Citrus Sinensis ID: 001197

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120-----

MVTQLEHHQQERPCPDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQEADDDVVHDDGGSDEGPVPEKASPVGSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKRDAERLSRLEEEARNQIETRKRKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHNDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRGNGWS

ccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccccEEEcHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHccccccEEEcccccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHcHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHcccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccc

cHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEHHHHHHccHHHHHcEEEEEEEcccccccccHHHHHHHHHHcccccEEEEcccHccccHHHHHHHHHHHcHHHHcccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHcccEEccccccccHHHHHHHHHHHHHcccccEEccccccccccHHHHHccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHcccccHEEEcccccccccHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccEEEEcccccccccccccccccccccccccccccccc

mvtqlehhqqerpcpdpverTKSLICALNfisrnlpvppdvydtvssiyygeqeadddvvhddggsdegpvpekaspvgstiscgsdlMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELeelpssrgeelQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMtcafpekqlfdwgmmrlrrplygvgdafateaddhfRKKRDAERLSRLEEEARNQIETRKRKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAvqrqkdskhvdgieplkdseddlldldasengtprdlhpeeddiidsdhnddsgdllegqrQYNSAIHSIEEkvteqptllqggeLRAYQLEGLQWMLSLFNNNLNgilademglgktIQTIALIAYLLenkgvtgphvivapkavlpnwinefstwaPSIAAvvydgrpdeRKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEwfnapfkdrgqvaltdEEQLLIIRRLHHVIRpfilrrkkdevekylpgksqvILKCDMSAWQKVYYQQVTDVgrvgldtgtgkskSLQNLSMQLRkccnhpylfvgeynmWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLndfkflrldgstkteeRGTLlkqfnapdspyFMFLLSTRagglglnlqtadtviifdsdwnpqmdQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRgtsslgtdvpserEINRLAARSDEEFWLFEKMDEERRQKENYRSRlmedhevpewaysapdnkeeqkgfekgfghesssitgkrkrkEVVYADTLSDLQWMKAVENgqdisklstrgkrreylpsegnesasnstgaekknldmkneifplasegtsedtfgsapkrlrferrnsessdiqsveksehkgvqgsglnghILTWNTHRKKRSSYVVqtsssdsrgqnsngrgngws

mvtqlehhqqerpcpdpveRTKSLICALNfisrnlpvppdVYDTVSSIYYGEQEADDDVVHDDGGSDegpvpekaspvgSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKeleelpssrgeELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAfateaddhfrkkrdaerlsrleeearnqietrkRKFFAEILNAVREFQVSIQASikrrkqrndgvqawhgrqrqratraEKLRfqalkaddqeaYMRLVKESKNERLTTLLEETNKLLVNLGaavqrqkdskhvdgieplkdseddlldldasengtprdlhpeeddiidsdHNDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREeffsergrfnvLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRlhhvirpfilrrkkdevekylpgksqviLKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKteergtllkqfnapdSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRahrigqkkevRVFVLVSVGSIEEVILERAKQKMGIDAKViqaglfnttstaqDRREMLKEIMRrgtsslgtdvpsereinrlaarsdeefwlfekmdeerrQKENyrsrlmedhevpewaysapdnKEEQKGFEKgfghesssitgkrkrkEVVYADTLsdlqwmkavengqdisklstrgkrreylpsegnesasnstgaekknlDMKNEIFPlasegtsedtfgsapkrlrferrnsessdiqsveksehkgvqgsglngHILTWNTHRKKRSSYvvqtsssdsrgqnsngrgngws

MVTQLEHHQQERPCPDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQEAdddvvhddggsdEGPVPEKASPVGSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCllelyglklaelQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKrdaerlsrleeearNQIETRKRKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKnerlttlleetnkllvnlGAAVQRQKDSKHVDGIEPLKDSEddlldldASENGTPRDLHPEEddiidsdhnddsgdLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRKKRssyvvqtsssdsrgqnsngrgngws

*********************KSLICALNFISRNLPVPPDVYDTVSSIYYG****************************************************************************************QTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATE*****************************RKFFAEILNAVREFQVSIQAS****************************************************LTTLLEETNKLLVNLGA*******************************************************************************TLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGR*******REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK*KSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWN*************IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNT******************************************FWLF***********************************************************VVYADTLSDLQWMKA**********************************************************************************************GHILTWN*******************************

********************TKSLICALNFISRNLPV*****************************************************************SMTGFGLTELRENRYQSHIQHRLKE***********LQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRR*********************************************AEILNAVREFQVSIQASIKR*******************************************ESKNERLTTLLEETNKLLVNLG************************************************************************EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKD*********EQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRV**********SLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI*********************MRR************REINRLAARSDEEFW*******************MEDHEVPEWAYSAPDNKEEQKGF***************KRKEVVYADTLSDL*****************************************************************************************************************************************

****************PVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQEADDDVVHDDGGSDEGPVPEKASPVGSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKRDAERLSRLEEEARNQIETRKRKFFAEILNAVREFQVSIQA************************RAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHNDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPD**************************EVVYADTLSDLQWMKAVENGQDISKLSTRGKRRE*****************KKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFE*********************GSGLNGHILTWNTHR****************************

************PCPDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYG****************************STISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKRDAERLSRLEEEARNQIETRKRKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDS********************************************DSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL*TDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEK*********TGKRKRKEVVYADTLSDLQWMKAVEN*****************************************************************************************L*GHILTWNTHRK***************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MVTQLEHHQQERPCPDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQEADDDVVHDDGGSDEGPVPEKASPVGSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRxxxxxxxxxxxxxxxxxxxxxxxxxFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHNDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRGNGWS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1125	2.2.26 [Sep-21-2011]
P22082		1703	Transcription regulatory	yes	no	0.810	0.535	0.399	0.0
Q9UTN6		1199	Chromatin structure-remod	yes	no	0.685	0.643	0.436	0.0
Q6DIC0		1577	Probable global transcrip	yes	no	0.539	0.384	0.517	0.0
P51531		1590	Probable global transcrip	yes	no	0.539	0.381	0.517	0.0
A7Z019		1606	Transcription activator B	no	no	0.553	0.387	0.508	0.0
Q3TKT4		1613	Transcription activator B	no	no	0.553	0.386	0.508	0.0
Q8K1P7		1613	Transcription activator B	no	no	0.553	0.386	0.508	0.0
P51532		1647	Transcription activator B	no	no	0.553	0.378	0.488	0.0
P32597		1359	Nuclear protein STH1/NPS1	no	no	0.794	0.657	0.396	0.0
O94421		1680	SWI/SNF chromatin-remodel	no	no	0.667	0.447	0.424	0.0

