Citrus Sinensis ID: 001222

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120

MLLINNKVMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEEcEEEEEEEcccccccccccccccEEEccccccHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEccccccccccEEEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEcccHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEEEccccccccHHHHccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccEEEEEEEEccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccEEEEHHccccccHHHHHHHHHHcHHHccccEEEEEEcccccHHHHHHHccccccEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHcccccEEcccccHHHHHHHHHHHccccccccccccc

cEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHccccEEEEEccccccccEEEEEcccccEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHccccEccccccEEEEEEEcccccccHHccccccccccHHHcEEEEEcHHHcHHHHHHHcccccccccHHHHHHcccccEEEcccccccEEcccccccEEEEcccccccccccHHHcccccccccccccEEEEEEcccccccEEEccccHHcccccEEEEEEEcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEccHHHHHHHHHHHHHHHHHEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccEEEcccHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHcccccEccccccHHHHHHHHHHHHccccccccHHHHHcHccccccccEEEEEcccccHHHHHHccccccEEEcccccccHHccccccEEEEEEccccccHHcccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcHcccccccccEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccc

mllinnkvmssnmqplVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRynkpatqaEQIQLYEVMRDVTWAMFASRKALNAITINYKngfvqafhrdhrsnntfyiysdlsnysigtsgpydsnlissregwndqsikgnisaiwyrepldpitgekigkaspippddliniagisqvpdgVASWHVAVSKftnspllsaalpvwdpttsnksIVAVVGVTTALSSVGQLMKELVEVHSghiyltsqegyllatstnaplltnsstgpnlvkavdsdnpviQMGAQWLqseygskvppghvihvqnaklghkqYYMDTFFlnlkrlpivgviiipreyimgkADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIlksddqltnEQYSTVCQIKKSSYALLRLLNRILDLskvesgkmelenTEFDLQKELEELVDMFSVQcsnhnvetvldlsdniprnvrgdpgrVFQIFSNLINnsikftssghiiirgwcenldtskntaefptdrkKFGRAFRTKLKQQANNAMNFREDNKLALCfevddtgcgidqskWETVFESfeqgdpsttrkhggtglGLSIVRTLVNKMGgeikvvkknspgTLMQLYLLLGasseskqiydadfpnTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELldpispvssngfdapyssreplKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNhqttspiktelsregqnivvtkplykgKMIQLLETAVRGKILGMqnrissttnegngeeiRGSIanysaskhqkfrkcsfefssicpgesssrREDLIHTMFRErhqigssrrdqpcsssnsssnQKRILEGLRILLAEDTPLIQIVACKILEKvgatvsvvpDGLQAVEALNRMLAAESSRRrsllqgspsetpdtprfdlilmdcqmpkmdgyEATIEIRKSesehgarnipIVALTAHamnadekkclgvgmnayltkpidserMVSTILRLtknmpseatgttr

MLLINNKVMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVEtvldlsdniprnvRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENldtskntaefptdrkkFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEqgdpsttrkhggtglGLSIVRTLVNKMGGEIkvvkknspgTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTtspiktelsregqnivvtkplykgkmIQLLETAVRGKILGMQNRissttnegngeeIRGSIANYSASKHQKFRKCSFefssicpgesssrREDLIHTMFRerhqigssrrdqpcsssnsssnqkRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESsrrrsllqgspsetpdtprfdLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYltkpidsermVSTIlrltknmpseatgttr

MLLINNKVMSSNMQPLVVSHLIIVFlllallSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASvcilvigcicililTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAllrllnrildlSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIAlldlssdlWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCsssnsssnQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR

************MQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLT*******LVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHL**************QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT*****************************MNFREDNKLALCFEVDDTGCGIDQSKWETVFESF************GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPIS*******************EMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQ********************************CSFEF**********************************************ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN**************************FDLILMDCQMPKMDGYEATIEI********ARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR**************

*******VMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPY***********NDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPL****ST***LVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRK***SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD************KKFGRAF***************EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL******************VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSS**********************RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL***************

MLLINNKVMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF************GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRER*********************KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA*****************PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM*********

MLLINNKVMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN***********************************REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSR****************ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML*********************PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN**********

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SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MLLINNKVMSSNMQPLVVSHLIIVFLLLALLSWVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGxxxxxxxxxxxxxxxxxxxxxFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1120	2.2.26 [Sep-21-2011]
Q9SXL4		1207	Histidine kinase 1 OS=Ara	yes	no	0.958	0.889	0.589	0.0
O22267		1122	Histidine kinase CKI1 OS=	no	no	0.555	0.554	0.257	2e-48
Q9C5U1		1036	Histidine kinase 3 OS=Ara	no	no	0.258	0.278	0.370	4e-44
Q54YZ9		2062	Hybrid signal transductio	yes	no	0.216	0.117	0.363	5e-42
Q54U87		2150	Hybrid signal transductio	no	no	0.235	0.122	0.353	2e-41
Q9C5U0		1080	Histidine kinase 4 OS=Ara	no	no	0.296	0.307	0.304	4e-41
O14002		2310	Peroxide stress-activated	yes	no	0.201	0.097	0.351	1e-38
P0AEC5		918	Signal transduction histi	N/A	no	0.203	0.248	0.353	2e-38
P0AEC6		918	Signal transduction histi	yes	no	0.203	0.248	0.353	2e-38
P0AEC7		918	Signal transduction histi	N/A	no	0.203	0.248	0.353	2e-38

>sp\|Q9SXL4\|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2	Back alignment and function desciption

 Score = 1311 bits (3394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1154 (58%), Positives = 848/1154 (73%), Gaps = 80/1154 (6%)

Query: 9    MSSNMQPLVVSHLIIVFL-----LLALLSW----VYTTKSLDTLAYGLRYELLQRPLLRM 59
            +SS     VV   I+V L     LL +L+W    +YT +SL TLAYGLRYELLQRP+LRM
Sbjct: 71   LSSYYSVFVVRLAIMVMLAILIGLLTVLTWHFTRIYTKQSLQTLAYGLRYELLQRPVLRM 130

Query: 60   WNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITI 119
            W+++N+T+E+T AQVKLSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITI
Sbjct: 131  WSVLNTTSELTTAQVKLSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITI 190

Query: 120  NYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAI 179
            NY+NGFVQAFHRD  S++TFYI+SDL NYSI  +GP D +      GWN++SI GN+SAI
Sbjct: 191  NYRNGFVQAFHRDPASSSTFYIFSDLKNYSISGTGPEDVS------GWNNKSIHGNMSAI 244

Query: 180  WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPV 239
            WY++ LDP+TGE +GK   IPPDDLINIAGISQVPDG ASWHV VSK+ +SPLLSAALPV
Sbjct: 245  WYQQQLDPVTGENLGKPLKIPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPV 304

Query: 240  WDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNS 299
            +D   SNKSIVAVVGVTTAL SVGQLM++LVEVH GHIYLTSQEGYLLATST+ PLL N+
Sbjct: 305  FD--ASNKSIVAVVGVTTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLKNT 362

Query: 300  STGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLK 359
            S GP L+KA DS+  VI+ GAQWL+  YGSK P  HV+H +N KLG ++YY+D+F+LNLK
Sbjct: 363  SNGPQLMKATDSEEWVIKSGAQWLEKTYGSKRP--HVVHAENVKLGDQRYYIDSFYLNLK 420

Query: 360  RLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRA 419
            RLPIVGV+IIPR++IMGK DERA+KTLIILISASVCI  IGC+CILILTNGVSKEMKLRA
Sbjct: 421  RLPIVGVVIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRA 480

