCCeeeEEEecCCCCC-------C
Q 001190 586 -------KSN-GVVQFDTTQNHFLAVGE-------------------DSQIKFWDMDNVNILTSTDAEGGLP-------N 631 (1128)
Q Consensus 586 -------~~v-~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~-------~ 631 (1128)
..+ ...++.++...++.+.. ...|.-.|.++++.....+...+.. +
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 23566676666665431 1246677888888877665433210 1
Q ss_pred cceEEEcCCC---CEEEEEEcCCcEEEEEcccCccc
Q 001190 632 LPRLRFSKEG---NLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 632 v~~v~~sp~~---~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
........++ ..++.++.+|.+.++|..+++..
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~ 350 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccc
Confidence 1111122233 35677788999999999998544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.29 E-value=0.22 Score=55.58 Aligned_cols=81 Identities=6% Similarity=-0.052 Sum_probs=55.0
Q ss_pred CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEE
Q 001190 936 DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAV 1014 (1128)
Q Consensus 936 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~ 1014 (1128)
.|.|.-+|+.+|+..-...... +...-..+..|.++++++ |+.++.+|.++|+.+-.+..... ..-.-+.
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~--~~~~P~t 535 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG--IVSPPIT 535 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEE
T ss_pred CCeEEEEcCCCCcEEeecCCCC-------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC--ccccCEE
Confidence 3678889999998776665442 111112345566777775 99999999999999988876542 2223367
Q ss_pred EeeCCC-EEEEE
Q 001190 1015 YSCNSQ-LVFAT 1025 (1128)
Q Consensus 1015 ~s~dg~-~l~t~ 1025 (1128)
|..||+ |+++.
T Consensus 536 y~~~G~qYv~i~ 547 (582)
T d1flga_ 536 WEQDGEQYLGVT 547 (582)
T ss_dssp EEETTEEEEEEE
T ss_pred EEECCEEEEEEE
Confidence 788996 56543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.26 E-value=0.09 Score=58.64 Aligned_cols=237 Identities=13% Similarity=0.061 Sum_probs=133.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEec------CCCeEEEEe-cCCCeEEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd-~~g~~~~~ 489 (1128)
+..|+.++.|+.+.--|.++|+.+-.......+. ..++.--...++. ++.+. .+|.|+-+| .+|+.+.+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe---EEEeeccccccccCcEEEEECCCCcEEEE
Confidence 3466778889988888999998654332211111 1222222233454 33333 368899999 99999876
Q ss_pred ecCCC-------------------------------------CCeE-EEeccCCCCccEEEEEec---------------
Q 001190 490 FEGHE-------------------------------------APVY-SICPHHKENIQFIFSTAI--------------- 516 (1128)
Q Consensus 490 ~~~h~-------------------------------------~~v~-~~~~~~~~~~~~l~s~~~--------------- 516 (1128)
+.... +.++ ..++.+ ...+++.+..
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~--~~g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch--hcCeeeeecccccCccccccccccc
Confidence 53211 1121 112222 2234443332
Q ss_pred -cCcEEEEecCCCCceeeecCCCC---------eEEEEEEcCCCCe---EEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTMLYSADGSR---LFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 517 -dg~i~~wd~~~~~~~~~~~~~~~---------~i~~~~~s~~g~~---l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
...+.-.|.++++....++...+ ......+..+|+. ++..+ .++.++++|..+|+.+...+..