>sp\|P22082\|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1	Back alignment and function desciption

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/993 (39%), Positives = 596/993 (60%), Gaps = 81/993 (8%)

Query: 137  EELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVG 196
            E  +   L + Y L+L  LQ  VR  V    W + +        F   + ++R     V 
Sbjct: 523  ESTRENALYDYYALQLLPLQKAVRGHVLQFEWHQNSLLTNTHPNF---LSKIRN--INVQ 577

Query: 197  DAFATEADDHFRKKRDAERLSRLEEEARNQIETRKRKFFAEILNAVREFQVSIQASIKRR 256
            DA  T   +   K  +  +L R + EA  ++++  +       +A+ ++        KR 
Sbjct: 578  DALLT---NQLYKNHELLKLERKKTEAVARLKSMNK-------SAINQYNRRQDKKNKRL 627

Query: 257  KQRNDGVQAWHGRQRQRATRAEKL---RFQALKADDQEAYMRLVKESKNERLTTLLEETN 313
            K  +  +      +R    RAEK    R QALKA+D+EAY++L+ ++K+ R+T LL +TN
Sbjct: 628  KFGHRLIATHTNLERDEQKRAEKKAKERLQALKANDEEAYIKLLDQTKDTRITHLLRQTN 687

Query: 314  KLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHND 373
              L +L  AV+ Q+          +K++ +++ DL       P+            D   
Sbjct: 688  AFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDDLSM----VPKM----------KDEEY 733

Query: 374  DSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILAD 433
            D  D       YN A H I+E + +QP++L GG L+ YQ++GLQWM+SLFNN+LNGILAD
Sbjct: 734  DDDDDNSNVDYYNVA-HRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILAD 792

Query: 434  EMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPD 493
            EMGLGKTIQTI+L+ YL E K + GP++++ P + L NW +EF+ WAP++  + + G P+
Sbjct: 793  EMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPN 852

Query: 494  ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 553
            ERKA + +  +  G F+V++T ++ I+++R  L KV+W++MI+DEGHR+KN +  L+ T+
Sbjct: 853  ERKAKQAKIRA--GEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTL 910

Query: 554  -SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVA 609
             + Y    RL+LTGTP+QN+L ELW+LLNF+LP IFNSV++F+EWFN PF + G   ++ 
Sbjct: 911  NTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIE 970

Query: 610  LTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVG 669
            L++EE LL+IRRLH V+RPF+LRR K +VEK LP K + ++KC MSA Q++ YQQ+    
Sbjct: 971  LSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYR 1030

Query: 670  RVGLDTGTGKS----KSLQNLSMQLRKCCNHPYLFV---GEYNMWRK--EEIIRASGKFE 720
            R+ +     K     +   N  MQL+K CNHP++F     + N  R+  ++I R +GKFE
Sbjct: 1031 RLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFE 1090

Query: 721  LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 780
            LLDR+LPKL+ +GHRVL+F QMT++MDI+E +L+  + K+LRLDG TK++ER  LL+ FN
Sbjct: 1091 LLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFN 1150

Query: 781  APDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840
            APDS Y  F+LSTRAGGLGLNLQTADTVIIFD+DWNP  D QA+DRAHRIGQK EVR+  
Sbjct: 1151 APDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1210

Query: 841  LVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM--------RRGT 892
            L++  S+EEVILERA +K+ ID KVIQAG F+  ST++++  +L+ ++        +R +
Sbjct: 1211 LITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRES 1270

Query: 893  SSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKE---NYRSRLMEDHEVPEWAYSA 949
                 +   + EIN + AR+DEE  +  +MDE+R +KE     +SRL+E  E+P+  YS 
Sbjct: 1271 GVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEKSELPD-IYSR 1329

Query: 950  PDNKEEQKGFEKGFGHESSSIT---GKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTR 1006
             D   E K  E     ES+++    G R+RK   Y D +S+ QW++  E   D  + + +
Sbjct: 1330 -DIGAELKREES----ESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDD--EKNDK 1382

Query: 1007 GKRREYLPSEGNESASNSTGAEK-KNLDMKNE---IFPLASE-------GTSEDTFGSAP 1055
              R++    E    A +  G  K +N+D  N+   I  +++E         ++D F S  
Sbjct: 1383 QARKQRTKKEDKSEAIDGNGEIKGENIDADNDGPRINNISAEDRADTDLAMNDDDFLSKK 1442

Query: 1056 KRLRFERRNSESSDIQSVEKSEHKGVQGSGLNG 1088
            ++    R   +   ++  E SE   ++ S + G
Sbjct: 1443 RKAGRPRGRPKKVKLEGSENSEPPALESSPVTG 1475

Involved in transcriptional activation. Catalytic component of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|Q9UTN6\|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1	Back alignment and function description

>sp\|Q6DIC0\|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1	Back alignment and function description

>sp\|P51531\|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2	Back alignment and function description

>sp\|A7Z019\|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1	Back alignment and function description

>sp\|Q3TKT4\|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1	Back alignment and function description

>sp\|Q8K1P7\|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1	Back alignment and function description

>sp\|P51532\|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2	Back alignment and function description

>sp\|P32597\|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STH1 PE=1 SV=1	Back alignment and function description