Query: 420  ELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQ 479
            ELI  LDARR+AEAS+NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV Q
Sbjct: 481  ELIRQLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQ 540

Query: 480  IKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLD 539
            I+K S ALLRLLN ILDLSKVESGK+ LE  EFDL +ELE LVDMFSVQC NHNVETVLD
Sbjct: 541  IRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLD 600

Query: 540  LSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 599
            LSD++P  VRGD  R+ QIF+NLI+NSIKFT++GHII+RGWCEN+++  +      DR+K
Sbjct: 601  LSDDMPALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRK 660

Query: 600  FGRAFRTKLKQQANNAM-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 658
                 +TK  Q  N+   + +  NK+ L FEVDDTGCGID SKW++VFESFEQ DPSTTR
Sbjct: 661  PWAPMKTKQVQHRNHLQKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTR 720

Query: 659  KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP--NT 716
             HGGTGLGL IVR LVNKMGGEIKVV+KN  GTLM+LYL+L       Q    DF     
Sbjct: 721  THGGTGLGLCIVRNLVNKMGGEIKVVQKNGLGTLMRLYLILSTPDTVDQNIQPDFSKYGL 780

Query: 717  VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSS 776
            VV+L+  GS  RMI S+WLRK  ++T+E S+W+ LTQI+R+LL+  S    N FD+ ++ 
Sbjct: 781  VVMLSMYGSTARMITSKWLRKHGIATVEASDWNELTQIIRDLLETGS--RDNSFDSQHNI 838

Query: 777  REPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTT 836
             +PL+AE++NI  + +PV+V+V+DI +LDL++++W+EQLN LD F  KA FAW++ H T+
Sbjct: 839  SDPLRAELSNIVEIKNPVFVIVVDIGVLDLTTNIWKEQLNYLDRFSNKAKFAWLLKHDTS 898

Query: 837  SPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSI 896
            + +KTEL R+G  ++V KPLYK KMIQ+LE  ++ +  G+ N +    N GNG +     
Sbjct: 899  NTVKTELRRKGHVMMVNKPLYKAKMIQILEAVIKNRKRGLCNDLR---NRGNGSDESHDC 955

Query: 897  ANYSASKHQKFRKCSFEFSSICPGE---SSSRREDLIHTMFRERHQI-GSSRRDQPCSSS 952
                 +   +F  CS + SS   GE     S +   +H+   + + I  ++  D   S+S
Sbjct: 956  LEIDPT---QFDTCSSDDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSAS 1012

Query: 953  NSSSN-------------------QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 993
             +  N                    ++ LEG+RILLAEDTP++Q VA  +LEK+GATV+ 
Sbjct: 1013 MTQKNPEEEDWKDRLYSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTA 1072

Query: 994  VPDGLQAVEALN-RMLAAE-----------------SSRRRSLLQGSPSETPDTPRFDLI 1035
            V DG QAV++LN + + A+                 ++R  SL   SP        +DLI
Sbjct: 1073 VWDGQQAVDSLNYKSINAQAPTEEHKSFEEETANKVTTRETSLRNSSP--------YDLI 1124

Query: 1036 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1095
            LMDCQMPKMDGYEAT  IR++E      +IPIVALTAHAM++DE KCL VGM+AYLTKPI
Sbjct: 1125 LMDCQMPKMDGYEATKAIRRAEI-GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPI 1183

Query: 1096 DSERMVSTILRLTK 1109
            D + MVSTIL LTK
Sbjct: 1184 DRKLMVSTILSLTK 1197

Functions as an osmosensor histidine kinase that detects water stress and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Positive regulator of drought and salt stress responses, and abscisic acid (ABA) signaling. Confers drought tolerance, probably by regulating levels of ABA accumulation. Plays a redundant role in regulating plant growth and development. Required for the regulation of desiccation processes during seed formation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3

>sp\|O22267\|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1	Back alignment and function description

>sp\|Q9C5U1\|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1	Back alignment and function description

>sp\|Q54YZ9\|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2	Back alignment and function description

>sp\|Q54U87\|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1	Back alignment and function description

>sp\|Q9C5U0\|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1	Back alignment and function description

>sp\|O14002\|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak2 PE=3 SV=1	Back alignment and function description

>sp\|P0AEC5\|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1	Back alignment and function description

>sp\|P0AEC6\|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1 SV=1	Back alignment and function description

>sp\|P0AEC7\|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1120
255577536		1206	histidine kinase 1 plant, putative [Rici	0.973	0.903	0.649	0.0
297734988		1168	unnamed protein product [Vitis vinifera]	0.971	0.931	0.650	0.0
224133676		1258	histidine kinase osmosensor protein [Pop	0.967	0.861	0.623	0.0
225431092		1235	PREDICTED: histidine kinase 1-like [Viti	0.983	0.892	0.628	0.0
224071327		1149	histidine kinase osmosensor protein [Pop	0.958	0.934	0.651	0.0
449495060		1222	PREDICTED: histidine kinase 1-like [Cucu	0.959	0.879	0.619	0.0
449456825		1221	PREDICTED: histidine kinase 1-like [Cucu	0.959	0.880	0.619	0.0
356502102		1193	PREDICTED: histidine kinase 1-like [Glyc	0.971	0.911	0.613	0.0
356561130		1197	PREDICTED: histidine kinase 1-like [Glyc	0.966	0.904	0.606	0.0
357483831		1218	Histidine kinase osmosensor protein [Med	0.965	0.887	0.597	0.0

>gi\|255577536\|ref\|XP_002529646.1\| histidine kinase 1 plant, putative [Ricinus communis] gi\|223530872\|gb\|EEF32733.1\| histidine kinase 1 plant, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1455 bits (3767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1152 (64%), Positives = 880/1152 (76%), Gaps = 62/1152 (5%)

Query: 5    NNKVMSSNMQPLVVSHLIIVFL-----LLALLSW----VYTTKSLDTLAYGLRYELLQRP 55
            N   +SS     VV   I+V L     LL +L+W     YT +SLDTLA GLRYELLQRP
Sbjct: 67   NTHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKSYTKRSLDTLASGLRYELLQRP 126

Query: 56   LLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALN 115
            +LRMWNI+NST+EIT AQVKLSEYVIKRY+  ATQAEQ++LYEVM+DVTWAMFASRKALN
Sbjct: 127  ILRMWNILNSTSEITTAQVKLSEYVIKRYSNSATQAEQVELYEVMKDVTWAMFASRKALN 186

Query: 116  AITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGN 175
            AITI Y+NGFVQAFHRDHRSNNTFYIYS+L NYSI  + P D+N++SSR+GWNDQSI GN
Sbjct: 187  AITITYRNGFVQAFHRDHRSNNTFYIYSNLVNYSISAAEPSDANMLSSRQGWNDQSIHGN 246

Query: 176  ISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSA 235
            +SAIWYREPLDP TG KIGKAS I PDDLINIAG SQVPDG ASWHVAVSK+T+SPLLSA
Sbjct: 247  LSAIWYREPLDPTTGNKIGKASEIQPDDLINIAGFSQVPDGAASWHVAVSKYTDSPLLSA 306

Query: 236  ALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPL 295
            ALPVWD   SNKSIVAVVGVTTAL SVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPL
Sbjct: 307  ALPVWD--ASNKSIVAVVGVTTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPL 364

Query: 296  LTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFF 355
            L NSS GP L+ AVDS++ +I+MGAQWL+S YG+K P  H +H +NA+LG++QYY+D+FF
Sbjct: 365  LRNSSRGPKLMMAVDSEDDIIRMGAQWLESRYGNKFP--HAVHEENAELGNQQYYIDSFF 422