T Consensus 270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~----k~G~l~vlDr~tG~~i~~~~~~ 345 (571)
T d2ad6a1 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID----RNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC----TTSEEEEEETTTCCEEEEEESS
T ss_pred cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc----ccceEEEEecCCCcEeeeeccC
Confidence 23456667777777776654322 1112222334442 22332 5889999999999877432211
Q ss_pred c-------------------------------------C-CceeEEEEeCCCCEEEEEECC-------------------
Q 001190 584 R-------------------------------------K-KSNGVVQFDTTQNHFLAVGED------------------- 606 (1128)
Q Consensus 584 ~-------------------------------------~-~~v~~~~~~~~~~~l~~~s~d------------------- 606 (1128)
. + ..-...+++|+...++....+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 425 (571)
T d2ad6a1 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence 0 0 001125677776666653322
Q ss_pred ------------------CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccc
Q 001190 607 ------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 607 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
|.|.-+|+.+++.+........ ..+-.++-.+.++++|+.||.++.+|.++++.+.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~ 500 (571)
T d2ad6a1 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 4677888889988877654322 12222233466888899999999999999965543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.25 E-value=0.032 Score=60.24 Aligned_cols=247 Identities=9% Similarity=0.021 Sum_probs=126.6
Q ss_pred CCcceEEEEEccCCCEEEEEe-CC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC------
Q 001190 405 VPISVSRVAWSPDGNYVGVAF-TK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------ 473 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~-~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~------ 473 (1128)
+.-.+..+++||||+++|.+- .+ -.|++.|+.+|+.+.. .+. ......++|++|++. ++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence 444556678999999999653 23 3599999999986542 121 122357899999995 3333211
Q ss_pred ---------CCeEEEEe-cCCC--eEEEecCCCC--CeEEEeccCCCCccEEEEEec---cCcEEEE--ecCCCCce---
Q 001190 474 ---------DKLIKVWE-LSGR--KLFNFEGHEA--PVYSICPHHKENIQFIFSTAI---DGKIKAW--LYDTMGSR--- 531 (1128)
Q Consensus 474 ---------d~~i~vWd-~~g~--~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~---dg~i~~w--d~~~~~~~--- 531 (1128)
...|..|. -++. ....+..... .+..+.. +.++++++.... +....+| ++......
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 12466665 2221 2233333333 3444444 346677654332 3344455 33322111
Q ss_pred -----eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee--eEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 532 -----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 532 -----~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
............+. .+|..++..+.....++.|...++...... ..+-.+....+..-.+...+++|+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYDYVT--NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeecccccceEEEe--cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 11111122222222 233334333322334577777777654321 233333322344334444556676654
Q ss_pred -CC--CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 605 -ED--SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 605 -~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
.+ ..|++++..++.......... ..+..+...++...+..... -.++.-+|+.++.
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 44 458899998887655543322 24544544555554444332 2678888887763
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.25 E-value=0.25 Score=55.15 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=46.3
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|.+.-+|+.+++.+-..... .++..-.++-.|.++++|+.||.++-+|.+||+.+.....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 56888888888887666543 2223223456788999999999999999999999998884
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.07 E-value=0.16 Score=56.67 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeeccccc-ceeEEEEecCCCeEEEEEec------CCCeEEEEe-cCCCeEEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG-AVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~-~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd-~~g~~~~~ 489 (1128)
+.+++.++.|+.|.-.|.++|+.+-....-..+.. .++.--..-++. ++.+. ..|.|+-+| .+|+.+-+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCe---EEEeeccccccccCceEEEECCCCcEEEE
Confidence 34688888899998889999987654321111111 222211122443 44443 248999999 99999876
Q ss_pred ecCCC-------------------------------------CCeE-EEeccCCCCccEEEEEec---------------
Q 001190 490 FEGHE-------------------------------------APVY-SICPHHKENIQFIFSTAI--------------- 516 (1128)
Q Consensus 490 ~~~h~-------------------------------------~~v~-~~~~~~~~~~~~l~s~~~--------------- 516 (1128)
+.... ..++ .+++.+ ...+++.+..
T Consensus 198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~--~~~lvy~~tg~~~p~~~~~r~g~n~ 275 (596)
T d1w6sa_ 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNK 275 (596)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred eeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc--CCCeeeccccccccccccccccccc
Confidence 53210 1111 112222 2234444432
Q ss_pred -cCcEEEEecCCCCceeeecCCCC---------eEEEEE-EcCCCC---eEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTML-YSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 517 -dg~i~~wd~~~~~~~~~~~~~~~---------~i~~~~-~s~~g~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
...|.-.|+++++....++...+ ....+. ...+|+ .++... .++.++++|..+|+++...+.
T Consensus 276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~----k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD----RNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC----TTSEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc----cccceeeecCCCCceeeeccc
Confidence 23466678888887776554322 111111 234554 233332 588899999999987754321
Q ss_pred ccC--------------------------------------CceeEEEEeCCCCEEEEEEC-------------------
Q 001190 583 FRK--------------------------------------KSNGVVQFDTTQNHFLAVGE------------------- 605 (1128)
Q Consensus 583 ~~~--------------------------------------~~v~~~~~~~~~~~l~~~s~------------------- 605 (1128)
... ..-...+++|+...++....