>sp\|O94421\|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1125
297737012		1110	unnamed protein product [Vitis vinifera]	0.975	0.988	0.788	0.0
359477501		1114	PREDICTED: transcription regulatory prot	0.981	0.991	0.783	0.0
224099763		1131	chromatin remodeling complex subunit [Po	0.988	0.983	0.769	0.0
224111230		1132	chromatin remodeling complex subunit [Po	0.968	0.962	0.740	0.0
356574396		1073	PREDICTED: transcription regulatory prot	0.942	0.987	0.763	0.0
356534230		1072	PREDICTED: transcription regulatory prot	0.943	0.989	0.761	0.0
356541302		1063	PREDICTED: transcription regulatory prot	0.937	0.992	0.755	0.0
449444997		1092	PREDICTED: transcription regulatory prot	0.961	0.990	0.747	0.0
357444343		1083	Chromatin remodeling complex subunit [Me	0.948	0.985	0.741	0.0
357480785		1063	Chromatin remodeling complex subunit [Me	0.938	0.993	0.731	0.0

>gi\|297737012\|emb\|CBI26213.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1768 bits (4580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1129 (78%), Positives = 986/1129 (87%), Gaps = 32/1129 (2%)

Query: 1    MVTQLEHHQQERPCPDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQEADDDVV 60
            MV QLE H    P  DPV++ K+LICALN ISRNLP+PPDV++ VSSIY+    ADD  +
Sbjct: 1    MVAQLESH----PTLDPVQKAKTLICALNLISRNLPLPPDVFNAVSSIYH----ADD--L 50

Query: 61   HDDGGSDEGPVPEKASPVGSTISCGSDLMSDFENALSKQRLKSMTGFGLTELRENRYQSH 120
             D    D    P +    G  IS G DL+ D ++AL KQR    +G  LT+ RENR QSH
Sbjct: 51   LDRADVDTLDTPSEKVSDGPGISGGGDLIIDLDDALVKQRPNCTSGIELTKSRENRLQSH 110

Query: 121  IQHRLKELEELPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQL 180
            IQHRL +LEELPS+RGE+LQTKCLLELYGLKL ELQSKVRSDVSSEYWLRM CA+P+KQL
Sbjct: 111  IQHRLTQLEELPSTRGEDLQTKCLLELYGLKLVELQSKVRSDVSSEYWLRMNCAYPDKQL 170

Query: 181  FDWGMMRLRRPLYGVGDAFATEADDHFRKKRDAERLSRLEEEARNQIETRKRKFFAEILN 240
            FDWGMMRLRRPLYGVGDAFA EADD FRKKRDAERLSRLEEE +N++ETRKRKFFAEILN
Sbjct: 171  FDWGMMRLRRPLYGVGDAFAMEADDQFRKKRDAERLSRLEEEEKNRLETRKRKFFAEILN 230

Query: 241  AVREFQVSIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKES 300
            AVREFQ+ +QAS+KRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMR+VKES
Sbjct: 231  AVREFQLQVQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKES 290

Query: 301  KNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLH 360
            KNERLT LL++TN LLV+LGAAVQRQK ++  DGIE LK  E DL DL AS++ TP DL 
Sbjct: 291  KNERLTMLLKKTNDLLVDLGAAVQRQKGAEQSDGIETLKSPEPDLPDLSASKSETP-DLL 349

Query: 361  PEED-DIIDSDH--NDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQ 417
            PEED +I+++D   N  +GDLLEGQRQYNS IHSI+EKVTEQP +LQGGELR YQLEGLQ
Sbjct: 350  PEEDVEILNTDPGPNGKTGDLLEGQRQYNSVIHSIQEKVTEQPAMLQGGELRPYQLEGLQ 409

Query: 418  WMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 477
            WMLSLFNNNLNGILADEMGLGKTIQTI+LIAYL+ENKGVTGPH+IVAPKAVLPNW+NEFS
Sbjct: 410  WMLSLFNNNLNGILADEMGLGKTIQTISLIAYLVENKGVTGPHLIVAPKAVLPNWVNEFS 469

Query: 478  TWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVD 537
            TWAPSIAAV+YDGR DERKA+REE   E G+FNVLITHYDLIMRD+ +LKK+ W YMIVD
Sbjct: 470  TWAPSIAAVLYDGRLDERKALREEISGE-GKFNVLITHYDLIMRDKAFLKKIDWHYMIVD 528

Query: 538  EGHRLKNHECALAKT-ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEE 596
            EGHRLKNHECALA+T +SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLP+IFNSV NFEE
Sbjct: 529  EGHRLKNHECALARTLVSGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVTNFEE 588

Query: 597  WFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSA 656
            WFNAPF DR  V+LTDEE+LLII RLHHVIRPFILRRKKDEVEKYLPGK+QVILKCDMSA
Sbjct: 589  WFNAPFADRSDVSLTDEEELLIIHRLHHVIRPFILRRKKDEVEKYLPGKTQVILKCDMSA 648

Query: 657  WQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW-RKEEIIRA 715
            WQK YY QVTD+GRVGLDTG+GKSKSLQNLSMQLRKCCNHPYLFVG+YN+W +KEE++RA
Sbjct: 649  WQKAYYHQVTDLGRVGLDTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNIWQKKEEMVRA 708

Query: 716  SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTL 775
            SGKFELLDRLLPKL+K+GHRVLLFSQMTRLMDILEIYL++N+ K+LRLDGSTKTEERGT 
Sbjct: 709  SGKFELLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTK 768

Query: 776  LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835
            LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE
Sbjct: 769  LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 828

Query: 836  VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL 895
            VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML+EIMRRGT+SL
Sbjct: 829  VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTNSL 888

Query: 896  GTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 955
            G DVPSEREINRLAARSDEEFW+FEKMDEERRQKENYRSRLME+HEVPEWAYS PD KEE
Sbjct: 889  GADVPSEREINRLAARSDEEFWMFEKMDEERRQKENYRSRLMEEHEVPEWAYSTPDGKEE 948

Query: 956  QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPS 1015
            +    KGF H++S ITGKR+RKEVVYAD+LSDLQWMKAVE+G+DIS+LS +GKRRE+LPS
Sbjct: 949  KS---KGFEHDASKITGKRRRKEVVYADSLSDLQWMKAVESGEDISRLSVKGKRREHLPS 1005