Query: 356  LNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEM 415
            LNLKRLPIVGVIIIPR YIMGK DERA+KTL+ILISASVCILVIGC+CILILTNGVSKEM
Sbjct: 423  LNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASVCILVIGCVCILILTNGVSKEM 482

Query: 416  KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 475
            KLRAELISHLDARR+AEASNNYKSQFLANMSHELRTPMAA+IGLL+IL SDD LTNEQY+
Sbjct: 483  KLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYA 542

Query: 476  TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 535
            TV QI+K S ALLRLLN ILDLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE
Sbjct: 543  TVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVE 602

Query: 536  TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 595
             VLDLSD +P+ VRGD  RV QIF+NLI+NSIKFT+SGHI++RGWCEN+ TS +TA+ P 
Sbjct: 603  AVLDLSDEMPKLVRGDSARVVQIFANLISNSIKFTTSGHIVLRGWCENISTSNDTAKSPL 662

Query: 596  DRKKFGRAFRTKLKQQANNAMNF-REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 654
            ++KK   A +TKL+QQ N+     +++NK+ L FEVDDTGCGID SKWE+VFESFEQ DP
Sbjct: 663  EQKKLRCALKTKLRQQGNHMKKASKKENKVILWFEVDDTGCGIDPSKWESVFESFEQADP 722

Query: 655  STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADF 713
            STTR HGGTGLGL IVRTLVNKMGGEIKVVKKN PGTLM+LYLLL    + ++Q    DF
Sbjct: 723  STTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLLLRTPRDGTEQHCQIDF 782

Query: 714  P--NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFD 771
               N VV+LA  GS+ R I+SQWLRK  +STL  SEW+ LTQ+LREL        + GF+
Sbjct: 783  ARHNVVVLLALYGSIGRGIMSQWLRKNGLSTLRVSEWNELTQVLRELF--YVRRHNKGFE 840

Query: 772  APYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVV 831
            A  S  EPL++E+ NI+ + DP++V+V+DI LLDLS+D+W+EQLN LD F  KA FAW++
Sbjct: 841  AQCSLNEPLRSEVLNIQDIRDPIFVIVVDIGLLDLSTDIWKEQLNFLDKFSSKATFAWML 900

Query: 832  NHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR---GKILGM------------ 876
            NH T++ IK EL R+G  ++V KPLYK KMIQ+LET ++    K  G             
Sbjct: 901  NHDTSTAIKMELRRKGHILMVNKPLYKAKMIQILETVIKEQQKKSFGAVRSSSKDDDMHD 960

Query: 877  ---------------QNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGE 921
                            + ++ T N  N           + S++Q F+KC  E + +    
Sbjct: 961  CLEIDSTQFDNASSEDSDMAETGNSNNVSSFHHGSRITNPSQYQTFKKCLVELTDM---- 1016

Query: 922  SSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVAC 981
                          +R +  S  + Q  S  N S  +++ LEGLRILLAEDTP++Q VA 
Sbjct: 1017 ---HSRSESSKRSEQRLE-SSCLKGQTSSCLNKSVKEQKALEGLRILLAEDTPVLQRVAT 1072

Query: 982  KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG----SPSETPDTPRFDLILM 1037
             +LEK+GATV  V DGLQAV+ALN  L+   SRR S+ Q     S +E  D P +DLILM
Sbjct: 1073 IMLEKMGATVIAVGDGLQAVDALNCRLSGRESRRESVFQDENNTSQTEMLDPPPYDLILM 1132

Query: 1038 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS 1097
            DCQMPKMDGYEAT  IRKSE+  G  +IPIVALTAHAM++DE KCL VGM+AYLTKPID 
Sbjct: 1133 DCQMPKMDGYEATKAIRKSEAGSGL-HIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDY 1191

Query: 1098 ERMVSTILRLTK 1109
            + MVSTIL LTK
Sbjct: 1192 KLMVSTILSLTK 1203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734988\|emb\|CBI17350.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224133676\|ref\|XP_002327653.1\| histidine kinase osmosensor protein [Populus trichocarpa] gi\|222836738\|gb\|EEE75131.1\| histidine kinase osmosensor protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225431092\|ref\|XP_002265248.1\| PREDICTED: histidine kinase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224071327\|ref\|XP_002303406.1\| histidine kinase osmosensor protein [Populus trichocarpa] gi\|222840838\|gb\|EEE78385.1\| histidine kinase osmosensor protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449495060\|ref\|XP_004159723.1\| PREDICTED: histidine kinase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449456825\|ref\|XP_004146149.1\| PREDICTED: histidine kinase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356502102\|ref\|XP_003519860.1\| PREDICTED: histidine kinase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356561130\|ref\|XP_003548838.1\| PREDICTED: histidine kinase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357483831\|ref\|XP_003612202.1\| Histidine kinase osmosensor protein [Medicago truncatula] gi\|355513537\|gb\|AES95160.1\| Histidine kinase osmosensor protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1120
TAIR\|locus:2827836		1207	HK1 "histidine kinase 1" [Arab	0.776	0.720	0.612	0.0
TAIR\|locus:2061971		1122	CKI1 "CYTOKININ-INDEPENDENT 1"	0.426	0.426	0.280	6.6e-56
TIGR_CMR\|SO_0859		1765	SO_0859 "sensory box histidine	0.143	0.091	0.384	3.2e-51
ASPGD\|ASPL0000074067		1297	nikA [Emericella nidulans (tax	0.139	0.120	0.333	4.9e-48
DICTYBASE\|DDB_G0277883		2062	dhkJ "histidine kinase J" [Dic	0.141	0.076	0.371	1.7e-45
TIGR_CMR\|GSU_2314		1025	GSU_2314 "sensory box histidin	0.145	0.159	0.329	2.6e-45
UNIPROTKB\|Q9KPC0		927	VC_2453 "Sensor histidine kina	0.133	0.160	0.424	3.3e-45
TIGR_CMR\|VC_2453		927	VC_2453 "sensor histidine kina	0.133	0.160	0.424	3.3e-45
TIGR_CMR\|SPO_0132		739	SPO_0132 "sensor histidine kin	0.146	0.221	0.386	5.5e-44
TIGR_CMR\|SO_3457		935	SO_3457 "sensor histidine kina	0.135	0.162	0.384	1e-43

TAIR\|locus:2827836 HK1 "histidine kinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2724 (964.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 546/891 (61%), Positives = 672/891 (75%)

Query:    34 VYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQ 93
             +YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVKLSEYVIK+Y+KP TQ E 
Sbjct:   105 IYTKQSLQTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVKLSEYVIKKYDKPTTQEEL 164

Query:    94 IQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTS 153
             +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD  S++TFYI+SDL NYSI  +
Sbjct:   165 VEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPASSSTFYIFSDLKNYSISGT 224

Query:   154 GPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQV 213
             GP D   +S   GWN++SI GN+SAIWY++ LDP+TGE +GK   IPPDDLINIAGISQV
Sbjct:   225 GPED---VS---GWNNKSIHGNMSAIWYQQQLDPVTGENLGKPLKIPPDDLINIAGISQV 278

Query:   214 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVH 273
             PDG ASWHV VSK+ +SPLLSAALPV+D   SNKSIVAVVGVTTAL SVGQLM++LVEVH
Sbjct:   279 PDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVAVVGVTTALYSVGQLMRDLVEVH 336

Query:   274 SGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPP 333
              GHIYLTSQEGYLLATST+ PLL N+S GP L+KA DS+  VI+ GAQWL+  YGSK P 
Sbjct:   337 GGHIYLTSQEGYLLATSTDGPLLKNTSNGPQLMKATDSEEWVIKSGAQWLEKTYGSKRP- 395