T Consensus 352 ~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~ 431 (596)
T d1w6sa_ 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (596)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccc
Confidence 100 00012356666555544321
Q ss_pred --------------------CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccc
Q 001190 606 --------------------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1128)
Q Consensus 606 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1128)
-|.|.-||+.+++.+....... ++..-.++-.+.++..|+.||.++.+|..+++.+.
T Consensus 432 ~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC---CCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence 1568888988998877654332 22333334467788889999999999999995554
Q ss_pred c
Q 001190 666 R 666 (1128)
Q Consensus 666 ~ 666 (1128)
+
T Consensus 509 ~ 509 (596)
T d1w6sa_ 509 K 509 (596)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.71 E-value=0.17 Score=51.53 Aligned_cols=266 Identities=9% Similarity=0.134 Sum_probs=138.4
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcC-----CCCCEEEEEe--CC--CcEEEEeccc-ceeeec
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP-----QDNNIIAIGT--ED--STIHIYNVRV-DEVKSK 910 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~-----~d~~~lasg~--~d--g~v~iwd~~~-~~~~~~ 910 (1128)
+..+++... .+-|.+||+. |+.+..+. .+++..+..-. ....-+++++ .+ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 445555555 4559999995 77777764 45666665442 0222344554 22 3577887752 222222
Q ss_pred cccc-------ccCeeEEEE--cCC-CC-EEEEEcCCCcEEEEECCC---CcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 911 LKGH-------QKRITGLAF--STS-LN-ILVSSGADAQLCVWSIDT---WEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 911 l~~h-------~~~V~~l~~--s~d-~~-~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+... ...+.++++ ++. |. +++....+|.+..|.+.. +... ...+.... ....+..++++++..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~-~~lvr~f~--~~~q~EGCVvDde~~ 192 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYIS-GKKVRAFK--MNSQTEGMAADDEYG 192 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEE-EEEEEEEE--CSSCEEEEEEETTTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCcee-eEeeeccC--CCCccceEEEeCCCC
Confidence 2211 124667777 554 44 566677889998887743 2221 12222111 126788999999999
Q ss_pred EEEEEe-cCeEEEEecCCc--c---cccccccCCCCCCCeEEEEEee--CCC-EEEEE-ecCCcEEEEecCCC-ceEEEe
Q 001190 977 RMLVVH-ETQLAIYDASKM--E---RIRQWTPQDALSAPISCAVYSC--NSQ-LVFAT-FCDGNIGVFDADTL-RLRCYI 1045 (1128)
Q Consensus 977 ~l~~~~-d~~i~v~d~~~~--~---~~~~~~~~~~h~~~v~~l~~s~--dg~-~l~t~-~~dg~i~vwd~~~~-~~~~~~ 1045 (1128)
.|.++. +..+..+++... . .+..... ......+..|++-. +++ ||+++ -.+++..|||..+. +.+..+
T Consensus 193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred cEEEecCccceEEEEeccCCCccceeeecccC-ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 999986 455655555421 1 1111111 11256777777543 444 55544 47889999999874 566555
Q ss_pred CCCCC-CCCcccCCCCccceEEEEEecCC-CCEEEEEECCCc---------EEEEcCCCCCCCcccCCCCCCCccCCCCC
Q 001190 1046 APSTY-LSPSVLNGSQTVYPLVVAAHPLE-PNQFAIGLTDGS---------VKVMEPSESEGKWGVSPPVDNGILNSRTT 1114 (1128)
Q Consensus 1046 ~~~~~-~~~~~~~~~~~~~~~~~~~~p~~-~~~l~s~~~dg~---------i~iWd~~~~~~~w~~~~p~~~~~~~~~~~ 1114 (1128)
.-... ....+ .+.+.+.+++..+.+.- ..+|++=..++. .++-+..+=..+-...+..+++-.+++++
T Consensus 272 ~i~~~~~iDgv-s~TDGi~v~~~~lg~~fp~Gl~VvqDg~N~~~~~~~~qNFK~v~w~~I~~~l~l~~~~~~~~~pr~~~ 350 (353)
T d1h6la_ 272 QITDGPETDGT-SDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVPWERIADKIGFHPQVNKQVDPRKMT 350 (353)
T ss_dssp EECCCSSSCCC-CSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEETHHHHGGGTCCCCTTSCCCTTSCC
T ss_pred EEecCCCcCcc-ccCchheEEcccCCCCCCCeeEEEEcCCcccCCcccCCceEEeeHHHHHHhhCCCcccccccCCCCCC
Confidence 42111 11111 12333444444443321 245555444332 44443332222222234446666666665
Q ss_pred C
Q 001190 1115 S 1115 (1128)
Q Consensus 1115 ~ 1115 (1128)
+
T Consensus 351 ~ 351 (353)
T d1h6la_ 351 D 351 (353)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.00082 Score=49.89 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC--HHHHHHHhhccCHHHHHHHHcC
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSG 59 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1128)
++|+.+-|++||..+||.+++.+|.+|++++++ ...-...+++-.|..++.+-.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 589999999999999999999999999998876 5555666777888665554433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=1.2 Score=45.64 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=132.6
Q ss_pred CCCeeEEEeccCCCeEEEEeCCeEEEEECCCc-----------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 001190 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~i 899 (1128)