Query: 1016 EGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEK 1075
            E NES S+  G E+K L++++E   + SEGTSEDTF  APKRL+ E  NS+         
Sbjct: 1006 EANESDSDKIGGEQKVLELRSENVSMTSEGTSEDTFSLAPKRLKSEGANSDQR------- 1058

Query: 1076 SEHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRGNGW 1124
                   G   NGHI TW TH ++RSSYVVQ+SSSD+RGQNSN RGNGW
Sbjct: 1059 -----TGGGSWNGHIPTWQTHTRRRSSYVVQSSSSDARGQNSNSRGNGW 1102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477501\|ref\|XP_002281240.2\| PREDICTED: transcription regulatory protein SNF2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224099763\|ref\|XP_002311608.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222851428\|gb\|EEE88975.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224111230\|ref\|XP_002315787.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222864827\|gb\|EEF01958.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356574396\|ref\|XP_003555334.1\| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356534230\|ref\|XP_003535660.1\| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356541302\|ref\|XP_003539117.1\| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449444997\|ref\|XP_004140260.1\| PREDICTED: transcription regulatory protein SNF2-like [Cucumis sativus] gi\|449481192\|ref\|XP_004156109.1\| PREDICTED: transcription regulatory protein SNF2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357444343\|ref\|XP_003592449.1\| Chromatin remodeling complex subunit [Medicago truncatula] gi\|355481497\|gb\|AES62700.1\| Chromatin remodeling complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357480785\|ref\|XP_003610678.1\| Chromatin remodeling complex subunit [Medicago truncatula] gi\|355512013\|gb\|AES93636.1\| Chromatin remodeling complex subunit [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1125
TAIR\|locus:2150270		1064	CHR23 "chromatin remodeling 23	0.826	0.874	0.687	0.0
UNIPROTKB\|E1C2F7		1546	E1C2F7 "Uncharacterized protei	0.282	0.205	0.542	2.1e-188
UNIPROTKB\|A5PKK5		1554	SMARCA2 "SMARCA2 protein" [Bos	0.282	0.204	0.542	3e-188
UNIPROTKB\|E2RKP4		1556	SMARCA2 "Uncharacterized prote	0.282	0.204	0.542	3.1e-188
UNIPROTKB\|J9P5P2		1574	SMARCA2 "Uncharacterized prote	0.282	0.202	0.542	3.9e-188
UNIPROTKB\|E9PTG1		1597	Smarca2 "Protein Smarca2" [Rat	0.282	0.199	0.542	4.1e-188
UNIPROTKB\|P51531		1590	SMARCA2 "Probable global trans	0.282	0.2	0.542	4.8e-188
MGI\|MGI:99603		1577	Smarca2 "SWI/SNF related, matr	0.282	0.201	0.542	6.6e-188
UNIPROTKB\|D4AA07		1262	Smarca4 "Transcription activat	0.285	0.254	0.537	1.5e-187
RGD\|1302988		1597	Smarca2 "SWI/SNF related, matr	0.282	0.199	0.539	2.5e-187

TAIR\|locus:2150270 CHR23 "chromatin remodeling 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3318 (1173.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 650/946 (68%), Positives = 764/946 (80%)

Query:    87 DLMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCXXX 146
             DLMS+FE+AL +QRL   +G  L EL+E RY++ I +RL +LE LPS+RGE+LQ KC   
Sbjct:    69 DLMSEFEDALLQQRLNYESGSRLAELKETRYKNRIHNRLSQLEGLPSNRGEDLQEKCLLE 128

Query:   147 XXXXXXXXXQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDH 206
                      Q +VR +VS+EYWLR+ CA PE+QL+DWGMMRL R +YGVGD+F  EADD 
Sbjct:   129 LYGLKLQELQCRVRGEVSAEYWLRLNCADPERQLYDWGMMRLPRRMYGVGDSFVMEADDQ 188

Query:   207 FRKKXXXXXXXXXXXXXXNQIETRKRKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAW 266
             FR K              N IET +RKFFAE+LNAVREFQ+ IQAS +R KQRNDGVQAW
Sbjct:   189 FRNKRDAERLLRLEEEEKNLIETTQRKFFAEVLNAVREFQLQIQASHRRCKQRNDGVQAW 248

Query:   267 HGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKXXXXXXXXXXXXXXXXXXGAAVQRQ 326
             HG+QRQRATRAEKLR  ALK+DDQE YM+L KESK                  GAAVQRQ
Sbjct:   249 HGKQRQRATRAEKLRIMALKSDDQEEYMKLAKESKNEKLTLFLEETNKIFVSLGAAVQRQ 308

Query:   327 KDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHP-EEXXXXXXXXXXXXXXLLEGQRQY 385
             KD+K  +  + LK SE        S+   P D+ P ++              LLEG+RQ+
Sbjct:   309 KDAKLSENTKLLKGSESDL-----SDVDAPEDVLPAQDIEIIDSDNNDDSNDLLEGERQF 363

Query:   386 NSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA 445
             N AIHSI+EKVT+QP+LLQGGELR+YQLEGLQWM+SL+NN+ NGILADEMGLGKTIQTIA
Sbjct:   364 NLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIA 423

Query:   446 LIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 505
             LIAYLLE+K + GPH+I+APKAVLPNW NEF+ WAPSI+A +YDG  ++R  +R      
Sbjct:   424 LIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAG- 482

Query:   506 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI-SGYQIQRRLLL 564
              G+FNVLITHYDLIMRD+ +LKK+ W YMIVDEGHRLKNHECALAKT+ +GY+I+RRLLL
Sbjct:   483 -GKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLL 541

Query:   565 TGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 624
             TGTPIQNSLQELWSLLNFLLP IFNS+ NFEEWFN PF + G  +LTDEE+LLII RLHH
Sbjct:   542 TGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHH 601