Query:   334 GHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISAS 393
              HV+H +N KLG ++YY+D+F+LNLKRLPIVGV+IIPR++IMGK DERA+KTLIILISAS
Sbjct:   396 -HVVHAENVKLGDQRYYIDSFYLNLKRLPIVGVVIIPRKFIMGKVDERAFKTLIILISAS 454

Query:   394 XXXXXXXXXXXXXXTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPM 453
                           TNGVSKEMKLRAELI  LDARR+AEAS+NYKSQFLANMSHELRTPM
Sbjct:   455 VCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASSNYKSQFLANMSHELRTPM 514

Query:   454 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAXXXXXXXXXXXSKVESGKMELENTEFD 513
             AA+IGLL+IL SDD L+NEQY+TV QI+K S A           SKVESGK+ LE  EFD
Sbjct:   515 AAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFD 574

Query:   514 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 573
             L +ELE LVDMFSVQC NHNVETVLDLSD++P  VRGD  R+ QIF+NLI+NSIKFT++G
Sbjct:   575 LGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARLVQIFANLISNSIKFTTTG 634

Query:   574 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM-NFREDNKLALCFEVDD 632
             HII+RGWCEN+++  +      DR+K     +TK  Q  N+   + +  NK+ L FEVDD
Sbjct:   635 HIILRGWCENINSLHDEMSVSVDRRKPWAPMKTKQVQHRNHLQKSCKNANKMVLWFEVDD 694

Query:   633 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL 692
             TGCGID SKW++VFESFEQ DPSTTR HGGTGLGL IVR LVNKMGGEIKVV+KN  GTL
Sbjct:   695 TGCGIDPSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQKNGLGTL 754

Query:   693 MQLYLLLGASSESKQIYDADFPN--TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHG 750
             M+LYL+L       Q    DF     VV+L+  GS  RMI S+WLRK  ++T+E S+W+ 
Sbjct:   755 MRLYLILSTPDTVDQNIQPDFSKYGLVVMLSMYGSTARMITSKWLRKHGIATVEASDWNE 814

Query:   751 LTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIAXXXXXXXX 810
             LTQI+R+LL+  S    N FD+ ++  +PL+AE++NI  + +PV+V+V+DI         
Sbjct:   815 LTQIIRDLLETGS--RDNSFDSQHNISDPLRAELSNIVEIKNPVFVIVVDIGVLDLTTNI 872

Query:   811 WREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870
             W+EQLN LD F  KA FAW++ H T++ +KTEL R+G  ++V KPLYK KMIQ+LE  ++
Sbjct:   873 WKEQLNYLDRFSNKAKFAWLLKHDTSNTVKTELRRKGHVMMVNKPLYKAKMIQILEAVIK 932

Query:   871 GKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGE 921
              +  G+ N +    N GNG +          ++   F  CS + SS   GE
Sbjct:   933 NRKRGLCNDLR---NRGNGSDESHDCLEIDPTQ---FDTCSSDDSSETSGE 977

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005034 "osmosensor activity" evidence=IGI;IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0010431 "seed maturation" evidence=IMP

GO:0010375 "stomatal complex patterning" evidence=IMP

TAIR\|locus:2061971 CKI1 "CYTOKININ-INDEPENDENT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0859 SO_0859 "sensory box histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000074067 nikA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0277883 dhkJ "histidine kinase J" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2314 GSU_2314 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_3457 SO_3457 "sensor histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SXL4	AHK1_ARATH	2, ., 7, ., 1, 3, ., 3	0.5892	0.9589	0.8898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.13	0.963
3rd Layer	2.7.13.3	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00570069	histidine kinase osmosensor protein (1259 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1120
PRK11107		919	PRK11107, PRK11107, hybrid sensory histidine kinas	3e-52
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	2e-49
COG0642		336	COG0642, BaeS, Signal transduction histidine kinas	2e-44
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	3e-38
PRK11466		914	PRK11466, PRK11466, hybrid sensory histidine kinas	1e-36
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	1e-30
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	3e-30
TIGR02966		333	TIGR02966, phoR_proteo, phosphate regulon sensor k	7e-28
cd00156		113	cd00156, REC, Signal receiver domain; originally t	1e-27
COG0784		130	COG0784, CheY, FOG: CheY-like receiver [Signal tra	3e-26
pfam00072		111	pfam00072, Response_reg, Response regulator receiv	5e-25
COG2205		890	COG2205, KdpD, Osmosensitive K+ channel histidine	4e-24
smart00387		111	smart00387, HATPase_c, Histidine kinase-like ATPas	4e-23
PRK09959		1197	PRK09959, PRK09959, hybrid sensory histidine kinas	6e-22
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	2e-21
TIGR01386		457	TIGR01386, cztS_silS_copS, heavy metal sensor kina	9e-21
COG5002		459	COG5002, VicK, Signal transduction histidine kinas	6e-20
PRK11107		919	PRK11107, PRK11107, hybrid sensory histidine kinas	8e-20
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	6e-19
PRK10549		466	PRK10549, PRK10549, signal transduction histidine-	9e-18
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	3e-17
COG4251		750	COG4251, COG4251, Bacteriophytochrome (light-regul	9e-17
PRK10604		433	PRK10604, PRK10604, sensor protein RstB; Provision	2e-16
smart00388		66	smart00388, HisKA, His Kinase A (phosphoacceptor)	6e-16
pfam00512		66	pfam00512, HisKA, His Kinase A (phospho-acceptor)	7e-16
COG0745		229	COG0745, OmpR, Response regulators consisting of a	1e-15
PRK10490		895	PRK10490, PRK10490, sensor protein KdpD; Provision	7e-15
PRK11100		475	PRK11100, PRK11100, sensory histidine kinase CreC;	1e-14
cd00082		65	cd00082, HisKA, Histidine Kinase A (dimerization/p	3e-14
PRK11006		430	PRK11006, phoR, phosphate regulon sensor protein;	2e-13
PRK11360		607	PRK11360, PRK11360, sensory histidine kinase AtoS;	9e-13
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	1e-12
PRK09835		482	PRK09835, PRK09835, sensor kinase CusS; Provisiona	1e-12
PRK15479		221	PRK15479, PRK15479, transcriptional regulatory pro	7e-12
COG2197		211	COG2197, CitB, Response regulator containing a Che	1e-11
PRK09467		435	PRK09467, envZ, osmolarity sensor protein; Provisi	6e-11
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	7e-11
PRK09303		380	PRK09303, PRK09303, adaptive-response sensory kina	8e-11
COG2204		464	COG2204, AtoC, Response regulator containing CheY-	3e-10
COG3437		360	COG3437, COG3437, Response regulator containing a	9e-10
PRK13837		828	PRK13837, PRK13837, two-component VirA-like sensor	3e-09
TIGR02154		226	TIGR02154, PhoB, phosphate regulon transcriptional	5e-09
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	1e-08
COG3852		363	COG3852, NtrB, Signal transduction histidine kinas	2e-08
smart00448		55	smart00448, REC, cheY-homologous receiver domain	2e-08
PRK09959		1197	PRK09959, PRK09959, hybrid sensory histidine kinas	1e-07
PRK10364		457	PRK10364, PRK10364, sensor protein ZraS; Provision	1e-07
COG3279		244	COG3279, LytT, Response regulator of the LytR/AlgR	1e-07
COG3706		435	COG3706, PleD, Response regulator containing a Che	4e-07
PRK10161		229	PRK10161, PRK10161, transcriptional regulator PhoB	6e-07
COG3707		194	COG3707, AmiR, Response regulator with putative an	9e-07
PRK09468		239	PRK09468, ompR, osmolarity response regulator; Pro	9e-07
COG3290		537	COG3290, CitA, Signal transduction histidine kinas	1e-06
TIGR03785		703	TIGR03785, marine_sort_HK, proteobacterial dedicat	1e-06
TIGR01387		218	TIGR01387, cztR_silR_copR, heavy metal response re	2e-06
PRK10618		894	PRK10618, PRK10618, phosphotransfer intermediate p	2e-06
PRK10955		232	PRK10955, PRK10955, DNA-binding transcriptional re	2e-06
PRK12555		337	PRK12555, PRK12555, chemotaxis-specific methyleste	3e-06
CHL00148		240	CHL00148, orf27, Ycf27; Reviewed	3e-06
COG3947		361	COG3947, COG3947, Response regulator containing Ch	4e-06
PRK09581		457	PRK09581, pleD, response regulator PleD; Reviewed	5e-06
PRK09470		461	PRK09470, cpxA, two-component sensor protein; Prov	1e-05
PRK15115		444	PRK15115, PRK15115, response regulator GlrR; Provi	2e-05
PRK11361		457	PRK11361, PRK11361, acetoacetate metabolism regula	3e-05
PRK09483		217	PRK09483, PRK09483, response regulator; Provisiona	5e-05
PRK11073		348	PRK11073, glnL, nitrogen regulation protein NR(II)	7e-05
PRK15053		545	PRK15053, dpiB, sensor histidine kinase DpiB; Prov	7e-05
PRK11466		914	PRK11466, PRK11466, hybrid sensory histidine kinas	1e-04
COG4191		603	COG4191, COG4191, Signal transduction histidine ki	2e-04
PRK10710		240	PRK10710, PRK10710, DNA-binding transcriptional re	4e-04
PRK10755		356	PRK10755, PRK10755, sensor protein BasS/PmrB; Prov	5e-04
TIGR02916		679	TIGR02916, PEP_his_kin, putative PEP-CTERM system	5e-04
PLN03029		222	PLN03029, PLN03029, type-a response regulator prot	8e-04
TIGR01818		463	TIGR01818, ntrC, nitrogen regulation protein NR(I)	9e-04
PRK11697		238	PRK11697, PRK11697, putative two-component respons	9e-04
COG2201		350	COG2201, CheB, Chemotaxis response regulator conta	0.001
PRK10365		441	PRK10365, PRK10365, transcriptional regulatory pro	0.001
PRK10336		219	PRK10336, PRK10336, DNA-binding transcriptional re	0.001
PRK10815		485	PRK10815, PRK10815, sensor protein PhoQ; Provision	0.001
PRK11517		223	PRK11517, PRK11517, transcriptional regulatory pro	0.001
PRK10610		129	PRK10610, PRK10610, chemotaxis regulatory protein	0.003
TIGR02875		262	TIGR02875, spore_0_A, sporulation transcription fa	0.004
PRK11083		228	PRK11083, PRK11083, DNA-binding response regulator	0.004
PRK13557		540	PRK13557, PRK13557, histidine kinase; Provisional	0.004