.....-+++++...+++.|+...+.|..+..- ...... ....|..++|+. + .|+.. .++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence 34567789999888998888667888764211 111111 123688999975 3 34444 4566777
Q ss_pred EecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeE---EeecCCCCCCCccEEEEcCCCC
Q 001190 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT---IHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 900 wd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
++..+-........-..++..+.++|. .++....++.+.++++..++...... .... ...+.+++|++.|+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~----~~~~~~v~ws~kgk 183 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV----TNSQLAVLLKDRSF 183 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE----CSSEEEEEETTSCE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe----cCCceEEEEeCCcE
Confidence 776653322222223456778888775 45666678999999999876432211 0011 15577888888888
Q ss_pred EEEEEecCeEEEE-ecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe------cCC-----cEEEEecCCCceEEE
Q 001190 977 RMLVVHETQLAIY-DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF------CDG-----NIGVFDADTLRLRCY 1044 (1128)
Q Consensus 977 ~l~~~~d~~i~v~-d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~------~dg-----~i~vwd~~~~~~~~~ 1044 (1128)
.++++.++...+. ++.... .+.........|.++.|-.+..++++=+ +|+ .++|-....+.....
T Consensus 184 q~v~~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~~~~~~~~~ii~~~~~~~~f~ 260 (381)
T d1xipa_ 184 QSFAWRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQ 260 (381)
T ss_dssp EEEEEETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEE
T ss_pred EEEEeCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEECCCccccCcCCccceEEEEEecCCCCccee
Confidence 8887755444332 222211 1222111255788999987777666432 222 344544444433222
Q ss_pred eCCCCCCCCcccCCCCccceEE-EEEecCCCCEEEEEECCC-cEEEEc
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLV-VAAHPLEPNQFAIGLTDG-SVKVME 1090 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~l~s~~~dg-~i~iWd 1090 (1128)
-......+-....+.+.-+... -.|.|+..++++.++... .|.++.
T Consensus 261 ~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~ 308 (381)
T d1xipa_ 261 ETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWD 308 (381)
T ss_dssp EESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred ccccccCCccccccCccEEEEEeccccccCCcEEEEeccCcceeeEee
Confidence 1111111111111223333333 467775555666665544 366663
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.36 E-value=0.22 Score=51.04 Aligned_cols=183 Identities=9% Similarity=0.099 Sum_probs=105.2
Q ss_pred eeEEEeccCCCeEEEEe-------------CCeEEEEECCCceEE-EE--eeCCC-----CCeeEEEE--cCCCCC-EEE
Q 001190 834 VPCIALSKNDSYVMSAT-------------GGKISLFNMMTFKVM-TT--FMSPP-----PASTFLAF--HPQDNN-IIA 889 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~-------------dg~i~vwd~~~~~~~-~~--~~~~~-----~~v~~l~~--s~~d~~-~la 889 (1128)
...++..|||..+++++ .|.|.++|+.+.+.. .. +.+.. -....+.+ .. +++ +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence 45688889998777653 278999998765332 12 22111 11233333 33 444 444
Q ss_pred EEe---CCCcEEEEecccce--e--eecccc-cccCeeEEEEcCCCCEEEEEcC---------------CCcEEEEECCC
Q 001190 890 IGT---EDSTIHIYNVRVDE--V--KSKLKG-HQKRITGLAFSTSLNILVSSGA---------------DAQLCVWSIDT 946 (1128)
Q Consensus 890 sg~---~dg~v~iwd~~~~~--~--~~~l~~-h~~~V~~l~~s~d~~~l~s~~~---------------Dg~i~iwd~~~ 946 (1128)
+.. ...+|.+|++.... . +..+.. .....+.+++..++.+++|-.. -+...+|..+.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 442 45678888886432 1 112221 1234688999999998888421 12345555555
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEee-CCCEEE
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC-NSQLVF 1023 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1023 (1128)
++..... ... .....|+++||+++|+++. .+.|++|++............. -......+.+.+ +|.+.+
T Consensus 196 ~~~~~~~-~~l------~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 196 NDVRVVA-EGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp SCEEEEE-EEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred CceEEEc-CCC------CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEE
Confidence 4432111 111 5678999999999998875 7889999987544332222111 155677888876 455444
Q ss_pred EE
Q 001190 1024 AT 1025 (1128)
Q Consensus 1024 t~ 1025 (1128)
.+
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.73 E-value=1.4 Score=44.39 Aligned_cols=188 Identities=13% Similarity=0.173 Sum_probs=109.9
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccC----CCCccEEEEEec--c--CcEEEEecCCCCceee-ecCC
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH----KENIQFIFSTAI--D--GKIKAWLYDTMGSRVD-YDAP 537 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~~wd~~~~~~~~~-~~~~ 537 (1128)
+++.....+-|.+||.+|+.+..+. .++++.+..-. ......++.++. + .+|.+|.++....... +...