Query:   625 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ 684
             VIRPF+LRRKK EVEK+LPGK+QVILKCDMSAWQK+YY+QVTDVGRVGL +G GKSKSLQ
Sbjct:   602 VIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQ 661

Query:   685 NLSMQLRKCCNHPYLFVG-EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 743
             NL+MQLRKCCNHPYLFVG +YNM +K EI+RASGKFELLDRLLPKL+K+GHR+LLFSQMT
Sbjct:   662 NLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMT 721

Query:   744 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 803
             RL+D+LEIYL LND+ +LRLDGSTKT++RG LLKQFN PDSPYFMFLLSTRAGGLGLNLQ
Sbjct:   722 RLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQ 781

Query:   804 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 863
             TADT+IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS+GSIEEVILERAKQKMGIDA
Sbjct:   782 TADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDA 841

Query:   864 KVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMD 923
             KVIQAGLFNTTSTAQDRREML+EIM +GTSSLG DVPSEREINRLAAR++EEFW+FE+MD
Sbjct:   842 KVIQAGLFNTTSTAQDRREMLEEIMSKGTSSLGEDVPSEREINRLAARTEEEFWMFEQMD 901

Query:   924 EERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYAD 983
             EERR+KENY++RLME+ EVPEWAY++ + +E++   +  FG    S+TGKRKRKE VY+D
Sbjct:   902 EERRKKENYKTRLMEEKEVPEWAYTS-ETQEDKTNAKNHFG----SLTGKRKRKEAVYSD 956

Query:   984 TLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAE 1028
             +LSDLQWMKA+E+  +D SK+S + KR +      N S + +  +E
Sbjct:   957 SLSDLQWMKAMESEDEDASKVSQKRKRTDTKTRMSNGSKAEAVLSE 1002

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0004386 "helicase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB\|E1C2F7 E1C2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PKK5 SMARCA2 "SMARCA2 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RKP4 SMARCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5P2 SMARCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTG1 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P51531 SMARCA2 "Probable global transcription activator SNF2L2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:99603 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|D4AA07 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1302988 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	0.824
3rd Layer	3.6.4	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019937001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1077 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1125
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-177
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-113
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-111
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	9e-29
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	1e-28
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	7e-23
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	2e-22
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	9e-21
pfam11496		279	pfam11496, HDA2-3, Class II histone deacetylase co	2e-09
COG0513		513	COG0513, SrmB, Superfamily II DNA and RNA helicase	8e-07
PTZ00110		545	PTZ00110, PTZ00110, helicase; Provisional	1e-06

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  546 bits (1408), Expect = e-177
 Identities = 251/529 (47%), Positives = 354/529 (66%), Gaps = 24/529 (4%)

Query: 395 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 454
           ++  QP+ ++G ++R YQL GL W++ L+ N +NGILADEMGLGKT+QTI+L+ YL E +
Sbjct: 158 RLLVQPSCIKG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYR 216

Query: 455 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLIT 514
           G+TGPH++VAPK+ L NW+NE   + P + AV + G P+ER   REE     G+F+V +T
Sbjct: 217 GITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVA-GKFDVCVT 275

Query: 515 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 574
            +++ ++++  LK+  W Y+I+DE HR+KN    L+KT+  +    RLL+TGTP+QN+L 
Sbjct: 276 SFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLH 335

Query: 575 ELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634
           ELW+LLNFLLP IF+S E F+EWF             + +Q  ++++LH V+RPF+LRR 
Sbjct: 336 ELWALLNFLLPEIFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 386

Query: 635 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 694
           K +VEK LP K + ILK  MS  QK YY+ +       ++ G G+ K L N++MQLRKCC
Sbjct: 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCC 445

Query: 695 NHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEI 751
           NHPYLF G          E ++  SGK  LLD+LLPKL++   RVL+FSQMTRL+DILE 
Sbjct: 446 NHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILED 505

Query: 752 YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 811
           YL    +++ R+DG+T  E+R   +  FN P S  F+FLLSTRAGGLG+NL TAD VI++
Sbjct: 506 YLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565

Query: 812 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 871
           DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IEE ++ERA +K+ +DA VIQ G  
Sbjct: 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 625

Query: 872 --NTTSTAQDRREMLK---EIMRRGTSSLGTDVPSEREINRLAARSDEE 915
               T    +  +M++   E++     S  TD     +I+R+ A+ +E 
Sbjct: 626 AEQKTVNKDELLQMVRYGAEMVFSSKDSTITD----EDIDRIIAKGEEA 670

Length = 1033

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3	Back alignment and domain information