>gnl\|CDD\|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

 Score =  198 bits (507), Expect = 3e-52
 Identities = 100/261 (38%), Positives = 152/261 (58%), Gaps = 43/261 (16%)

Query: 425 LD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKK 482
           LD A+++A+ +   KS+FLANMSHELRTP+  +IG   + LK+   LT  Q   +  I++
Sbjct: 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT--PLTPTQRDYLQTIER 336

Query: 483 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH--NVETVLDL 540
           S+  LL ++N ILD SK+E+GK+ LEN  F L++ L+E+V + +   S H   +E  L++
Sbjct: 337 SANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAH--SAHEKGLELTLNI 394

Query: 541 SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 600
             ++P NV GDP R+ QI +NL+ N+IKFT SG+I I                       
Sbjct: 395 DPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDIL---------------------- 432

Query: 601 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH 660
                  ++ +A        + K+ L  ++ DTG GI + +   +F++F Q D S +R+H
Sbjct: 433 -------VELRAL------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRH 479

Query: 661 GGTGLGLSIVRTLVNKMGGEI 681
           GGTGLGL I + LVN+MGG+I
Sbjct: 480 GGTGLGLVITQKLVNEMGGDI 500

Length = 919

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl\|CDD\|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR	Back alignment and domain information

>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>gnl\|CDD\|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|200976 pfam00072, Response_reg, Response regulator receiver domain	Back alignment and domain information

>gnl\|CDD\|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|214643 smart00387, HATPase_c, Histidine kinase-like ATPases	Back alignment and domain information

>gnl\|CDD\|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase	Back alignment and domain information

>gnl\|CDD\|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl\|CDD\|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236724 PRK10604, PRK10604, sensor protein RstB; Provisional	Back alignment and domain information

>gnl\|CDD\|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>gnl\|CDD\|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain	Back alignment and domain information

>gnl\|CDD\|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional	Back alignment and domain information

>gnl\|CDD\|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	Back alignment and domain information

>gnl\|CDD\|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>gnl\|CDD\|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional	Back alignment and domain information

>gnl\|CDD\|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>gnl\|CDD\|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|236531 PRK09467, envZ, osmolarity sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated	Back alignment and domain information

>gnl\|CDD\|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl\|CDD\|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|214668 smart00448, REC, cheY-homologous receiver domain	Back alignment and domain information

>gnl\|CDD\|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>gnl\|CDD\|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional	Back alignment and domain information

>gnl\|CDD\|225818 COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional	Back alignment and domain information

>gnl\|CDD\|226230 COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|181883 PRK09468, ompR, osmolarity response regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>gnl\|CDD\|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator	Back alignment and domain information

>gnl\|CDD\|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>gnl\|CDD\|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>gnl\|CDD\|237135 PRK12555, PRK12555, chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|214376 CHL00148, orf27, Ycf27; Reviewed	Back alignment and domain information

>gnl\|CDD\|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236577 PRK09581, pleD, response regulator PleD; Reviewed	Back alignment and domain information

>gnl\|CDD\|236532 PRK09470, cpxA, two-component sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|185070 PRK15115, PRK15115, response regulator GlrR; Provisional	Back alignment and domain information

>gnl\|CDD\|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>gnl\|CDD\|236538 PRK09483, PRK09483, response regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>gnl\|CDD\|185013 PRK15053, dpiB, sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>gnl\|CDD\|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>gnl\|CDD\|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182665 PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional	Back alignment and domain information

>gnl\|CDD\|236751 PRK10755, PRK10755, sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>gnl\|CDD\|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase	Back alignment and domain information

>gnl\|CDD\|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I)	Back alignment and domain information

>gnl\|CDD\|236956 PRK11697, PRK11697, putative two-component response-regulatory protein YehT; Provisional	Back alignment and domain information

>gnl\|CDD\|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>gnl\|CDD\|182387 PRK10336, PRK10336, DNA-binding transcriptional regulator QseB; Provisional	Back alignment and domain information

>gnl\|CDD\|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional	Back alignment and domain information

>gnl\|CDD\|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>gnl\|CDD\|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>gnl\|CDD\|131922 TIGR02875, spore_0_A, sporulation transcription factor Spo0A	Back alignment and domain information