T Consensus 42 lI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 5666666667999999899998875 35666665321 112223445542 2 3688888764433222 2211
Q ss_pred -------CCeEEEEEE--cCC-CCeEEEeeeccCCCceEEEEeCC---CC----ceeeEeccccCCceeEEEEeCCCCEE
Q 001190 538 -------GHWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 538 -------~~~i~~~~~--s~~-g~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
...++.+|+ ++. |...+.... .++.+..|.+. .+ +.++.+.... .+..|.+....+.|
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~L 194 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGSL 194 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCcE
Confidence 123566666 665 544444442 46777777652 23 3455555433 57789999999999
Q ss_pred EEEECCCcEEEEECCC-----CeeeEEEecCCCCCCcceEEEcC--C--CCEEEEEEcCCcEEEEEcccC
Q 001190 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--E--GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~sp--~--~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.+-++..|+.++.+. +..+.......-...+..+++-. + |-+|++.-.+++..+|+..+.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999888777776542 22222222222234566776532 3 334444445788999997654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.55 Score=46.60 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=106.1
Q ss_pred CeEEEEECCCceEEEE--eeCCCCCeeEEEEcCCCCCEEEEEeCC---------CcEEEEecccceeee--cccccccCe
Q 001190 852 GKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTED---------STIHIYNVRVDEVKS--KLKGHQKRI 918 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~~--~l~~h~~~V 918 (1128)
..+.+||..+.+-... +......- +++. - ++++++.|+.. ..+.+||..+.+... .+......-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 3488999998754332 22111111 2222 2 56777776631 357788877654322 211111111
Q ss_pred eEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe------cCeEE
Q 001190 919 TGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------ETQLA 987 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~------d~~i~ 987 (1128)
.++. .+++.++.++.++. ...+|..+..... .. .......-..+... ++..++.+. ...+.
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~ 167 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VA--PMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE 167 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE---CC--CCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCcccc---cc--ccccccccceeeee-eecceEecCcccccccceEE
Confidence 1222 25666666655443 4456666543211 11 11110111222222 334444431 34578
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCCCCCcccCCCCcc
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
.||..+.+....-.... ... .......++++++.|+.+ ....++|..+.+...... .+.... .|
T Consensus 168 ~~d~~~~~~~~~~~~~~--~~~-~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r~--~~-- 236 (288)
T d1zgka1 168 CYYPERNEWRMITAMNT--IRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRRS--AL-- 236 (288)
T ss_dssp EEETTTTEEEECCCCSS--CCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCCB--SC--
T ss_pred Eeecccccccccccccc--ccc-cccccceeeeEEEecCccccccccceeeeeecceeeecccC----ccCccc--ce--
Confidence 88887665433222111 111 112223356666666544 356788887766543221 111111 11
Q ss_pred ceEEEEEecCCCCEEEEEECCCc-----EEEEcCCCCCCCcccCCCC
Q 001190 1063 YPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1063 ~~~~~~~~p~~~~~l~s~~~dg~-----i~iWd~~~~~~~w~~~~p~ 1104 (1128)
+++.. ++++++.|+.++. |.+||+.+.. |...++.
