Citrus Sinensis ID: 001198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120-----
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMNF
ccccHHHHHccccccHHHHHHcccccccHHHHccccHHHHHHHHcccccccHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccccccccccHHHHHHccccccccHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHccccccccHcccccHHHccccccccccccccccEEcccccccccccccccccccEcccccccccccccccccccHHccccccccccccccccccHHHHHHHcccccccEEcccccccccccHcccccccccccccccEEcccccEEccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEcccccccEEEccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHcEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEcEccccccccccccEccccEEEcccccccccHHHHHcccccEEEEccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEEccccHHcccccccEEccccccccccccccccccccccEccccccccccccHccccccccccEEEEcccccccccc
MFYSQFIlakkgplgTIWIAAHLERKLrknqvadtdigvsvdsilfpdvPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhsitlpetfdlddfelpdndifqgnyvdhhvstreqitlqdtmdgmaystsqfglderfgdgdasqmgldldedllldkgtaaghgvsdadpqgsvkptthweqDNISERMNEIseertvndganqlervgldaepieyaeapstpglvqepnlssgqKALAsydhfesedqnsnelmATESrvndlsnsdchngdghtadwplhkdsnhdtvqcmlpekngyhvRDAAVKQAESLGesvksmpfvpdgsegtinpldgskrfknlqnapgmlsgesqqvnsdktaaslnctnvtcdmqdlnpetcpgstnmpvsedRLADYQAsnkkkshndaevsdnaagsgslVVVDadihacpdakdpkmlnidvAHEETASVSinvlkpcsyhtsdphmsspghdnslaqnlqplgvdlhsserskmnqasvdvqgeecyltdvmqseksqisgpsvcgdiqedngtldepldnatasNNELKKLnnsitsdlpapekllsvpegllnkpndlivestpekevlagsggvdagnklnsgkkrsyteSTITVeslnssesfgvdrtkrnsefipddddllSSILVgrkssvlkmkptppvrevasrkraRSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIrkkapctgpEILMIQMQFLeddifnepiftgmsaeLTSVHCEihdlskisisetdkdhgsseiandigcsiapnvieggkqgskepvalrnngdtqpaetsiqteshqgidhqfgaqntdaqghinsdtDVVKTVqneplaelnemdvdrgnvevaeeascsvnhgfgtssqtdvasaevcnqptgdktntvdaSLLVDtvcltpeptvdaqpvevgtsvakmdnakgvedtevIDRNIENIVAVETeakgtdgvlveegkvgvsvengadvetdrsVLTDAvntqegvsletggyndlaaangdnsrlevrnedgplagdwgsngkdptsnhmfseepvidstnsvelggdtinvslddgksqvdlrspmddgrmnf
MFYSQFIlakkgplgTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGhgvsdadpqgsvkptthweqdNISERMNEIseertvndganQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKkkshndaevsdnaagSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKevlagsggvdagnklnsgkkrsytestitveslnssesfgvdrtkrnsefipddddllssilvgrkssvlkmkptppvrevasrkrarsasqtnalkrkvlmddtmvlhgdvirqqltntedirrirkkapctgpEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTpeptvdaqpvevgtsvakmdnakgvedtevidrNIENIVAVeteakgtdgvlveegkvgvsvengadvetdrsVLTDAVNtqegvsletggyndLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTInvslddgksqvdlrspmddgrmnf
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGldldedllldKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPddddllssILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMNF
**YSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL*******PYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAY**********************************************************************************************************************************************************************C**********************************************************************************************************************************LVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPC*************************************************Y***********************************************************************************************************************************************************************************KVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKIS***************DIGCSIA**********************************************************************************************************************TVDASLLVDTVCLTPEPTVDA**V*V***********GVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVE***************************************************************************************************************
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLP**ESTAPYHSITLPETFDLDDFELPDNDI**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLLSSIL**************************************LMDDTMVLHGDVIRQQLTN*****RI*KKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKI*************************************************************************************************************************************************************************************DTEVIDRNIENIVAVETEA**************************R********************************************************H**SE*P****TNS***********LDDGKSQVDLRSPMD*GRMNF
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLAD****************DNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSY************DNSLAQNLQPLGVDLHSS***********VQGEECYLTDVMQ**********VCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKM*********************NALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISIS********SEIANDIGCSIAPNVIEGGKQGSKEPVALRN***************HQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMNF
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLL**************************************************************************************************************************ADWPLHKDSNHDTVQCMLPEKN********************S*P**********************************************************************************************************************************************************************************************************************************************SITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKE*************************************************IPDDDDLLSSILVGRKSSVLKMKP*********************LKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIA******************************************************T***GHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASC*******TSSQ**VASAEVCNQPT*D*TN*VDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDG****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1125 2.2.26 [Sep-21-2011]
Q61550635 Double-strand-break repai yes no 0.186 0.330 0.401 9e-36
Q9FQ19693 Sister chromatid cohesion no no 0.129 0.210 0.486 1e-35
O60216631 Double-strand-break repai yes no 0.161 0.288 0.438 2e-35
Q3SWX9630 Double-strand-break repai yes no 0.161 0.288 0.438 2e-35
O93310629 Double-strand-break repai N/A no 0.144 0.259 0.470 5e-35
A2AU37552 Double-strand-break repai no no 0.139 0.284 0.459 2e-33
Q9H4I0556 Double-strand-break repai no no 0.139 0.282 0.459 2e-33
D2HSB3554 Double-strand-break repai no no 0.139 0.283 0.459 7e-33
Q9FQ20810 Sister chromatid cohesion no no 0.136 0.188 0.428 3e-28
P30776628 Cohesin subunit rad21 OS= yes no 0.117 0.210 0.444 2e-26
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 Back     alignment and function desciption
 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFY+ F+L+K+GPL  IW+AAH ++KL K  V + ++  SV+SI+ P V +ALR S HLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIY RK  YL  DC+EA +KIK AFR   VDLP E   A Y++ITLPE F   D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
           LPD +DI        + S  E+IT+++ +  ++         FG+D+R    +G A +  
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178

Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
              D+D+L+   T+A + +   +P+ S          N++E+MN +  E    D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217
Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 Back     alignment and function description
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 Back     alignment and function description
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 Back     alignment and function description
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 Back     alignment and function description
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2 Back     alignment and function description
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3 Back     alignment and function description
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1 Back     alignment and function description
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 Back     alignment and function description
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1125
255547434 1247 cohesin subunit rad21, putative [Ricinus 0.954 0.861 0.489 0.0
359495890 1335 PREDICTED: uncharacterized protein LOC10 0.930 0.784 0.462 0.0
2960833951133 unnamed protein product [Vitis vinifera] 0.837 0.831 0.480 0.0
2241012591208 predicted protein [Populus trichocarpa] 0.921 0.858 0.480 0.0
374095603 1336 cohesin subunit [Camellia sinensis] 0.943 0.794 0.422 0.0
3565669611223 PREDICTED: uncharacterized protein LOC10 0.88 0.809 0.423 0.0
356530009 1247 PREDICTED: uncharacterized protein LOC10 0.905 0.817 0.417 0.0
449509197892 PREDICTED: uncharacterized LOC101223080, 0.771 0.973 0.451 0.0
4494703581147 PREDICTED: uncharacterized protein LOC10 0.771 0.756 0.451 0.0
357507871 1487 Double-strand-break repair protein rad21 0.719 0.544 0.433 1e-177
>gi|255547434|ref|XP_002514774.1| cohesin subunit rad21, putative [Ricinus communis] gi|223545825|gb|EEF47328.1| cohesin subunit rad21, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1135 (48%), Positives = 717/1135 (63%), Gaps = 61/1135 (5%)

Query: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
            MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+VPIALRLSSHLL
Sbjct: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLL 60

Query: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
            LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121  LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDL 180
            LPDNDIFQGNY+DHHVSTREQITLQDTMDG  YSTSQFGLDERFGDGD SQ+GLDL+E +
Sbjct: 121  LPDNDIFQGNYIDHHVSTREQITLQDTMDGAVYSTSQFGLDERFGDGDTSQVGLDLEEVI 180

Query: 181  LLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE 240
            LL   +      +DA  Q SV+     +     ERM   SEE  +N   +++E +  + E
Sbjct: 181  LLIIMSIFSDCRNDA--QTSVELLEPSKTVASHERMTGTSEEMPLNGTRSKIEDLAANLE 238