>gnl\|CDD\|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240273 PTZ00110, PTZ00110, helicase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1125
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	100.0
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.97
PHA02558		501	uvsW UvsW helicase; Provisional	99.97
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.97
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.94
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.94
PTZ00110		545	helicase; Provisional	99.93
KOG0354		746	consensus DEAD-box like helicase [General function	99.93
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.93
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.93
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.92
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.92
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.92
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.92
PTZ00424		401	helicase 45; Provisional	99.92
KOG1123		776	consensus RNA polymerase II transcription initiati	99.91
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.91
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.9
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.89
PRK13767		876	ATP-dependent helicase; Provisional	99.88
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.88
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.88
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.88
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.87
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.87
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.87
PRK10689		1147	transcription-repair coupling factor; Provisional	99.87
PRK02362		737	ski2-like helicase; Provisional	99.85
PRK01172		674	ski2-like helicase; Provisional	99.84
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.83
PRK00254		720	ski2-like helicase; Provisional	99.83
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.83
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.81
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.78
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.78
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.78
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.77
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.77
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.77
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.76
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.75
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.74
PRK09401		1176	reverse gyrase; Reviewed	99.74
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.74
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.73
COG4096		875	HsdR Type I site-specific restriction-modification	99.73
COG1204		766	Superfamily II helicase [General function predicti	99.72
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.72
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.72
PHA02653		675	RNA helicase NPH-II; Provisional	99.72
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.71
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.7
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.7
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.7
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.7
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.68
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.67
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.66
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.66
PRK05580		679	primosome assembly protein PriA; Validated	99.66
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.65
COG1205		851	Distinct helicase family with a unique C-terminal	99.65
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.64
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.64
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.64
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.63
PRK09694		878	helicase Cas3; Provisional	99.62
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.61
PRK14701		1638	reverse gyrase; Provisional	99.61
KOG4284		980	consensus DEAD box protein [Transcription]	99.61
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.59
COG4889		1518	Predicted helicase [General function prediction on	99.58
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.58
COG1202		830	Superfamily II helicase, archaea-specific [General	99.58
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.57
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.56
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.56
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.55
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.54
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.53
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.53
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.52
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.52
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.52
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.5
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.5
PRK05298		652	excinuclease ABC subunit B; Provisional	99.49
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.47
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.46
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.46
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.45
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.44
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.43
KOG0327		397	consensus Translation initiation factor 4F, helica	99.42
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.41
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.4
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.37
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.35
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.33
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.32
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.31
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.26
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.25
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.23
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.23
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.16
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.11
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.11
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.07
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.04
PF14619		74	SnAC: Snf2-ATP coupling, chromatin remodelling com	98.98
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.97
COG0610		962	Type I site-specific restriction-modification syst	98.94
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.92
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.87
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	98.77
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.75
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.75
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.74
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.68
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.6
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.58
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.57
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.57
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.55
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.52
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.51
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.44
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	98.37
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.37
PRK15483		986	type III restriction-modification system StyLTI en	98.31
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	98.27
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	98.26
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.24
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	98.23
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.22
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.19
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.14
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	98.13
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	98.11
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	98.11
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.09
PF13871		278	Helicase_C_4: Helicase_C-like	98.02
PF08880		37	QLQ: QLQ; InterPro: IPR014978 QLQ is named after t	97.96
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.93
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	97.84
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	97.76
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.7
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.61
COG3587		985	Restriction endonuclease [Defense mechanisms]	97.36
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.34
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.24
PRK10536		262	hypothetical protein; Provisional	97.11
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.96
PRK14873		665	primosome assembly protein PriA; Provisional	96.91
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	96.89
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.88
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.78
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.65
KOG1803		649	consensus DNA helicase [Replication, recombination	96.59
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	96.49
KOG1131		755	consensus RNA polymerase II transcription initiati	96.32
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.31
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	96.24
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.22
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	96.21
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	96.1
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	96.1
PF07529		73	HSA: HSA; InterPro: IPR006562 This domain of unkno	96.07
smart00573		73	HSA domain in helicases and associated with SANT d	96.03
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	95.98
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	95.48
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	95.29
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	95.18
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	95.08
KOG1805		1100	consensus DNA replication helicase [Replication, r	95.08
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	94.91
smart00382		148	AAA ATPases associated with a variety of cellular	94.84
PRK04296		190	thymidine kinase; Provisional	94.55
PRK10875		615	recD exonuclease V subunit alpha; Provisional	94.45
PRK09112		351	DNA polymerase III subunit delta'; Validated	94.44
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	94.17
PLN03025		319	replication factor C subunit; Provisional	94.14
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	94.03
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	93.65
CHL00181		287	cbbX CbbX; Provisional	93.64
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	93.42
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	93.27
PRK06526		254	transposase; Provisional	93.05
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	92.7
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	92.68
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	92.68
PRK12402		337	replication factor C small subunit 2; Reviewed	92.58
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	92.42
PRK08181		269	transposase; Validated	92.27
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	92.09
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	92.03
PRK05707		328	DNA polymerase III subunit delta'; Validated	91.9
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	91.87
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	91.87
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	91.79
PRK06835		329	DNA replication protein DnaC; Validated	91.29
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	91.24
PHA02544		316	44 clamp loader, small subunit; Provisional	91.22
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	91.1
PTZ00112		1164	origin recognition complex 1 protein; Provisional	91.07
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	90.91
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	90.86
PRK08769		319	DNA polymerase III subunit delta'; Validated	90.8
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	90.72
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	90.71
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	90.6
PF13173		128	AAA_14: AAA domain	90.48
PRK07471		365	DNA polymerase III subunit delta'; Validated	90.35
PRK07952		244	DNA replication protein DnaC; Validated	90.35
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	90.29
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	90.27
PRK08116		268	hypothetical protein; Validated	90.26
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	90.24
PRK08058		329	DNA polymerase III subunit delta'; Validated	89.91
PRK07940		394	DNA polymerase III subunit delta'; Validated	89.69
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	89.69
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	89.47
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	89.45
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	89.44
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	89.36
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	89.21
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	89.2
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	89.13
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	89.03
PF13245		76	AAA_19: Part of AAA domain	88.91
PRK07993		334	DNA polymerase III subunit delta'; Validated	88.88
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	88.73
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	88.72
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	88.48
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	88.43
PRK14974		336	cell division protein FtsY; Provisional	88.08
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	88.07
PRK06090		319	DNA polymerase III subunit delta'; Validated	88.03
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	87.62
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	87.49
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	87.48
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	87.26
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	87.23
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	87.21
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	87.21
PRK06871		325	DNA polymerase III subunit delta'; Validated	87.07
PRK08084		235	DNA replication initiation factor; Provisional	86.69
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	86.55
PRK08903		227	DnaA regulatory inactivator Hda; Validated	86.5
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	86.5
PF00004		132	AAA: ATPase family associated with various cellula	86.39
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	86.13
TIGR00595		505	priA primosomal protein N'. All proteins in this f	86.1
PRK00440		319	rfc replication factor C small subunit; Reviewed	86.09
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	86.06
PRK06921		266	hypothetical protein; Provisional	85.93
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	85.64
PRK00411		394	cdc6 cell division control protein 6; Reviewed	85.29
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	85.15
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	84.85
PRK08727		233	hypothetical protein; Validated	84.69
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	84.64
PHA02533		534	17 large terminase protein; Provisional	84.51
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	84.43
PRK14087		450	dnaA chromosomal replication initiation protein; P	84.02
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	83.98
PHA03333		752	putative ATPase subunit of terminase; Provisional	83.86
PRK05580		679	primosome assembly protein PriA; Validated	83.83
PRK04195		482	replication factor C large subunit; Provisional	83.81
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	83.77
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	83.47
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	83.29
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	83.14
PRK06964		342	DNA polymerase III subunit delta'; Validated	83.04
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	82.72
PRK06893		229	DNA replication initiation factor; Validated	82.42
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	82.24
PRK00149		450	dnaA chromosomal replication initiation protein; R	81.99
PRK04132		846	replication factor C small subunit; Provisional	81.99
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	81.71
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	81.35
PRK12377		248	putative replication protein; Provisional	81.22
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	80.59
PRK05642		234	DNA replication initiation factor; Validated	80.53