T Consensus 237 ---~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~ 276 (288)
T d1zgka1 237 ---GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRM 276 (288)
T ss_dssp ---EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEEC
T ss_pred ---EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE--EEECCCC
Confidence 12222 5688888876664 6788988864 9887554
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.14 Score=44.58 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=56.6
Q ss_pred HHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHHH
Q 001190 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1128)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1128)
++|.++-+.|+||+..+...+|..|+++.-.-+...+.+++++|..+....+..+++....+.. .+.+-..|+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 124 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 124 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence 9999999999999999999999999988655555567888999988877766665554443333 233334555
Q ss_pred HHHH
Q 001190 145 IELK 148 (1128)
Q Consensus 145 ~~l~ 148 (1128)
..|+
T Consensus 125 ~~L~ 128 (149)
T d2nxpa1 125 RHLQ 128 (149)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.97 E-value=6.9 Score=39.18 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=103.7
Q ss_pred cEEEEEEeCCCCcEEEEee-----------ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 346 TVISMDFHPSHQTLLLVGS-----------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.-..++..|||..++++|- ..|.|.++|+.+.+.... .+++ . ........+..| .+ ++.-
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~---~--~~~~~~~~f~Ph--Gi-~l~~ 106 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEI---I--GNTLDISSFNPH--GI-STFI 106 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEE---E--CSSSCGGGCCEE--EE-EEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEe---c--CCCCCCcceecc--ce-eEEE
Confidence 4456888999986666652 138888999876543221 1110 0 000000012222 22 1222
Q ss_pred ccCCC-EEEEEe---CCCeEEEEEccCCCc-ceeceeec-ccccceeEEEEecCCCeEEEEEec--C-------------
Q 001190 415 SPDGN-YVGVAF---TKHLIQLYSYAGSND-LRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG--D------------- 473 (1128)
Q Consensus 415 spdg~-~las~~---~d~~i~vwd~~~~~~-~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s--~------------- 473 (1128)
.+||+ +|++.. ...+|.+|++..+.. +.-..++. ......+++++..+|. +++|-. .
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence 45676 455553 356799999875442 22222222 2234578999999998 677731 1
Q ss_pred CCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcC-C
Q 001190 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSA-D 549 (1128)
Q Consensus 474 d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~-~ 549 (1128)
-++..+|..+++........-..-+.+++++ |+++| ++-+..++|+.|+++....... ...-....-.+.+.+ +
T Consensus 185 ~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~--d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~ 262 (340)
T d1v04a_ 185 LAWSFVTYYSPNDVRVVAEGFDFANGINISP--DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT 262 (340)
T ss_dssp CCCEEEEEECSSCEEEEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred CCceeEEEEcCCceEEEcCCCCccceeEECC--CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence 1233444422222333322334578889876 44455 5556778999998875543221 112344566777776 4
Q ss_pred CCeEEEe
Q 001190 550 GSRLFSC 556 (1128)
Q Consensus 550 g~~l~~~ 556 (1128)
|.+.+.+
T Consensus 263 g~lwva~ 269 (340)
T d1v04a_ 263 GDLWVGC 269 (340)
T ss_dssp CCEEEEE
T ss_pred CEEEEEE
Confidence 5444443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.78 E-value=4.1 Score=41.35 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=81.8
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
.|..++|+.| .|+...++.+..++..+.........-...+.++.+.| ..++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5888999755 57777788888898876555444444455678888877 356667779999999998875332211
Q ss_pred -----ccccCeeEEEEcCCCCEEEEEcCCCcEEEE-ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 913 -----GHQKRITGLAFSTSLNILVSSGADAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 913 -----~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
.-++.+.+++|++.|+.++++..++ ..+- ++..... +... ......+.+|.|-.+..++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~-----~~~p-~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSE-----LEEL-PVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHH-----HHTS-CTTTSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccc-----cCCC-cCCCcceeEEEEecCceEEEE
Confidence 1235577778887777777653322 1111 1111000 0000 011145678888877777665
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=88.52 E-value=0.22 Score=42.19 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=42.3
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchh
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENE 128 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1128)
.++|.++-+.|+||+..+..++|..|+++.-.... ...+++++|..+....+...++
T Consensus 26 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~ 82 (131)
T d2j4ba1 26 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENN 82 (131)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhH
Confidence 39999999999999999999999999987433332 3567777777766655444433
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=2.9 Score=40.89 Aligned_cols=187 Identities=14% Similarity=0.070 Sum_probs=85.7
Q ss_pred CCCeEEEEe-----C-----CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCc-----EEEEecccce
Q 001190 842 NDSYVMSAT-----G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST-----IHIYNVRVDE 906 (1128)
Q Consensus 842 dg~~la~~~-----d-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~-----v~iwd~~~~~ 906 (1128)
++++++.|+ + ..+.+||..+.+....-......-...+... ++++++.|+.++. ...++..+..