Query: 241  PIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNG 300
             I+YA+APSTPGL++EPNLSS +  L   DH ESED N   L   E   N  S S  H+G
Sbjct: 239  VIDYAQAPSTPGLMEEPNLSSVKDCLVCDDHLESEDHNVRGLGGMEISKNAPSKSALHHG 298

Query: 301  DGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDG-SEGTI 359
            D    D  L    +HDT+  M  E++     D  + QA   GE + +      G ++ T+
Sbjct: 299  DD-ARDLSLVDHLSHDTIAYMPTEEHSRLSGDLEINQAGLEGELLSTAVTSEHGPADETV 357

Query: 360  NPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPV 419
            +  D S + ++          +++ V+SD      +   +  D ++   ET     +  +
Sbjct: 358  SRQDESHQIED----------KNKVVSSDNGETVTSIDQINGDYEESLAETNDNKFSNKI 407

Query: 420  SEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEET 479
             E  L    A     S         +    +L  V+ +       +D + L   V +E+ 
Sbjct: 408  GECLLNGKVAPMPAHS---------SGLPTALETVNVEGQDGQGQEDSETLLDHVNNEQM 458

Query: 480  ASVSINVLKPCSYHTSDPHMSSPGHDNS-LAQNLQPLGVDLHSSERSKMNQA------SV 532
                I+VL PC+ H S P + S   D S L  +LQ + V   SSE  +  +       S 
Sbjct: 459  KPTCISVLLPCNSHLSQPDILSGEADTSVLVSDLQSVDVAPLSSETVQREEGLHTSGTST 518

Query: 533  DVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSD 592
             VQGEEC++TDV+QSE++QIS P++ G+ QED G  D  LDN  ++NN+ + L +  T++
Sbjct: 519  KVQGEECHVTDVVQSEENQISDPTLNGETQEDGGKHDVRLDNEISNNNQNENLTSPTTTE 578

Query: 593  LPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVE 652
            LPAPEKLLS+P+ LL+KP+DL+VE TP+KEV     G  AG ++ +GKKRS+ ES +TV+
Sbjct: 579  LPAPEKLLSIPQTLLDKPHDLLVE-TPDKEVQEEGDGSGAGIRI-TGKKRSFAESALTVQ 636

Query: 653  SLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSAS 712
            SLNS ESFGV R+KR  E IPDDDDLLSSILVGRKSS LKMKPTPP  EV S KRAR  S
Sbjct: 637  SLNSVESFGVTRSKRTVESIPDDDDLLSSILVGRKSSALKMKPTPPAPEVPSMKRARFTS 696

Query: 713  QTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFN 772
            + +ALKRKVLMDD+MVLHGD+IRQQLTNTEDIRR+RKKAPCT  EILMIQ QFLED+IF+
Sbjct: 697  RPSALKRKVLMDDSMVLHGDIIRQQLTNTEDIRRLRKKAPCTRTEILMIQRQFLEDEIFS 756

Query: 773  EPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSS-EIANDIGCSIAPNVIEGGKQGSK 831
            EP+ TGMSA LT +H E  D S I + E D ++ +S E+ ND   +      +GG +GS 
Sbjct: 757  EPVLTGMSAYLTRMHSEAFDWSGIKVCENDDNNMASLEVVNDEHSARQIVKQDGGMEGST 816

Query: 832  EPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVV--KTVQNEPLAE 889
            EPV  R + + Q +E SI  ++ Q  DH  G+ + D + H+N   D+V  +T  +E L E
Sbjct: 817  EPVGCRTDIEEQTSEVSINKDNQQVEDH-LGSYDIDNE-HMNGVVDIVGHRTSVHEHLGE 874

Query: 890  LNEMDVDRGNVEVAEEASCSVNH---GFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVD 946
             +EM+ D+ N EV++    ++NH   G  T SQ++ AS ++   P+     TVD S  VD
Sbjct: 875  TSEMENDKVNSEVSD----AINHSAPGLET-SQSEPASGDILEMPSA----TVDQS--VD 923

Query: 947  TVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEE 1006
            T  + P   +  Q +E    +  M N  G++ TEV+D   + I AVE E +  + +L+EE
Sbjct: 924  TPII-PSDEIHNQLIEDVAGLRDMSNDIGLDCTEVVDNCAKKIGAVEAELRTGEELLLEE 982