>gnl\|CDD\|236838 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>gnl\|CDD\|237425 PRK13557, PRK13557, histidine kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1120
PRK10841		924	hybrid sensory kinase in two-component regulatory	100.0
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	100.0
PRK15347		921	two component system sensor kinase SsrA; Provision	100.0
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	100.0
PRK11091		779	aerobic respiration control sensor protein ArcB; P	100.0
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	100.0
PRK09959		1197	hybrid sensory histidine kinase in two-component r	100.0
KOG0519		786	consensus Sensory transduction histidine kinase [S	100.0
PRK10618		894	phosphotransfer intermediate protein in two-compon	100.0
PRK13837		828	two-component VirA-like sensor kinase; Provisional	100.0
COG5002		459	VicK Signal transduction histidine kinase [Signal	100.0
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	100.0
PRK13557		540	histidine kinase; Provisional	100.0
PRK09303		380	adaptive-response sensory kinase; Validated	100.0
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	100.0
COG4191		603	Signal transduction histidine kinase regulating C4	100.0
PRK10604		433	sensor protein RstB; Provisional	100.0
PRK10815		485	sensor protein PhoQ; Provisional	100.0
PRK10364		457	sensor protein ZraS; Provisional	100.0
PRK09835		482	sensor kinase CusS; Provisional	100.0
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	100.0
PRK10549		466	signal transduction histidine-protein kinase BaeS;	100.0
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	99.97
PRK09470		461	cpxA two-component sensor protein; Provisional	99.97
PRK10755		356	sensor protein BasS/PmrB; Provisional	99.97
PRK10490		895	sensor protein KdpD; Provisional	99.97
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	99.97
PRK11100		475	sensory histidine kinase CreC; Provisional	99.97
PRK10337		449	sensor protein QseC; Provisional	99.97
PRK09467		435	envZ osmolarity sensor protein; Provisional	99.97
COG3852		363	NtrB Signal transduction histidine kinase, nitroge	99.96
COG4251		750	Bacteriophytochrome (light-regulated signal transd	99.96
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	99.96
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	99.95
COG0642		336	BaeS Signal transduction histidine kinase [Signal	99.94
PRK11360		607	sensory histidine kinase AtoS; Provisional	99.94
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	99.92
PRK11086		542	sensory histidine kinase DcuS; Provisional	99.92
PRK13560		807	hypothetical protein; Provisional	99.91
COG5000		712	NtrY Signal transduction histidine kinase involved	99.9
PRK11644		495	sensory histidine kinase UhpB; Provisional	99.89
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	99.88
COG4192		673	Signal transduction histidine kinase regulating ph	99.86
COG0745		229	OmpR Response regulators consisting of a CheY-like	99.86
COG3290		537	CitA Signal transduction histidine kinase regulati	99.83
PRK13559		361	hypothetical protein; Provisional	99.8
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	99.79
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	99.76
COG3706		435	PleD Response regulator containing a CheY-like rec	99.72
COG3437		360	Response regulator containing a CheY-like receiver	99.72
COG4753		475	Response regulator containing CheY-like receiver d	99.7
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	99.7
PF00072		112	Response_reg: Response regulator receiver domain;	99.7
COG2204		464	AtoC Response regulator containing CheY-like recei	99.69
COG0784		130	CheY FOG: CheY-like receiver [Signal transduction	99.67
COG4566		202	TtrR Response regulator [Signal transduction mecha	99.63
COG2197		211	CitB Response regulator containing a CheY-like rec	99.62
COG4565		224	CitB Response regulator of citrate/malate metaboli	99.61
PRK10547		670	chemotaxis protein CheA; Provisional	99.59
PLN03029		222	type-a response regulator protein; Provisional	99.59
PRK09581		457	pleD response regulator PleD; Reviewed	99.57
PRK10046		225	dpiA two-component response regulator DpiA; Provis	99.56
PRK10816		223	DNA-binding transcriptional regulator PhoP; Provis	99.55
PRK11173		237	two-component response regulator; Provisional	99.54
PRK10529		225	DNA-binding transcriptional activator KdpE; Provis	99.54
PRK09836		227	DNA-binding transcriptional activator CusR; Provis	99.53
COG3947		361	Response regulator containing CheY-like receiver a	99.53
PRK10643		222	DNA-binding transcriptional regulator BasR; Provis	99.51
PRK10766		221	DNA-binding transcriptional regulator TorR; Provis	99.51
PRK09468		239	ompR osmolarity response regulator; Provisional	99.51
PRK10161		229	transcriptional regulator PhoB; Provisional	99.5
TIGR02154		226	PhoB phosphate regulon transcriptional regulatory	99.49
PRK13856		241	two-component response regulator VirG; Provisional	99.49
PRK10701		240	DNA-binding transcriptional regulator RstA; Provis	99.49
PRK10430		239	DNA-binding transcriptional activator DcuR; Provis	99.49
PRK10336		219	DNA-binding transcriptional regulator QseB; Provis	99.48
PRK10955		232	DNA-binding transcriptional regulator CpxR; Provis	99.48
PRK04184		535	DNA topoisomerase VI subunit B; Validated	99.48
TIGR02875		262	spore_0_A sporulation transcription factor Spo0A.	99.48
PRK11517		223	transcriptional regulatory protein YedW; Provision	99.47
TIGR03787		227	marine_sort_RR proteobacterial dedicated sortase s	99.46
PRK11083		228	DNA-binding response regulator CreB; Provisional	99.44
TIGR01387		218	cztR_silR_copR heavy metal response regulator. Mem	99.43
PRK10840		216	transcriptional regulator RcsB; Provisional	99.42
CHL00148		240	orf27 Ycf27; Reviewed	99.42
PRK09958		204	DNA-binding transcriptional activator EvgA; Provis	99.41
PRK14084		246	two-component response regulator; Provisional	99.4
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	99.4
COG4567		182	Response regulator consisting of a CheY-like recei	99.38
PRK10923		469	glnG nitrogen regulation protein NR(I); Provisiona	99.37
PRK15115		444	response regulator GlrR; Provisional	99.37
PRK09483		217	response regulator; Provisional	99.37
PRK12555		337	chemotaxis-specific methylesterase; Provisional	99.36
PRK10365		441	transcriptional regulatory protein ZraR; Provision	99.35
PRK10360		196	DNA-binding transcriptional activator UhpA; Provis	99.35
PRK09935		210	transcriptional regulator FimZ; Provisional	99.35
PRK11361		457	acetoacetate metabolism regulatory protein AtoC; P	99.34
PRK11697		238	putative two-component response-regulatory protein	99.34
TIGR02915		445	PEP_resp_reg putative PEP-CTERM system response re	99.34
PRK15479		221	transcriptional regulatory protein TctD; Provision	99.33
PRK10710		240	DNA-binding transcriptional regulator BaeR; Provis	99.33
TIGR01818		463	ntrC nitrogen regulation protein NR(I). This model	99.32
PF00512		68	HisKA: His Kinase A (phospho-acceptor) domain; Int	99.29
PRK00742		354	chemotaxis-specific methylesterase; Provisional	99.28
PRK10100		216	DNA-binding transcriptional regulator CsgD; Provis	99.28
COG2201		350	CheB Chemotaxis response regulator containing a Ch	99.27
PRK09390		202	fixJ response regulator FixJ; Provisional	99.27
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	99.25
PRK09581		457	pleD response regulator PleD; Reviewed	99.24
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	99.24
PRK10610		129	chemotaxis regulatory protein CheY; Provisional	99.22
PRK11475		207	DNA-binding transcriptional activator BglJ; Provis	99.2
PRK13435		145	response regulator; Provisional	99.2
PRK13558		665	bacterio-opsin activator; Provisional	99.19
PRK15369		211	two component system sensor kinase SsrB; Provision	99.18
PRK10403		215	transcriptional regulator NarP; Provisional	99.18
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	99.18
PRK10651		216	transcriptional regulator NarL; Provisional	99.17
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	99.17
COG3707		194	AmiR Response regulator with putative antiterminat	99.15
PRK15411		207	rcsA colanic acid capsular biosynthesis activation	99.14
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	99.08
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	99.08
PRK09191		261	two-component response regulator; Provisional	99.06
PRK10693		303	response regulator of RpoS; Provisional	99.04
COG4585		365	Signal transduction histidine kinase [Signal trans	99.0
PRK03660		146	anti-sigma F factor; Provisional	99.0
COG3851		497	UhpB Signal transduction histidine kinase, glucose	98.94
cd00156		113	REC Signal receiver domain; originally thought to	98.93
COG2972		456	Predicted signal transduction protein with a C-ter	98.81
COG3920		221	Signal transduction histidine kinase [Signal trans	98.8
KOG0519		786	consensus Sensory transduction histidine kinase [S	98.79
PRK15029		755	arginine decarboxylase; Provisional	98.76
COG3279		244	LytT Response regulator of the LytR/AlgR family [T	98.74
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	98.65
COG4564		459	Signal transduction histidine kinase [Signal trans	98.63
PRK04069		161	serine-protein kinase RsbW; Provisional	98.61
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	98.47
COG3275		557	LytS Putative regulator of cell autolysis [Signal	98.45
smart00388		66	HisKA His Kinase A (phosphoacceptor) domain. Dimer	98.43
PRK15426		570	putative diguanylate cyclase YedQ; Provisional	98.41
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	98.35
PF14501		100	HATPase_c_5: GHKL domain	98.21
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	98.18
cd00082		65	HisKA Histidine Kinase A (dimerization/phosphoacce	98.16
COG3706		435	PleD Response regulator containing a CheY-like rec	98.16
PF02743		81	Cache_1: Cache domain; InterPro: IPR004010 Cache i	98.02
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	97.83
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	97.6
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	97.41
smart00448		55	REC cheY-homologous receiver domain. CheY regulate	96.7
PF06490		109	FleQ: Flagellar regulatory protein FleQ; InterPro:	96.55
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	96.29
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	96.07
cd02071		122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	95.22
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	94.87
PRK02261		137	methylaspartate mutase subunit S; Provisional	94.8
TIGR00640		132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	94.04
cd02067		119	B12-binding B12 binding domain (B12-BD). This doma	92.62
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	91.25
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	91.17
PF03709		115	OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal	89.69
TIGR03815		322	CpaE_hom_Actino helicase/secretion neighborhood Cp	89.66
COG4999		140	Uncharacterized domain of BarA-like signal transdu	88.23
PRK05218		613	heat shock protein 90; Provisional	88.0
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	87.94
COG5381		184	Uncharacterized protein conserved in bacteria [Fun	86.84
TIGR01501		134	MthylAspMutase methylaspartate mutase, S subunit.	86.6
COG2185		143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	86.36
PRK05644		638	gyrB DNA gyrase subunit B; Validated	86.31
cd02072		128	Glm_B12_BD B12 binding domain of glutamate mutase	85.91
PRK14083		601	HSP90 family protein; Provisional	85.83
cd04728		248	ThiG Thiazole synthase (ThiG) is the tetrameric en	85.35
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	85.14
PRK00208		250	thiG thiazole synthase; Reviewed	84.92
PF02310		121	B12-binding: B12 binding domain; InterPro: IPR0061	84.06
PF00072		112	Response_reg: Response regulator receiver domain;	83.77
PRK11677		134	hypothetical protein; Provisional	81.01
cd02070		201	corrinoid_protein_B12-BD B12 binding domain of cor	80.19