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~ 128 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 128 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc-ceeeEEecceecccccceeeeeccccCc
Confidence 566666553 1 3477888876654332111111111111222 5677777665444 3445655543
Q ss_pred eeeccc--ccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEE
Q 001190 907 VKSKLK--GHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1128)
Q Consensus 907 ~~~~l~--~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 979 (1128)
-...-. ...... ++... ++..++.++.+ ..+..||..+.+..... ..........++.. ++..++
T Consensus 129 ~~~~~~~~~~r~~~-~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~i~i 200 (288)
T d1zgka1 129 WHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-----AMNTIRSGAGVCVL-HNCIYA 200 (288)
T ss_dssp EEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-----CCSSCCBSCEEEEE-TTEEEE
T ss_pred cccccccccccccc-eeeee-eecceEecCcccccccceEEEeecccccccccc-----ccccccccccccce-eeeEEE
Confidence 221111 011111 12222 34555556543 45788888765422111 11111112223332 334444
Q ss_pred EE-e-----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-----EEEEecCCCc
Q 001190 980 VV-H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-----IGVFDADTLR 1040 (1128)
Q Consensus 980 ~~-~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-----i~vwd~~~~~ 1040 (1128)
.+ . -.....||..+......-... ......-+...++++++.|+.++. |.+||+++++
T Consensus 201 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 201 AGGYDGQDQLNSVERYDVETETWTFVAPMK---HRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ecCccccccccceeeeeecceeeecccCcc---CcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 43 2 135677887765543322221 122222222347888888775543 7899999865
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.83 E-value=10 Score=33.88 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=82.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC--CCCCeEEE--------eccCCCCccEEEEEec-cCcEEE
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG--HEAPVYSI--------CPHHKENIQFIFSTAI-DGKIKA 522 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~--h~~~v~~~--------~~~~~~~~~~l~s~~~-dg~i~~ 522 (1128)
|+-+...-|++. .+++|+......+|-.+|..+..+.. .-+-|+.+ .+.. ++..-++++.. .|.+++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~-g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG-GGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEE-TTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeec-CCcceEEEEecccCCEEE
Confidence 444444446666 56677766677777744544444421 11234443 2211 11122333332 344444
Q ss_pred EecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE-ecc-----ccCCceeEEEEeCC
Q 001190 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAG-----FRKKSNGVVQFDTT 596 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~-----~~~~~v~~~~~~~~ 596 (1128)
+ +...+.++...++++.+. ++.... -++....-+|.++++..+. ++. .....+.-+-+.|+
T Consensus 182 ~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd 248 (313)
T d2hu7a1 182 F-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD 248 (313)
T ss_dssp E-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred e-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence 4 445556777777776665 444332 2344444668887765432 221 12223444568999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 597 QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 597 ~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
++.++.+-.||.=.+|. +|+.+...
T Consensus 249 d~L~iiakrdG~s~lF~--nGk~in~p 273 (313)
T d2hu7a1 249 GRLAVVARREGRSAVFI--DGERVEAP 273 (313)
T ss_dssp SCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred CcEEEEEecCCchheee--cceEecCC
Confidence 99989999999999987 56665543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.35 E-value=8.7 Score=40.23 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee--eccc------ccccCeeEEEEcCC---CCEE-EEEc-----
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLK------GHQKRITGLAFSTS---LNIL-VSSG----- 934 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~V~~l~~s~d---~~~l-~s~~----- 934 (1128)
-...++|+|.| +++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+ ..++ ++..
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 34678999999 8998877656899999987776432 2111 11245678999986 2333 3221
Q ss_pred -CC----C--cEEEEECCCCcccce---eEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 935 -AD----A--QLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 935 -~D----g--~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
.+ . .+..+.......... ..+.............++|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G 162 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence 11 1 133333333221111 111111122224567899999998877754
|