Query: 1007 GKVGVSVENGADVETDRSVLTDAVNTQ-EGVSLETGGYNDLAAANGDNSRLEVRN----- 1060
             KV  SVE G D + D S   D  +     VS E G + + ++ N D +  E+ N     
Sbjct: 983  SKVRASVEIGGDEQVDGSAPNDGADASLANVSSEAGSFVNFSSVNIDQAFEEIENYKHGV 1042

Query: 1061 --EDGPLAGD-WGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQV 1112
              ++G L G+  G + KD TS+H+ SEE  I+ST ++ L GD  N S++DG + V
Sbjct: 1043 FSDNGGLGGNSMGIDDKDQTSDHLCSEEAKINSTYTIGLDGDFKNTSMNDGDNTV 1097

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495890|ref|XP_002265684.2| PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083395|emb|CBI23350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101259|ref|XP_002312205.1| predicted protein [Populus trichocarpa] gi|222852025|gb|EEE89572.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|374095603|gb|AEY85029.1| cohesin subunit [Camellia sinensis] Back     alignment and taxonomy information
>gi|356566961|ref|XP_003551693.1| PREDICTED: uncharacterized protein LOC100803412 [Glycine max] Back     alignment and taxonomy information
>gi|356530009|ref|XP_003533578.1| PREDICTED: uncharacterized protein LOC100809967 [Glycine max] Back     alignment and taxonomy information
>gi|449509197|ref|XP_004163522.1| PREDICTED: uncharacterized LOC101223080, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470358|ref|XP_004152884.1| PREDICTED: uncharacterized protein LOC101223080 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357507871|ref|XP_003624224.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|355499239|gb|AES80442.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1125
TAIR|locus:21814571031 SYN4 "sister chromatid cohesio 0.254 0.277 0.667 7e-169
UNIPROTKB|F1S874469 RAD21L1 "Uncharacterized prote 0.139 0.334 0.465 5.1e-34
UNIPROTKB|E5RFV8225 RAD21 "Double-strand-break rep 0.144 0.724 0.470 1.7e-32
UNIPROTKB|E5RIN7228 RAD21 "Double-strand-break rep 0.144 0.714 0.470 1.7e-32
UNIPROTKB|O60216631 RAD21 "Double-strand-break rep 0.232 0.415 0.347 3.3e-32
TAIR|locus:2097548693 SYN3 "AT3G59550" [Arabidopsis 0.261 0.424 0.348 4.5e-32
UNIPROTKB|Q3SWX9630 RAD21 "Double-strand-break rep 0.232 0.415 0.347 5.6e-32
UNIPROTKB|E2QRU9631 RAD21 "Uncharacterized protein 0.232 0.415 0.347 5.7e-32
UNIPROTKB|F1S1K0631 LOC100738633 "Uncharacterized 0.232 0.415 0.347 5.7e-32
ZFIN|ZDB-GENE-060503-223637 rad21b "RAD21 homolog (S. pomb 0.223 0.394 0.368 1.1e-31
TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 959 (342.6 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
 Identities = 195/292 (66%), Positives = 219/292 (75%)

Query:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
             MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
             LGVVRIYSRKVNYLFDDCSEALLK+KQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGXXXXXXX 180
             LPDN+IFQGNYVDHHVST+EQITLQDTMDG+ YSTSQFGLDERFGDGD SQ         
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query:   181 XXXKGTAAG--HGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLD 238
                K        GV   D    +          I + M  +SE   ++    Q+E + ++
Sbjct:   181 FQDKDVIGSDDEGVPGIDHNAYLDAAA----PGIKDSMEGVSEAMPMDFNEEQVEDLAMN 236

Query:   239 AEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN 290
              E IE A+AP TPGLV+ PN SS ++ +A  DH + ED N+ E + +   +N
Sbjct:   237 NEFIEDAQAPQTPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELN 288
GO:0000228 "nuclear chromosome" evidence=IEA
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
UNIPROTKB|F1S874 RAD21L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E5RFV8 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E5RIN7 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VIII0671
hypothetical protein (1209 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1125
pfam04825110 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec 2e-50
>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein Back     alignment and domain information 
 Score =  172 bits (439), Expect = 2e-50
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +L KKGPL T+W+AA LE+KL + Q+ + DI  S + IL P+ PIALRLS  LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFR-STAVDLPPEESTAPYHSITLP 111
            GVVRIYSRKV YL +DC+EAL ++K+AFR    +DLP  E  A  +++TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLP--ERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1125
KOG1213614 consensus Sister chromatid cohesion complex Cohesi 100.0
PF04825111 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot 100.0
KOG1213614 consensus Sister chromatid cohesion complex Cohesi 92.9
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-44  Score=413.11  Aligned_cols=123  Identities=71%  Similarity=1.097  Sum_probs=120.9