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.2e-178  Score=1574.18  Aligned_cols=1042  Identities=43%  Similarity=0.676  Sum_probs=851.9

Q ss_pred             CChhHHHHHHHHHHHHhhhCCCCChhHHhhhhccccCCC--CCCcccc---------------c-------CCCCCCCCC
Q 001197           15 PDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQ--EADDDVV---------------H-------DDGGSDEGP   70 (1125)
Q Consensus        15 ~~~~~~~~~~i~a~~~lsrn~p~p~~~~~~~~~~~~~~~--~~~~~~~---------------~-------~~~~~~~~~   70 (1125)
                      ++++..+|++|+||+.+||+.|+|.+++.+|.++++.-+  .......               +       .-...+++|
T Consensus        12 ~~~~~~~~s~~~a~~~~sr~~~l~~~~~~~~~~~~~q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p   91 (1157)
T KOG0386|consen   12 MGPAGRTRSTISALSPLSRSSPLQQQQQQAVQQQQPQQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLSSP   91 (1157)
T ss_pred             CCccchhHHHHHhhhhhhhcCCCchhhHHHHhhhhhhhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccCCC
Confidence            678999999999999999999999999999998883211  0000000               0       001112222


Q ss_pred             -CCCCCCCCCCccCCccc---hhHHhHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHhHHHH
Q 001197           71 -VPEKASPVGSTISCGSD---LMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLE  146 (1125)
Q Consensus        71 -~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~e  146 (1125)
                       +...+...-++..+|..   ..... ..+.-+.+..+++..+..+++++|+.+|++++++++++|.+++++++.+|++|
T Consensus        92 ~~~~~~~~~r~~~~sp~~~~~~q~~~-~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~~~~~~~a~~e  170 (1157)
T KOG0386|consen   92 GSMQMPQQSRNFFESPQQPQQQQQQG-SSTQEGKITPLDQQNINPMQQARIQFRMQAQLQELQQLARSLMGELKSSAVGE  170 (1157)
T ss_pred             CcccccCCCcccccCCCchhhhcccc-cccCcCccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhhhhhh
Confidence             22222122233333331   11110 01111124447889999999999999999999999999999999999999999


Q ss_pred             HHhccchHHHHHHHHHHHHHhHhhhhcCCCCchhhhhhhhhccCcccCCCcccccchhHHHhhHH----HHHHHHHHHHH
Q 001197          147 LYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKR----DAERLSRLEEE  222 (1125)
Q Consensus       147 ~~~l~l~~~q~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  222 (1125)
                      +++|+|+++|++||..+++       |...+.++.                 ++.+...+.|.+|    +++.+++||++
T Consensus       171 ~~~lrl~~~q~qlr~~~~~-------~~~~~~~~~-----------------~~~n~~~~~R~~~q~~~~~r~te~Le~q  226 (1157)
T KOG0386|consen  171 DQALRLLMLQMQLRNPVSQ-------PLRRDSSSE-----------------TALNPKAFKRGKRQTLSEARLTEKLEKQ  226 (1157)
T ss_pred             hHHHHhHHHHHHHhhhhhc-------ccccccccc-----------------cccCHHHHhhhhhhhHHHHhHHHHHHHH
Confidence            9999999999999999995       433333221                 1111122234443    34556788999


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh----hhhhhhHHHHHHHHHHHhhhHHHHH
Q 001197          223 ARNQIETRKR----KFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGR----QRQRATRAEKLRFQALKADDQEAYM  294 (1125)
Q Consensus       223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~r~~~~r~~~lk~~d~e~y~  294 (1125)
                      ||.+.|++++    +||..++.|+++|...++....+..+.+++|++||++    ++++++|.+|+|+++|+++|+|+|+
T Consensus       227 qr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~  306 (1157)
T KOG0386|consen  227 QRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKHNDEEGYR  306 (1157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence            9988877654    4899999999999999999888999999999999995    4688999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCcchhhhccccCCCCCCCCCCCCCccccCCCCCC
Q 001197          295 RLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHNDD  374 (1125)
Q Consensus       295 ~~~~~~k~~~~~~ll~~t~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  374 (1125)
                      +|++++|+.|+++||+||++|+.+|+++|+.|+.+-. +     ..++.+                   ...+.+....+
T Consensus       307 kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~~-~-----~~~~~d-------------------~~~i~~~ak~~  361 (1157)
T KOG0386|consen  307 KLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSENP-D-----ANSASD-------------------ISGISGSAKAD  361 (1157)
T ss_pred             HHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhcccc-c-----cchhhh-------------------hhhhhhhhcch
Confidence            9999999999999999999999999999999986200 0     000000                   11112222233


Q ss_pred             chhHHHHHHHhhhhhhhhhcccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHcc
Q 001197          375 SGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK  454 (1125)
Q Consensus       375 ~~~~~~~~~~y~~~~h~i~e~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~  454 (1125)
                      ..+...+...||.++|.|.|.|..||.++.||+|++||++||+||+++|+|++|||||||||||||+|+|++|+||++.+
T Consensus       362 ~~d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K  441 (1157)
T KOG0386|consen  362 VDDHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK  441 (1157)
T ss_pred             hhhhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc
Confidence            33466778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEE
Q 001197          455 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYM  534 (1125)
Q Consensus       455 ~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~V  534 (1125)
                      ...||+|||||+++|.||..||.+|+|++..++|.|++..|..+...+..  ++|+|++|||++++++...|.+++|.||
T Consensus       442 ~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk~lLsKI~W~yM  519 (1157)
T KOG0386|consen  442 QMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDKALLSKISWKYM  519 (1157)
T ss_pred             ccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCHHHHhccCCcce
Confidence            99999999999999999999999999999999999999999999988877  8999999999999999999999999999