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

Probab=100.00  E-value=5.9e-59  Score=596.51  Aligned_cols=484  Identities=26%  Similarity=0.411  Sum_probs=362.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001222          428 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL  507 (1120)
Q Consensus       428 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l  507 (1120)
                      +++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+++..|..++.+|..+|+++||++|++++.+.+
T Consensus       437 ~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~-~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l  515 (924)
T PRK10841        437 AQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQT-KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI  515 (924)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            34456778889999999999999999999999999864 45678888899999999999999999999999999999999


Q ss_pred             cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222          508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS  587 (1120)
Q Consensus       508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~  587 (1120)
                      +.++|++.+++++++..+...+..|++.+.+.++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+...     
T Consensus       516 ~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~-----  590 (924)
T PRK10841        516 EPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD-----  590 (924)
T ss_pred             eeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe-----
Confidence            999999999999999999999999999999988888887899999999999999999999999999988765321     


Q ss_pred             CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222          588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL  667 (1120)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL  667 (1120)
                                                         ...+.|+|.|||+||+++.+++||+|||+.+....+..+|+||||
T Consensus       591 -----------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL  635 (924)
T PRK10841        591 -----------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL  635 (924)
T ss_pred             -----------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhH
Confidence                                               124789999999999999999999999998876666778999999


Q ss_pred             HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001222          668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE  747 (1120)
Q Consensus       668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  747 (1120)
                      +||++|+++|||+|+++|.+|+||+|+|.||+...............+..+.+..........+..|+..+|..+.....
T Consensus       636 ~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~  715 (924)
T PRK10841        636 AICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEG  715 (924)
T ss_pred             HHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEccc
Confidence            99999999999999999999999999999998654332222333445666777777777778888899988876543321


Q ss_pred             hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222          748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF  827 (1120)
Q Consensus       748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~  827 (1120)
                      ...                                         .+..+++.|.... ....     ....        .
T Consensus       716 ~~~-----------------------------------------~~~d~~i~d~~~~-~~~~-----~~~~--------~  740 (924)
T PRK10841        716 QEP-----------------------------------------TPEDVLITDDPVQ-KKWQ-----GRAV--------I  740 (924)
T ss_pred             ccC-----------------------------------------CcCcEEEEcCccc-cccc-----hhhh--------h
Confidence            000                                         0011122121000 0000     0000        0


Q ss_pred             EeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhc
Q 001222          828 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF  907 (1120)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  907 (1120)
                      .+...+...   .   ...........|.....+...+.........                                 
T Consensus       741 ~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------------------------------  781 (924)
T PRK10841        741 TFCRRHIGI---P---LEIAPGEWVHSTATPHELPALLARIYRIELE---------------------------------  781 (924)
T ss_pred             hhhhccccC---h---hhcccCceeeccCChHHHHHHHHHHhhcccc---------------------------------
Confidence            000000000   0   0000011122222222222222221110000                                 


Q ss_pred             cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhc
Q 001222          908 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV  987 (1120)
Q Consensus       908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~  987 (1120)
                                                      ........+     ..........+++||||||++.++..+..+|++.
T Consensus       782 --------------------------------~~~~~~~~~-----~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~  824 (924)
T PRK10841        782 --------------------------------SDDSANALP-----STDKAVSDNDDMMILVVDDHPINRRLLADQLGSL  824 (924)
T ss_pred             --------------------------------ccccccccc-----ccccccccCCCCEEEEECCCHHHHHHHHHHHHHc
Confidence                                            000000000     0000011124679999999999999999999999


Q ss_pred             CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222          988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus       988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
                      ||.|..+.||.+|++.+..                       ..||+||||++||+|||++++++||+..     ..+||
T Consensus       825 G~~v~~a~~g~eal~~l~~-----------------------~~~DlVl~D~~mP~mdG~el~~~ir~~~-----~~~pI  876 (924)
T PRK10841        825 GYQCKTANDGVDALNVLSK-----------------------NHIDIVLTDVNMPNMDGYRLTQRLRQLG-----LTLPV  876 (924)
T ss_pred             CCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence            9999999999999999864                       3799999999999999999999999853     35899