Q ss_pred             CCcchhhhhccCChhhHHHHhhccCCCcchhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEeccchhHHHhHHH
Q 001198            1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE   80 (1125)
Q Consensus         1 MFYS~~LLSKKGPLAtIWLAATL~KKLSKKqIl~tDI~kSCeeIl~PevPLALRLSGqLLlGVVRIYSRKvkYLL~DCne   80 (1125)
                      |||+|+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+||++
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 001198           81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPD  123 (1125)
Q Consensus        81 aL~KIK~aFR~~qVDLP~e~~~A~~eaITLPEtfdLDDfeLPd  123 (1125)
                      +|.|||++||+++||+|....+.++.+|||||+|++|++.+|+
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~  123 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD  123 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc
Confidence            9999999999999999999999999999999999999998885

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1125
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 9e-14
 Identities = 90/673 (13%), Positives = 172/673 (25%), Gaps = 192/673 (28%)

Query: 19  IAAHLERKLRKN----QVADTDIGV----SVDSIL-FPDVPIALRLSSHLLLGVVRIYSR 69
           I +  E     N     V D    +     +D I+   D           L   +     
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQE 76

Query: 70  KVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQG 129
           ++   F    E +L+I   F  + +     E   P        +     +    + ++  
Sbjct: 77  EMVQKF---VEEVLRINYKFLMSPIK---TEQRQP--------SMMTRMYIEQRDRLYND 122

Query: 130 N--YVDHHVSTREQIT--------LQD----TMDGMAYSTSQFGLDERFGDGDASQMGLD 175
           N  +  ++VS  +           L+      +DG+             G G        
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------------GSG-------- 162

Query: 176 LDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERV 235
                   K   A         Q  +     W        +N +    +       L+++
Sbjct: 163 --------KTWVALDVCLSYKVQCKMDFKIFW--------LN-LKNCNSPETVLEMLQKL 205

Query: 236 GLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN----- 290
               +P                + SS  K         S       L+ ++   N     
Sbjct: 206 LYQIDP----------NWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 291 -DLSNSDCHNG-DGH------TADWPL--HKDSNHDTVQCMLPEKNGYHVRDAAVKQAES 340
            ++ N+   N  +        T    +     +   T   +          +      + 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 341 LGESVKSMPFVPDGSEG-TINPL----------DGSKRFKNLQNAPGMLSGESQQVNSDK 389
           L    + +P      E  T NP           DG   + N +            VN DK
Sbjct: 311 LDCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWK-----------HVNCDK 354

Query: 390 TA----ASLNCTNVTCDMQ----DLN--PETCPGSTNMPVSEDRLADYQASNKKKSHNDA 439
                 +SLN      + +     L+  P       +  +    L+           +D 
Sbjct: 355 LTTIIESSLNVLE-PAEYRKMFDRLSVFPP------SAHIPTILLSLIWF---DVIKSDV 404

Query: 440 EVSDNAAGSGSLVVVDAD-----IHACPDAKDPKMLNIDVAHEETASVSINVLK-PCSYH 493
            V  N     SLV          I +       K+ N    H       ++    P ++ 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKTFD 460

Query: 494 TSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDV--MQSEKSQ 551
           + D  +  P  D     ++   G  L       +            +L D   ++  K +
Sbjct: 461 SDD--LIPPYLDQYFYSHI---GHHL-----KNIEHPERMTLFRMVFL-DFRFLEQ-KIR 508

Query: 552 ISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPN 611
               +           L+            LK     I  + P  E+L++     L K  
Sbjct: 509 HDSTAWNAS----GSILNTLQQ--------LKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 612 DLIVESTPEKEVL 624
           + ++ S    ++L
Sbjct: 557 ENLICS-KYTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00