Q ss_pred             EEcCCcccCChhhHHHHHHH-ccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCc-ccCCh
Q 001197          535 IVDEGHRLKNHECALAKTIS-GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTD  612 (1125)
Q Consensus       535 IIDEAHriKN~~SklskaL~-~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~-~~~~~  612 (1125)
                      ||||+|||||..|+++..+. .|.+.+|++|||||+||++.|||+||||++|.+|++...|.+||+.||.+.|. +++++
T Consensus       520 IIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLte  599 (1157)
T KOG0386|consen  520 IIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTE  599 (1157)
T ss_pred             eecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccc
Confidence            99999999999999999995 88999999999999999999999999999999999999999999999999985 89999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhccccccc--CCCccchHHHHHHHH
Q 001197          613 EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT--GTGKSKSLQNLSMQL  690 (1125)
Q Consensus       613 ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~--~~~k~~~l~n~~~qL  690 (1125)
                      ++..++|.|||+||+||+|||.|++|+..||+|++.+++|.||++|+.+|..+.+.+....+.  +.+..+.++|.+|+|
T Consensus       600 EEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqL  679 (1157)
T KOG0386|consen  600 EETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQL  679 (1157)
T ss_pred             hHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHH
Confidence            999999999999999999999999999999999999999999999999999999988877766  556778999999999


Q ss_pred             HHhhCCCccccc---ccch-hhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCC
Q 001197          691 RKCCNHPYLFVG---EYNM-WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGS  766 (1125)
Q Consensus       691 RkicnhP~L~~~---~~~~-~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGs  766 (1125)
                      ||||||||+|..   .+.. +....+++.||||++|+++|++|++.||+||+|||||+++++|++||.+++++|.|+||+
T Consensus       680 RKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~  759 (1157)
T KOG0386|consen  680 RKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQ  759 (1157)
T ss_pred             HHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCC
Confidence            999999999943   2322 234699999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCC
Q 001197          767 TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS  846 (1125)
Q Consensus       767 ts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~T  846 (1125)
                      |+.++|..+++.||.|+++||+||+||+|||+|||||+||+|||||++|||++++||.+|||||||+++|+|+||++.++
T Consensus       760 TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s  839 (1157)
T KOG0386|consen  760 TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS  839 (1157)
T ss_pred             cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhcCcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhcCHHHHHHHHHhhHHH
Q 001197          847 IEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEER  926 (1125)
Q Consensus       847 IEE~Il~r~~~Kl~l~~~VI~~g~~~~~s~~~d~~e~L~~il~~~~~~~~~~~~~~~~in~l~~r~~~e~~~f~~~d~~~  926 (1125)
                      +||+|++++..|++++++||++|.|++.++..+|+++|+.|+..+.++.++++|++++||.|+||+|+|+++|++||+++
T Consensus       840 veE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r  919 (1157)
T KOG0386|consen  840 VEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEER  919 (1157)
T ss_pred             HHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             HHhhhh---cccccccCccccccccCCChhhhhhhcccccCCCCcCCCccccccccccCCCCCHHHHHHHhhccCChh-h
Q 001197          927 RQKENY---RSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDIS-K 1002 (1125)
Q Consensus       927 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~-~ 1002 (1125)
                      ..+++.   ++|||+++++|+|+...... ++....++..+  ...++|+|+||+|+|+|.|||.||+++++++.+.. +
T Consensus       920 ~~~e~~~~~k~rl~ee~e~p~~i~~~~~~-~~~~~~~~~~~--~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~  996 (1157)
T KOG0386|consen  920 RATENQQEKKPRLVEEAELPADIYKRDQG-VERLSEEEEEE--KILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSE  996 (1157)
T ss_pred             HhhhhhccccchhhhhhhcHHHHHhcchh-hhhhhhhhhhh--ccccccccccceeecccccchhhhhhhccccccccch
Confidence            887643   67999999999999887653 22221111111  13579999999999999999999999999855333 2


Q ss_pred             hhhhccccccCCCCCCCCCCCCchhhhhhcccccCccccc------cCCCCccccCCCccccccccCCCCCccchhhhhh
Q 001197         1003 LSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLA------SEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKS 1076 (1125)
Q Consensus      1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1125)
                      ...+++++...+.++......+..-+.+..+.-..++++.      +...-++.|...|-++       ..|++-.  .-
T Consensus       997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k-------~~~d~~~--~i 1067 (1157)
T KOG0386|consen  997 EEERRRGRKKSSLDTRPLSQKKRKLRPRSPKQALKIASTSIKYKDSAGRELSEVFLKLPSRK-------EYPDYYE--II 1067 (1157)
T ss_pred             hhhhccCCCccccccccchhhcccccCCChHHHHHHHHHHHhcccccccccchhcccCcccc-------cccchHH--Hh
Confidence            2222222222233333222221100000000000111111      1112233332233111       1111111  11


Q ss_pred             cccccccCCCCCcccchhhhccccCCccccCCCCCCCCCCCCCCC
Q 001197         1077 EHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRG 1121 (1125)
Q Consensus      1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1125)
                      +.. +.-...+.++..|.+...|+..+.++++.+++|.-|+.|+.
T Consensus      1068 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~ 1111 (1157)
T KOG0386|consen 1068 KKP-VAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSR 1111 (1157)
T ss_pred             cch-hhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCce
Confidence            111 22235668899999999999999999999999997777764

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes []	Back alignment and domain information

>smart00573 HSA domain in helicases and associated with SANT domains	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK04132 replication factor C small subunit; Provisional	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1125
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-122
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		7e-65
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-58
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		3e-56
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		4e-20
3dmq_A		968	Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT		3e-05

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800