Q ss_pred             EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222         1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus      1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
                      |++|++...++..+|+++|||+||.||++.++|...|.++..+.
T Consensus       877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~  920 (924)
T PRK10841        877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV  920 (924)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999887654

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>COG4566 TtrR Response regulator [Signal transduction mechanisms]	Back alignment and domain information

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PLN03029 type-a response regulator protein; Provisional	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>PRK10046 dpiA two-component response regulator DpiA; Provisional	Back alignment and domain information

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional	Back alignment and domain information

>PRK11173 two-component response regulator; Provisional	Back alignment and domain information

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional	Back alignment and domain information

>PRK09836 DNA-binding transcriptional activator CusR; Provisional	Back alignment and domain information

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional	Back alignment and domain information

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional	Back alignment and domain information

>PRK09468 ompR osmolarity response regulator; Provisional	Back alignment and domain information

>PRK10161 transcriptional regulator PhoB; Provisional	Back alignment and domain information

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>PRK13856 two-component response regulator VirG; Provisional	Back alignment and domain information

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional	Back alignment and domain information

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional	Back alignment and domain information

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional	Back alignment and domain information

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>TIGR02875 spore_0_A sporulation transcription factor Spo0A	Back alignment and domain information

>PRK11517 transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator	Back alignment and domain information

>PRK11083 DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>TIGR01387 cztR_silR_copR heavy metal response regulator	Back alignment and domain information

>PRK10840 transcriptional regulator RcsB; Provisional	Back alignment and domain information

>CHL00148 orf27 Ycf27; Reviewed	Back alignment and domain information

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional	Back alignment and domain information

>PRK14084 two-component response regulator; Provisional	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional	Back alignment and domain information

>PRK15115 response regulator GlrR; Provisional	Back alignment and domain information

>PRK09483 response regulator; Provisional	Back alignment and domain information

>PRK12555 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>PRK10365 transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional	Back alignment and domain information

>PRK09935 transcriptional regulator FimZ; Provisional	Back alignment and domain information

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>PRK11697 putative two-component response-regulatory protein YehT; Provisional	Back alignment and domain information

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator	Back alignment and domain information

>PRK15479 transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional	Back alignment and domain information

>TIGR01818 ntrC nitrogen regulation protein NR(I)	Back alignment and domain information

>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK00742 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional	Back alignment and domain information

>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>PRK09390 fixJ response regulator FixJ; Provisional	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK10610 chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional	Back alignment and domain information

>PRK13435 response regulator; Provisional	Back alignment and domain information

>PRK13558 bacterio-opsin activator; Provisional	Back alignment and domain information

>PRK15369 two component system sensor kinase SsrB; Provisional	Back alignment and domain information

>PRK10403 transcriptional regulator NarP; Provisional	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK10651 transcriptional regulator NarL; Provisional	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>PRK09191 two-component response regulator; Provisional	Back alignment and domain information

>PRK10693 response regulator of RpoS; Provisional	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	Back alignment and domain information

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15029 arginine decarboxylase; Provisional	Back alignment and domain information

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]	Back alignment and domain information

>smart00388 HisKA His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>PRK15426 putative diguanylate cyclase YedQ; Provisional	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PF14501 HATPase_c_5: GHKL domain	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>smart00448 REC cheY-homologous receiver domain	Back alignment and domain information

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PRK02261 methylaspartate mutase subunit S; Provisional	Back alignment and domain information

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain	Back alignment and domain information

>cd02067 B12-binding B12 binding domain (B12-BD)	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure	Back alignment and domain information

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein	Back alignment and domain information

>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit	Back alignment and domain information

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00208 thiG thiazole synthase; Reviewed	Back alignment and domain information

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK11677 hypothetical protein; Provisional	Back alignment and domain information

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1120
3mm4_A		206	Crystal Structure Of The Receiver Domain Of The His		5e-16
3c97_A		140	Crystal Structure Of The Response Regulator Receive		1e-14
2c2a_A		258	Structure Of The Entire Cytoplasmic Portion Of A Se		1e-13
3dge_A		258	Structure Of A Histidine Kinase-response Regulator		1e-13
1m5t_A		124	Crystal Structure Of The Response Regulator Divk Le		2e-09
4euk_A		153	Crystal Structure Length = 153		3e-09
1oxb_B		134	Complex Between Ypd1 And Sln1 Response Regulator Do		5e-09
2r25_B		133	Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef		6e-09
4ew8_A		268	Crystal Structure Of A C-Terminal Part Of Tyrosine		2e-08
3sl2_A		177	Atp Forms A Stable Complex With The Essential Histi		1e-07
2ayz_A		133	Solution Structure Of The E.Coli Rcsc C-Terminus (R		4e-07
2ayx_A		254	Solution Structure Of The E.Coli Rcsc C-Terminus (R		4e-07
1w25_A		459	Response Regulator Pled In Complex With C-digmp Len		2e-06
2wb4_A		459	Activated Diguanylate Cyclase Pled In Complex With		2e-06
1b00_A		127	Phob Receiver Domain From Escherichia Coli Length =		2e-06
3m6m_D		143	Crystal Structure Of Rpff Complexed With Rec Domain		2e-06
1zes_A		125	Bef3- Activated Phob Receiver Domain Length = 125		3e-06
1k66_A		149	Crystal Structure Of The Cyanobacterial Phytochrome		9e-06
3dge_C		122	Structure Of A Histidine Kinase-response Regulator		3e-05
3f6p_A		120	Crystal Structure Of Unphosphorelated Receiver Doma		3e-05
1s8n_A		205	Crystal Structure Of Rv1626 From Mycobacterium Tube		4e-05
2zwm_A		130	Crystal Structure Of Yycf Receiver Domain From Baci		4e-05
2jb9_A		127	Phob Response Regulator Receiver Domain Constitutiv		7e-05
1r62_A		160	Crystal Structure Of The C-terminal Domain Of The T		8e-05
2jba_A		127	Phob Response Regulator Receiver Domain Constitutiv		1e-04
3q9s_A		249	Crystal Structure Of Rra(1-215) From Deinococcus Ra		2e-04
3gt7_A		154	Crystal Structure Of Signal Receiver Domain Of Sign		2e-04
2jba_B		127	Phob Response Regulator Receiver Domain Constitutiv		2e-04
3gl9_A		122	The Structure Of A Histidine Kinase-Response Regula		2e-04
3eq2_A		394	Structure Of Hexagonal Crystal Form Of Pseudomonas		2e-04
3f7a_A		394	Structure Of Orthorhombic Crystal Form Of Pseudomon		2e-04
1jlk_A		147	Crystal Structure Of The Mn(2+)-Bound Form Of Respo		3e-04
1nxo_A		120	Micarec Ph7.0 Length = 120		4e-04
1i3c_A		149	Response Regulator For Cyanobacterial Phytochrome,		4e-04
3nnn_A		122	Bef3 Activated Drrd Receiver Domain Length = 122		4e-04
3a0r_A		349	Crystal Structure Of Histidine Kinase Thka (Tm1359)		4e-04
1kgs_A		225	Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG		5e-04
3c3m_A		138	Crystal Structure Of The N-Terminal Domain Of Respo		6e-04
2oqr_A		230	The Structure Of The Response Regulator Regx3 From		8e-04
1mvo_A		136	Crystal Structure Of The Phop Receiver Domain From		9e-04

>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206